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author | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-10-17 17:21:39 +0200 |
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committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-10-17 17:21:39 +0200 |
commit | 02cb4dded41609783964b8a0f6d01dde60455535 (patch) | |
tree | 9619d8d60eb13beb8b21c1d395a4ed84f236968d | |
parent | sci-biology/mothur: shutdown QC error about IUSE=boost missing (diff) | |
download | sci-02cb4dde.tar.gz sci-02cb4dde.tar.bz2 sci-02cb4dde.zip |
sci-biology/kat: new package
Boost library is not found during linking step
Package needs >=python-3.1 as the default python interpreter (for what?)
The bundled jellyfish code seems to result in a renamed library and *.pc
file so probably it will not clash with system-wide jellyfish
Package-Manager: portage-2.3.0
-rw-r--r-- | sci-biology/kat/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/kat/kat-2.1.1.ebuild | 29 | ||||
-rw-r--r-- | sci-biology/kat/kat-9999.ebuild | 29 | ||||
-rw-r--r-- | sci-biology/kat/metadata.xml | 12 |
4 files changed, 71 insertions, 0 deletions
diff --git a/sci-biology/kat/Manifest b/sci-biology/kat/Manifest new file mode 100644 index 000000000..c33dfec6b --- /dev/null +++ b/sci-biology/kat/Manifest @@ -0,0 +1 @@ +DIST kat-2.1.1.tar.gz 13857577 SHA256 8756ea5712b11dc48e4bb56816c59e1c5a566beda41a15e344270611b304d41c SHA512 3b54f709b46933b840f94236e141ed389e9e147fd9c28977532a56aec23bb556d3007d6ab9f00ae6003e11a9b4393e766a0327802163044873bd1f858be110ae WHIRLPOOL 146a869d1e34bb7fad8bcf745c544271108fac257dcb25f9f3ae1aa3e79f867f35258f3c76b36685050619449504df1c9535dc42a695362f67cecc199418a608 diff --git a/sci-biology/kat/kat-2.1.1.ebuild b/sci-biology/kat/kat-2.1.1.ebuild new file mode 100644 index 000000000..3a184c9cc --- /dev/null +++ b/sci-biology/kat/kat-2.1.1.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1 + +DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)" +HOMEPAGE="https://github.com/TGAC/KAT" +SRC_URI="https://github.com/TGAC/KAT/archive/Release-${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-libs/boost:0 + dev-python/matplotlib + sci-visualization/gnuplot" +RDEPEND="${DEPEND}" +# contains bundled modified version of jellyfish-2.2. + +S="${WORKDIR}"/KAT-Release-"${PV}" + +src_prepare(){ + sh ./autogen.sh . || die + default +} diff --git a/sci-biology/kat/kat-9999.ebuild b/sci-biology/kat/kat-9999.ebuild new file mode 100644 index 000000000..e8735e4d0 --- /dev/null +++ b/sci-biology/kat/kat-9999.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1 + +inherit git-r3 + +DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)" +HOMEPAGE="https://github.com/TGAC/KAT" +EGIT_REPO_URI="https://github.com/TGAC/KAT.git" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-libs/boost:0 + dev-python/matplotlib + sci-visualization/gnuplot" +RDEPEND="${DEPEND}" +# contains bundled a modified version of jellyfish-2.2.0 + +src_prepare(){ + sh ./autogen.sh . || die + default +} diff --git a/sci-biology/kat/metadata.xml b/sci-biology/kat/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/kat/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |