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authorSébastien Fabbro <bicatali@gentoo.org>2013-04-29 09:29:23 -0700
committerSébastien Fabbro <bicatali@gentoo.org>2013-04-29 09:29:23 -0700
commite955c60cbd1e3f92222ea297a777fbd0f67b9d3c (patch)
treee005ac6b852fabac50d92e22f3eea1a8697105d6
parentMerge github.com:gentoo-science/sci (diff)
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Updated skel files
-rw-r--r--skel.ChangeLog8024
-rw-r--r--skel.ebuild2
-rw-r--r--skel.metadata.xml38
3 files changed, 14 insertions, 8050 deletions
diff --git a/skel.ChangeLog b/skel.ChangeLog
index 66ff00caf..6a6f1d0da 100644
--- a/skel.ChangeLog
+++ b/skel.ChangeLog
@@ -1,8027 +1,5 @@
-
-n.n.n / 2013-04-11
-==================
-
- * Bump, workaround #462602
- * Jabref-2.10b does not build anymore with Java 6.
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-chemistry/hydronmr: New addition
- * Merge pull request #60 from lilrc/master
- * sci-chemistry/gnome-chemistry-utils: Migrate to gnome2 eclass. Sort inherits. Add slots where suitable.
- * Fix missing inherit.
- * sci-chemistry/gnome-chemistry-utils: initial ebuild
- * Adding jabref-2.10b (beta) ebuild.
- * dev-lang/julia update dependency and remove useflag
- * dev-libs/double-conversion version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/ncbi-tools++: Some Prefix love
- * Add patches for gcc-4.8 and linux-3.9
- * Enable more options
- * Add patch to fix as-needed issue
- * Fix autogen
- * build was renamed to config
- * Merge remote-tracking branch 'github/master'
- * Update rebased patches
- * Merge pull request #58 from jauhien/cadabra-1.31
- * sci-mathematics/cadabra-1.31: new line fixes, thanks to jlec
- * sci-mathemtics/cadabra-1.31: different fixes, thanks to jlec
- * Update patches
- * sci-chemistry/GromacsWrapper: Drop py 2.5 support
- * sci-chemistry/GromacsWrapper: Enhance python r1 eclass usage
- * dev-python/RecSQL: Enhance python r1 eclass usage
- * sci-chemistry/GromacsWrapper: Drop in tree version
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update deps
- * sci-chemistry/pymol: Sync with tree
- * Add patch to fix hack
- * Add Gromacs Python wrapper
- * Add RecSQL to tree
- * sci-mathematics-cadabra-1.31: bump to EAPI-5
- * Update patches for 3.9
- * Merge remote-tracking branch 'github/master'
- * Update patches for 3.8
- * sci-chemistry/cs-rosetta: Missing exec bit for pdbrms
- * sci-libs/cs-rosetta-db: Correct installation directory to mach the main package
- * sci-mathematics/cadabra: version bump
- * sci-chemistry/rosetta: Fix for mpi
- * Merge pull request #57 from jauhien/thepeg-1.8.3_herwig++-2.6.3
- * sci-physics/thepeg: manifest fix
- * sci-chemistry/cs-rosetta: Use Fortran eclass
- * sci-chemistry/rosetta: Use system path
- * sci-chemistry/rosetta: Rename USE custom-flags -> custom-cflags
- * sci-chemistry/cs-rosetta: New addition
- * sci-libs/cs-rosetta-db: New addition
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * $PWD dont needed in automake invocation
- * Fix escape sequence
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/rosetta: Version Bump
- * Merge pull request #56 from jauhien/berkeley_upc_translator-2.16.0
- * dev-lang/berkeley_upc_translator: new ebuild for bug#462296, thanks to Paul H. Hargrove
- * aggregated into sci-chemistry/cs-rosetta
- * sci-biology/amos: Bump to latest git HEAD, fixes qt problems, #348031
- * Update patches
- * Merge remote-tracking branch 'github/master'
- * Fix some install path
- * Add gentoo style configure
- * Fix error in mdt_handler.c
- * Update metadata.xml
- * Update berkeley_upc-2.16.0.ebuild
- * Merge pull request #55 from jauhien/berkeley_upc-2.16.0
- * dev-db/cppdb: Import from sunrise
- * Update patch
- * Update patch
- * Add patch sended upstream
- * Update patch
- * Fix sandbox violation during configure
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update lustre patches
- * dev-lang/berkeley_upc: install into libexec
- * dev-lang/berkeley_upc: New ebuild for bug#462026
- * Merge ssh://github.com/gentoo-science/sci
- * initial commit
- * Update deps. thanks to Richard Yao
- * Update media-gfx/librecad ebuilds.
- * Make client and utils as default flags
- * Update to reflect latest zfs changes
- * nvcc flags dont needed anymore here
- * Fix build with cuda enabled
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Drop Werror hack
- * Now it builds and loads with 3.8
- * More updates to lustre patches
- * Update lustre patches. Now it builds against linux 3.8
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Improving mpi linking. It will now work with openmpi as well.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge ssh://github.com/gentoo-science/sci
- * fix build without emacs
- * sci-chemistry/usf-tools: Update license
- * sci-chemistry/usf-tools: Drop myself as maintainer
- * Merge pull request #53 from jauhien/cdfplayer-9.0.1
- * Merge pull request #54 from jauhien/thepeg-1.8.3_herwig++-2.6.3
- * sci-physics/herwig++: version bump
- * sci-physics/thepeg: version bump
- * sci-mathematics/cdfplayer: version bump
- * sci-chemistry/phenix-bin: Version BUmp
- * sci-chemistry/concoord: Version Bump; switch license to all-rights-reserved
- * added cuda build fix from gx86
- * sync with gx86
- * fix doc build on darwin
- * fixed deps + doc build on darwin
- * Newer version in CVS
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sync wit gx86
- * Fix typo
- * Fix typo
- * Realy add patches to ebuild
- * Add patches for kernels 3.7 and 3.8
- * sync with gx86 + clean up
- * merge slew of jlec small fixes
- * sci-libs/optpp: Removed uneeded python eclass, keyword for prefix
- * sci-libs/o2scl: Version bump
- * sci-libs/openblas: Version bump
- * sci-libs/openlibm: Initial import
- * Mask several package due to different QA issues
- * sci-chemistry/ambertools: Add missing multilib.eclass
- * sci-mathematics/yorick: Move to EAPI=5; add missing multilib.eclass
- * sci-chemistry/jligand: Fix version of refmac dep
- * sci-chemistry/pymol-plugins-psico: Rename sci-chemistry/mmtk to sci-libs/mmtk
- * sci-geosciences/qgis: Update to new qt deps names
- * sci-libs/lapack-reference: Add unocumented USE to metadata.xml
- * sci-biology/estscan: Add local USE to metadata.xml
- * sci-libs/coinor-bonmin: Add unocumented USE to metadata.xml
- * sci-biology/ncbi-tools++: Document USE
- * sci-chemistry/pymol-plugins-ezviz: Fix missing DOCTYPE
- * sci-chemistry/pymol: Fix missing DOCTYPE
- * dev-libs/fortrancl: Clean whitespace errors
- * dev-ml/zarith: Clean wrong space and blank lines; move EAPI=5
- * media-gfx/PhiloGL: Move to EAPI=5 and fix quoting
- * sci-astronomy/astrometry: Clean wrong space and blank lines
- * sci-libs/amdlibm: Updated download page and prefix'ed
- * sci-astronomy/eye: Clean wrong space and blank lines
- * sci-astronomy/stiff: Move to EAPI=5 and autotools-utils
- * sci-chemistry/nmrpipe: Fix quoting
- * sci-biology/artemis-bin: Clean whitespace errors
- * sci-biology/ncbi-tools++: Clean whitespace errors
- * sci-biology/sra_sdk: Drop useless blank line
- * sci-chemistry/specView: Fix quoting
- * sci-libs/amdlibm: Clean wrong space and blank lines
- * sci-libs/coinor-cppad: Drop useless blank line
- * sci-mathematics/alt-ergo: Move to EAPI=5; clean quoting and ebuild syntax and indention
- * sci-libs/parmetis: Drop useless blank line
- * sci-mathematics/giac: Drop useless blank line
- * sci-mathematics/bertini: Clean wrong space and blank lines
- * sci-mathematics/mdp: Clean wrong space and blank lines
- * sys-cluster/blcr: Drop useless blank line
- * sys-cluster/hpl: Sort *DEPEND correctly
- * sci-libs/lemon: Move to EAPI=5; sort *DEPEND correctly
- * sci-biology/ncbi-tools++: Add metadata.xml
- * sci-biology/hydra-sv: Add metadata.xml; move to EAPI=5; cleaned ebuild syntax
- * x11-libs/xview: Fix header
- * x11-libs/xview-bin: Fix header
- * sci-mathematics/gambit: Fix header and move to EAPI=5
- * sci-libs/libspatialindex: Fix header and move to EAPI=5: cleaned ebuild syntax
- * sci-mathematics/dsfmt: Fix header and move to EAPI=5; cleaned ebuild syntax
- * dev-perl/go-perl: Fix header and move to EAPI=5
- * dev-perl/Time-Progress: Fix header and move to EAPI=5
- * dev-perl/Log-Cabin: Fix header and move to EAPI=5
- * dev-perl/Text-ParseWords: Fix header and move to EAPI=5
- * dev-perl/DBIx-DBStag: Fix header and move to EAPI=5
- * sci-libs/zarja: Move to EAPI=5; fix slot for fftw dep; move to virtual/pkgconfig; clean ebuild syntax
- * sci-libs/modglue: Move to EPAI=5 and virtual/pkgconfig; clean usage of autotools-utils.eclass
- * sci-libs/blas-reference: Cleaned deps
- * sci-chemistry/burrow-owl: Bump to EPAI=5 and move to virtual/pkgconfig
- * sci-biology/manatee-igs: Shorten DESCRIPTION
- * sci-physics/openmx: Move to EAPI=5 and shorten DESCRIPTION
- * sci-chemistry/nwchem: Move to EAPI=5 and clean ebuild syntax style
- * Add new license
- * dev-python/Forthon: Correct license name
- * dev-java/jcip-annotations: Correct license name
- * sys-cluster/mvapich2: Add missing flag-o-matic.eclass
- * sci-mathematics/polymake: Add missing multilib.eclass
- * sci-libs/starparse: Add missing multilib.eclass; move to EAPI=5 and autotools-utils.eclass
- * dev-lang/vtune: Version Bump; move to parallel studio tarball; add missing multilib.eclass
- * sci-chemistry/modelfree: Add missing multilib.eclass; move to EAPI=5
- * sci-chemistry/ambertools: Add missing multilib.eclass
- * sci-biology/wcd: Add missing multilib.eclass; move to EAPI=5 and autotools-utils.eclass; simplify ebuild syntax; fix for ld.gold; fix implicid declarations
- * correct license
- * add new license
- * sci-biology/blasr: Migrate to git2 eclass and EAPI=5
- * app-portage/g-octave: Migrate to new python eclasses, git2 eclass and EAPI=5
- * dev-python/GOGrapher: Set license to GPL-2
- * sci-mathematics/flocq: Move to EAPI=5; assign RDEPEND explicitatly
- * sys-cluster/ovis: Update to new qt deps names
- * sci-visualization/paraview: Update to new qt deps names
- * sci-visualization/gnuplot: Update to new qt deps names
- * sci-chemistry/ball: Update to new qt deps names
- * sci-biology/amos: Update to new qt deps names
- * dev-python/pymvpa: Move to new python eclasses
- * sci-misc/hfst: Add ~amd64 or ~x86 keywords for revdeps
- * sci-misc/foma: Add ~amd64 or ~x86 keywords for revdeps
- * sci-misc/sfst: Add ~amd64 or ~x86 keywords for revdeps
- * sci-misc/openfst: Add ~amd64 or ~x86 keywords for revdeps
- * sci-visualization/ferret-bin: Move to EAPI=5; clean ebuild style; add missing die; remove portage-internal (env-update)
- * sci-mathematics/why: Drop ppc as deps are not keyworded; move to EAPI=5 and autotools-utils.eclass
- * sci-mathematics/gappalib-coq: Drop pcc and sparc keywords as deps are not keyworded; move to EAPI=5
- * sci-mathematics/lattE-macchiato: Fix rename of USE nocxx to cxx for dev-libs/gmp
- * sci-mathematics/pff: Drop pcc and sparc keywords as deps are not keyworded; move to EAPI=5
- * sci-mathematics/surfer: Move to autotools-utils.eclass; use virtual/pkgconfig
- * sci-misc/praat: Update to new qt deps names; remove virtual/x11
- * sci-misc/salome-geom: Update to new qt deps names
- * sci-misc/salome-component: Update to new qt deps names
- * sci-misc/salome-gui: Update to new qt deps names
- * sci-misc/salome-med: Update to new qt deps names
- * sci-misc/salome-smesh: Update to new qt deps names
- * sci-misc/salome-visu: Update to new qt deps names
- * sci-misc/salome-yacs: Update to new qt deps names
- * sci-physics/abinit: Drop old
- * sci-physics/root: Update to new qt deps names
- * sci-libs/trilinos: Update to new qt deps names
- * dev-perl/Log-Cabin: Add ~amd64 or ~x86 keywords for revdeps
- * We can't do profile specific masks
- * imported latest arch.list from gx86
- * sci-chemistry/curvefit: Correct lib name of ref blas
- * sci-biology/consed-bin: Correct motif dep naming
- * sci-biology/cluster: Correct motif dep naming
- * sci-biology/YASRA: Drop keywords as deps are unkeyworded
- * sci-biology/Gambit: Update to new qt deps names
- * dev-python/pythonocc: Version BUmp; change license; move to new python eclasses
- * dev-python/pythonocc: Version BUmp; change license; move to new python eclasses
- * media-gfx/librecad: Update to new qt deps names; drop old
- * dev-java/jogl: Keyworded for ~x86
- * dev-java/gluegen: Keyworded for ~x86
- * sci-libs/bigdft: Fix issue 52
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Initial import
- * Add ~x86
- * Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-libs/mlpack: Added a patch to respect libdir, and debug flag for profiling and debugging (thanks Ryan Curtin)
- * sci-libs/armadillo: Small prefix fix
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-mathematics/Macaulay2: Use PKG_CONFIG instead of generic pkg-config
- * sci-chemistry/simpson: Use PKG_CONFIG instead of generic pkg-config
- * sci-chemistry/gamess: Use PKG_CONFIG instead of generic pkg-config
- * sci-chemistry/nmrpipe: Fix broken Manifest, #458928
- * sci-libs/acml: Add -lm -lrt for static linking on pc file
- * sci-libs/openblas: Move threads to Libs.private in pc file
- * x11-libs/xview: Version Bump
- * x11-libs/xview-bin: Version Bump
- * sci-libs/Cgraph: Add blocker
- * sci-libs/mlpack: Initial import
- * sci-libs/armadillo: Version bump. Respect libdir
- * sci-libs/atlas: Switched threads libraries to Libs.private in pkg-config files
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * app-doc/root-docs: version bump
- * sci-physics/root: version bump
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/tmglib: Add missing dep on virtual/blas
- * sci-chemistry/freeon: Add missing dep on virtual/pkgconfig; bump to eapi=5; use pkg-config to detect blas
- * sci-libs/gmsh: Add missing dep on virtual/pkgconfig
- * sci-geosciences/fullprof-bin: Indent with tabs instead of spaces; use QA_PREBUILT for binary packages; restrict all arches but x86/amd64; bump EAPI to 5; clean DESCRIPTION; fix quoting
- * Merge branch 'master' of github.com:gentoo-science/sci
- * Merge pull request #28 from jamasi/master
- * sci-visualization/v_sim: Drop old; add missing multilib.eclass
- * Bundles all numeric libs, which are not easily unbundlable Various other QA issues
- * sci-libs/trilinos: Correct USE dependency for virtual/pkgconfig; bump EAPI to 5
- * sci-libs/armadillo: Correct USE dependency for virtual/pkgconfig
- * sci-chemistry/simpson: Add missing dep on virtual/pkgconfig
- * sci-chemistry/chooch: Bump to EAPI=5; add missing deps; drop additional virtual which aren't needed; move to autotools-utils
- * sci-chemistry/camshift: Bump to EAPI=5; add missing deps; fix for gcc-4.7
- * dev-ml/lacaml: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * Revert "Merge branch 'jlec' of github.com:gentoo-science/sci"
- * Revert "dev-ml/lacaml: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config"
- * Merge branch 'master' of github.com:gentoo-science/sci
- * Merge branch 'jlec' of github.com:gentoo-science/sci
- * dev-ml/lacaml: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * sci-astronomy/zebra: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * sci-chemistry/ambertools: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * sci-libs/bigdft: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; drop old
- * sci-libs/calculix-ccx: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; bump to EAPI=5; add missing dep on virtual/pkgconfig; use pkgconfig to detect arpack
- * sci-libs/gsl: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * sci-libs/magma: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; drop old
- * sci-libs/optpp: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; bump to EAPI=5; move to new python eclasses
- * sci-libs/wannier90: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; bump to EAPI=5
- * sci-libs/xblas: Bump EAPI to 5
- * sci-mathematics/freefem++: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; drop old
- * sci-mathematics/Macaulay2: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config#
- * sci-mathematics/petsc: Drop unused local USE-description: 'metis'
- * sci-mathematics/petsc: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; drop old
- * sci-mathematics/scilab: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
- * sci-physics/atompaw: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; correct dep for pkgconfig to virtual
- * sci-physics/atompaw2abinit: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; correct dep for pkgconfig to virtual
- * sci-physics/abinit: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; correct dep for pkgconfig to virtual; fix openmp compatibility detection
- * empi: bump 0.8
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-biology/mira: current stable and development version bumps
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * First working patch
- * sci-physics/elk: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; add missing dep on virtual/pkgconfig; cleaning of ebuild
- * sci-physics/elk: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; add missing dep on virtual/pkgconfig; cleaning of ebuild
- * sci-physics/openmx: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; add missing dep on virtual/pkgconfig
- * sys-cluster/hpl: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; add missing dep on virtual/pkgconfig
- * mathjax now in main tree
- * app-doc/scalapack-docs: Cleaning and keywording for prefix
- * virtual/scalapack: Bump to latest scalapack reference
- * virtual/lapack: Bump to latest reference
- * [dev-python/Forthon] Fix option parser to take into account that wrapper filename may have a suffix, use dodoc/docinto. Thanks to Michał Górny <mgorny@gentoo.org> for his help on this
- * [sci-visualization/yt] update
- * sci-libs/atlas: Move -lm -latlas to Libs.private in all pkg-config files
- * app-text/jabref: Fixed doc generation, keyword amd64-linux and x86-linux
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * The setup of python for the compilation of the GPU support in sci-libs/bigdft-1.7_pre12 improved.
- * Added sci-physics/abinit-7.0.5, compilation of GPU support in sci-libs/bigdft-1.7_pre12 improved.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * rstudio now in main tree
- * sci-chemistry/pymol: Fix sed syntax
- * sci-chemistry/pymol: Fix sed syntax
- * sci-chemistry/pymol: Adapt to current HEAD
- * version bump
- * Update live ebuild
- * Update live ebuild
- * newer version in the tree
- * Added ~x86 KEYWORD and API/README do docs.
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-chemistry/pymol: adopt to current HEAD
- * Typo
- * Added changes suggested by Christoph Junghans <ottxor@gentoo.org>.
- * Adding first draft version of jabref-2.9.2 ebuild.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/mkl: Version Bump
- * Fix probable trailing / in EROOT
- * Prepare alternatives-2.eclass for the main tree
- * sci-libs/mkl: Add KEYWORDS, #342185
- * sse41 -> sse4_1 (bug #456886) + ninja has missing keywords
- * added warning about petsc threads support
- * Merge remote-tracking branch 'github/master'
- * [sys-cluster/lustre] Update lustre ebuild
- * Merge pull request #49 from gentryx/master
- * Merge /usr/local/portage/andis_overlay
- * moved fperms to correct ebuild phase
- * Merge branch 'master' of https://github.com/gentoo-science/sci
- * Merge /usr/local/portage/andis_overlay
- * reverted to calling cutils eclass functions
- * Merge /usr/local/portage/andis_overlay
- * adapting to standard order of definitions, dropped some default-equivalent function definitions, re-added test build functions as tests wouldn't otherwise be run
- * fixed petsc compile issue reported by disperato
- * Merge /usr/local/portage/andis_overlay
- * dropped superfluous vcs-snapshot eclass and functions equivalent to default
- * minor improvements
- * added linebreaks where necessary
- * Merge ../sci.bitbucket
- * Merge branch 'master' of https://github.com/gentoo-science/sci
- * added proper quotes for variables, use fperms in favor of chmod
- * updated Manifest
- * fixed indenting, descriptions and updated to EAPI 5
- * updated EAPI, dropped versionator eclass, added shortcut for package name
- * added missing metadata.xml
- * using new EAPI and skipping superfluous die
- * adapted coding style to appease repoman
- * resolved various warnings reported by repoman for LibGeoDecomp and HPX, also fixed shortcomings as requested by jlec in https://github.com/gentoo-science/sci/pull/49/files#r2931081
- * Merge ../sci.bitbucket
- * sci-libs/armadillo: Version bump
- * Merge branch 'master' of https://github.com/gentoo-science/sci
- * Merge branch 'master' of github.com:gentoo-science/sci
- * virtual/blas: Rise eigen version in deps
- * Merge pull request #48 from jauhien/thepeg_182_herwig_262
- * sci-physics/herwig++: version bump
- * sci-physics/thepeg: version bump
- * Next couple of fixes
- * Merge branch 'master' of https://github.com/gentoo-science/sci
- * And another step forward
- * dev-java/jogl import from the java-overlay
- * dev-java/gluegen import from java-overlay
- * Fixed name in ChangeLog and metadata.xml
- * Removed CMAKE_VERBOSE=1 from libSUFR ebuilds
- * clean up package.mask
- * sci-chemistry/votca-csg-tutorials is part of sci-chemistry/votca-csg
- * app-doc/votca-csg-manual is part of sci-chemistry/votca-csg
- * Some more patching
- * More work on as-needed problems
- * fixed path
- * set SUID bit for access daemon
- * access-daemon needs a full path, thus we're hardcoding /usr to shut it up
- * don't hardcode absolute patch for access daemon
- * clean up + merge csg-{manual,tutorials}
- * added subslot, removed gromacs-manual blocker
- * gromacs-manual: got merged in gromacs ebuild
- * clean up
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-libs/coinor-csdp: use generic pkg-config
- * sci-libs/coinor-blis: Add missing coinor-bcps dependency
- * sci-libs/coinor-alps: Add missing coinor-cgl dependency for tests
- * sci-libs/coinor-netlib: no more empty doc
- * sci-libs/coinor-sample: no more empty doc
- * my version
- * fixed compilation with newer cmake, removed currently unused use flags
- * sci-libs/ipopt: Version bump
- * sci-libs/coinor-utils: Version bump
- * sci-libs/coinor-symphony: Version bump
- * sci-libs/coinor-sample: Version bump
- * sci-libs/coinor-osi: Version bump
- * sci-libs/coinor-netlib: Version bump
- * sci-libs/coinor-cppad: Version bump
- * sci-libs/coinor-couenne: Version bump
- * sci-libs/coinor-clp: Version bump
- * sci-libs/coinor-cgl: Version bump
- * sci-libs/coinor-blis: Version bump
- * added likwid ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/pymol: Bump python eclass
- * Merge pull request #45 from jhcloos/openmx
- * Merge branch 'master' of https://github.com/gentoo-science/sci
- * fixed copyright note
- * unmask scilab-5.4
- * sci-mathematics/scilab cleanup ebuild
- * sci-libs/atlas: Version bump
- * [sci-biology/psychopy] fix typo in inherit, add metadata, make repoman happy
- * [dev-python/Forthon] version bump, add modified version of BSD license, port to distutils-r1
- * Merge remote-tracking branch 'upstream/master'
- * added app-doc/gromacs-manual in here
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-chemistry/mgltools: Allow multiple py ABIs install
- * sci-chemistry/mgltools: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-webservices: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-volume: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-visionlib: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-vision: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-viewer-framework: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-utpackages: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-symserv: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-support: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-stride: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-sff: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-scenario2: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-scenario: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-qslimlib: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-pyglf: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-pybabel: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-pyautodock: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-pmv: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-opengltk: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-networkeditor: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-molkit: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-mglutil: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-gle: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-geomutils: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-dejavu: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-cmolkit: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-cadd: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-bhtree: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-autodocktools: Version Bump; move to distutils-r1.eclass
- * sci-chemistry/mgltools-autodocktools: Version Bump; move to distutils-r1.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge pull request #43 from TheChymera/master
- * sync with gx86
- * Inherited gnome2-utils and called cache update from pkg_postrm as well
- * used gnome2-utils.eclass function instead of touch to update cache
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/libcmatrix: fixed
- * merging github && overlays.g.o
- * sci-libs/acml: Version bump, now fetch restricted.
