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authorMartin Mokrejs <mmokrejs@fold.natur.cuni.cz>2019-03-07 19:39:01 +0100
committerMartin Mokrejs <mmokrejs@fold.natur.cuni.cz>2019-03-07 19:39:01 +0100
commit70ea861437459dc2b1637d75098132578282b6f0 (patch)
treea9dea78dde4a555b87deb9a6c497e7b7562d9eb8
parentsci-biology/afni: version bump (diff)
downloadsci-70ea861437459dc2b1637d75098132578282b6f0.tar.gz
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sci-biology/ParaAT: new package
Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
-rw-r--r--sci-biology/ParaAT/Manifest1
-rw-r--r--sci-biology/ParaAT/ParaAT-1.0.ebuild29
-rw-r--r--sci-biology/ParaAT/metadata.xml12
3 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/ParaAT/Manifest b/sci-biology/ParaAT/Manifest
new file mode 100644
index 000000000..31c8a33df
--- /dev/null
+++ b/sci-biology/ParaAT/Manifest
@@ -0,0 +1 @@
+DIST ParaAT-1.0.tar.gz 228342 BLAKE2B 756a44ba8b0f53c356853e4ac175aa4364dd8cdad47b6ec3388633c553ab7102cace5e96a84ac686cdeaed131c1af90b43808728bf189a980ea30d95da74f740 SHA512 ae2337dab41a1075c954e247756c3e297ce2e67b8c3cfccfc5e3ac53bb7bfe532175b49d4a80a1076e3f279e6b8d2bd1f5b3d902ab06c384d7704b819e9e437d
diff --git a/sci-biology/ParaAT/ParaAT-1.0.ebuild b/sci-biology/ParaAT/ParaAT-1.0.ebuild
new file mode 100644
index 000000000..9339b121e
--- /dev/null
+++ b/sci-biology/ParaAT/ParaAT-1.0.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Create multiple protein-coding DNA alignments and back-Translation"
+HOMEPAGE="https://code.google.com/p/paraat
+ http://cbb.big.ac.cn/software
+ https://www.sciencedirect.com/science/article/pii/S0006291X12003518"
+SRC_URI="https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/paraat/${PN}${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}${PV}"
+
+src_prepare(){
+ rm -f ._Epal2nal.pl ._ParaAT.pl
+}
+
+src_install(){
+ dobin *.pl
+ dodoc readme.txt
+}
diff --git a/sci-biology/ParaAT/metadata.xml b/sci-biology/ParaAT/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/ParaAT/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>