- * app-admin/eselect: Cleaned old
- * alternatives-2: update eselect min version
- * sci-libs/armadillo: Version bump
- * sci-chemistry/nmrpipe: Upstream changed tarballs
- * sci-mathematics/giac: it's supposed to be frozen...
- * Already in the tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-chemistry/nmrpipe: Version BUmp; drop fetch restriction as upstream provides and promotes direct access
- * added missing manifest
- * added ebuild for libgeodecomp 0.1.0
- * added LibGeoDecomp ebuild which tracks the trunk on Bitbucket
- * cosmetics
- * Fix bug 452806
- * cleaning ebuild
- * added ebuild for HPX
- * sci-chemistry/gromacs: use cuda.eclass
- * replaced src_install with python_install_all
- * fixed sci-chemistry/gromacs[test]
- * sci-physics/geant-vmc: source geant4 shell script before compiling
- * Updated minimum geant4 version
- * [sci-chemistry/gromacs] Drop restrict test for 4.6
- * [sci-chemistry/gromacs] Update 4.6 series ebuild
- * Corrected source repository Had been changed for testing.
- * Added pkg_postinst() in order to refresh the timestamp and make the desktop environment regenerate the chace - otherwise the icon doesn't show up appropriately
- * sci-physics/openmx: Fix fftw dependency.
- * dev-java/flexdock version bump
- * dev-java/scirenderer version bump
- * sci-mathematics/scilab update dependencies
- * virtual/geant: Initial import
- * Initial import
- * virtual/geant:3 work
- * sci-physics/geant-vmc: Initial import
- * Added src_install() script to make a launcher and assign an icon to it.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * In sci-physics/abinit-7.0.4 missing makefile sources for the gui added from the 6.12.3 version.
- * yet another update for git
- * Fperms instead of Chmod
- * Merge ssh://github.com/gentoo-science/sci
- * live ebuild update
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-physics/openmx added, version 3.6. sci-physics/atompaw version bumped to 3.0.1.9. New versions of sci-physics/abinit and sci-libs/bigdft added, but sci-libs/bigdft-1.7_pre12 is a version from the Abinit site, and the bigdft support in sci-physics/abinit-7.0.4 segfaults; on the other hand abinit-7.0.4 supports openmp. GPU support in sci-libs/bigdft-1.7_pre12 and sci-physics/abinit-7.0.4 not yet tested.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/phenix-bin: Add new dep on libtinfo.so
- * sci-astronomy/galfit-bin: Since #452532 we have libtinfo.so in the tree
- * Merge pull request #44 from jhcloos/cgns-tcltk
- * sci-libs/cgnstools: Add patch for current tcl/tk.
- * Added run permissions for the package's executable file Also upgraded to distutils-r1 and made other minor improvements to python-related metadata
- * Executable priviledges for /app/psychopyApp.py Also generally improved 9999 build (many thanks to prometheanfire from #gentoo-dev-help!)
- * dev-util/ndiff: updated DESCRIPTION and ebuild comments
- * Merge pull request #41 from AstroFloyd/master
- * Removed CMAKE_VERBOSE=1 in pg2plplot-0.2.0.ebuild
- * Initial upload of sci-libs/libmatheval (bug 181417)
- * moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/pff: version bump
- * sci-mathematics/giac: version bump
- * sci-mathematics/gappalib-coq: version bump
- * sci-mathematics/gappa: version bump
- * sci-mathematics/frama-c: version bump
- * sci-mathematics/flocq: version bump
- * sci-mathematics/alt-ergo: initial commit
- * dev-ml/zarith: initial commit
- * dev-ml/ocamlgraph: version bump
- * moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-libs/coinor-cbc: Version Bump
- * sci-mathematics/pulp: Move to EAPI=5, distutils-r1.eclass and virtual/pyparsing, #449564; unbundle sci-libs/coinor-cbc
- * inCvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/nmrpipe: Version Bump
- * Created first ebuild for PG2PLplot and added it to repo
- * Upgraded to sci-libs/libsufr-0.4.1.ebuild; added ChangeLog to repo
- * mpi.eclass: fix whitespace
- * moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * migrate to git-2 eclass, fix lapack support
- * sync with gentoo-x86
- * Merge pull request #40 from jauhien/LoopTools_manifest
- * sci-physics/LoopTools: manifest fixed forever, thanks to jlec
- * Merge pull request #39 from jauhien/cdfplayer_9_0_0
- * sci-mathematics/cdfplayer: use domenu
- * fixed python dep
- * sci-mathematics/scilab-5.4.0 cleanup dependencies
- * dev-java/scirenderer version bump
- * dev-java/flexdock version bump
- * dev-java/jrosetta fix ant build files
- * reverting to --no-as-needed LDFLAG
- * reverting to --no-as-needed LDFLAG
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * fixed repman issues
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * put back in the --as-needed LDFLAG to yield hopefully smaller executables; recreating the patch so that it applies automatically
- * upated to latest petsc 3.3 release
- * updated to latest petsc 3.2 release
- * app-admin/eselect: Version Bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/ncbi-tools++-9.0.0: although masked a not passing repoman checks this ebuild works for me, finally. All patches from upstream.
- * dev-lang/julia fix emacs filename
- * dev-lang/julia fix version in previous update
- * dev-lang/julia update dependencies
- * sci-mathematics/cdfplayer: version bump
- * sci-astronomy/lephare: Fixed manifest and removed patch, thanks James Cloos
- * sci-libs/magma: Fixed URL, thanks James Cloos
- * Merge pull request #37 from xhub/master
- * update EHG_REPO_URI
- * update EHG_REPO_URI
- * update EHG_REPO_URI
- * update EHG_REPO_URI
- * update EHG_REPO_URI
- * further clean up
- * version bump
- * Merge pull request #30 from jauhien/cdfplayer
- * fixed build with newer mkl
- * dev-util/ccache: fixed clang links
- * sci-biology/ncbi-tools++-9.0.0: a sketch of an updated ebuild, bug #279606, does not pass repoman checks due to IUSE items
- * sci-biology/sra_sdk-2.2.2a: a version bump, still requires MAKEOPTS=-j1 and copies softlinks to binaries and libraries as files, so everything is in 3 physical copies
- * sci-libs/magma: Bump
- * added for testing
- * masked dev-util/ccache use flags
- * sci-chemistry/gromacs: clean up
- * ccache-{clang,icc} are part of ccache now
- * fixed openmm suffix
- * fixed another typo
- * fixed typo
- * Added mkl support
- * added ~amd64
- * updated profile
- * added ~amd64
- * version bump
- * fix build with !cuda and python=3 + qa
- * sync with gx86
- * reworked emacs issue (bug #444526#c3) + move to git
- * sync with gx86
- * [sys-cluster/lustre] Add missing patch
- * [sys-cluster/lustre] Fix disabling
- * [sys-cluster/lustre] Disable Werror
- * [sys-cluster/lustre] All patches for 3.6 was merge into mainline
- * fortran is gone
- * Remove last instances of vtkNetCDF from paraview-3.14
- * Add cblas-external USE flag to sci-libs/gsl
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * dev-lang/julia add emacs config file
- * dev-lang/julia new ebuild
- * sci-libs/o2scl: Initial import
- * Sort webkit dep in paraview 3.14
- * Moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-libs/scalapack: Use latest pkg-config, removed old
- * sci-libs/lapackpp: Use latest pkg-config
- * sci-libs/atlas: Update for lapack-3.4.2
- * dev-cpp/eigen: Removed old
- * sci-libs/acml: Removed old
- * sci-libs/cblas-reference: Fixed pkg-config and fortran use
- * sci-libs/blas-reference: Removed unused dependencies
- * Removed unused dependencies
- * sci-libs/levmar: Use virtual/pkgconfig and prefix keywords
- * sci-libs/openblas: Version bump. Link latest version to live one
- * sci-libs/armadillo: Version bump
- * in Cvs, this was just a test Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Include suggestions from g-dev review
- * Renamed eclass Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-libs/mumps: Install libpord, force -j1 on makefile because of random parallel build failures, separate dummy sequential mpi library from the common mumps library
- * sci-mathematics/rstudio: version bump
- * InCvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Drop nasty MAC crap Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Update skel files Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * In Cvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * In Cvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * In Cvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * In Cvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * inCvs Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-libs/mkl: Version BUmp
- * sci-libs/ipp: Version BUmp
- * sci-biology/pybrain: Drop comments from metadata.xml; drop keywords from live ebuild
- * Merge branch 'master' of github.com:gentoo-science/sci
- * Merge pull request #36 from TheChymera/master
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * updated + fix for bug #444526
- * CMAKE_BUILD_DIR -> BUILD_DIR
- * ran repoman -vdx fix as per jlec'S recommendation
- * sci-chemistry/avogadro: Add patch to avoid textrels on i686, #439410
- * sci-chemistry/avogadro: Restrict test phase https://sourceforge.net/p/avogadro/bugs/653/
- * sci-chemistry/avogadro: Fix openbabel version, #442154
- * Merge branch 'master' of github.com:gentoo-science/sci
- * Moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Moved to tree Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-chemistry/openbabel: Add missing dep for USE=doc
- * Update README.md
- * Create README.md
- * Added live ebuild for pybrain
- * updated deps
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-lang/idb: Version bump
- * [sci-chemistry/nwchem] Initial import from bug #393139. Mpi still doesnt work
- * moved to gx86
- * moved to gx86 profile
- * sync with gx86
- * use T for temp file
- * remove graphical tools when -X
- * version bump + improved ebuild for fullprof
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * dev-java/hdf-java: cleaned for old version, buggy
- * fix typo in intel-sdp_pkg_pretend
- * updated deps
- * sci-chemistry/mddnmr: Version BUmp
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Drop stupid static-libs idea again Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * Last remaning underscored removed Signed-off-by: Justin Lecher <jlec@gentoo.org>
- * sci-chemistry/vmd: Drop dep on old tk
- * random files
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci into pkg-config
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/tmglib: Initial import
- * removed mac files from jlec
- * sci-astronomy/starlink-bin: Version bump
- * sci-libs/plasma: Version bump. Introduce testing
- * sci-libs/lapacke-reference: added tmg for testing, cleaning up ebuild
- * sci-libs/lapack-reference: removed tmg flag, now separate ebuild
- * sci-libs/lapack-reference: tmg flag description
- * sci-libs/lapack-reference: Added tmg use flag, fix a failing post command test
- * sci-libs/mmdb: Test version for new eclass
- * Keep order in pc file
- * full featured
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/mddnmr: Version Bump
- * Work in progress
- * Implemented comments from g-dev review
- * Be bin package friendly
- * Fix typo in Copyright year
- * Implemented comments from g-dev review
- * Only handle documentation if present
- * intel-sdp.eclass: fix install on x86 + qa
- * updated license
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * * intel: Drop USE=doc and add static-libs support Speed up unpacking #431614 Drop additional blank lines. Drop old testing functions Resort general functions and variables at the beginning Add descriptions to standard phase functions. declare local variables at once Use clear += insteat of repeating variables Drop version restriction of rpm2targz Drop Sebastien as maintainer Enhancement of intel-sdp.eclass dev-lang/icc: Version Bump dev-lang/ifc: Version Bump imported from tree dev-libs/intel-common: Version Bump; drop creation of license dir Imported from tree import from tree
- * dev-python/pytools: fix test related stuff and license
- * Drop USE=doc and add static-libs support
- * Speed up unpacking #431614
- * Drop additional blank lines.
- * Drop old testing functions
- * Resort general functions and variables at the beginning
- * Add descriptions to standard phase functions.
- * declare local variables at once
- * Use clear += insteat of repeating variables
- * Drop version restriction of rpm2targz
- * Drop Sebastien as maintainer
- * Enhancement of intel-sdp.eclass
- * dev-lang/icc: Version Bump
- * dev-lang/ifc: Version Bump
- * imported from tree
- * dev-libs/intel-common: Version Bump; drop creation of license dir
- * Imported from tree
- * import from tree
- * Merge pull request #33 from xhub/master
- * dev-python/pytools: fix test related stuff and license
- * added openmm support
- * mask sci-chemistry/gromacs[openmm]
- * re-added for gromacs
- * sci-mathematics/scilab various fixes
- * dev-python/pycuda: Bump EAPI to 5; add missing dep on dev-python/mako; use cuda.eclass and make use of cuda_gccbindir
- * dev-python/pytools: Bump EAPI to 5; add missing dep for tests
- * dev-python/pycuda: bump and add tests
- * dev-python/pytools: bump and add tests
- * # By Justin Lecher (20) and Olivier Huber (1) * cuda: (21 commits) dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage sci-chemistry/vmd: Using new cuda.eclass Imported from tree Preparing Version Bump dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error Correcting whitespace problem Minor fixes Be a little more informative. do not call pkg_setup from cuda.eclass Move pkg_postinst to dev-util/nvidia-cuda-toolkit Adding ignores for Mac Add comments and streamline dev-util/nvidia-cuda-sdk: Preparing Version Bump Add pkg_setup and gcc bindir detection dev-util/nvidia-cuda-toolkit: Enhancing cuda-config dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass dev-util/nvidia-cuda-toolkit: Version Bump preliminary cuda.eclass Work in progress towards cuda eclass usage dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter ...
- * Merge github.com:gentoo-science/sci
- * dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage
- * sci-chemistry/vmd: Using new cuda.eclass
- * Imported from tree
- * Preparing Version Bump
- * dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error
- * Correcting whitespace problem
- * Minor fixes
- * Be a little more informative.
- * do not call pkg_setup from cuda.eclass
- * Move pkg_postinst to dev-util/nvidia-cuda-toolkit
- * Adding ignores for Mac
- * Add comments and streamline
- * dev-util/nvidia-cuda-sdk: Preparing Version Bump
- * Add pkg_setup and gcc bindir detection
- * dev-util/nvidia-cuda-toolkit: Enhancing cuda-config
- * dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass
- * dev-util/nvidia-cuda-toolkit: Version Bump
- * preliminary cuda.eclass
- * Work in progress towards cuda eclass usage
- * dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter
- * Misc fixes for sci-libs/magma
- * * cuda: dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage sci-chemistry/vmd: Using new cuda.eclass Imported from tree Preparing Version Bump dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error Correcting whitespace problem Minor fixes Be a little more informative. do not call pkg_setup from cuda.eclass Move pkg_postinst to dev-util/nvidia-cuda-toolkit Adding ignores for Mac Add comments and streamline dev-util/nvidia-cuda-sdk: Preparing Version Bump Add pkg_setup and gcc bindir detection dev-util/nvidia-cuda-toolkit: Enhancing cuda-config dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass dev-util/nvidia-cuda-toolkit: Version Bump preliminary cuda.eclass Work in progress towards cuda eclass usage dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter
- * sci-chemistry/openbabel: Add test phase, check openmp correctly
- * sci-biology/staden: Version Bump, move to sane portage like building
- * sci-chemistry/nmrpipe: Version BUmp
- * Misc fixes for sci-libs/magma
- * dev-util/nvidia-cuda-sdk: Version Bump, inclusive cuda.eclass usage
- * sci-chemistry/vmd: Using new cuda.eclass
- * Imported from tree
- * Preparing Version Bump
- * hdf-java: version bump
- * flexdock: fix outdated SRC_URI and broken Manifest
- * Merge pull request #31 from xhub/master
- * dev-util/nvidia-cuda-toolkit: Merge change in both versions; fix whitespace error
- * Merge branch 'master' into cuda
- * Correcting whitespace problem
- * Merge branch 'cuda' of github.com:gentoo-science/sci into cuda
- * Minor fixes
- * Misc fixes for sci-libs/magma
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Ignore .DS_Store
- * Merge branch 'master' into cuda
- * Merge branch 'master' into pkg-config
- * First scratch of new pkgconfig.eclass
- * sci-mathematics/cdfplayer: installation of desktop file/other fixes
- * Be a little more informative.
- * do not call pkg_setup from cuda.eclass
- * Move pkg_postinst to dev-util/nvidia-cuda-toolkit
- * Adding ignores for Mac
- * Add comments and streamline
- * sci-mathematics/cdfplayer: installation path fixed
- * sci-mathematics/cdfplayer: new ebuild for bug #421019
- * improved ebuild for fullprof, added docs + examples useflags
- * Merge pull request #29 from jauhien/master
- * sci-physics/LoopTools: Manifest fixed
- * fixing manifest
- * removed g-cran, broken
- * Merge pull request #26 from TheChymera/master
- * Re-manifesting
- * dev-cpp/eigen: Version bump
- * improved ebuild for fullprof
- * improved ebuild for fullprof
- * added an ebuild for fullprof
- * Merge pull request #27 from wking/master
- * live ebuild update
- * updated build and deps
- * dev-java/netcdf: Add the netCDF licence (which is *not* MIT)
- * dev-util/nvidia-cuda-sdk: Preparing Version Bump
- * Add pkg_setup and gcc bindir detection
- * dev-util/nvidia-cuda-toolkit: Enhancing cuda-config
- * dev-util/nvidia-cuda-sdk: Reverted changes to bicatalis commit; Moving to cuda.eclass
- * dev-util/nvidia-cuda-toolkit: Version Bump
- * preliminary cuda.eclass
- * Work in progress towards cuda eclass usage
- * dev-util/nvidia-cuda-toolkit: Use cuda.eclass; install cuda-config; install doc and html into system path to support portages file filter
- * sci-chemistry/avogadro: Add test phase
- * sci-chemistry/simpson: Fix underlinking
- * Fix underlinking
- * Move to dev-libs
- * initial import of libcuda
- * initial import of libgdev
- * dev-lang/idb: in main tree
- * Moved to Tree
- * sci-chemistry/phenix-bin: Make no-fetch msg better understandable
- * sci-chemistry/phenix-bin: Fix deps
- * sci-chemistry/chimera-bin: Add dep on virtual/opengl
- * sci-chemistry/chimera-bin: Fix deps
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update live ebuild for latest Normaliz
- * sci-libs/gmsh: Add another dep for opengl support
- * sci-libs/gmsh: Addmissing dep on virtual/opengl
- * Added live ebuild for MDP
- * sci-libs/gmsh: Fix link problems with gold
- * sci-libs/med: Fix SRC_URI; move to EAPI=5
- * Fix dep on gmp[cxx] (Thanks Gerhard Bräunlich)
- * x11-libs/xview-bin: Update to latest debian patches
- * openbabel-python: Enter BUILD_DIR in src_install
- * Merge pull request #24 from TheChymera/master
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-biology/bamtools: Drop tree version, merge changes into live version
- * Merge pull request #25 from jauhien/thepeg-herwig-version-bump
- * sci-physics/herwig++: version bump
- * sci-physics/thepeg: version bump
- * sci-chemistry/ambertools: Add another fix for blas/lapack
- * Revert "Update Copyright"
- * Fix DEP on eselect
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Update Copyright
- * Merge pull request #21 from fredricj/master
- * version bump
- * Merge remote-tracking branch 'remotes/github/master'
- * bump
- * renamed dependency from openmotif to motif
- * Fix linking against arbitrary lapack implementation
- * net-fs/cvmfs: now in main tree
- * Proper DEPEND list and eclass info
- * Added MY_P key to SRC_URI path
- * Defined general MY_P
- * Removed redundant S= from git version, fixed faulty S= specification in 1.75.01
- * New ebuild for stable psychopy version + manifest
- * Ebuild improvements as per jauhien's instructions.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * New ebbuild for sci-biology/psychopy
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: remove unused patch
- * sci-chemistry/nmrpipe: Version Bump
- * sci-chemistry/wxmacmolplt: Fix prefix awareness; correct desktop file creation
- * sci-physics/root, app-doc/root-doc: update Manifest
- * ambertools: export AMBERHOME in ebuild
- * gamess: Version bump to 20120501.1
- * sci-libs/mkl: Fix size of builddir
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/lapacke-reference: Version bump. Restore the reflapack library name instead of lapack
- * sci-libs/lapack-reference: Version bump. Restore the reflapack library name instead of lapack
- * Merge blas to master
- * sci-physics/root: Drop virtual/fortran from DEP as it is provided by the fortran-2.eclass
- * sys-cluster/mpich2: Move to EAPI=5, use fortran-2.eclass correctly
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * app-doc/root-docs: version bump
- * sci-physics/root: version bump
- * sci-astronomy/zpeg: Drop unnessecarry virtual/fortran dep
- * dev-util/f90cache: Use fortran-2.eclass
- * dev-python/inference: Move to EAPI=5; correct usage of fortran-2.eclass
- * dev-python/ffnet: Move to EAPI=5; use distutils-r1.eclass; correct usage of fortran-2.eclass
- * dev-cpp/growler-link: Fix for gcc-4.7; correct fortran-2.eclass usage; move to autotools-utils.eclass
- * dev-cpp/eigen: Use vcs-snapshot.eclass, correct usage of fortran-2.eclass, some layout improvements
- * Update M2 live ebuild
- * inCvs
- * sci-libs/inchi: Straighten out some minor things, respect AR and RANLIB
- * app-admin/eselect: Bump to tree version
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * version bump
- * vmd: Fix netcdf config, bug #406737
- * wxmacmolplt: Version bump to 7.4.3
- * sci-libs/blas-reference: Version bump, revert to change soname to refblas
- * ambertools: Fix parallel tests
- * ambertools: Version bump to 12
- * avogadro: Version bump to 1.1.0
- * app-doc/root-docs: version bump
- * sci-physics/root: version bump
- * openbabel-python: Fix typo
- * openbabel-python: Add PYTHON_DEPS
- * inchi: Add static-libs USE flag
- * openbabel-python: Version bump to 2.3.2
- * openbabel-perl: Version bump to 2.3.2
- * openbabel: Version bump to 2.3.2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/scilab] revert part of commit 033255b367
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/scilab] remove virtual/fortran
- * [sci-mathematics/scilab] remove virtual/fortran
- * Merge pull request #22 from jauhien/master
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/LoopTools-2.8: Manifest fixed
- * [sci-libs/openblas] Solved problem with fetching
- * sci-chemistry/pymol: Add mime type definition
- * Merge branch 'master' of github.com:gentoo-science/sci
- * [sci-mathematics/scilab] fix slot dependencies
- * Merge pull request #18 from jauhien/herwig
- * bump boehm-gc, fix python
- * Fix deps of live ebuild
- * [x11-misc/envytools] There is no opcodes
- * [x11-misc/envytools] Allow to build with recent bison
- * [x11-misc/envytools] Add envytools
- * improve live ebuild
- * Removed the TODO item for the desktop file
- * Added rstudio-0.96.331 and desktop file fix
- * [sci-chemistry/trajng] Fix ebuild
- * [sci-chemistry/trajng] Add keywords
- * [sci-chemistry/xdrfile] Add keywords
- * [sci-chemistry/trajng] Add to repo
- * [sci-chemistry/xdrfile] actualy allow optional fortran
- * [sci-chemistry/xdrfile] Add to repo
- * inCVS
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-chemistry/phenix-bin: Version Bump
- * [app-vim/vim-gromacs] Fix typo
- * [app-vim/vim-gromacs] Update vim syntax repo uri
- * initial commit (thx to Torsten Stuehn)
- * package.mask: added sci-physics/espresso++
- * sync with gx86
- * [sci-libs/openblas] Version bump
- * [sys-cluster/lustre] Update patches
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fix to build petsc in Gentoo Prefix (thanks to Matthias Maier)
- * live ebuild update
- * live ebuild update
- * updated package.mask
- * cmake-utils.eclass got merged in gx86
- * hybrid stuff got merged
- * [sci-mathematics/scilab] fix errors in previous commit
- * [sci-mathematics/scilab] version bump
- * [dev-java/scirenderer] version bump
- * version bump
- * app-benchmarks/numbench: Updated dependency for eselect alternatives
- * sci-libs/mkl: Version bump
- * sci-libs/acml: Version bump
- * [sci-mathematics/scilab] update dependencies
- * [dev-java/scirenderer] version bump
- * [dev-java/jlatexmath-fop] version bump
- * [dev-java/jlatexmath] version bump
- * app-admin/eselect: rev-bumped to avoid conflict with tree
- * sci-chemistry/specView: Needs webkit support in pyside
- * sci-chemistry/chemBuild: Needs webkit support in pyside
- * sci-chemistry/specView: Prefix offset for header dirs
- * sci-chemistry/specView: Copile py code
- * sci-chemistry/chemBuild: New addition
- * import latest skel data from tree
- * sci-chemistry/specView: New addition
- * sci-chemistry/phenix-bin: Add missing dep
- * sci-chemistry/chimera-bin: Don't strip
- * sci-chemistry/chimera-bin: Set rpath on prefix
- * sci-chemistry/phenix-bin: Don't double prefix
- * sci-chemistry/phenix-bin: Not everyone installs on my box
- * Version Bump
- * [sys-cluster/lustre] call apply_user_patches
- * [sys-cluster/lustre] Initial import
- * in Cvs
- * in Cvs
- * in Cvs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * new addition
- * new addition
- * new license
- * new license
- * change one useflag name in paraview 3.14.1
- * in CVS
- * in CVS
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Enable postscript support in paraview 3.14.1 through gl2ps
- * app-admin/eselect: Version BUmp
- * sci-physics/herwig++: move sed stuff to pkg_preinst and change $D to $ED
- * sci-chemistry/curvefit: Quote sed correctly
- * sci-chemistry/curvefit: And it sits in EPREFIX
- * sci-chemistry/curvefit: We have ls in usr/bin
- * sci-chemistry/curvefit: Also include gcc-4.1 libdir in rpath
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-chemistry/curvefit: New addition
- * Merge pull request #19 from jauhien/looptools-2.8
- * Bump iml to the same level as s-o-g overlay, make it work on prefix including OS X.
- * sci-physics/LoopTools: version bump
- * sci-physics/herwig++: RDEPEND fixed
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dummy files added to make pcheck happy
- * Merge pull request #17 from jauhien/thepeg
- * New Ebuild for bug #433060
- * sci-physics/thepeg: maintainer email fixed
- * sci-physics/thepeg: DEPEND fixed
- * New Ebuild for bug #424003 thanks to hasufell, mgorny and xarthisius.
- * dev-python/astlib: Version bump
- * sci-libs/exodusii: Version Bump
- * Patches for sci-libs/bigdft to install GPU support corrected not to break linking against the compiled libraries
- * unbundle netcdf from paraview
- * update descriptions
- * Bunch of fix and ubundling for paraview 3.14.1
- * enabled commit signing
- * add empty files for pcheck
- * sci-chemistry/ligplot+: New addition
- * a license is a license not an eclass
- * add license
- * sci-chemistry/ssp: Fix offset of reference CS DB
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-chemistry/ssp: New addition
- * Merge pull request #16 from jauhien/LoopTools_so_fortran
- * ambertools: Add bugfix 28
- * sci-physics/LoopTools: shared library generation and dependency on virtual/fortran added
- * Merge branch 'master' of git+ssh://github.com/gentoo-science/sci
- * [app-benchmarks/numbench] Version bump.
- * paraview 3.14.1 initial import to greater masses
- * sync with gx86
- * better version in tree
- * Merge pull request #15 from jauhien/master
- * manifest fixed
- * renamed -bin
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge remote-tracking branch 'github/master'
- * [sci-libs/openblas] Version bump
- * update to EAPI=4, cosmetics, deps
- * sci-chemistry/usf-tools: Bump to latest release
- * Merge git+ssh://paul/local/overlays/sci
- * ucsf-tools
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge pull request #14 from xhub/github-master
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [dev-python/Forthon] version bump
- * sci-chemistry/pymol: Correct Desktop entry
- * Enable cross-compilation of {CBLAS,LAPACK}-reference
- * [sci-mathematics/scilab] version bump
- * [dev-java/scirenderer] version bump
- * [dev-ml/zarith] fix license
- * [dev-ml/gsl-ocaml] new package
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-chemistry/nmrpipe: no function called from prefix.eclass; please drop
- * sci-chemistry/nmrpipe: Enhancing prefix support
- * x11-libs/xview-bin: Add stupid binary package
- * use ninja if available
- * cmake-utils.eclass: added ninja support
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/scilab] live ebuild update
- * [app-benchmarks/numbench] New revision, directory cleaned up.
- * [app-benchmarks/numbench] Updated live ebuild.
- * Update live dependencies
- * [app-benchmarks/numbench] Version bump.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * dev-java/scirenderer version bump
- * dev-ml/lacaml version bump and cleanup old version
- * dev-java/scirenderer version bump
- * scotch in main tree
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Version bump sfst to 1.4.6g
- * Bump foma to version 0.9.16alpha.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version bump hfst to 3.3.12
- * x11-libs/xview: Add missing inherit of multilib
- * x11-libs/xview: Use everything from debian; build only 32bit libs everywhere; be carefully this is very hacky approach
- * sci-chemistry/nmrpipe: Version Bump, bring x11-libs/xview back into the game
- * Version bump.
- * sci-astronomy/galfit-bin: renamed to binary package
- * Update live ebuild
- * sci-astronomy/galfit: add links to ncurses/tinfo
- * sci-astronomy/psfex: fixed for newer plplot
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-astronomy/galfit: manifest/new tar file
- * dev-java/scirenderer version bump
- * dev-java/jgraphx version bump
- * dev-java/flexdock version bump
- * sci-mathematics/scilab live ebuild update
- * updated min eselect version
- * sci-libs/atlas: added a generic flag for more generic architectures, and possibility for user to pass configure options via standard EXTRA_ECONF flags
- * sci-astronomy/zpeg: Initial import
- * dev-cpp/eigen: Version bump. Changed license to MPL-2
- * fix deps
- * net-fs/cvmfs: fixed client init and setup, added config stage
- * added ~x86-macos
- * package.mask: removed obsolete entries
- * sync with gx86
- * sync with gx86
- * sync with gx86
- * sync with gx86
- * sync with gx86
- * net-fs/cvmfs: Initial import, need more work
- * sci-chemistry/concoord: Use QA_PREBUILT for binary packages
- * sci-physics/root: update User's Guide
- * app-doc/root-docs: remove Manifest
- * incvs
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-physics/root-docs: version bump
- * sci-physics/root: version bump
- * sci-physics/root: improve cling support
- * app-doc/root-docs: update live ebuild
- * sci-physics/root: update live ebuild
- * sci-physics/root: fix bug 426432
- * sci-libs/armadillo: Adapted for new atlas
- * sci-libs/coinor-dip: Initial import
- * fixed license to CPL
- * sci-libs/coinor-csdp: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * [dev-util/nvidia-cuda-sdk] fix asneeded issues
- * sci-libs/coinor-os: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * added plcol patch with increased diff line count, bug #391669; same patch needs to go into offical emboss-6.3.1_p4
- * sci-libs/coinor-cppad: Initial import
- * sci-libs/coinor-couenne: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * InCvs
- * sci-libs/coinor-vol: Fixed for occasional parallel install breaks
- * fixed description
- * sci-libs/coinor-bonmin: Initial import
- * sci-libs/coinor-bcp: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * live ebuild update
- * live ebuild update
- * sci-chemistry/votca-{ctp,kmc,moo}: removed never realy used
- * sci-astronomy/lephare: prefix keywording, version fix
- * [dev-libs/fortrancl] fix patch
- * sci-libs/coinor-symphony: Initial import
- * sci-libs/coinor-mp: Initial import
- * [sci-visualization/yt] update dependencies
- * [dev-python/Forthon] version bump
- * syntax error in passing lapack
- * sci-libs/ipopt: Initial import
- * sci-libs/coinor-blis: Initial import
- * sci-libs/coinor-bcps: Initial import
- * sci-libs/coinor-alps: Initial import
- * sci-libs/coinor-cbc: Initial import
- * sci-libs/coinor-cgl: Initial import
- * sci-libs/coinor-clp: Initial import
- * sci-libs/coinor-dylp: Initial import
- * sci-libs/coinor-vol: Initial import
- * sci-libs/coinor-osi: Initial import
- * sci-libs/coinor-utils: Initial import
- * sci-libs/coinor-netlib: Initial import
- * sci-libs/coinor-sample: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge pull request #12 from xhub/0825f16ab3ec153827d9aadc60880028d81a9efe
- * Add support for x32 ABI
- * sci-libs/mumps: Merge dummy sequential mpi into sequential mumps
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * media-gfx/librecad: dependency fix, bug#426730
- * clean up
- * initial commit
- * sci-libs/mumps: fix underlinking for sequential library
- * sci-libs/magma: Shared library fixes, prefix love and ebuild cleanup
- * sci-libs/xblas: Shared library fixes, prefix love and ebuild cleanup
- * sci-libs/plasma: Shared library fixes and prefix love
- * sci-libs/scotch: Shared library fixes and prefix love
- * sci-libs/mumps: Shared library fixes and prefix love
- * sci-libs/mpiblacs: Shared library fixes and prefix love
- * sci-libs/fdlibm: Shared library fixes and prefix love
- * sci-libs/cblas-reference: Shared library fixes and prefix love
- * sci-libs/scalapack: dependencies fix, removed old
- * sci-libs/mumps: prefix love
- * remove duplicate
- * dev-libs/double-conversion: Initial import
- * sci-mathematics/dsfmt: Initial import
- * sci-libs/fdlibm: Initial import
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Made dev-util/nvidia-cuda-sdk-4.2.9 compile with USE=opencl
- * [dev-java/scirenderer] version bump
- * [sci-mathematics/scilab-5.3.999] test ebuild for 5.4 branch
- * [dev-java/jrosetta] version bump
- * sci-libs/atlas: Version bump, this is a stable release.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * The bigdft-1.6-tuto.1-GPUlibs.patch of sci-libs/bigdft-1.6_pre1-r3 updated not to forget the pkg-config file
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * remove old
- * more sci-astronomy live ebuild masking
- * sci-astronomy/stiff: live version, prefix keywording
- * sci-astronomy/missfits: live version, prefix keywording
- * sci-astronomy/weightwatcher: live version, prefix keywording
- * sci-astronomy/eye: live version, prefix keywording
- * prefix keywording
- * prefix keywording
- * sci-libs/openblas: version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * dev-cpp/eigen: version bump and more test fixes
- * sci-libs/adolc: to main tree
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-libs/dsdp: changes incorporated in main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * pfft: removed - never used
- * layout.conf: updated manifest-hashes
- * version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * The version of sci-physics/elk bumped to 1.4.22, the old ones removed.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sync hash with new portage
- * dev-java/jlatexmath-fop: remove old
- * dev-java/jlatexmath: do not compile examples, bug #421743
- * sci-libs/hdf5: in main tree
- * Fixed typo.
- * Moved prefix to /opt.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge branch 'master' of github.com:gentoo-science/sci
- * Updated DEPEND.
- * Adding live build.
- * Added package mask for live ebuild, sci-chemistry/freeon-9999.
- * Merge pull request #9 from jauhien/master
- * Added modules-3.2.9c-r1.ebuild.
- * update metadata
- * New ebuild sci-physics/LoopTools-2.7 for bug#424860
- * root-docs: clean version moved to portage
- * Mask live ebuilds from sci-astronomy
- * sci-astronomy/stuff: Live version. Prefix love
- * no blas
- * Live version. Prefix love
- * sci-astronomy/sextractor: cblas -> atlas
- * sci-astronomy/scamp: cblas -> atlas
- * sci-astronomy/psfex: live version
- * sci-astronomy/swarp: added live version
- * sci-astronomy/scamp: live version
- * sci-astronomy/sextractor: Live version, introduced prefix love
- * dev-util/nvidia-cuda-sdk: Adapted to newer nvidia-cuda-sdk
- * dev-util/nvidia: rewrote ebuild
- * a blind attempt to get from a pull-push confusion
- * sci-libs/bigdft-1.6_pre1 from -r2 to -r3: patched to install necessary libraries for GPU support and to compile with gcc-4.6
- * dev-util/nvidia-cuda-toolkit: This package is prebuilt so we are using QA_PREBUILT for everything
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/atlas: version bump. Adapt calls to compilers. Inherit multilib
- * dev-util/nvidia-cuda-toolkit: fix for amd64-linux
- * dev-util/nvidia-cuda-toolkit: fix for amd64-linux
- * sci-libs/magma: Version bump. Updated patches
- * dev-util/nvidia-cuda-toolkit: more prefix fixes
- * dev-util/nvidia-cuda-sdk: import/clean/bump
- * dev-util/nvidia-cuda-toolkit: import/clean/bump
- * sci-chemistry/coot: Gcc-4.7 support included upstream
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: backport fixes from the portage
- * app-doc/root-docs: backport fixes from portage
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * more comments, .Rhistory
- * sci-mathematics/rstudio: initial import
- * dev-libs/mathjax: Initial import
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Moved to tree
- * dev-python/bitarray: New package requested by jamasi on irc
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-cpp/eigen: version bump
- * keyword amd64-linux and x86-linux
- * add pthread for as-needed
- * fix license and add flag desc
- * initial import
- * sci-physics/root: Drop in tree versions
- * [dev-python/pyhdf] whitespace
- * [dev-python/pyhdf] initial import wrt #423953. Ebuild written by Paweł Rumian <gorkypl@gmail.com> with my modifications
- * updated to petsc-3.3_p1
- * sci-libs/openblas: fixed soname
- * sci-libs/atlas: version bump
- * sci-libs/atlas: version bump
- * sci-libs/openblas: remove test flag
- * sci-libs/openblas: version bump
- * Merge github.com:gentoo-science/sci
- * sci-libs/magma: Initial import
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci into overlay
- * [sci-libs/libxc] add ~amd64-linux
- * [sci-libs/libxc] add ~amd64-linux
- * [sci-libs/bigdft] add ~amd64-linux
- * [sci-libs/wannier90] add ~amd64-linux
- * [sci-libs/fox] make it prefix aware
- * Merge pull request #8 from nicolasbock/master
- * Added libX11 dependency.
- * [dev-java/joda-convert] add missing dependency on junit:4
- * Merge branch 'master' of https://github.com/wking/science into wking-hdfview
- * dev-java/hdf-java-2.8: fix hdfview script (quotes and sh-bang)
- * dev-java/hdf-java-2.8: explicitly build packages for hdfview
- * dev-java/hdf-java: fix HOMEPAGE in v2.8 ebuild.
- * Fixed package description.
- * First commit for modules package.
- * app-doc/root-docs: backport htmldoc generation fixes
- * sci-physics/root: backport htmldoc fixes to 5.32 branch
- * sci-physics/root: remove redundant virtualx
- * sci-physics/root: reuse htmldoc patch
- * app-doc/root-docs: version bump for 5.34.00
- * sci-physics/root: version bump for 5.34.00
- * app-doc/root-docs: separate htmldoc from root package
- * sci-physics/root: fix repoman warnings and update manifest
- * sci-physics/root: separate htmldoc package
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Reflect the split of the fortran interface out of sci-libs/netcdf in sci-libs/bigdft and sci-libs/etsf_io. The version of sci-physics/elk bumped to 1.4.22, the old ones removed.
- * [sci-chemistry/gromacs] Add new acceleration use flags for gromacs
- * Reflect the split of the fortran interface out of sci-libs/netcdf in sci-physics/abinit-6.12.3-r2
- * Merge github.com:gentoo-science/sci
- * sci-libs/atlas: Version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fixed redundant license (bug #421401)
- * fixed redundant license (bug #421401)
- * sci-geosciences/harmonics-dwf-20120302: Fixed problem where "S" directory wasn't found.
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-geosciences/xtide: Version bump. Removed "non-commercial" use since upstream received take-down notice and that dataset is no longer available.
- * sci-geosciences/libtcd: Version bump. Removed "non-commercial" use since upstream received a take-down notice and the "non-commercial" dataset is no longer available.
- * sci-geosciences/harmonics-dwf-free: Version bump.
- * dev-perl/Const-Fast, dev-perl/File-Map, dev-perl/OpenGL, dev-perl/PDL, dev-perl/PerlIO-Layers: now in main tree
- * dev-perl/PerlIO-Layers: Initial import
- * dev-perl/OpenGL: Initial import
- * dev-perl/File-Map: Initial import
- * dev-perl/Const-Fast: Initial import
- * dev-perl/PDL: Version bump
- * sci-astronomy/scamp: Fixed patch name
- * sci-astronomy/lephare: Initial import
- * sci-physics/root: update live ebuild
- * initial commit
- * masked dev-lang/ispc-9999
- * sci-chemistry/coot: Fix for gcc-4.7
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: sync with tree
- * Masks moved to tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-java/scirenderer] new ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * add support for new hybrid kernels
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/cluster: Correct masking, #419999
- * added missing private headers
- * added petsc-3.3-p0 ebuild
- * sci-chemistry/mgltools-opengltk: Add missing dep on media-libs/glew and fix underlinking problem
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sys-devel/gdebugger: Fix Manifest
- * sci-libs/atlas: Version bump
- * Add missing hashes
- * Drop unused licenses
- * sci-biology/cluster: Rename cluster to cluster3, #419999
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-chemistry/mgltools-qslimlib: Fix for gcc-4.7
- * fixed info install
- * sci-chemistry/mgltools-pmv: Fix for bytecompiling
- * app-admin/eselect: Fix eaclocal call
- * Mask old dssp and make sci overlay user to tester
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * improved die() message to inform user that gcc-4.5.3 does not work while gcc-4.3.6 does
- * sci-chemistry/nmrview: Move to EAPI=4, specify QA_PREBUILT
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: use virtualx eclass for Xvfb
- * sci-chemistry/simpson: Correct blas to cblas for linking
- * [sci-mathematics/scilab] force jgraphx version
- * sci-physics/root: html documentation generation
- * initial commit
- * fixed EAPI bump
- * initial commit
- * sci-mathematics/scilab: fix bug #375769
- * dev-java/jogl: adapted gluegen dependency
- * sci-mathematics/scilab: fixed gui/xcos deps
- * dev-java/gluegen: sync version with java-overlay
- * sci-mathematics/scilab: complete ebuild revamp
- * sci-physics/root: sync live ebuild with upstream
- * [sys-cluster/hpl] add -Lflags from lapack and blas, fixes #400785 by Aleksandr Yakimov <yaleks@gentoo.ru>
- * sci-biology/cluster: Version Bump, Move to EAPI=4
- * dev-java/hdf-java: add hack for hdf5[mpi]
- * dev-java/hdf-java: fixed missing use
- * dev-java/flexdock: add missing jgoodies-looks dependency
- * [dev-lang/path64] remove epause along with eutils.eclass since it does nothing for EAPI>2. Thanks to Jeremy Olexa <darkside@gentoo.org> for noticing
- * [net-misc/dhcp] add user.eclass for enew{user,group}
- * [sci-physics/root] add user.eclass for enew{user,group}
- * [sys-cluster/condor] add user.eclass for enew{user,group}
- * [dev-lang/path64] add eutils.eclass for epause
- * [dev-util/smartgit] add eutils.eclass for make_desktop_entry
- * [media-gfx/librecad] add eutils.eclass for make_desktop_entry
- * [sci-mathematics/petsc] add eutils.eclass for epatch
- * [sci-geosciences/qgis] add eutils.eclass for make_desktop_entry
- * sci-physics/root: update User's Guide
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-astronomy/topcat: Initial import
- * sci-libs/exodusii: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * sci-libs/lapacke-reference: Add missing eutils.eclass
- * sci-libs/scalapack: Add missing eutils.eclass
- * sci-mathematics/dolfin: Add missing eutils.eclass, bump to EAPI=4
- * sci-physics/abinit: Add missing eutils.eclass
- * sci-physics/atompaw: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * sys-cluster/ovis: Add missing eutils.eclass, bump to EAPI=4, remove usage of base.eclass; fix installation of envd file; correct leading spaces
- * sci-astronomy/stilts: Initial import
- * sys-cluster/ovis: Add missing eutils.eclass, bump to EAPI=4, remove usage of base.eclass; fix installation of envd file; correct leading spaces
- * sys-cluster/ovis: Add missing eutils.eclass, bump to EAPI=4, remove usage of base.eclass; fix installation of envd file; correct leading spaces
- * sci-physics/root: Add missing eutils.eclass
- * sys-cluster/ovis: Add missing eutils.eclass, bump to EAPI=4, remove usage of base.eclass; fix installation of envd file; correct leading spaces
- * sci-libs/cgnslib: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * sci-libs/blas-reference: Add missing eutils.eclass
- * sci-libs/bigdft: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * sci-biology/mira: Add missing eutils.eclass, bump to EAPI=4, remove usage of base.eclass; drop old
- * sci-biology/gbrowse: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * sci-biology/est2uni: Bump to EAPI=4, remove unnecessary bits
- * sci-biology/emboss: Add missing eutils.eclass
- * sci-biology/amos: Bump to EAPI=4, remove unnecessary bits
- * dev-perl/Bio-BigFile: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * dev-java/jogl: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * dev-java/flexdock: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
- * Mask old version schema of ncbi-tools to make overlay user to be tester
- * [dev-java/hdf-java] remove stray quotes
- * media-gfx/librecad: added freetype to DEPS
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Mask >=sci-libs/arpack-96 to make overlay users to tester
- * Fix repoman warning about position off EAPI
- * sci-astronomy/starlink-bin: Initial import
- * sci-astronomy/zebra: Initial import
- * sci-libs/optpp: Initial import
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-java/gluegen: Fix repoman warning about position off EAPI
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: version bump
- * sci-physics/abinit-6.12.3-r1 modified to accept revisions of sci-libs/bigdft-1.6_pre1
- * The pkg-config file of sci-libs/bigdft corrected.
- * masked scilab-5.4*
- * dev-java/joda-time: import from wtk overlay
- * dev-java/joda-convert: import from the java overlay
- * dev-java/jrosetta: import from the java overlay
- * dev-java/jogl: import from the java overlay
- * dev-java/jcip-annotations: import from the java overlay
- * dev-java/gluegen: import from the java overlay
- * dev-java/jlatexmath-fop: Version bump
- * dev-java/jlatexmath: Version bump
- * dev-java/jeuclid-core: Version bump
- * dev-java/hdf-java: Version bump. Added use flag hdfview. Adapted from the wtk overlay
- * dev-java/netcdf: import to the science overlay and bump
- * dev-java/fits: quotes
- * dev-java/fits: updated herd and description
- * dev-java/fits: Version bump and import to the science overlay
- * sci-mathematics/flocq: QA fixe
- * sci-mathematics/flocq: Various QA fixes
- * [dev-python/cosmocalc] bump to eapi4, allow multiple python abis, call 2to3 for python3 support, reorder variables, add pypi to HOMEPAGE and SRC_URI, drop empty {R,}DEPEND
- * [dev-python/asciidata] Reorder vars to comply with ebuild.skel, drop redundant PYTHON_DEPEND (already done via distutils.eclass) and src_test, add pyfits to RDEPEND, numpy is RDEPEND only, build docs instead of downloading them, bump to EAPI4
- * [sci-mathematics/flocq] Fix ebuild eapi parsing and other minor issues
- * [metadata] Enable md5-cache
- * [dev-java/jgraphx] Fix ebuild eapi parsing and other minor issues
- * [dev-lang/vtune] Fix ebuild eapi parsing and other minor issues
- * sci-astronomy/galfit: Initial import
- * sci-astronomy/eazy: Initial import
- * sci-astronomy/bpz: Initial import
- * sci-libs/scalapack: Version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-astronomy/astrometry: Initial import
- * sci-mathematics/apron: fixes conflict of USE flags
- * [sci-libs/atlas] Version bump.
- * [sci-libs/openblas] Removed old alpha versions.
- * [sci-libs/openblas] Version bump.
- * sync with gx86
- * [dev-python/astropy] fix depends, drop keywords from live ebuild to make repoman happy, whitespaces
- * [dev-python/astropy] initial import, ebuild written by me
- * [sys-devel/gdebugger] slight improvements, add proper depends
- * Merge branch 'gdebugger' of https://github.com/nbigaouette/sci into nbigaouette-gdebugger
- * Version bump, drop old, don't install unnecessary doc files
- * sci-chemistry/pymol: Fix for latest HEAD
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix live ebuild
- * sci-chemistry/nmrpipe: Version Bump, use QA_PREBUILT
- * Bundled in nmrpipe
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Revert "Don't use "cp" for copying files/folders into ${D}, use insinto/doins -r instead."
- * Assert sed execution with "die".
- * Don't use "cp" for copying files/folders into ${D}, use insinto/doins -r instead. Note that an "mv" seems nessary to rename the installed folder (${My_PN} instead of ${My_PN}${PV}-${_arch}) and new variables ${_dest_folder} and ${_extracted_folder} are now used to prevent having ugly "basename" and "dirname" calls.
- * Create directories just before installing files to them.
- * Create destination directory just before first file copy.
- * Go into WORKDIR instead of ".."
- * Create .desktop file using "cat >> <<- EOF" instead of "echo".
- * No need for a dot at end of description; not a sentence.
- * Don't use html2text to create the license. Use the license from the overlay.
- * Added license for sys-devel/gdebugger
- * Add app-vim/vim-gromacs
- * sci-chemistry/nmrpipe: Use QA_PREBUILT instead of QA_FLAGS_IGNORED
- * sci-chemistry/nmrpipe: Version Bump, handle all binary files correctly for QA checks
- * New ebuild: AMD gDEBugger version 6.2.438, an OpenCL and OpenGL debugger and memory analyzer.
- * The dependence of sci-physics/abinit on sci-libs/fox corrected.
- * mask =sci-libs/mmdb-1.24.20111208, no pkg-confiles installed
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/gromacs] add more mirrors
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/mgltools-webservices: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-volume: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-visionlib: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-vision: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-viewer-framework: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-utpackages: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-symserv: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-support: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-stride: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-sff: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-scenario2: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-scenario: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-qslimlib: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-pyglf: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-pybabel: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-pyautodock: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-pmv: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-opengltk: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-networkeditor: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-molkit: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-mglutil: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-gle: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-geomutils: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-dejavu: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-cmolkit: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-cadd: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-bhtree: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools-autodocktools: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-chemistry/mgltools: Add 2.7-pypy-* to RESTRICT_PYTHON_ABIS
- * sci-libs/msms: RESTRICT pypy
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge pull request #2 from nbigaouette/vtune
- * Put symbolic links in /usr/bin and create .desktop file.
- * Added ebuild for vtune 11.0.7.221625 using the "intel-sdp" eclass.
- * Don't hardcode "rpm" as being the archive subdirectory where RPMs are to be found. Instead, define "INTEL_RPMS_DIRS" in the ebuild and loop over searching for the RPM. If unset, defaults to "rpm".
- * Matching the archive for ".tgz" specifically breaks VTune which has .tar.gz as archive. Instead, remove everything after the first dot (the .tar.gz or .tgz part).
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/blas-reference: applied lapack patch to not compile tmglib when not needed
- * sci-libs/lapack-reference: fixed patch for testing
- * fixed patch for testing
- * sci-chemistry/coot: Drop libpng-1.5 patch, included upstream
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/blas-reference: Fix manifest
- * sci-libs/lapack-reference: Fix manifest
- * sci-libs/blas-reference: Clean checksums
- * sci-libs/lapack-reference: Clean checksums
- * sci-libs/lapacke-reference: Version bump
- * sci-libs/lapack-reference: Version bump
- * sci-libs/blas-reference: Version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/libxc version bumped to 1.2.0.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sys-cluster/ovis] Masked for testing.
- * [sys-cluster/ovis] Initial ebuild.
- * Fix docdir for prefix. Thanks to Robert McGehee for reporting.
- * in main tree
- * dev-python/emcee: Initial import
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-python/astlib: Version bump
- * Minor improvements related to sci-libs/fox.
- * sci-physics/abinit-6.12.* improved to find uudecode, a patch created for that by mistake removed once more. Several packages related to Abinit, including sci-physics/elk, version-bumped.
- * [sci-chemistry/gromacs] Also add http mirror git uri
- * Merge branch 'master' into overlay
- * Merge branch 'master' of github.com:gentoo-science/sci
- * media-gfx/librecad: version bumped 1.0.2 2.0.0_alpha3
- * in main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/abinit bumped to 6.12.3, a patch file removed by mistake put back.
- * sci-libs/levmar: Initial import
- * Merge git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix test in dsdp
- * Merge branch 'master' of github.com:gentoo-science/sci
- * sci-geosciences/pydap and pydap plugins:
- * [dev-java/hdf-java] updates SRC_URI
- * [app-benchmarks/numbench] Version bump.
- * [sci-libs/trilinos] Solved many issues.
- * [sci-libs/trilinos] Masked for testing.
- * [sci-libs/trilinos] Initial ebuild.
- * Import dsdp to include a huge number of fixes and improvement
- * sci-physics/root: Drop in tree version
- * sci-physics/root: Fix EAPI=4 usage, don't mix CFLAGS/CXXFLAGS, respect LD
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: fix bug 408987
- * [dev-libs/fortrancl] version bump
- * Merge branch 'master' of github.com:gentoo-science/sci
- * [dev-python/Forthon] re-add as it is now released under BSD terms
- * sci-physics/root: version bump
- * [dev-python/Forthon] re-add as it is now released under BSD terms
- * sci-physics/root: version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: version bumped 2.0.0_alpha2
- * media-gfx/librecad: version bumped to 1.0.0_alpha2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-libs/hdf5] snapshot bump
- * [sci-libs/amdlibm] drop old, fix manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/bigdft & sci-physics/abinit clean-up after sci-physics/abinit version bump to 6.12.2 and tests
- * [dev-ml/zarith] version bump
- * [dev-ml/lacaml] moved to new oasis eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * correct URI for icons
- * Add new icon files provided by Ramiro Téllez Sanz
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Import tree changes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/brlcad: file cleanup
- * media-gfx/brlcad: added a missing patch
- * media-gfx/brlcad: added missing patch
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Fix patches to be in line with tree
- * Correct usage of python.eclass
- * New addition, written by me, #406401
- * [dev-cpp/eigen] Added 3.1.0_alpha2 version. Uncomplete lapack implementation.
- * [sci-libs/atlas] Version bump.
- * Fixes bug #405455, again
- * Fixes bug #405455, again
- * Fixes bug #405455, again
- * [sci-libs/openblas] Updated patch and removed useless and unclear ewarn.
- * [sci-libs/openblas] First stable version.
- * using PATCHES variable instead of epatch
- * sci-physics/root: fix Manifest
- * sci-physics/root: switch to virtual/shadow
- * [sci-libs/hdf5] add developement snapshot
- * sci-physics/abinit-6.12.1 fortran setup improvement corrected, gui preparation corrected
- * sci-physics/abinit metadata updated (libabinit USE flag), sci-physics/abinit-6.12.1 fortran setup improved
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Version Bump
- * [sci-libs/amdlibm] version bump wrt #405803 by Matthias Dahl <ua_gentoo_bugzilla@binary-island.eu>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fix manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Bump intel compiler suite
- * New package, ebuild written by me
- * sci-libs/bigdft-1.6.0 corrected, sci-physics/abinit-6.12.1 added and moved to autotools-utils, sci-libs/bigdft-1.6_pre1 it depends on added. Old versions of bigdft needed by old versions of abinit ressurected.
- * version bump
- * sci-physics/root: updave live ebuild
- * sci-physics/root: bug fix for #406817
- * New addition, written by me, #408995
- * This version and newer is in the tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * pandas: bump to 0.7.2.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-libs/amdlibm] remove SRC_URI wrt #405803, add valid 'amdlibm' license (copied to txt from pdf)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/frama-c: fix install with doc USE flag
- * dev-libs/simclist: version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/atlas: Version bump
- * sci-libs/openblas: Version bump
- * Drop gl and test patch -> included upstream
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/mosaik: masking mosaik-2.1.33 mosaik-9999
- * Merge github.com:gentoo-science/sci
- * Add a band aid to eselect's alternative2 framework for prefix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/sra_sdk-2.1.9: added missing insinto
- * Final fixes for OS X in gotoblas2
- * correct small error
- * switch to multilib in openblas, gotoblas2 will come later as it needs another fix
- * [net-misc/dhcp] Import more patches to make also client work
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/sra_sdk-2.1.9: use EAPI=4 hoping it will handle symlinks in bin/ and lib/ directories properly (but it does not, bug #408199
- * [net-misc/dhcp] Import patches from F17
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sys-cluster/blcr: added ' || die' calls
- * [sci-mathematics/polymake] add missing metadata.xml
- * [net-misc/dhcp] once again
- * [net-misc/dhcp] once again
- * [net-misc/dhcp] wrong one =D
- * [net-misc/dhcp] Opps fix patch
- * [net-misc/dhcp] Enable infiniband in new version
- * sci-biology/mosaik: version bump for 2.1.33 and GIT HEAD, neither compiles so far; upstream re-contacted
- * version bump, added the pdf documentation to SRC_URI, the compile process leaks through many 'Fastq.cpp:224: error: conditional expression between distinct pointer types 'gzFile_s*' and 'FILE*' lacks a cast' messages in Fastq.cpp:224, Fastq.cpp:226, Fasta.cpp:258, Fasta.cpp:260, Fasta.cpp:266, Fasta.cpp:268, but the package itself installs and executes at least
- * Merge branch 'polymake' of https://github.com/burcin/sci
- * add *-macos prefix support to gotblas2
- * Add *-macos prefix support to openblas
- * Remove old polybori ebuild from the tree. Get new stuff from sage-on-gentoo
- * Make sci-mathematics/polymake work with gentoo-prefix.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-visualization/gnuplot: clean up
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/mumps: Fixed for sequential (non mpi) libraries
- * sci-libs/scalapack: remove mpi from pc file
- * sci-libs/mumps: only allow earlier metis versions
- * sci-libs/scotch: added 64bits integer flag and described the tools flag
- * sci-libs/parmetis: added 64bits integer and double precision flags
- * masked parmetis-4
- * imported mumps
- * [sci-chemistry/simpson] fix metadata.xml wrt bug 407877 by Patrick Lauer <patrick@getnoo.org>
- * sci-libs/parmetis: bump
- * sci-libs/scotch bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: add live ebuild
- * sci-physics/root: fix llvm support
- * sci-physics/root: version bump and bugfix
- * sys-cluster/blcr: update SRC_HOME, SRC_URI and added a check for kernel version <2.6.30, resp. <2.6.38, a version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-python/pysolar] version bump
- * sci-libs/lemon: shortened DESCR line
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Removed maintainer, as herd is enough
- * Enable all fortran with single USE flag, fix license.
- * fixed petsc 3.1 ebuild (missing patch files)
- * disabled imagemagick, fixed lib configuring
- * moved comments out of the argument list
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-mathematics/petsc: more cleaning
- * fix missing linking if hypre and superlu enabled
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * added superlu on activated hypre flag
- * got sparse flag working
- * disabled non-working dependencies
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * Moved to tree
- * moved to tree
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * fixed undefined reference when using afterimage
- * Moved to tree
- * Block pypy usage
- * Added sci-libs/libsufr-0.3.2
- * removed obsolete call to env-update
- * reworked fortran and openmp support
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/ambertools: Add another buffer overflow patch
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * fixed disable X option and use deps
- * sci-chemistry/ambertools: Add bugfixes 22-27
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/lemon: added a note how to eventually create a shared library
- * added optional boost and afterimage dep
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-libs/inchi: Version bump, new licence
- * further simplification, added more optional deps
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * fixed banned dosed, added more comments
- * reworked configure function
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-biology/cutadapt: new package
- * sci-biology/phylobayes: new package, no explicit LICENSE stated
- * sci-biology/phylobayes: new package, no explicit LICENSE stated
- * sci-biology/cufflinks: new package
- * sci-libs/lemon: new package, required by sci-biology/cufflinks
- * [media-gfx/PhiloGL] version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-ml/zarith] new ebuild
- * [dev-ml/lacaml] version bump
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * added new petsc 3.2-p6 ebuild
- * Update deps in M2 live ebuild
- * sci-physics/root: fix repoman warning
- * sci-physics/root: version bump
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [sci-libs/fgsl] add prefix love
- * updated Manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [app-benchmarks/numbench] Updated live ebuild.
- * [app-benchmarks/numbench] Version 0.2_beta1.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * sci-biology/sra_sdk-2.1.9: remove trailing whitespace
- * sci-biology/sra_sdk-2.1.9: almost working ebuild
- * sci-biology/gbrowse-2.48: added dependency on <=sci-biology/primer3-2, per http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesigner-working-in-2-40-tp4724773p5479669.html
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * fixed hypre dependency
- * sci-physics/root: fix build on non-english locales
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci
- * [dev-lang/path64] add use.flag description
- * Commit package.mask as well, was missing in last commit
- * Dropped eapi again, zmedico: you don't need EAPI 4-python, when the ::repo is implied rather than explicit; masked sci-bioligy/amboss as well
- * Correct masking, thanks zmedico for help, bump EAPI to 4-python
- * Cleaned old patches, added goocanvas config option
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] update metadata.xml
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/plasma: fixed some as-needed issues
- * sci-libs/plasma: Initial import
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * making cblas-reference OS X aware
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/gsl: Fixed gsl-config/pkg-config issues
- * sci-libs/atlas: Version bump
- * app-doc/scalapack-docs: Bumping to match scalapack-2 which include blacs quick reference sheets
- * sci-libs/mpiblacs: Removed old, blocking scalapack > 2
- * sci-libs/scalapack: Version bump. CMake based building, BLACS is now included with ScaLAPACK
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Correct usage of autotools-eclass, prevents double call of elibtoolize
- * Keyworded for ~-linux prefix
- * Keyworded for ~-linux prefix
- * Keyworded for ~-linux prefix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Keyworded for ~-linux prefix
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Workaround file collision, #404257
- * intermidiate commit
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-libs/mpiblacs] Install blacs headers.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/atlas: Reverted to older lapack
- * Correct masking syntax
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Mask all emboss and embassy packages from overlay
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-python/dimensionful] initial import, ebuild written by me
- * [sci-libs/atlas] correct Manifest
- * Fix for current HEAD, correct desktop entry generation
- * Drop Keywords from live version
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Move to EAPI=4 and autotools-util.eclass
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * fixed manifest
- * sci-libs/lapacke-reference: Fixed pkg-config
- * sci-libs/lapack-reference: Fixed pkg-config
- * sci-libs/blas-reference: Fixed pkg-config
- * [media-gfx/PhiloGL] don't mess with paths and follow upstream as close as possible
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * eapi4 goodness
- * sci-libs/ipp: Bump
- * add units
- * sci-libs/mkl: Version bump
- * dev-lang/idb: Version bump
- * dev-lang/ifc: Version bump
- * dev-lang/icc: Version bump
- * dev-libs/intel-common: Version bump
- * [media-gfx/PhiloGL] Initial import, ebuild written by me
- * Remove Forthon until legal issues are cleared
- * [dev-python/Forthon] initial import, ebuild written by me
- * sci-libs/atlas: bump
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * sci-libs/lapacke-reference: bump, with home patches
- * sci-libs/lapack-reference: bump, with home patches
- * sci-libs/blas-reference: bump, with home patches
- * Drop python herd from remaining packages
- * Remove python herd from metadata per djc request
- * Fix for HEAD
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Update to latest head
- * in main tree
- * app-admin/eselect: sync with tree
- * sci-libs/libsufr: added ebuild for new version 0.3.1
- * sci-chemistry/gromacs: clean up
- * media-gfx/brlcad: removed old version
- * sci-chemistry/gromacs: fixed threads and mpi
- * media-gfx/brlcad: fixed as-needed filtering
- * [dev-cpp/eigen] version bump.
- * [dev-python/coards] also fix this in similar way
- * [sci-misc/salome*] Fix python depend
- * [metadata] Enable git signed commits
- * Moved to autotools-utils, some more sanity
- * Remove double prefix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Add this nasty binary package
- * dev-perl/Bio-DB-Das-Chado-0.32: added the LICENSE line and require DBD-Pg to be installed before compiling this packge
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-perl/Bio-BigFile: new package, initial ebuild, see bug #402835
- * some clean up in paraview 3.12.0
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * EROOT fix
- * fixing a missing EROOT
- * Fix Jon's name
- * Bertini-1.3.1 added
- * [sci-libs/gmsh] bump to EAPI4 for required use, removed unused call to flag-o-matic.eclass, shorten description, fix dependencies on libpng and zlib, remove redundant dependency on cmake, use PATCHES instead of calling src_unpack, mycmakeargs is now bash array, remove obsolete dies, compile doc during src_compile
- * Added gmsh-2.5.0-r1 to work with libpng-1.5. I also removed the 'png' and 'zlib' use flage as the two libraries are hard included in upstream code
- * [sys-cluster/scalasca] removed
- * Paraview 3.12.0 is in. ugly right now will shape it a bit better.
- * sci-biology/artemis: adjust ebuild based on upstream providing a Makefile
- * sci-biology/artemis: adjust ebuild based on upstream providing a Makefile
- * sci-biology/apollo: new package
- * sci-biology/tablet-bin: adjust PATH to point to the installation place
- * adjust PATH to point to the installation place, few comment lines changes
- * sci-biology/tablet-bin-1.11.11.01: make use of the TMPDIR variable
- * added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED messages quiet, bugs #402507 (learned from bug #387227)
- * added the addpredict() trick from tablet-bin*.ebuild to make the ACCESS DENIED messages quiet, bugs #402507 (learned from bug #387227)
- * sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION SUMMARY errors
- * sci-biology/OBO-Edit: more attempts to get rid of sandbox ACCESS VIOLATION SUMMARY errors
- * sci-biology-sra_sdk-2.1.9: preserve libs written directly into at the end of src_compile() and install them later on
- * sci-biology/sra_sdk-2.1.6: dropping an old crap
- * two more Makefiles needed a DESTDIR patch, in conjunction with an ugly symlink hack in one can build the stuff; dobin does not transfer symliks so every binary appears installed 3 times; upstream bug http://jira.be-md.ncbi.nlm.nih.gov/browse/TR-10207
- * sci-mathematics/why: version bump
- * sci-mathematics/pff: version bump
- * sci-mathematics/ltl2ba: QA fixe
- * sci-mathematics/giac: QA fixes
- * sci-mathematics/gappalib-coq: version bump
- * sci-mathematics/gappa: version bump
- * sci-mathematics/frama-c: version bump
- * sci-mathematics/flocq: QA Fixes
- * sci-mathematics/apron: QA fixes
- * dev-ml/mlgmpidl: SRC_URI now uses HTTPS
- * dev-ml/ocamlgraph: version bump
- * sci-biology/sra_sdk-2.1.9: version bump and almost correct DESTDIR patch
- * handle new vmd detection
- * media-gfx/brlcad: version bumped 7.20.4
- * media-gfx/librecad: version bumped to 1.0.1
- * added openmp support
- * Adding kash (binary version only)
- * Add kash licence
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [zfs,spl] They are in tree already
- * updated eselect dependency
- * sci-biology/seaview: and the path to the helpfile was corrected in the Makefile to match intended location specified in ebuild
- * sci-biology/seaview: version bump; add missing symlink so that the C++ header can be found; remove calll to xft-config and use pkg-config instead; set our Gentoo FLTK path (not include path) to /usr/include/fltk-1 so that svg.o gets included during linking, otherwise we get undefined reference to svg_tree_save(FD_nj_plot*)
- * Added first ebuild for k3match, version 1.0
- * Updated Manifest for ndiff-2.00
- * Added an ebuild for ndiff-2.00
- * sync with tree and bug #400999#c7
- * sci-biology/wgs-assembler-7.0: version bump, would be nice if we could stop compilation of the kmer/ subdir (an r1916 snapshot) and DEPEND on the external http://kmer.sourceforge.net complete bundle instead
- * updated package.mask
- * version bump
- * sci-libs/lapack-reference: Version bump
- * sci-libs/blas-reference: Version bump
- * [sci-visualization/yt] update deps, add pyx remove zlib
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/acml: Version bump
- * sci-libs/lapackpp: Version bump
- * Dropped DOCS as it is handled by default
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * CCP4 upstream took over the real maintance
- * sci-libs/atlas: Version bump
- * switched to main tree hypre
- * now in main tree
- * app-admin/eselect: merge with main tree
- * [sci-visualization/labplot] Add live ebuild
- * sci-physics/root: fix Manifest
- * sci-physics/root: fix cfitsio linking
- * cleanup xrootd removal
- * [dev-java/flexdock] version bump
- * [dev-python/astlib] Version bump, drop old
- * version bump and some fixes so that it works with webappconfig again?
- * [sci-visualization/yt] initial import, ebuild written by me
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * New addition
- * sci-biology/lastz: A pairwise DNA sequence aligner (also chromosome to chromosome), a BLASTZ replacement
- * sci-biology/YASRA: Yet Another Short Read Assembler to reference using LASTZ
- * sci-biology/gbrowse: added dev-perl/TermReadKey to dependencies
- * sci-biology/libgtextutils: Gordon text utils library
- * [dev-libs/fortrancl] initial import, ebuild written by me
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Call python_pkg_setup always
- * Convert to thin manifests (as suggested by alexxy and jlec)
- * Removed because the sources cannot be fetched
- * Removed because the file is non-fetchable
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * tweaks to mpich2
- * mpich2: add link to upstream report
- * Now in main tree
- * Move sci-misc/simpy -> dev-python/simpy
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * Remove patch, fixed upstream
- * Drop failing tests for now, fix #393361
- * Version bump
- * Bumped EAPI to 4 and added new eautoreconf handling of autotools-utils.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix double installation of spectrum.h
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/artemis-bin: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool
- * sci-biology/artemis: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * dev-python/GOGrapher: more robust version from same author is at https://github.com/ntamas/biopython/blob/gosupport which is a rewrite of https://github.com/gotgenes/biopython
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/manatee-igs: new package for prokaryotic genome annotation and editing using chado
- * sci-biology/manatee-igs: new package for prokaryotic genome annotation and editing using chado
- * dev-perl/Log-Cabin: new package, required by sci-biology/manatee-igs
- * Bumped to new upstream repo uri
- * Drop double call of emake in src_configure
- * Bumped to new upstream repo uri
- * New package, ebuild written by me
- * in main tree
- * now in main tree
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * moved to tree
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Version Bump, #373679
- * Added DEP on dev-python/simpy
- * CAT move for simpy package
- * Add missing fortran support
- * Initial commit
- * blas svn
- * switch sci herd to sci-* sub herds, full overlay re-manifest
- * plplot-5.9.9 compatibility
- * move dependency for xrootd from main tree
- * move dependency for xrootd from main tree
- * move dependency for xrootd from main tree
- * nco in tree
- * documented status of go-parser (as a very simple implementation) which should be dropped once its successor code get into biopython
- * dev-python/go-parser: a Gene Ontology OBO file format parser
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Sync ebuild to use install4j as in sci-biology/tablet-bin. Awaiting a fix from upstream so that the installer really respects --destination or -dir options.
- * sci-chemistry/nmrpipe: Remove dep on xview
- * sci-chemistry/nmrpipe: Always use bundled xview
- * sci-mathematics/scilab-5.3.3 fixes for jdk-1.7
- * Fix digest
- * [dev-java/flexdock] version bump to 1.1
- * Version Bump
- * eigen: version bump
- * New package, ebuild written by me
- * New package, ebuild written by me
- * sci-physics/atompaw2abinit-3.3.0-r1.ebuild reflects the new structure of the abinit web
- * media-gfx/brlcad: use system libraries for svn version
- * media-gfx/brlcad: version bumped to 7.20.4
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/libxc-1.1.0-r1 forces compilation with -fPIC for sci-physics/atompaw-3.0.1.3 not to complain
- * sci-physics/root: fix clarens dependency
- * sci-phzsics/elk Manifest broken by mistake, now corrected
- * media-gfx/librecad: version bumped to 1.0.0
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/elk adapted to accept sci-libs/libxc-1.1.0 and upgraded to 1.4.5
- * sci-physics/abinit updated to 6.10.3, sci-libs/bigdft to 1.2.0.5, and sci-libs/libxc to 1.1.0
- * sci-geosciences/xtide: Moved the setting of the HFILE_PATH environment variable back to the xtide ebuild. Made HFILE_PATH point to a standard directory /usr/share/harmonics. Version bump to install xtide with new HFILE_PATH and all dependencies. sci-geosciences/libtcd: Version bump to reinstall dependencies. sci-geosciences/harmonics-dwf-free: Moved location of database file to /usr/share/harmonics sci-geosciences/harmonics-dwf-free-noncomm: Moved location of database file to /usr/share/harmonics
- * media-gfx/librecad: version bump to 2.0.0_alpha1
- * ebuild doc cleanup
- * A seed-driven progressive assembly program
- * sci-biology/estscan: added Manifest file
- * added configuration.php.patch for VHOSTS setup
- * sci-biology/est2uni: example of necessary config changes for vhosts setup
- * removed arches for this -9999 ebuild for sanity
- * fix determination of svn-based checkout number required for building
- * remove offending double-quotes
- * ebuild cleanup, works, releasing for testing
- * fix sanbox violations on some systems
- * added MYPV to the ebuild to make it more easily re-usable
- * sci-physics/root: add ~x86-linux keyword
- * sci-biology/tablet-bin: ebuild cleanup, version bump
- * sci-biology/tablet-bin: ebuild cleanup, version bump
- * sci-biology/tablet-bin: ebuild cleanup, version bump, #348029
- * sci-biology/tablet-bin: ebuild cleanup, version bump
- * sci-biology/mira: version bump
- * sci-biology/biopython: 1.58 version bump
- * Version Bump
- * Fix pymol-9999-setup.py.patch for current HEAD
- * sci-physics/root: fix afs patch
- * sci-physics/root: new production release bump
- * sci-physics/xrootd: unbundled package from ROOT
- * app-doc/root-docs: version bump
- * sci-mathematics/pulp: Initial ebuild.
- * Another Version bump
- * Version BUmp, added missing dep, found by louic and reported in irc
- * New package, ebuild written by me
- * fixed astromatic packages for recent ATLAS
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-python/pandas: Version bump.
- * [sci-physics/espresso] live ebuild update
- * casacore now in main tree
- * sci-physics/root: version bump
- * + sci-geosciences/harmonics-dwf-free and + sci-geosciences/harmonics-dwf-free-noncomm: Now create /etc/env.d/50xtide_harm in both of these ebuilds which contains HFILE_PATH environment variable used by the xtide suite of programs to locate the tidal constituent databases. Concluded that this was better suited here than in the xtide ebuild. + sci-geosciences/libtcd: Trivial change updating DEPEND to bring in the latest harmonics-dwf* versions. + sci-geosciences/xtide: Version bump. Eliminated creation of /etc/xtide.conf by using HFILE_PATH environment variable created by the harmonics-dwf* ebuilds.
- * Fix manifest for sci-geosciences/pydap_handlers_nca
- * Changed my e-mail address...
- * sci-mathematics/mdp: Version bump.
- * sci-misc/simpy: Version bump.
- * sci-geosciences/pydap_handlers_sqlite: Initial build.
- * sci-geosciences/pydap_handlers_sql: Version bump.
- * sci-geosciences/pydap_handlers_hdf5: Initial ebuild
- * sci-geosciences/pydap_handlers_cdms: Version bump.
- * [sci-libs/hdf5] drop old
- * Fixed digest, #390723
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-geosciences/pydap: Version bump.
- * Corrected Slotting of media-libs/libpng and media-libs/tiff
- * [sci-mathematics/scilab] 5.3.3 version bump
- * [dev-ml/lacaml] initial import
- * openbabel-perl: Redigest
- * Version Bump
- * Masked sco-chemistry/nmrpipe where ever needed
- * mask nmrpipe on multilib
- * Fix blas + lapack for hpl
- * openbabel-perl: Version bump to 2.3.1
- * openbabel-python: Version bump to 2.3.1
- * openbabel: Version bump to 2.3.1
- * [sci-libs/libsufr] initial import
- * sci-libs/bigdft Manifest broken by mistake, now corrected
- * sci-physics/abinit bumped to 6.10.2, sci-physics/atompaw to 3.0.1.3
- * lapack-docs: fix file clash with blas-docs
- * initial commit
- * fixed desc
- * initial commit
- * initial commit
- * updated package.mask
- * multilib support
- * multilib support
- * EAPI bump + multilib support
- * live ebuild update
- * live ebuild update
- * live ebuild update
- * live ebuild update
- * Live ebuild updates
- * Corrected email adress in ChangeLog entry
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * remanifest
- * sci-chemistry/ambertools: Fix possible buffer overflow
- * sci-chemistry/ambertools: Add bugfixes up to 21, other fixes
- * Updated license
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Version Bump
- * Removed no-herd from herd tag in metadata.xml
- * Version Bump
- * Removed no-herd from herd tag in metadata.xml
- * Version Bump
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * fix usage of check-reqs.eclass Adopt changes in new intel tarball
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * Removed no-herd from herd tag in metadata.xml
- * media-gfx/librecad: version bumped to 1.0.0_rc4
- * fixed typo
- * Fixed usage of check_reqs.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: switch to EAPI 4
- * sci-physics/root: remove old versions
- * sci-physics/root: update to 5.30.03
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-geosciences/tappy: Version bump.
- * Bump do fit with embassy-6.4.0
- * [sci-libs/atlas] Version bump
- * Fix undefined symbols because of missing gslcblas lib during linking
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: Cleaned up old versions
- * In main tree
- * sci-physics/root: 5.28.00g update
- * [dev-cpp/eigen] Version bump
- * Added dep on >=sys-devel/libtool-2.4-r2
- * Moved to autotools-utils.eclass in order to have correct .a/la file handling, #385865; added png15 patch
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Add png15 support and don't build static libs
- * media-gfx/librecad: added boost to DEPS
- * Use virtualx.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: version bump to 5.30.02
- * [sci-chemistry/gromacs] added 4.6 live version
- * updated package.mask
- * [app-admin/eselect] Version bump
- * sci-physics/abinit bumped to 6.8.2.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-python/pandas: Initial ebuild. Pandas is a data analysis toolkit. Bug report page is https://bugs.gentoo.org/show_bug.cgi?id=384583
- * media-gfx/brlcad: included patch for 7.20.2, bug#378273
- * Fix live ebuild
- * Fix tests better
- * Use Fedora hosting because unpstream removed the patches
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/sra_sdk-2.1.6: adjust to altered source tree strcuture, add weird ncbi/ subdirs to be installed, more comments in the ebuild
- * sci-biology/sra_sdk-2.1.6: version bump
- * media-gfx/librecad: fixed a missing file
- * media-gfx/librecad: fixed manifests
- * [sci-mathematics/scilab] install scilab mimetype
- * Updated to new revision scheme
- * Download tarballs with package revision
- * Silent upstream bump
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: version bump to 1.0.0_rc3
- * [sci-libs/scilab] Various fixes
- * [sci-libs/openmm] version 2.0 is not supported by upstream anymore
- * [sci-libs/xdrfile] removed it was never really stable
- * [sci-libs/nfft] updated metadata
- * [dev-tex/picins] not needed by gnuplot anymore
- * [sys-cluster/nullmpi] updated metadata
- * Add $(use_enable debug) on request from mgorny
- * [dev-python/astlib] bump
- * update pest manifest (changelog wasn't matching)
- * sci-mathematics/pest - Version bump to 12.2.
- * [sci-libs/pfft] version bump
- * media-gfx/librecad: fixed manifests
- * removed unneeded entries to blas-reference
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version bump with new buildsystem
- * [sci-chemistry/votca-csg] remove obsolete bash-completion_pkg_postinst
- * [sci-chemistry/votca-csg] Migrate to the bash-completion-r1 eclass
- * [sci-chemistry/gromacs] Migrate to the bash-completion-r1 eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * moved to new release download link and version bump, documented that included JsonCPP is a modified version
- * media-gfx/librecad: remove qt3support dependency
- * update pest manifest
- * Point to current HOMEPAGE
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * updated dependencies
- * upgrade version
- * [app-admin/eselect] Fix manifest
- * prefix fix and number update
- * updated eselect dependency
- * bump
- * bump
- * bump
- * Version bump.
- * [sci-chemistry/votca-csg] updates
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: qt3support not needed anymore
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Initial commit
- * [sci-libs/wannier90] Fix blas stuff
- * sci-mathematics/htk: metadata cleanup
- * sci-mathematics/htk: fixed license filenames
- * sci-mathematics/htk: new package, #245595
- * media-gfx/librecad: more cleanup for metadata
- * media-gfx/librecad: updated metadata
- * [sys-infiniband/librxe] Add sw driver for roce
- * [sci-libs/fftw] in tree
- * Moved to tree
- * In the tree
- * Version Bump
- * Latest changes on HEAD
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Corrected doc installation, thanks James Cloos for the fix
- * Version bump.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/votca-csgapps] use default instead of tip
- * [sci-chemistry/votca-csg-tutorials] use default instead of tip
- * [app-doc/votca-csg-manual] use default instead of tip
- * Cleaned up ebuild
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: ebuild cleanup for 1.0.0_rc2
- * [app-doc/votca-csg-manual] fixed deps
- * >sci-libs/blas-reference-20
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/votca-csgapps] fixed a typo
- * [sci-chemistry/votca-csg] changes due to 1.2.1 release
- * sci-chemistry/votca-csg-apps -> sci-chemistry/votca-csgapps
- * sci-chemistry/votca-csg-apps -> sci-chemistry/votca-csgapps
- * sci-chemistry/votca-csg-apps -> sci-chemistry/votca-csgapps
- * [virtual] Add ~amd64-linux keywords
- * sci-physics/root: version bump
- * [sci-visualization/paraview] Drop old, fix building with gcc-4.6, add missing dependency on PyQt4
- * adding old blas to properly mask
- * mask blas-reference from tree
- * fix manifest
- * added num library docs
- * added virtuals
- * added gsl
- * added mpiblacs
- * added xblas
- * added cblas-reference
- * added mkl
- * added lapacke
- * added acml
- * added gotoblas2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * In main tree
- * updated package.mask
- * [sci-libs/fftw] version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Keywork-mask eigen-9999.
- * Added svn version for lapack-reference.
- * Fix Manifest.
- * Added blas-reference form bicatali overlay.
- * Added lapack-reference from bicatali overlay.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added eigen-3.0.1-r2.
- * Added eigen-9999.
- * media-gfx/librecad: ebuild cleanup for 9999 version
- * media-gfx/brlcad: fixed building issue for 9999 svn live build
- * Fixed patches
- * Fix manifest
- * fixed pkgconfig cflags
- * correct pkgconfig in openblas
- * Updated manifest for numbench.
- * numbench now uses distutils.
- * media-gfx/brlcad: removed cmake version for 7.20.2
- * media-gfx/brlcad: removed cmake ebuild for 7.20.2
- * sci-mathematics/acl2: fixed broken git merge
- * sci-mathematics/acl2: fixed manifest
- * sci-mathematics/acl2: updated metadata
- * [dev-python/numscons] obsolete
- * [sys-cluster/openmpi] redundant cd ${S} statement on line
- * [dev-java/vecmath] Useless blank line on last line
- * [dev-java/hdf-java] Trailing whitespace
- * Remove unused local USE-description: 'xblas'
- * fix metadata
- * fix metadata
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Cleaned ebuilds
- * media-gfx/brlcad: allow using of system tcl/tk
- * [dev-lang/path64] Apply fix for bug #377111, use direct path for crt1.o
- * Added sample configuration files to numbench.
- * [sci-chemistry/votca-csg] renamed boost useflag
- * [sci-libs/votca-tools] renamed boost useflag
- * Updated numbench.
- * [sys-cluster/openmpi] Add slurm support by Nicolas Bigaouette <nbigaouette@gmail.com>
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update use.local.desc
- * Fix categories
- * [sys-cluster/open-mx] Add different mtu support
- * [sys-cluster/open-mx] Add new version of open-mx
- * Masked live builds, librecad and brlcad
- * media-gfx/brlcad: fixed libpng-1.5, added version 9999 back
- * media-gfx/brlcad: No need to include cmake in deps
- * manifest
- * adjusting boehm-gc source file
- * [sci-visualization/gri] newer version in tree
- * round of manifest
- * [app-admin/eselect] Add prefix ~amd64-linux
- * [sci-libs/atlas] Add prefix ~amd64-linux
- * numbench depends on btl
- * Added BTL.
- * Restored atlas-3.8.4 from bicatali.
- * Version bump atlas
- * updating skel files
- * manifest
- * cleaning
- * [sci-astronomy/weightwatcher] switch herd
- * [sci-astronomy/stuff] switch herd
- * [sci-astronomy/skymaker] switch herd
- * [sci-astronomy/psfex] switch herd
- * [sci-astronomy/missfits] switch herd
- * [sci-astronomy/eye] switch herd
- * [sci-astronomy/casacore] switch herd
- * [dev-python/pysolar] switch herd
- * [dev-python/cosmocalc] switch herd
- * [dev-python/coords] switch herd
- * [dev-python/astropysics] switch herd
- * [dev-python/astlib] switch herd
- * [dev-python/asciidata] switch herd
- * Dependency to eselect updated.
- * Added versioned openblas. Import from the bicatali overlay.
- * Version bump. atlas imported from the bicatali overlay.
- * alternatives-2 imported from bicatali and intel-sdp corrected
- * eselect-1.2.16-r1 imported from the bicatali overlay
- * autobench renamed to numbench to avoid conflicts.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [media-libs/OpenMOIV] Initial import per bug #239321
- * Use rpath if prefix is enabled.
- * Version bump, see bug 374859.
- * Fix commiter information in the ChangeLog
- * Version bump based on bug 374709.
- * New package
- * Revert "New package"
- * New package
- * Make sure portage does not run gbrowse_metadb_config.pl otherwise sandbox violation occurs when modifying /var/www/gbrowse2/databases/users.sqlite* file, maybe we could copy these during src_install to the {}, fix there and copy back to live filesystem? Improve error handling in gbrowse_metadb_config.pl. Fix symlink creation during install procedure.
- * sci-biology/gbrowse: add missing brackets cause a perl error while exporting a PNG image
- * sci-biology/gbrowse: fix typo in an ewarn() message
- * sci-biology/gbrowse: fix typo in an ewarn() message
- * sci-biology/gbrowse: added support for --destdir, patch sent to upstream
- * sci-biology/go-db-perl to dev-perl/go-db-perl move
- * sci-biology/go-db-perl to dev-perl/go-db-perl move
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * backbone of a new package, should probably use a lot of stuff from ncbi-tools++ ebuild
- * msms: build with 3.x kernels.
- * update Manifest checksums
- * backbone of a new package, should probably use a lot of stuff from ncbi-tools++ ebuild
- * some ebuild cleanup
- * sci-biology/est2uni: pushing out more patches albeit ugly
- * version bump but still need to rewrite upstream's install procedure to prevent 'mkdir /var/lib/gbrowse2' from happening
- * dev-perl/Bio-DB-Das-Chado: new package required by sci-biology/gbrowse
- * [sci-physics/fastjet] general QA
- * sci-physics/fastjet: No need to enable plugins individually
- * sci-physics/fastjet: Added maintainer
- * sci-physics/fastjet: new package, #375575
- * [dev-lang/path64] move snapshot to g-x86
- * Add script for generating path64 snapshots
- * Mask live version of path64
- * Moved to tree
- * [sci-chemistry/acpype] Initial import
- * [dev-lang/path64] Fix SRC_URI for snapshot
- * [dev-lang/path64] Add snapshot
- * Also moved to tree
- * [sci-chemistry/ambertools] Moved to tree =D
- * [sci-chemistry/ambertools] Update patch
- * [sci-chemistry/ambertools] Fix typo
- * [sci-chemistry/ambertools] Updates for ambertools and gcc-4.6
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Add missing LDPATH to env file
- * now in main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Removed lpsolve, better version is in tree.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fixed Manifest
- * [dev-lang/path64] Add valgrind IUSE for debugging
- * Move dev-lang/ekopath-bin to dev-lang/ekopath
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] Unset all env vars that may cause trouble, prevent stripping source when build with Release, clean up
- * Migrating gap-guava from s-o-g to sci: an example of gap package.
- * Addd package.use.mask. Mask dev-lang/path64[assembler]
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] Change lib -> get_libdir
- * [dev-lang/path64] gcc:4.2 is no longer a strict dep
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] Unset all fortran vars
- * [dev-lang/path64] Fix fortran specific env handling
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] Add env file
- * [dev-lang/path64] Promote native to prefereed, add assembler flag (not working at the moment), remove needless dep on gcc for native
- * Grap some fedora stuff, fix shadrers patch for current head
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-lang/path64] Add fortran,openmp,debugger to IUSE
- * [dev-lang/path64] Add native use flag for release build
- * [dev-lang/path64] Initial import, only debug version (compiled with gcc) is working now
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/gromacs] sync with tree
- * [eclass] Moved cmake-utils.eclass to main tree
- * [dev-util/cmake] Moved to main tree
- * Improve variables names
- * Improve variable names
- * cmake should of course install all modules
- * Actually make it possible to disable the module removal
- * Fix missing bracket
- * Move module removal into configure phase (otherwise it might never be called), no src_prepare again
- * Same magic for LAPACK
- * Same magic for LAPACK
- * Add CMAKE_REMOVE_MODULES feature
- * Copied eclass from main tree
- * Patch FindBLAS to prefer PkgConfig over all tests, for the sci guys
- * [sci-chemistry/votca-csg] Added IUSE=extras
- * [sci-chemistry/votca-csg-apps] initial commit
- * added sci-chemistry/votca-csg-apps to package.mask
- * [sci-chemistry/votca-csg] Added IUSE=examples
- * [sci-chemistry/votca-csg-tutorials] initial commit
- * added votca-csg-tutorial to package.mask
- * Install demos through USE=examples, #374187
- * Adopt to unbundled ssm
- * inCvs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * libssm bump
- * sci-geosciences/cdat-lite: Version bump.
- * Updated SRC_URI
- * Clean up - old version that I renamed, but git didn't delete.
- * sci-geosciences/swmm: Version bump.
- * sci-mathematics/mdp: Version bump and added all supported Python versions.
- * Mmdb fix
- * media-gfx/brlcad: Fixed a config time error when building
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/brlcad: Added back virtual/jre deps
- * [dev-python/astropysics] Update dependencies, move to git repo
- * media-gfx/brlcad: folder cleanup
- * media-gfx/brlcad: Switch to cmake as supported by upstream
- * [sys-cluster/open-mx] Update init.d
- * [sys-cluster/open-mx] Update init.d
- * [sys-cluster/open-mx] Update init.d
- * [sys-cluster/open-mx] Update init.d
- * [sys-cluster/open-mx] Initial import
- * Update ocfs2
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Update ocfs2
- * app-benchmarks/autobench imported from proj/auto-numerical-bench.
- * Autobench imported from proj/auto-numerical-bench
- * media-gfx/brlcad: version bump to 7.20.2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Moved to tree
- * [sci-chemistry/icm] Version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Restored the MPI support in sci-libs/bigdft-1.2.0.2, broken by the introduction of the fortran-2.eclass.
- * sci-biology/gbrowse-2.38: added URL to Bio::DB::Sam
- * sci-biology/staden: Documented that we have to install somehow /usr/share/doc/staden/manual/gap4.index which is looked up when user accesses built-in help menu item
- * sci-biology/gbrowse-2.38: Documented dependency on >=perl-gcpan/Text-ParseWords-3.27, documented requirement of Bio::Root::Version >= 1.0069
- * Removed old version and fixed deps of live version
- * Removing long old version of normaliz
- * sci-mathematics/acl2: updated ChangeLog
- * sci-mathematics/acl2: version bump to 4.3
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * sci-biology/mira-3.2.1.20: version bump
- * Moved to tree
- * Update gentoo defconfig
- * Fix permissions
- * Enable maui support
- * Add maui with slurm and pbs integration
- * [slurm] one more update to init.d
- * Fix typo
- * Update init.d
- * Fix order
- * Add init.d and conf.d files
- * Fix cgroup location
- * Also install sample config files
- * Fix collisions with mpi implentations
- * Enable pbs compatibility
- * More cleaning
- * use eapi4 feature
- * s/contrib/contribs/
- * Enable pam module
- * Another typo with hwloc
- * Another typo with pam
- * Fix typo =D
- * [sys-cluster/slurm] Initial import
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * formated skel-metadata.xml
- * Metadata for sci-physics/elk added to appease repoman.
- * New ebuild sci-physics/elk-1.3.15 added (a GPL-3 all-electron FP-LAPW code, used for example by sci-physics/abinit developers for comparison).
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix manifest
- * Drop old OFED
- * [sys-cluster/mvapich2] Update to eapi4
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * Moved to tree
- * Keep old stuff here for some time
- * media-gfx/librecad: QA cleanup
- * [sys-infiniband/srptools] Fix ofed suffix
- * [sys-infiniband/openib] add srp tools use
- * [sys-infiniband/srptools] Add x86 keyword for srptools
- * [sys-infiniband/perftest] Some docs doesnt exist
- * [sys-infiniband/libmlx4] Tarball doesnt have changelog
- * [sys-infiniband] Fix unapck logic
- * [eclass] Fix unpack logic
- * [eclass] add missing inherit
- * [eclass] Update OFED eclass
- * [eclass,profiles] Updates to ib stuff
- * [sys-infiniband] Updates to infiniband stuff
- * [sys-cluster/mvapich2] Move and version bump for mvapich2
- * [virtual/mpi] Update virtual mpi
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [scilab-5.3.2] fixed xcos dependency
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci into guillaume
- * [media-gfx/librecad]: upgraded to EAPI=4
- * test
- * [sys-cluster/ganglia_jobmonarch] Dont need to compile
- * [sys-cluster/ganglia_jobmonarch] Drop unneded patch
- * [sys-cluster/ganglia_jobmonarch] Import per bug #297587
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Yet another quick version bump, no improvement to the ebuild. Compiles well for me but has problems testing. The fault may be just in my openmpi installation but use with caution.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Imported changes from tree
- * Restored the support for threaded fftw. Works for me. NEVER DISABLE FEATURES FOR OTHERS.
- * [sci-mathematics/scilab] fix patch name wrt bug 237572#c218
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * [sci-chemistry/jmol] Fix manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Cleanup
- * Manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Latest version.
- * Version Bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * migrate from 'git' to 'git-2'
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * Version Bump
- * Version Bump
- * removed .#Manifest.1.21
- * Cleaned ebuild, unused local USE-description
- * migrate from 'git' to 'git-2'
- * Fixed Malformed CVS Header on line: 3
- * Fixed dep on openfoam
- * no non-qt3 build available
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * migrate from 'git' to 'git-2'
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * migrate from 'git' to 'git-2'
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Cleaned ebuild
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Dropped ~ppc due to missing keywording of sci-libs/plplot, #358035
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild
- * mv 0.1-build.patch 110625-build.patch
- * Cleaned ebuild
- * Cleaned ebuild
- * Cleaned ebuild, 'http://search.cpan.org/CPAN' found in thirdpartymirrors
- * Cleaned ebuild
- * Cleaned ebuild, 'http://search.cpan.org/CPAN' found in thirdpartymirrors
- * Cleaned ebuild
- * Cleaned ebuild, no eauto* function called
- * Cleaned ebuild, unused local USE-description: 'plplot'
- * empty dir
- * 'http://pypi.python.org/packages/source' found in thirdpartymirrors
- * 'http://pypi.python.org/packages/source' found in thirdpartymirrors
- * 'http://pypi.python.org/packages/source' found in thirdpartymirrors
- * Dropped keywords because deps are missing
- * Fixed malformat CVS line in header
- * migrate from 'git' to 'git-2'
- * migrate from 'git' to 'git-2'
- * RDEPEND is not explicitly assigned -> fixed
- * migrate from 'git' to 'git-2'
- * RDEPEND is not explicitly assigned -> fixed
- * RDEPEND is not explicitly assigned -> fixed
- * RDEPEND is not explicitly assigned -> fixed
- * RDEPEND is not explicitly assigned -> fixed
- * RDEPEND is not explicitly assigned -> fixed
- * RDEPEND is not explicitly assigned -> fixed
- * Version Bump, cleaned old
- * Version Bump, cleaned old
- * Cleaned ebuild
- * Cleaned repoman issues, don't know if ebuild is still working
- * Cleaned ebuild and fixed LICENSE
- * Cleaned ebuild and fixed LICENSE
- * [sys-cluster/nullmpi] migrate to git-2
- * Cleaned ebuild and add USE description to metadata.xml
- * Cleaned ebuild and add USE description to metadata.xml
- * Added local USE description
- * [sci-chemistry/gromacs] migrate to git-2
- * [sci-physics/espresso] migrate to git-2
- * [app-doc/gromacs-manual] migrate to git-2
- * Define EAPI after inherit
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Fixed herd entry in metadata.xml
- * Cleaned ebuild
- * Some ebuild cleaning
- * Some ebuild cleaning
- * Some ebuild cleaning
- * Some ebuild cleaning
- * Some ebuild cleaning
- * Moved to EAPI=4
- * Manifest fix
- * SOme ebuild cleaning
- * Moved from 'git' to 'git-2'
- * Corrected ChangeLog
- * Corrected ChangeLog
- * Corrected ChangeLog
- * Cleaned ebuild
- * Fixed Manifest and cleaned ebuild
- * Shorten Summary
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Manifest fix
- * Fix repoman warnings
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Mask sci-visualization/vtkPOFFReader as paraview-3.8 is masked
- * QA on package.mask
- * sources are dead
- * Sources not available anymore
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Dropped ~ppc as many deps aren't keyworded
- * Dropped ~ppc as many deps aren't keyworded
- * removed uneeded entry
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * broken old version
- * QA on why
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * mask sci-libs/pfft as fftw-3.3 is masked
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Fix CVS Header , remove LICENSE from installation
- * Sort inherit and/or USE
- * metadata.xml added
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * EAPI bump
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Version Bump
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Streamlined fortran-2 eclass usage
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Sort inherit and/or USE
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/mira: libtool.m4 fix so we can safely run eautoreconf and a version bump
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * Streamlined fortran-2 eclass usage
- * And one more
- * One more fix
- * Fix typo
- * Update cluster patches to support XRC on mlx4 devices
- * Add new cluster sources
- * Update init.d
- * Make use of external locking optional
- * Update deps
- * Update patches
- * Update ocfs2
- * Update ocfs2
- * [infiniband] Add ib support for dhcp
- * [sci-chemistry/gromacs] only USE=fkernels needs fortran
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added fortran-2.eclass support
- * Tweak the ebuild
- * commit
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Added fortran-2.eclass support
- * Moved to tree
- * commit
- * commit
- * Added fortran-2.eclass support
- * Make cvxopt use pkg-config to set BLAS/LAPACK, add glpk useflag description in metadata.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Final changes before move to the main tree.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/gromacs] switch to cmake
- * media-gfx/librecad: version bump to 1.0.0rc1
- * Mikes suggestions
- * Version BUmp, added missing die
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/scilab-5.3.2.ebuild: ebuild fixes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci into guillaume
- * new version of paraview (3.10.1)
- * Last changes before review.
- * fortran-2.eclass nearly finished for review.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Updated to current HEAD
- * fortan-2.eclass in progress
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * move to pkg_pretend for EAPI=4
- * [fortran-2.eclass] remove unnecessary quotes
- * fix typos
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix pkg-config files, #369263
- * [fortran-2.eclass] FCOPENMP -> FC_NEED_OPENMP
- * [fortran-2.eclass] add pathscale compiler to get_fcomp, fix tabs
- * Also export F90=$FC
- * fortran-2.eclass, added mpif* cpabilities and get_fcomp function
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fortran-2 some cosmetic changes
- * [fortran-2.eclass] tc-has-fortran -> have-valid-fortran, remove some quotes, add checks for openmp support for other compilers
- * [fortran-2.eclass] Fix openmp check to be F77 compliant
- * fortran-2.eclass added
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: fix manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/scilab] version bump to 5.3.2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge remote-tracking branch 'origin/master'
- * [sci-mathematics/scilab] version bump
- * sci-biology/sra_sdk-2.0.1: quote properly
- * sci-biology/sra_sdk-2.0.1: fix install for amd64
- * sci-biology/sra_sdk-2.0.1: a new package to access NCBI Short Read Archive
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: clean up unused files folder
- * media-gfx/librecad: added tagged version
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-java/jlatexmath-fop] Fix broken manifest
- * [dev-java/jlatexmath-fop] version bump
- * [dev-java/jlatexmath] version bump
- * [dev-java/jlatexmath] version bump
- * sci-visualization/v_sim: added maintainer email
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-visualization/v_sim: version bump to 3.6.0
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-java/hdf-java] version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/ambertools: Version bump to 1.5
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/votca-csg] use default instead of tip
- * [sci-libs/votca-tools] use default instead of tip
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/cadabra: version bump to 1.29
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-libs/votca-tools] added sqlite3 support
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix collision with dev-python/webpy, #368947
- * Fixes for latest HEAD
- * idb bump
- * [sci-misc/boinc-bin] Remove obsolete package version.
- * ipp bump
- * ipp bump
- * [sci-visualization/gnuplot] sync with tree
- * [sci-visualization/gnuplot] 4.4.3-r1 InCVS
- * [sci-chemistry/votca-csg] added boost use flag
- * Version Bump
- * Version Bump
- * Version Bump
- * Cleaned for current HEAD
- * Sandbox fix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: switch from svn to git
- * sci-biology/mira: revbump to force inclusion on dev-util/google-perftools deps
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * xdsstat-bin: bump to latest.
- * Version Bump
- * Correct for double prfix
- * Fix license dir to /opt/intel/composerxe-2011.2.137/licenses/
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Add missing path to LDPATH, #367959
- * fix intel-sdp.eclass for prefix
- * sci-biology/mira-3.2.1.17-r1: maks the devel. version until it can be compiled (due autoreconf issues)
- * sci-biology/mira-3.2.1-r1: added an extra patch for traceinfo off-by-one error
- * sci-biology/consed-20-r1: improve message on die()
- * sci-biology/consed-20-r1: improve message on die()
- * moved ipp from my overlay
- * move icc,idb,ifc from my overlay
- * added casacore
- * sci-mathematics/giac: QA fixes
- * sci-mathematics/giac: fix manifest
- * [sys-fs/zfs] Patch merged upstream
- * [sys-fs/zfs] Update patch
- * [sys-fs/zfs] Fix typo
- * [sys-fs/zfs] Fix gentoo detection
- * [sys-fs/zfs] Update to recent version
- * [sys-devel/spl] Update to recent version
- * sci-mathematics/giac: fix when no fltk
- * sci-mathematics/giac: new ebuild
- * sci-mathematics/frama-c: manifest for typo
- * sci-mathematics/frama-c: fix ebuild typo
- * sci-mathematics/why: version bump
- * sci-mathematics/frama-c: version bump
- * sci-mathematics/flocq: version bump
- * sci-mathematics/apron: fix doc building
- * dev-ml/ocamlgraph: version bump
- * sci-physics/abinit: fixed configure error for fftw3
- * sci-biology/gbrowse-2.26: fixed sanbox violation but webap-config bug pops up afterwards (happens later during install)
- * sci-mathematics/gambit: deleted from old category sci-misc
- * Correct fix for #293665
- * Another quick version bump. Minor cleanup, smp removed until usable. Bizzare 6.6.2 ebuild mostly ignored, but not deleted until discussed. In the list?
- * Version bump.
- * Version bump.
- * Version bump.
- * Version bu,p
- * Remove file with missing download.
- * Version bump
- * Remove old ebuilds since the sources have disappeared
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * manifest fix
- * Manifest fix
- * tiff -> tiff-compat
- * Moved from media-libs/tiff to media-libs/tiff-compat
- * Moved from media-libs/tiff to media-libs/tiff-compat
- * [sci-visualization/gnuplot] sync with tree and bug #366129#c11
- * [media-libs/tiff] Undo the bump (see bug #364181)
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * media-gfx/librecad: fix for gcc-4.6
- * Version bump to avoid conflict with tree
- * sci-biology/Gambit: BAM file viewer
- * Re-enable some tests
- * Enable debugging as recommended by upstream (#362655)
- * disable parallel install
- * add hppa keyword, fix herd
- * Sync with main tree. Add ~hppa, fix comments, fix #293665 fix.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/tablet-bin: added missing die call
- * [sci-physics/phun] removed: unsupported software
- * sci-biology/tablet-bin: version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * merging
- * sci-biology/tablet-bin: removed references to my /scratch filesystem
- * [sci-libs/spr] moved to main tree
- * [dev-python/idlsave] included in scipy-0.9.0
- * [dev-python/cosmolopy] now in main tree
- * Version Bump, notified by euscan
- * Version Bump, notified by euscan
- * Version Bump, notified by euscan
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * small fixes for spl
- * Small fixes for zfs
- * Fix x11-libs/goocanvas SLOT
- * Version bump. Use system hwloc. Switch to hydra instead of mpd for pm. Disable more tests as suggested by upstream. #362655.
- * add ppc and ppc64
- * Fix hardened test failure (#360185) and cleanup.
- * [sci-chemistry/gromacs] sync with tree
- * More zfs updates
- * more zfs stuff
- * updates to zfs
- * [sys-fs/zfs] Add init.d from bug #365435
- * media-gfx/librecad: initial port, #344791
- * sci-biology/tablet-bin-1.11.02.18: fixed ebuild for the package and version bump
- * Version BUmp
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix include path for zfs and spl
- * Fixed underlinking problems
- * Cleaned old patches
- * Fixed patches for current HEAD
- * Version Bump, Minor corrects to fullfil repoman QA
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/consed-20-r1: added nLine.h patch from upstream to fix negative line numbers in phd files wrapped in phd.ball.1
- * Make zfs install to / not to /usr
- * sci-physics/abinit: Removed old versions
- * Fix broken manifest
- * [sci-physics/espresso] live ebuild update
- * sci-physics/abinit: version bump to 6.6.2
- * [sci-physics/espresso] live ebuild update
- * [sci-physics/espresso] added live ebuild
- * updated package.mask
- * update for petsc-3.1_p8 from bug 53386
- * [media-gfx/brlcad] Moved to tree, updated metadata
- * [sys-cluster/scalasca] accept flags
- * sci-libs/vtk moved to tree and unmasked.
- * sci-mathematics/gambit: new category, moved from sci-misc
- * [sys-cluster/scalasca] updated homepage
- * Moved to tree
- * Made ebuild tree ready
- * sci-misc/gambit: Initial port. #47670
- * media-gfx/brlcad: Added dev-tcltk/tkpng to RDEPEND, #363251
- * [sys-fs/zfs] Initial import from sping overlay
- * [sys-devel/spl] Initial import
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/acl2: have to build books in place
- * Fix ups
- * Version Bump
- * Fix for python ABI stuff
- * Fix for python ABI stuff
- * Fix for python ABI stuff
- * Fix for python ABI stuff
- * Fix for python ABI stuff
- * media-gfx/brlcad: version bump to 7.18.4
- * sci-mathematics/acl2: fixed certificate dir
- * Slightly streamlined ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Make working with py-2.7
- * Added missing RDEPEND
- * Fixed for latest upstream release
- * Merge branch 'master' of ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/acl2: industrial strength theorem prover, #49316
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * Updated to latest upstream tarball, #363283
- * sci-mathematics/cadabra: version bump to 1.28. Fixed dev-cpp/pangomm slot to 1.4
- * [app-doc/gromacs-manual] updated
- * [sci-chemistry/gromacs] remove 4.0.* (EOM)
- * v_sim: version bump to 3.5.2
- * Fix FFTW3 lib path on amd64. Need more work to get C/Fortran bindings
- * version bump; bug #248372. Restrict netcdf deps to current stable in tree
- * sci-geosciences/seawater: Version bump
- * sci-geosciences/swmm: Correcting 'Manifest'
- * sci-geosciences/pydap: Version bump.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Corrected Slot of fltk to 1
- * Corrected Slot of fltk to 1, thanks Jan M. Simons noticing this
- * [sys-cluster/scalasca] version bump
- * Fixed typo in emboss.eclass
- * Useless blank line on line: 13
- * Fix to latest head
- * Missing script dirs included
- * Adding keywords for testing by wider audience.
- * Last fix for 64bitness
- * Corrected slot of fltk, #360641
- * Move sci-chemistry/stdinchi to sci-libs/inchi
- * Add updates for sci-chemistry/inchi
- * sci-libs/inchi moved to tree
- * sci-chemistry/openbabel* moved to tree
- * Install into vendor dir
- * Moved swig to DEPEND
- * Do not in gzipped libs, thanks rei4dan noticing me
- * sci-chemistry/stdinchi removed. Duplication
- * openbabel-perl: Fix install in sandbox
- * openbabel-python: Add Python3 iterator and wrap OBInternalCoord patches
- * Semi broken perl support for openbael
- * Cleaned ebuild
- * keyworded for ~x86
- * moved inchi from sci-chemistry to sci-libs
- * Removed python again
- * Cleaned ebuild
- * Cleaned ebuild, moved from sci-chemistry to sci-libs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix compile correctly against postgresql, #359959
- * Remove libtool if it was installed by USE=vt, bug #359917.
- * Make the USE=vt blockers conditional on being an unclasssed merge.
- * mpi.eclass: Improve handling of unclassed dep strings
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Last cleanup to emboss.eclass
- * Remove commented RESTRICT
- * Bump #349076
- * Implicit decs fix, thanks bicatali for help
- * added nco for testing
- * bumped to dev-python/pyamg-2.0.0
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Updates from review
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * Fixed for reviewed eclass
- * added petsc-3.1_p8 ebuild
- * added hypre-2.7.0b
- * [sci-chemistry/gromacs] Update ebuild for using pkg-config and blas
- * [sci-physics/root] now in main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Straighten ENV
- * Fixed doc installation path
- * Fix malformated Header
- * Remove fortran.eclass
- * Ignore fatal patch size
- * Manifest fixed
- * New emboss_src_install used
- * Fixed Manifest
- * Last writing corrections
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * renamed embassy-ng -> emboss.eclass
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Naming of eclass changed
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-python/cosmolopy]: bump
- * Version bump. Use system sys-app/hwloc.
- * Moved media-libs/jpeg -> virtual/jpeg
- * Moved media-libs/jpeg -> virtual/jpeg
- * Moved media-libs/jpeg -> virtual/jpeg
- * Moved media-libs/jpeg -> virtual/jpeg
- * Moved media-libs/jpeg -> virtual/jpeg
- * Moved media-libs/jpeg -> virtual/jpeg
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-python/pythonocc: Manifest commit
- * dev-python/pythonocc: restrict to opencascade-6.3 dependency
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * sci-visualization/vtkPOFFReader: changed SRC_URI top ESVN_REPO_URI due to problems with md5sum's
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * EOV not needed to be set anymore
- * Ebov not needed to be set anymore
- * Last cleanings before review
- * Version Bump
- * Rev bump, to ahead of the tree ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sys-cluster/scalasca] cleanup + url updates
- * [app-doc/gromacs-manual] updated
- * updated package.mask
- * [app-doc/votca-manual] moved to votca-csg-manual
- * [app-doc/votca-csg-manual] move + update
- * [sci-chemistry/votca-csg] updated deps
- * [app-doc/votca-manual] renamed to votca-csg-manual
- * Unset DOCS as we do not have any
- * embassy-ng.eclass respects DOCS
- * Correct naming of patch
- * Move away from embass-ng_src_install
- * Move away from embass-ng_src_install
- * Move to new embassy-ng.eclass
- * embassy-ng.eclass progressing
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Move to new embassy-ng.eclass
- * Version Bump, Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Version Bump, Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Move to new embassy-ng.eclass
- * Version Bump, Move to new embassy-ng.eclass
- * Removed largefile from local USE description
- * Move to new embassy-ng.eclass
- * Version Bump, Move to new embassy-ng.eclass
- * defualt for largefile support
- * Emboss-6.3.1 imported from tree
- * [sci-mathematics/octave-epstk] in the main tree
- * sci-visualization/paraview: removed OFF patch as this is now an external plugin
- * sci-visualization/vtkPOFFReader: New ebuild for bug 358077
- * sci-libs/geom: New ebuild from bug 358061
- * sci-libs/gmsh: Added sci-mathematics/petsc support
- * [sci-libs/votca-tools] 1.1.1 InCVS
- * [sci-chemistry/votca-csg] 1.1.1 InCVS
- * [sci-chemistry/gromacs] added fixes from 4.5.3-r4
- * [ambertools] apply upstream bugfixes
- * Fix another typo with symlinks
- * Fix another typo with symlinks
- * Fix another typo
- * [sci-chemistry/ambertools] Fix typo
- * [sci-chemistry/ambertools] Fix issues with path
- * A quick bump to sci-physics/abinit-6.6.1. Some cleanup, some mess. Switched from fftw2 to fftw3. OpenMP still broken.
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * QA things
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * QA STUFF
- * Correct Slots for gtk 3 introduction to tree
- * QA STUFF
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * QA things
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Correct Slots for gtk 3 introduction to tree
- * Fix typo
- * [sci-chemistry/ambertools] now it should work
- * [sci-chemistry/ambertools] Now it compiles =D
- * More updates and fixes
- * Initial import =) may not work
- * sci-biology/staden-2.0.0_beta8: provide LDPATH=/usr/lib/staden through /etc/env.d/99staden to /etc/ld.so.conf
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/gap2caf-2.1.0: ebuild cleanup
- * [sci-libs/armadillo] move to the main tree
- * healpix not yet ready
- * [sci-libs/spooles] in main tree
- * [media-gfx/freecad] Moved to main portage tree
- * [media-gfx/freecad] Added comment about nature of parallel make failures
- * sci-biology/amos-short: new package
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/smalt-bin-0.5.1: version bump
- * [media-gfx/freecad] Add -DBOOST_FILESYSTEM_VERSION=2 workaround for boost-1.45
- * [media-gfx/freecad] Circumvent parallel make issues :(
- * [media-gfx/freecad] Version bump; added required RESTRICT with comments; many cleanups and enhancements
- * [media-gfx/freecad] pkgmove from sci-misc to media-gfx category
- * [dev-python/pivy] Moved to main tree
- * [sci-chemistry/votca-csg] switched to cmake
- * [sci-libs/votca-tools] switched to cmake
- * [sci-chemistry/votca-csg] version bump
- * [sci-libs/votca-tools] version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Adding noarch ebuild - work in progress.
- * Adding noarch ebuild - work in progress.
- * os-mpi moved to tree as native-mpi
- * [os-mpi] update os-mpi for prefix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [mpi] Add os-mpi for prefix support
- * Coot live fixes
- * sci-biology/smalt-bin: an alternative to ssaha2 for even shorter reads
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/bambus: added goBambus.pl script and perl/python dependencies
- * [sci-libs/opencascade] Moved to main tree.
- * sci-biology/ssaha2-bin: new package, the GRL license text extracted from the saha2-manual.pdf seems kind of ... not like a real License text
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/ssaha2: new package, the GRL license text extracted from the saha2-manual.pdf seems kind of ... not like a real License text
- * Add epatch_user back for gromacs live ebuilds
- * sci-mathematics/frama-c: fix install doc
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Cleaned ChangeLog
- * Version Bump
- * Version Bump
- * Live ebuild updated
- * [sci-physics] Fix manifests
- * [sci-electronics/tnt] Assigned to sci-electronics herd
- * [sci-electronics/tnt] New application
- * A supporting utility of sci-physics/abinit to convert the data generated by sci-physics/atompaw for the use with abinit
- * A program to generate atomic data for the Projector Augmented Wave method of DFT calculations. Added to support sci-physics/abinit
- * sci-biology/est2uni: current Manifest file
- * sci-biology/est2uni: working EST annotation package
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/est2uni: env.d/ file
- * [sci-visualization/gnuplot] updated deps
- * sci-mathematics/frama-c: temporary retro-compatibility patch
- * sci-mathematics/frama-c: keep previous version for now
- * [sci-visualization/gnuplot] removed pdf use flag + bump to EAPI=3
- * moved to g-x86
- * moved to g-x86
- * sci-biology/tgicl: make sure we call perl and not perl-5.15.2 directly
- * [sci-chemistry/votca-csg] fixed a typo
- * [app-doc/votca-manual] fixed install location
- * [app-doc/votca-manual] initial commit
- * updated package.mask
- * [sci-chemistry/votca-csg] version bump
- * [sci-libs/votca-tools] version bump
- * [sci-chemistry/gromacs] 4.5.3-r3 InCVS
- * sci-biology/OBO-Edit: added license file
- * sci-biology/OBO-Edit: added license file
- * sci-biology/est2uni: EST assembly+annotation: a perl-based analysis pipeline including php-based web interface
- * sci-biology/picard-tools: Java-based command-line utilities manipulating SAM/BAM files with Java API (SAM-JDK)
- * sci-biology/OBO-Edit: Java-based editor optimized for the OBO biological ontology file format
- * sci-biology/swissknife: fixed Gentoo Copyright text
- * sci-biology/swissknife: Perl library of modules to manipulate SwissProt flatfiles
- * sci-biology/go-db-perl: Gene Ontology Database perl API
- * sci-biology/ONTO-PERL: tools to manipulate OWL- and OBO-formatted files
- * [sci-chemistry/gromacs] version bump
- * sci-biology/tgicl: metadata checksum fix in Manifest
- * sci-biology/clview: metadata checksum fix in Manifest
- * sci-biology/zmsort: metadata checksum fix in Manifest
- * sci-biology/nrcl: metadata checksum fix in Manifest
- * sci-biology/cdbfasta: metadata checksum fix in Manifest
- * sci-biology/tclust: metadata checksum fix in Manifest
- * sci-biology/psx: metadata checksum fix in Manifest
- * sci-biology/sclust: metadata checksum fix in Manifest
- * sci-biology/seqclean: description line cleanup
- * sci-mathematics/gappalib-coq: sci-mathematics/flocq added as a dependency
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/gappa: bogus manifest fixed
- * sci-biology/lucy: a sequencing masking tool
- * sci-biology/staden-2.0.0_beta8: new release
- * [sci-chemistry/gromacs] fixes bug #339837
- * sci-biology/estscan: added missing EAPI line
- * sci-biology/: fixing 3 of my Manifest files
- * sci-biology/align_to_scf: fix sed trickery
- * sci-biology/estscan: added the license text
- * sci-biology/tablet-bin: version bump
- * sci-biology/estscan: new package, something wrong with IUSE?
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/jalview: version bump
- * sci-mathematics/why: version bump
- * sci-biology/gbrowse: version bump, more DEPS added, tiny webappconfig improvement
- * sci-mathematics/frama-c: previous beta compatible why
- * sci-mathematics/frama-c: clean-up
- * sci-mathematics/frama-c: version bump
- * dev-libs/simclist: version bump
- * dev-ml/ocamlgraph: version bump
- * sci-mathematics/gappalib-coq: version bump
- * sci-mathematics/flocq: new package
- * [sci-chemistry/votca-csg] version bump
- * [sci-libs/votca-tools] version bump
- * [sci-chemistry/gromacs] qa fixes
- * sci-mathematics/gappa: version bump
- * sci-mathematics/apron: doc generation for cxx fixed using dev-tex/rubber
- * [sci-chemistry/votca-csg] 1.0.1 moved to the main tree
- * [sci-libs/votca-tools] 1.0.1 moved to the main tree
- * [sci-chemistry/votca-csg] version bump
- * [sci-libs/votca-tools] version bump
- * Moved sci-math/jags to main tree per bug 317741
- * moved to g-x86
- * sys-cluster/heartbeat moved to main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * sys-cluster/keepalived and pacemaker-gui bumps
- * A simple version bump. An unsolved problem with fortran flags when USE="+netcdf -mpi" circumvented. Minor changes to reports and logs when testing
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [ocfs2] another small update to make it works
- * Update deps for ocfs2
- * [ocfs2] add new ebuild
- * mpi.eclass: support EAPI 3 and 4.
- * Bump EAPI thanks to scarabeus.
- * Fix SRC_URI and general cleanup
- * Bump, #349076. Re-enable tests with mpi-threads. Add prefix stuff.
- * solve file collision in paraview
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Changes in vtk's handling of python-2.7
- * Improvements to paraview-3.8.1
- * Fix up ebuild per bug #344721. Thanks to Joel Berendzen.
- * [sys-block/tgt] Moved to tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * housekeeping in vtk
- * New addition, written by me
- * USE mask sse in sci-chemistry/almost, works only on 32bit
- * [sci-chemistry/votca-csg] added doxygen docu
- * [sci-libs/votca-tools] added doxygen docu
- * sci-biology/tablet-bin: updated ebuild
- * sys-block/tgt version bump
- * [sci-physics/espresso] updated homepage
- * [sys-cluster/nullmpi] added live ebuild
- * updated package.mask
- * [sys-cluster/nullmpi] added support for shared libs
- * [virtual/mpi] initial version with sys-cluster/nullmpi support
- * [sci-chemistry/votca-csg] fixes build with =gromacs-9999
- * [sci-chemistry/gromacs] added back gsl/xml useflag
- * [sci-chemistry/gromacs] fixed some typos
- * Added missing env stuff
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Manifest fix
- * [sci-chemistry/gromacs] add back live manual
- * Just a forgotten update of Manifest
- * The typo of getFC corrected to . By Jérôme Borme <jerome.borme@gmail.com>
- * The typo of getFC corrected to . By Jérôme Borme <jerome.borme@gmail.com>
- * [sys-cluster/ceph] Moved to tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added missing variable installation in revbump
- * Fix tests
- * sys-cluster/ceph-0.24.1 version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * The conditional use of several configure options tweaked to actually work even if a USE flag is unset. Reported by Jérôme Borme <jerome.borme@gmail.com>
- * Fixing categories, #351818
- * Corrected the sources location. Thanks to jerome.borme@laposte.net from bug 329429.
- * [sci-chemistry/gromacs] qa fixes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * A libxc ebuild for sci-physics/abinit
- * A FoX ebuild for sci-physics/abinit
- * An ETSF IO ebuild for sci-physics/abinit
- * A bigDFT ebuild for sci-physics/abinit; not the latest version but the abinit compatible one.
- * An ebuild for abinit-6.4.2 using external dependencies as proper Gentoo packages. Based on bug 249493, still work in progress. With USE="smp" compiles, but crashes.
- * A wannier90 ebuild for sci-physics/abinit
- * An ebuild for abinit-6.4.2 using external dependencies as proper Gentoo packages. Based on bug 249493, still work in progress. With USE="smp" compiles, but crashes.
- * [sys-cluster/pacemaker] cib needs to build before pengine
- * [sys-cluster/pacemaker] further fixes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Also get rid of valpha.tar during installation
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update manifest
- * [sys-cluster/pacemaker] add bits missed in previous commit
- * [sys-cluster/pacemaker] fix lib ordering wrt #351329. Thanks to Rafał Mużyło <galtgendo@o2.pl> for suggestion.
- * [sys-cluster/pacemaker] fix autotools issues, patch send upstream
- * [dev-vcs/mercurial-server] InCVS
- * Unmask icm-3.7
- * Correctly manage openmp and otehr linking
- * sys-cluster/pacemaker dependency bump and LIBADD patch
- * sys-cluster/pacemaker-gui bump
- * sys-cluster/pacemaker-gui upstream revision bump
- * Fix repoman warnings and missing manifest
- * synchronize polybori with s-o-g overlay
- * Remove singular - now in tree
- * sci-libs/cgnsfoam: Version bump
- * sci-libs/libcgnsoo: Version bump
- * sci-visualization/paraview: Added 2nd python path
- * sci-libs/gmsh: delete old version, added some USE-flags
- * sci-libs:/cgnslib: delete old version, made hdf5 really apply again
- * moved to g-x86
- * more cleaning
- * more removing
- * removed badly committed files
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/gromacs] suffix fix
- * [sci-chemistry/gromacs] 9999 version uses cmake-utils eclass
- * [sci-chemistry/votca-csg] does not build with gromacs-9999 anymore
- * [sci-chemistry/gromacs] 4.5.9999 now uses autotools-utils eclass
- * [sci-libs/lpsolve] fixed manifest
- * [dev-python/pymvpa] added manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/consed-20: new ebuild, see bugs #346801 (fixed), #351133 (fixed), #351152 (still affects amd64)
- * scikits now in in main tree
- * sci-biology/staden: again dropping arches from live ebuild ;-)
- * sci-biology/staden: fixed my email address in metadata.xml
- * mask root svn
- * condor bump
- * root fixes
- * masked root svn
- * ÿorick bump
- * maxima gone in tree
- * sci-biology/consed-bin: fixing a typo and '' expansion, see bug #312893
- * sci-biology/consed-bin: resurrecting an ebuild for binary package, was bug #253451
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Some QA on ebuild style
- * Moving www-apps/SwishE to www-apps/py-swish-e
- * Moving www-apps/SwishE to www-apps/py-swish-e part II
- * Moving www-apps/SwishE to www-apps/py-swish-e
- * Some QA on ebuild style
- * moved to g-x86
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * sci-biology/tablet-bin: added licence file
- * sci-biology/tablet-bin: some QA fixes, still broken ebuild
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * fixed my email in affected metadata.xml files
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/align_to_scf: QA fix, changed pkgdescr and created a README file
- * updated to latest petsc patchset
- * Fix manifest and ebuild syntax
- * Mask sci-biology/tablet-bin #348029
- * sci-biology/roche454ace2caf: improved description and polished deps
- * sci-biology/roche454ace2caf: added ksh dependency
- * sci-biology/align_to_scf: tools needed by roche454ace2caf
- * license file for align_to_scf, roche454ace2caf, sff_dump
- * sci-biology/roche454ace2caf: convert ace files to gap4 (part of staden v1)
- * sci-biology/align_to_scf: new package
- * sci-biology/sff_dump: convert sff files into fasta/qual formats
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added missing env
- * [sys-cluster/keepalived] version bump
- * [sys-cluster/corosync] version bump
- * Version Bump
- * Moved to main tree.
- * Moved to tree.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix typo in metadata.xml
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * synchronize cvxopt with the sage-on-gentoo overlay
- * Patch vtk for python-2.7
- * Several fix for paraview, drop old.
- * [sys-cluster/heartbeat] version 3.0.4 bump
- * fix bug #348783 about libnet dep on sys-cluster/cluster-glue and sys-cluster/resource-agents
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/bamtools: two current ebuilds
- * bamtools/bamtools-0.7.47: removed old version
- * To main tree
- * [sci-physics/root] bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix for fortran detection, thanks Arfrever pointing on it
- * [sci-libs/exodusii] build shared libs, added test USE flag
- * Fixing for current HEAD
- * [dev-vcs/mercurial-server] version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/dolfin] Initial import.
- * moved to main tree
- * [sci-chemistry/votca-csg] now using autotools-utils eclass
- * [sci-libs/votca-csg] removed link to live ebuild
- * [sci-libs/votca-tools] using autotools-utils eclass
- * [sci-libs/votca-tools] removed link to live ebuild
- * Fortran detection fixes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/bamtools: new package
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fortran.eclass fixes
- * fortran.eclass fixes
- * fortran.eclass fixes
- * Correct handling of OpenMp support
- * sci-biology/apollo: added dep on java vm
- * Fix for fortran.eclass removal
- * Removal of fortran.eclass, #348851
- * Removal of fortran.eclass, #348851
- * Removal of fortran.eclass, #348851
- * Removal of fortran.eclass, #348851
- * Removal of fortran.eclass, #348851
- * Removal of fortran.eclass, #348851
- * again
- * Update mask
- * Mask new icm
- * Update ebuild
- * fix typo
- * Add new icm
- * Make tiff sloted for binary compatibility
- * [sci-libs/exodusii] Initial import.
- * Update openmm stuff
- * [dev-python/viper] Initial import.
- * [dev-python/instant] Initial import.
- * [dev-python/ffc] Initial import.
- * [dev-python/fiat] Initial import.
- * [dev-python/ufl] Initial import.
- * Fix maniifest
- * Some QA, src_configure not needed
- * [sci-mathematics/armadillo] update license, make BLAS, LAPACK, Boost hard dependencies
- * [sci-libs/gmsh] Manifest update
- * [dev-python/pyamg] added ChangeLog, QA fixes
- * [dev-python/meshpy] added ChangeLog, QA fixes
- * [sci-mathematics/ufc] added ChangeLog, QA fixes
- * [sci-libs/armadillo] added ChangeLog
- * QA fixes
- * [sci-libs/gmsh] bump to 2.5.0
- * [sci-mathematics/ufc] Initial commit for UFC 1.4.2
- * [dev-python/cvxopt] Initial commit for CVXOPT 1.1.3
- * [sci-libs/armadillo] Initial commit for Armadillo 1.0.0
- * [dev-python/meshpy]: Initial commit for MeshPy 0.91.2
- * added ebuild for PyAMG 1.0.0
- * [sys-cluster/scalasca] version bump
- * [sys-cluster/cluster-glue] moved to gx86
- * [sys-cluster/cluster-glue] 1.0.7 version bump
- * sci-biology/wcd: sequence clustering tool
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/apollo: added java classes to inherit
- * sci-biology/argo-bin: new package, current 1.0.31 bin-only version
- * sci-biology/argo: new package, an old 1.0.24 src version
- * sci-biology/apollo: dropped keywords from live ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/apollo: dropped actually the whole keywords line from the live ebuild
- * sci-biology/apollo: dropped actually the whole keywords line from the live ebuild
- * sci-biology/apollo: dropped keywords from the live ebuild
- * sci-biology/apollo: new package
- * update digest
- * Remove keywords for live ebuild
- * sci-biology/tgicl: updated package description
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/amos: live ebuild
- * Moved to tree
- * [sci-chemistry/gamessq] Moved to tree
- * Move changelog
- * Import dev-java/vecmath with history and remanifest
- * Remove old. (Portage version: 2.2_rc48/svn/Linux x86_64)
- * Add ~x86.
- * bump to vecmath-1.5.1
- * Create repo_name in java-overlay and get rid of Manifest1 digest files.
- * Changes to overlays according to http://overlays.gentoo.org/proj/java/wiki/March_2007_Summary#Changesinoverlays.
- * sci-biology/tgicl: einfo additions
- * sci-biology/tgi-tools: dropped altogether, use tgicl and its deps instead
- * sci-biology/tgicl: add quotes
- * sci-biology/tgicl: TIGR tgicl clustering tools
- * sci-biology/zmsort: TIGR tgi-tools package
- * sci-biology/seqclean: TIGR tgi-tools package
- * sci-biology/tclust: TIGR tgi-tools package
- * sci-biology/sclust: TIGR tgi-tools package
- * sci-biology/psx: TIGR tgi-tools package
- * sci-biology/nrcl: TIGR tgi-tools package
- * sci-biology/clview: an assembly .ace file viewer from TIGR Gene Indices project tools
- * sci-biology/cdbfasta: part of TIGR tgi-tools
- * sci-biology/cap3-bin: EST assembler (no sources ever available)
- * sci-biology/jalview: version bump
- * sci-biology/staden: removed unused patches
- * sci-biology/staden: removed unused patches
- * sci-biology/staden: live SVN and one for upcoming 2.0.0b8
- * sci-biology/caftools-2.0.2: newer version but lacking manpages and caf_find_misassemblies
- * sci-biology/caftools: added einfo() line
- * sci-biology/caftools: new package, bug #259842
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/autoeditor: automatiucally correct basecalling errors using multiple sequence alignments of the Sanger-based reads
- * sci-biology/bambus: assembly scaffolder
- * sci-biology/tigr-foundation-libs: TIGR C++ files used by bambus and autoEditor
- * Bumped in Cvs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/votca-csg] version bump + clean up
- * [sci-libs/votca-tools] version bump + clean up
- * depends on scikits
- * depends on scikits
- * depends on scikits
- * depends on scikits
- * depends on scikits
- * bump learn
- * added a common scikits package
- * added jags
- * [sci-libs/votca-tools] version bump
- * [sci-chemistry/gabedit] fix Manifest wrt bug 347697
- * [sci-chemistry/gabedit] Version bump to 2.3.3
- * sci-visualization/paraview: fixed python path
- * Fixes for python stuff
- * New addition
- * New addition
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added missing deps on media-fonts/font-sun-misc and x11-apps/xset.
- * removed stale doc useflag. Fix by Guillaume Horel in bug 301048.
- * sci-visualization/paraview: added new OpenFOAM patch
- * sci-libs/mesquite: Initial commit
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-biology/tigr-assembler: fix quoting issues (QA)
- * sci-biology/tigr-assembler: respect CC from environment, provide run_TA script as a bourne-shell script and not in csh syntax, provide src_test()
- * added ~amd64
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dropped erroneous description line
- * initial and working ebuild
- * dropped erroneous description line
- * Version bump and lots of ebuild improvements, it works for me now
- * Version bump per bug #311857, added description and longdescription to metadata
- * Update manifest
- * [sci-chemistry/gromacs] Moved to tree
- * use original hypre download link
- * disabled libpetsc.so RPATH
- * fixed metadata
- * added petsc parmetis and hdf5 support
- * fixed petsc hypre support
- * reworked hypre ebuild
- * [sci-chemistry/gromacs] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-geosciences:pydap_responses_xls: Version bump and change in numbering.
- * sci-geosciences/pydap_responses_wms: Version bump.
- * sci-geosciences/pydap_responses_matlab: Version bump and normalization of version numbering for download.
- * sci-geosciences/pydap_responses_kml: Version bump.
- * Version bump.
- * sci-geosciences/pydap: Version bump.
- * [sys-cluster/pacameker] 1.0.10 moved to g-x86
- * [sys-cluster/glusterfs] moved to g-x86 wrt #345427
- * sci-geosciences/xtide: Version bump.
- * sci-geosciences/libtcd: Version bump.
- * sci-geosciences/harmonics-dwf-free-noncomm: Version bump.
- * sci-geosciences/harmonics-dwf-free: Version bump.
- * Revert "Sip patch from bgo", fixed upstream
- * inCvs
- * QA on quoting
- * fperms sucks, because it could not handle wildcards
- * Better goocanvas detection
- * Added x11-libs/goocanvas as DEPS
- * Reomove more ifles
- * Force removal of files
- * Synchonized with tree ebuild
- * Fix DEP on x11-libs/guile-gtk
- * Missing files are executable now
- * remove nmrproc.com as well
- * added missfits
- * sci-astronomy/psfex: Initial import
- * sci-astronomy/weightwatcher: Initial import
- * added eye
- * License and web site changes
- * License and web site changes
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/pest: Fixed compilation of some of the utilities.
- * sci-mathematics/pest: Version bump and minor changes.
- * sci-visualization/ferret-bin: Version bump.
- * [sys-cluster/glusterfs] better glusterd init script
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sys-cluster/pacemaker] version bump
- * sci-chemistry/openbabel: Fix testing
- * sci-chemistry/openbabel: Use system libinchi, add gui USE
- * New package sci-chemistry/inchi
- * try to add hypre support to petsc
- * added hypre version 2.4
- * removed useless python use flag
- * added hypre package
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/openbabel-python: Version bump to 2.3.0
- * sci-chemistry/openbabel: Version bump
- * Bump and cleanup. Drop keywords until #345231 is fixed.
- * Macaulay2 back in the main tree. Cleanup
- * lrslib in main tree
- * sci-libs/cdd+ moved to main tree
- * sci-math/gfan in main tree
- * sci-libs/mpir is in the main tree
- * [dev-libs/asmjit] Initial import wrt bug 345183
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/Macualay2 bump to 1.4
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-math/topcom -> main tree
- * virtual/jpeg for paraview
- * virtual/jpeg for vtk
- * cleanup for sci-math/singular (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * moved to main tree
- * [sci-biology/quicktree] Respect CC,CFLAGS,LDFLAGS. Drop empty deps, add missing die. Fix SRC_URI wrt bug 344715. Thanks to Joel Berendzen <joelb@lanl.gov> for the report.
- * [sci-biology/codonw] Respect CC,CFLAGS,LDFLAGS. Add missing die. Drop empty deps.
- * [sci-biology/miranda] Version bump wrt bug 144316. Thanks to Joel Berendzen <joelb@lanl.gov> for the report. Drop old.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-misc/flashdot moved to the main tree
- * deps updated, ebuild QA (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/frobby moved to the main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * removed octave-forge.eclass
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * revbump the news item
- * fixed octave-forge news item
- * Prefix fix
- * Install wrapper correctly, bin QA hacks
- * added news item for octave-forge removal
- * removed octave-forge packages. please use g-octave instead
- * I think I got all libsingular headers sorted now. Even so, sage still doesn't seem to build (compilation stall)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/gabedit] ebuild for new version 2.3.2 added
- * libsingular headers are completely broken so more fix
- * Fix broken libsingular headers
- * -r1 drops libsingular, -r0 small fixes. (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sys-cluster/ceph] adding reference for bug submitted upstream
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fix typo in singular-3.1.2
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-python/numpydoc] Add ~x86, restrict python-3.*. Thanks to W. Trevor King <wking@drexel.edu> for the report.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sys-cluster/ceph] Version bump. Thanks to Marcin Mirosław <bug@mejor.pl> for the report. Drop old.
- * Fix build with as-needed, simplify deps, add new use flags for debug and libatomic-ops, remove logrotate flag, don't build static libs, general cleanup. Drop old
- * sci-math/polymake added to main tree
- * sci-math/normaliz in main tree, old versions remain for Macaulay2 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-math/singular: bump to 3.1.2 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * InCvs
- * sci-mathematics/unuran: bump
- * [sci-chemistry/gromacs] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/frama-c: remove no-longer-needed patch
- * sci-libs/calculix-cgx: Version bump
- * sci-libs/calculix-ccx: Version bump
- * Readd patch accidentally deleted.
- * Restore paraview-3.8.0 while problems with 3.8.1 are sorted out.
- * adding missing patch (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Added missing patch (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * New Addition
- * Version bump to sfst-1.4, add library installation
- * sci-misc/salome-* bumped to 5.1.4 ebuild by Michael Riss in bug 330303
- * Moved sci-math/nauty and its license to main tree
- * Fix installation of internal copies of 3rd party libraries.
- * bump to paraview 3.8.1
- * Package.masking vtk-5.6.1
- * Import new vtk-5.6.1 in the overlay. package asked a there are no stable version.
- * [sys-cluster/pacemaker-gui] proposed ebuild
- * [sys-cluster/pacemaker] proposed version bump
- * glusterfs bump to better handle glusterd and gluster CLI
- * [sci-chemistry/gromacs] added natural vmd support (bug #340651#c8) (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/dcmtk] Version bump
- * Keyworded for ~-linux prefix
- * Merge branch 'master' of ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sci
- * openmp fix
- * Added missing Manifest
- * Added all files
- * Merge ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sci into HEAD
- * Real OPENMP fix
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Sip patch from bgo
- * InCvs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/molsketch] tiny changes regarding style of metadata.xml and ebuild - thanks to Justin Lecher (jlec) for giving a hint
- * reworked passing configure options to petsc config script
- * [sci-chemistry/molsketch] initial import of version 0.2.0; thanks a lot to Kacper Kowalik (Xarthisius) for direction to a proper ebuild.
- * [sci-chemistry/gromacs] multilib fix (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/gromacs] added vmd use flag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/normaliz QA (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Version Bump
- * Cleanup and gcc44 patch added, thanks Joel Berendzen
- * [sci-mathematics/singular] Added symlink needed by prefixed Sage (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * 4ti2 moved to the main tree
- * bumped to 0.5.2, ebuild by Andrzej Krentosz in bug 266249 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/netgen: Removed old version
- * sci-mathematics/netgen: Version bump
- * sci-mathematics/frama-c: various EAPI3 cleanups
- * sci-chemistry/gabedit: Version bump. Thanks to maxb <max-braeu@gmx.de>. Drop old.
- * [sci-chemistry/gromacs] renamed manual distfile (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/singular: backport fix for bug 341357
- * sci-mathematics/lrslib: QA fixes (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * Fixing dependencies of sci-mathematics/Macaulay2 (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Initial import
- * Updated ebuild for ceph
- * sci-mathematics/rngstreams: Initial import
- * sci-mathematics/prng: Initial import
- * sci-physics/root: backport upstream patch to fix build with gmake-3.82
- * [sci-chemistry/votca-csg] deps update (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/gromacs] live ebuild updates (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/gromacs] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/openmm] export OPENMM_PLUGIN_DIR (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * added changelog
- * sci-libs/amdlibm: AMD libm replacement
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-physics/root: root experimental
- * Remove non-working doins in kayali
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * mering Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-mathematics/singular] Added ~x86-linux keyword and Prefix patch (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * now in main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Fixing boost dependency and moved to qt4-r2 eclass in paraview
- * sci-math/Macaulay2-1.4 fixed SRC_URI and small updates
- * added a proposal of agenda for the first sci-electronics meeting
- * [sys-cluster/ceph] Add initscripts from bug #338008
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Removing package.mask for sci-mathematics/axiom. Bug 336789 resolved by bump and unkeywording
- * Bump: sci-mathematics/axiom-201009
- * Macaulay2-1.4_pre SVN from 1.4 branch
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Another prefix fix
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/frama-c: fixes Manifest
- * sci-mathematics/frama-c/frama-c-20100401.ebuild: EAPI3 typos
- * Prefix Fixes
- * nmrpipe update
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [app-doc/gromacs-manual]: fixed install location (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * coot openmp
- * Version Bump
- * Openmp linking patch
- * Bump jgraphx to 1.4.1.2
- * petsc-3.1-p5: appending fortran configure flags dependent on fortran use-flag
- * fixed digest
- * added petsc ebuild of latest patchset
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/frama-c: EAPI3 cleanups
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Update ceph. init scripts will come soon
- * [sci-libs/openmm] initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/openmm] masked
- * updated use.local.desc
- * [sci-chemistry/votca-csg] fixed bootstrap for live ebuild (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * ucsf license added
- * New addition
- * unio license added
- * [dev-tex/revtex] Moved to main tree
- * [dev-tex/natbib] Moved to main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [sci-chemistry/votca-csg] added live ebuild (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/votca-csg] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/votca-tools] added live ebuild (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/votca-tools] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * dev-python/numpydoc: Bump
- * Initial upload of dev-java/jlatexmat-fop Ebuild by Dmitry S. Kulyabov in bug 301048
- * dev-java/jlatexmath bump due to Dmitry S. Kulyabov in bug #301048
- * pyglet now in main tree
- * masked fftw-3.3_alpha1
- * sci-mathematics/Macaulay2-9999: Upstream fixed a bug
- * [app-portage/g-octave] moved g-octave-0.4.ebuild to the main tree
- * [sci-chemistry/gromacs] version 4.5.1 now in tree (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [dev-tex/revtex] Corrected texmf installation directory (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-tex/natbib] Corrected TEXMF installation directory (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [pmask] Mask axiom-201005 temporarily because of bug 338762
- * Bump
- * sci-math/axiom: Deps adjusted per bug 336789
- * sci-mathematics/Macaulay2-9999 with split lrslib
- * New package: sci-libs/lrslib Corresponding bug: 338685
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * [sci-electronics/gspiceui] Moved to main tree.
- * coot: Fix build error and MTZ-opening crash.
- * [sci-chemistry/gromacs] updated manifest (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-electronics/klayout] Moving to tree
- * sci-math/Macaulay2-9999 fixed
- * [sci-electronics/magic] Prepare moving this back to the tree.
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction
- * Better and more complete fix for parallel make in singular
- * sci-math/Macaulay2 live ebuild
- * One more parallel make fix for singular. Hopefully the last one.
- * [sci-misc/gcam] In main tree now.
- * New package: sci-mathematics/nauty Corresponding bug 337810
- * new license: 'nauty' for sci-math/nauty
- * Deps of Macaulay2 adjusted.
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Minor prefix corrections
- * [sci-libs/clapack] Was bumped to tree by bicatali.
- * [sci-libs/pfft] added --disable-la-files option (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Remove lam-mpi.
- * [dev-tex/natbib] Fixed description, made myself maintainer, and removed RESTRICT. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/clapack] Switch to cmake-based build system. Create install target and cmake export file. Build and run tests conditionally. Use f2c symbol prefix. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * fix repoman warnings
- * Disable support for gforker as it breaks debug builds and is being abandonded upstream, see http://trac.mcs.anl.gov/projects/mpich2/ticket/898.
- * Due to pvfs2 upstream continuously lagging behind the kernel the useflag is being dropped.
- * Fix for petsc and adding license
- * New package: sci-mathematics/petsc Ebuild due to J. M. Gottfried Corresponding Bug: 53386 (Meeh... that's from 2004!)
- * Respect LDFLAGS, #335590. Fix metadata.
- * Respect LDFLAGS #336969.
- * merge Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Some scripts are in the wrong place
- * [sci-libs/fftw] added static-libs useflag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/pfft] added static-libs useflag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/nfft] initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/pfft]: initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/fftw] Added alpha version to test mpi interface (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [dev-tex/revtex] Upstream bumped the patch level without renaming the file... (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * mpir version bump
- * Local bump of sci-mathematics/axiom-201005
- * Version Bump
- * Moved to the tree. See bug #79082.
- * [dev-vcs/mercurial-server] updated elog messages (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/normaliz bump to 2.5
- * Add missing factory headers for libsingular.
- * Imort all my fixes to singular from the sage-on-gentoo overlay.
- * Import Christopher's version of factory migrated to the autotools-utils eclass from the sage-on-gentoo overlay.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version Bump
- * Fixed patch
- * sci-geosciences/swmm: Version bump.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version bump.
- * sci-geosciences/pydap: Version bump.
- * [sci-chemistry/gromacs] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * moved to the main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * New package: sci-mathematics/Oid Ebuild due to Johannes Rauh
- * [sci-libs/mpir] Migrate to autotools-utils.eclass (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * [sci-mathematics/4ti2] Use autotools-utils.eclass (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * Fixed SRC_URI
- * Cleaned ebuild (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Version Bump, removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Keyworded for *-linux prefix (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Version bump, fixed umfpack version to <=0.5.4, reported by Philippe BAUCOUR (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Version Bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/gromacs] switch to live manual (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [app-doc/gromacs-manual] initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * updated package.mask
- * Moved to tree, see bug #135573
- * [sci-biology/clover] Trivial version bump. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Version bump, drop non-existent betas
- * Fixed lib/lib64 troubles properly in modglue (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * [sci-chemistry/bist] Moved from sunrise to sci overlay. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/gcam] Version bump. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Keyword factory ~ppc - I have the hardware.
- * Keyword cadabra ~amd64 (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * Keyword lie ~amd64 (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * Fix parallel make in modglue. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * Keyword modglue ~amd64 and apply a patch for it. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * MAke xcadabra respect FLAGS in cadabra. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * Put lie's help system under /usr/share. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * [sci-libs/m4ri] Version bump (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * sci-geosciences/pydap: Version bump.
- * sci-geosciences/pydap_responses_matlab: Version bump.
- * Version bump.
- * Bump cadabra to 1.25, drop old.
- * Bump modglue to 1.16, now respect LDFLAGS. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * [dev-python/pywcs] version bump
- * update HOMEPAGE of astrolib pkgs
- * [sci-geosciences/qgis] sync with portage ebuild
- * [sci-libs/fgsl] Initial import
- * Fix last QA issues - hopefully that solved parallel make for good. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * sci-geosciences/pydap_handlers_csv: Version bump.
- * Migrated lie to EAPI 3 and fixed various QA. (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * [sci-mathematics/normaliz] Fixed SRC_URI (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit)
- * [sci-chemistry/avogadro] drop patch
- * [sci-chemistry/avogadro] Add live ebuild for avogadro
- * Add epatch_user =)
- * bumped matio
- * sci-geosciences/pydap_responses_xls: Initial ebuild.
- * sci-geosciences/pydap_responses_netcdf: Version bump and changed SRC_URI to use mirror://pypi.
- * sci-geosciences/pydap_responses_wms: Initial ebuild.
- * sci-geosciences/pydap_responses_matlab: Initial ebuild.
- * sci-geosciences/pydap_responses_kml: Version bump, changed SRC_URI to use mirror://pypi.
- * sci-geosciences/pydap_handlers_sql: Initial ebuild.
- * sci-geosciences/pydap_handlers_netcdf: Version bump.
- * Deleted file that should have been included in much earlier commit.
- * Initial ebuild.
- * sci-geosciences/pydap_handlers_nca: Version bump and change to SRC_URI to use pypi mirror.
- * sci-geosciences/pydap_handlers_csv: Initial ebuild to serve (handle) CSV files the pydap server.
- * sci-geosciences/pydap_handlers_cdms: Changed SRC_URI to use pypi mirror.
- * sci-geosciences/pydap: Version bump. Minor edits to RDEPEND.
- * [sci-geo/qgis] remove 1.5.0. Moved to main tree.
- * scikits_learn bump
- * Fix python handling, thanks to jlec for noticing. (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix #313045, add missing libs during linking (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * cleanup (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [app-portage/g-octave] Updated the live ebuild. Added the USE flag 'doc' (Portage version: 2.2_rc67/git/Linux x86_64) (Unsigned Manifest commit)
- * [app-portage/g-octave] Version bump (Portage version: 2.2_rc67/git/Linux x86_64) (Unsigned Manifest commit)
- * [dev-python/cosmolopy] Version bump
- * [dev-python/cosmolopy] Initial import
- * [sci-chemistry/gromacs] Version bump + new manual (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [dev-python/atpy] Version bump
- * [app-portage/g-octave] Removed the PySVN dependency from the live ebuild (Portage version: 2.2_rc67/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * masked gromacs-4.5.9999
- * Correct SRC_URI in paraview-3.8.0 (Portage version: 2.2_rc67/git/Linux i686) (Unsigned Manifest commit)
- * [sci-physics/espresso] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * Keyworded for *-linux (Portage version: 2.2.00.15842-prefix/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * sci-mathematics/singular: Cloning libsingular fixes from sage-overlay, thanks to kiwifb.
- * [sci-chemistry/gromacs] doc fixes (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-physics/espresso] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/gromacs] ffamber now officialy shipped with gromacs =)
- * [dev-python/pysolar]: Initial import
- * sci-mathematics/singular: Install missing headers, upstream tarball change.
- * sci-mathematics/frobby: QA
- * vo bumped
- * [sci-geosciences/qgis-1.5.0] keyword unstable
- * New package: sci-mathematics/cipi Bug: 329169
- * [sci-geosciences/qgis] add new qgis-1.5.0 version. fix inherit in 9999
- * added inference
- * removed doc and examples flags
- * removed doc and examples flags
- * added idlsave
- * sci-mathematics/singular: Bump to 3.1.1.4 and cleanup
- * [dev-python/numpydoc]: Initial import
- * InCvs
- * InCVS
- * added cosmocalc
- * [sci-electronics/gspiceui] Version bump. Fix for wrong doc path and missing lib files if USE=examples (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-cluster/scalasca] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * initial import of astlib
- * asciitable added
- * Keywording g-cran-9999.ebuild
- * Fix manifest for g-cran
- * [app-portage/g-octave] Live ebuild updated. Already works with py3k. (Portage version: 2.2_rc67/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-mathematics/gfan: Imported updated ebuild from sage overlay
- * sci-mathematics/singular: libdir for amd64
- * runtime text relocations preliminary fix, soname added to libsingular
- * [package.mask] removed app-portage/g-octave-0.2.1
- * [app-portage/g-octave] Version bump (Portage version: 2.2_rc67/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-mathematics/singular-3.1.1.3 revbump and QA
- * [sci-astronomy/stuff]: Fixed typo in HOMEPAGE
- * [sci-astronomy/kapteyn]: Moved to gentoo-x86
- * [dev-java/jeuclid-core,sci-biology/jalview] Removed pmask for packages with dependencies in the java overlay. For now.
- * Version bump. Fixes only bug wrt buffer overflow on long filenames. (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * Merge branch 'singular'
- * sci-math/singular: Experimental support for libsingular
- * [sci-libs/omalloc]: Make shared libs, fix tests, fix install paths
- * Macaulay2-1.3.1-r4: Various QA, static libfac/factory, respect CFLAGS, optimization USE-Flag
- * [sci-libs/cgnslib] Made the hdf5 patches apply again. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * In tree
- * Imported to tree
- * [sci-visualization/nodemon] Silenced repoman. FIXME: it looks like the pbs switch is not implemented properly. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-visualization/paraview] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/gfan]: Respect CXX, LDFLAGS, fix build with GCC-4.5
- * [sci-libs/factory]: fix as-needed issue and parallel build
- * [sci-mathematics/why] Silenced repoman; dropped ~sparc since dependencies cannot be fulfilled. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/frama-c] Dropped ~sparc since dependencies cannot be fulfilled. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/cgnslib] Removed hdf5 functionality in ...3 since the required library versions are not available anymore. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-java/jeuclid-core] Masked for removal since dependencies cannot be fulfilled
- * [package.mask] Mask sci-biology/jalview for removal
- * [sci-biology/jalview] Masked for removal (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-infiniband/libnes] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-infiniband/libmlx4] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-infiniband/libibvpp] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-infiniband/libibcm] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-infiniband/openib-srptools] Silenced repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/procheck] Silence repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/phaser] Silence repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/openbabel-ruby] Silence repoman. Drop openbabel-ruby-2.2.0 since dependencies cannot be fulfilled anymore. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/openbabel-python] Silence repoman. Drop openbabel-python-2.2.0 since dependencies cannot be fulfilled anymore. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/openbabel-perl] Silence repoman. Drop openbabel-perl-2.2.0 since dependencies cannot be fulfilled anymore. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/jligand] Silence repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Fixed handling of long path and filenames (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-libs/factory]: remove old
- * [sci-libs/factory]: Make shared libs, fix install paths, QA
- * [sys-infiniband/libibmad] Shortened description. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-cluster/ceph] Shortened description (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/octave-forge-communications] Silence repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/octave-forge-splines] Added metadata.xml (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/octave-forge-octgpr] Added metadata.xml (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Bump mpir to version 2.1.1.
- * Import an enhanced vtk-5.6.0 with support for database and ffmpeg.
- * Import gl2ps with automagic dependencies fix.
- * [sci-chemistry/gromacs] fix for bug #301854 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/why: Version bump
- * sci-mathematics/frama-c: Version bump
- * dev-ml/ocamlgraph: some RDEPEND clean-ups
- * sci-mathematics/*: some ChangeLog clean-ups
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * trivial fixes, keyword x86
- * sci-mathematics/singular: Even better readline support and QA
- * sci-mathematics/singular: readline support fixed
- * [sci-geosciences/qgis-9999] add live ebuild to test version 1.5 (to be released soon)
- * Bump sci-libs/libfac-3.1.1
- * Bump sci-libs/factory-3.1.1
- * dev-ml/ocamlgraph: depend fixes
- * [sys-infiniband/openib-drivers]: no /sbin/lsmod symlink for >sys-apps/module-init-tools-3.6
- * [app-portage/g-octave] masked version 0.2.1, due to broken SRC_URI
- * [app-portage/g-octave] live ebuild now using the git repository (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * [sci-libs/omalloc]: Cleanup
- * new package: sci-libs/omalloc
- * [sci-chemistry/gromacs]: fortran fix (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [dev-tex/revtex] Needs a newer natbib than in texlive 2009... (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-tex/natbib] Added RESTRICT=primaryuri (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-tex/natbib] New package, updated natbib version required by revtex-4.1 (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/gromacs] Fixes for Bug #326331 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [dev-tex/revtex] Version bump to enforce reinstallation (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-tex/revtex] Added installation of the required rtx files (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/finomaton] ChangeLog update
- * [sci-misc/finomaton] Silence repoman; fix metapost dependency (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/nltk] Silence repoman; drop ~amd64 since dependencies cannot be fulfilled. No keywords left. :( (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/stanford-tagger] Silence repoman (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/stanford-parser] Silence repoman (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/ltl2ba] Silence repoman. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [licenses] Added CeCILL-2.0 as referenced by sci-mathematics/gappa
- * [sci-mathematics/gappa] Silence repoman; improve license description; move doc generation dependencies to RDEPEND (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/apron] Silence repoman; drop ~sparc since dependencies cannot be fulfilled; move doc generation dependencies to RDEPEND (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * dev-ml/ocamlgraph: version bump 1.5
- * Local bump of sci-math/singular
- * sci-mathematics/pff: QA fixes
- * sci-mathematics/gappalib-coq: Version bump 0.13
- * sci-mathematics/gappa: Version bump 0.13.0
- * sci-mathematics/gappalib-coq: QA fixes
- * sci-mathematics/gappa: QA fixes
- * sci-mathematics/apron: building process fixed for the latest sources
- * Added longdescription to metadata.xml (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * Initial ebuild (see bug #316807) (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * Dropped Lucas from maintainership on his request. Taking it over (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * Dropped Lucas from maintainership on his request (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gamessq] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [licenses] Added missing license of sci-physics/phun
- * [sci-electronics/gsmc] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-python/numexpr]: Moved to gentoo-x86
- * [dev-python/pytables]: Moved to gentoo-x86
- * [dev-python/numexpr]: Cleanup. Thanks to Arfrever
- * [dev-python/pytables]: Cleanup. Thanks to Arfrever
- * [dev-python/pytables]: Tests fail only with hdf5[debug]. Removing patch.
- * sci-mathematics/apron: QA fixes
- * dev-ml/mlgmpid: mpfr-3.0.0 compatibility
- * Remove debug code (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Update python handling (#316937). Cleanup deps. Automatically turn on threads if mpi-threads are requested. (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [app-portage/g-octave] Version bump with cleanup (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * [sci-electronics/magic] Make it use LDFLAGS, improve tutorial file location (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * dev-libs/simclist: simclist-1.4.4_rc3 version bump
- * dev-libs/libanomaly dropped
- * [dev-python/pytables]: Version bump
- * [app-portage/g-octave] Version bump and cleanup. (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * Updated the app-portage/g-octave live ebuild (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * [sci-electronics/magic] Version bump with cleanups, also fixing bug 299476 (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-electronics/magic] Cleanup: removed versions without keywords. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-electronics/magic] Copied from main tree
- * New ebuild for sci-electronics/xnec2c. Based on the work of Dominique Michel <dominique.michel@vtxnet.ch> in bug #138770
- * [sci-visualization/v_sim] New application, see bug 109547. Ebuild submitted by Jérôme Borme.
- * added myself to docs/proj/index.html
- * Fix manifest
- * Adding self to docs/proj/index.xml
- * Adding myself to project page
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Version bump
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [docs/index.xml] Added myself.
- * Added myself to docs/proj/index.xml
- * added app-portage/g-octave-0.2_rc1. URL fixes (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * added app-portage/g-octave (Portage version: 2.2_rc67/git/Linux i686) (Signed Manifest commit)
- * octave-forge-image bump
- * Version Bump, EAPI bump, drop patch included upstream (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * cleanup (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Moving g-cran from sys-apps to app-portage
- * Remove empty lines (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Remove empty lines (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes, implicit declaration fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Borken with current stuff (numpy, etc)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Clean ancient version (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * gone
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Import a version of maxima-5.20.1 that solve bug #255673
- * sci-libs/calculix-cgx: Version bump
- * sci-libs/calculix-ccx: Version bump
- * [sci-chemistry/gromacs]: added missing patch (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * removed gentoo_prefix again
- * renamed patch (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Added prefix to masters
- * Version BUmp (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix for Python ABIs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes and fixes for implicit declarations (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes II (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * No support for current stuf like py >2.5 and numpy
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Removed old (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Respecting LDFLAGS (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Version Bump, Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * InCvs
- * [licenses] Added tmhmm license as referenced in sci-biology/tmhmm
- * [sci-biology/twinscan] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/tmhmm] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/tgi-tools] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/signalp] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/samtools] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [package.mask] Mask sci-biology/newbler for removal (no download source)
- * [sci-biology/mrbayes] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Update manifests
- * Add prefix support and drop old versions
- * Add development ebuild for G-CRAN
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Python ABI fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix PYTHON ABI Stuff (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix PYTHON ABI Stuff (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix PYTHON ABI Stuff (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Another little fix (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix PYTHON ABI Stuff (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fix PYTHON ABI Stuff (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * email changed
- * Fixed octave dep, #285236 (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/xdrfile] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/symmetrica] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/oasa] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/msms] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/med] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Revert "[sci-libs/factory] QA fixes, removed useflag singular which had no effect" because of side effects
- * [sci-libs/gmsh] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/factory] QA fixes, removed useflag singular which had no effect (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/csrosetta-pdbh] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/csrosetta-cs] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/csrosetta-angless] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/cddlib] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/calculix-cgx] QA fixes: ghostscript dependency, built_with_use replaced (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/calculix-ccx] QA fixes: ghostscript dependency (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sys-cluster/ceph] Version bump
- * [sci-chemistry/gromacs] fixed prefix (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * [sci-biology/cluster] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/clover] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [net-misc/bbscp] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [net-ftp/bbftp-server] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [net-ftp/bbftp-client] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-tex/picins] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [licenses] Added AURA license as referenced in dev-python/pywcs
- * [dev-python/omniorbpy] QA fixes: removed ~ia64 keyword, bad dependencies (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-python/ffnet] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-ml/mlgmpidl] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-libs/simclist] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-libs/libunzip] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [package.mask] Mask dev-lang/aldor for removal (no sources available anymore)
- * [dev-cpp/growler-thread] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-cpp/growler-math] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-cpp/growler-link] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-cpp/growler-core] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-cpp/growler-arch] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [app-vim/freefem++-syntax] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [app-text/dgs] Added note: upstream is dead (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [app-text/dgs] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/rosetta] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-cpp/growler] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/frama-c] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-ml/ocamlgraph] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-libs/simclist] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [dev-libs/libanomaly] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-misc/jwnl] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-mathematics/lattE-macchiato] QA fixes (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/gromacs: added stable patch + prefix (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * condor: more config fixes
- * fixed sed line
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * condor: more initd fixes, now local config will reside in /var/lib
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * [dev-perl] Imported packages Lab::VISA, Lab::Instrument, and Lab::Tools (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [perl-core/encoding-warnings] Imported package. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * [sci-libs/ni-visa] Added dummy ebuild...
- * sys-infiniband/librdmacm: adding pc file
- * sys-infiniband/libibverbs: adding pc file
- * Imported changes from tree (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Upstream already included this patch (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed my mail in metadata.xml (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * changed my mail adress
- * Fixed metadata (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * remanifesting
- * condor version bump
- * Trying a fix for paraview-3.8.0 with mpi.
- * Undelete Jmol
- * InCvs
- * Added missing dep on dev-libs/popt (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixing compilation with gcc4, repecting CXXFLAGS/LDFLAGS, reMANIFEST (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Rename 1.4.1 as 1.4.1-r1 so users can easily get stable version from main tree. (Portage version: 2.2_rc67/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * dev-python/pytables: Adding dropped ~x86 keyword
- * dev-python/numexpr: add ~x86 and src_test
- * Bump to EAPI=2, temporarily drop ~ppc, ~x86
- * dev-python/pytables: adding last rc for testing
- * Adding support for multiple python abis
- * Need qt4 ruby bindings which aren't available
- * [dev-tex/revtex] New package (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * Fix for compilation with gcc4.4, #271017 (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * InCvs as sci-libs/punc
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * dev-java/jgrapx is not available
- * InCvs
- * InCvs
- * InCvs
- * removed masks
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * inCvs
- * [sci-misc/gcam] Moved from sunrise to sci overlay. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit)
- * inCvs
- * Version Bump, Prefixify, keyworeded for ~-linux (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * modeller bump
- * [sci-electronics/gspiceui] Imported from sunrise. (Portage version: 2.1.8.3/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-electronics/klayout] Fixed manifest. (See bug 321871...)
- * [sci-electronics/klayout] Trivial version bump. Still needs proper rubyfication.
- * [sci-electronics/klayout] Imported from sunrise.
- * classads bump
- * [sci-geosciences/grass] remove the grass version. better one available in portage now
- * dev-tex/atexmk-416a now in portage
- * Importing new version of paraview in the overlay for testing
- * Fixes for envs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * added missing envs (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixed patch (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * nrpie patch fixed
- * Version Bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/foldingathome] move files (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/foldingathome] Version bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * dev-ml/ocamlgsl now in portage
- * Fixing SRC_URI wrt to bug 322383
- * dev-tex/latexmk: version bump + bash completion (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
- * removed gasgano, cpl, esorex, now in main tree
- * remove old
- * remove old
- * octave-forge-optim bump
- * qcl fixes for gcc and deps
- * coot missing link lib patch
- * sci-mathematics/mdp: fixed manifest
- * sci-mathematics/mdp: Version bump to 2.6
- * Fixed HOMEPAGE (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * mpir revbump and clean.
- * sci-libs/cgnstools: Fixed gcc-4.4 compile problems
- * InCvs
- * coot updated to fit with current head (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * in tree
- * libf2c removed agauibn
- * HEAD fixes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Added pysparse
- * libf2c added temporarly
- * New Addition (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * New package, ebuild written by me
- * [sys-cluster/ceph] Version bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * inherit prefix (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * keyword ~amd64-linux ~x86-linux (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Fixing procheck (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Version bump, now using a patch from the Fedora project to honor FHS.
- * dev-python/astropysics: Adding proper
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * InCvs
- * fixing ChangeLog
- * dev-python/astropysics: initial import wrt bug 317655
- * dev-python/vo: Skipping failing tests, fixing assertions.
- * dev-python/vo: removing docs, updating deps and Python style
- * dev-python/pywcs-1.8.1: updating dependencies and Python style
- * New package, ebuild written by me
- * sci-astronomy/kapteyn: vesion bump
- * renamed patch (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * dev-python/coords: initial import wrt bug #317365
- * dev-python/pywcs-1.8.1: version bump
- * sci-geosciences/pydap*: Updated to latest python ebuild standards.
- * sci-geosciences/cdat-lite: Updated to latest style for Python ebuilds.
- * dev-python/coards: Updated to latest style for Python ebuilds.
- * dev-python/numexpr: Updated to latest style for Python ebuilds.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * version Bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Corrected Manifest file
- * Initial commit for bug 315801
- * sci-mathematics/polymake bump
- * [sys-cluster/ceph] Version bump (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Manifest fixed (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-visualization/ferret-bin: Version bump
- * sci-libs/gmsh-9999: added sci-libs/taucs support
- * Imported from tree (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * sci-misc/salome-*: changed fetch URL + cleaning (thanks Oliver), new patch + modifs to (partially) solve med_int issues on amd64
- * Importet tree changes (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Changed DEPEND of media-libs/SoQt from 1.4.2_alpha4181 to 1.4.2_alpha1841 (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Update and clean cadabra.
- * Added scikits_statsmodels
- * Added scikits_image
- * Added scikits_learn
- * Added test suite
- * Added scikits_optimization
- * Now really installing docs
- * Cleanup, added x86
- * sys-cluster/nullmpi: initial commit (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sys-cluster/scalasca: version bump (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-physics/espresso: fixed a typo (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * Remanifesting
- * sci-physics/espresso: version bump (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * bump
- * new: dev-libs/simclist
- * app-admin/syscall_anomaly dropped
- * [sys-cluster] Add ceph - distributed petascale fs
- * Corrected removing of valpha tarball (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * Corrected behaviour in EAPI>1 (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * removed old prefix support behaviour (Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
- * sci-misc/salome-*: make egencache work again
- * sci-chemistry/votca-csg: added dev use flag (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: added dev use flag (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: update (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: update (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot: Sync with tree and clean up (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * [sci-chemistry/votca-csg] Fix small typo (Portage version: 2.2_rc65/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/votca-csg: gcc-4.4 fix (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: added support for gromacs double-precision (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * New version with additional USE-flag source
- * Fixing final QA issue on sci-mathematics/Macaulay2
- * QA for sci-mathematics/Macaulay2
- * sci-chemistry/votca-csg: version bump (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: version bump (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * New upstream version, cleanup new ebuild
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added examples USE-flag; replaced all installation paths with variable
- * sci-mathematics/topcom overhaul and ~amd64
- * updated 6.3 to eapi=2 and make repoman happy; removed old
- * libfac URI updated
- * sci-misc/salome-* : Version bump (5.1.3) + removed broken 3.2.6
- * Add hydra pm. #309353 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Bump and fix #293665 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * dev-vcs/mercurial-server: fixed bug #286695#c8 (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * Added doc generation to burrtools
- * InCvs
- * nmrview readded (Portage version: 2.2_rc65/git/Linux x86_64) (Signed Manifest commit)
- * Keyworded for ~amd64-linux ~x86-linux (Portage version: 2.2_rc65/git/Linux x86_64) (Signed Manifest commit)
- * Keyworded for ~amd64 ~x86 (Portage version: 2.2_rc65/git/Linux x86_64) (Signed Manifest commit)
- * rm valpha*.tar (Portage version: 2.2_rc65/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * app-admin/eselect-gnuplot: useless, dropped gnuplot mulitslot useflag
- * dev-vcs/mercurial-server: dev-util -> dev-vcs (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * dev-vcs/mercurial-server: dev-util -> dev-vcs
- * dev-util/mercurial-server: clean up (Portage version: 2.1.7.17/git/Linux i686, RepoMan options: --force) (Signed Manifest commit)
- * sci-visualization/gnuplot removed multislot use flag (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot-4.5.9999: checkout right branch (Portage version: 2.1.7.17/git/Linux i686) (Signed Manifest commit)
- * sys-libs/libtermcap-compat not needed anymore (Portage version: 2.2_rc65/git/Linux x86_64) (Signed Manifest commit)
- * Added flexdock
- * sci-mathematics/normaliz QA
- * QA for sci-mathematics/gfan
- * sci-mathematics/frobby QA/ebuild improvements
- * sci-mathematics/4ti2: Ebuild improvements
- * sci-mathematics/Macaulay2 ebuild improvements
- * QA: respecting FLAGS, metadata.xml fixed (Portage version: 2.2_rc63/git/Linux x86_64) (Signed Manifest commit)
- * InCvs
- * Update uri for ffamber (Portage version: 2.2_rc63/git/Linux x86_64) (Signed Manifest commit)
- * InCvs
- * Remanifesting
- * [sci-chemistry/gromacs] Fix typo (Portage version: 2.2_rc63/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Fix typo (Portage version: 2.2_rc63/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Fix typo (Portage version: 2.2_rc63/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Add missing patch (Portage version: 2.2_rc63/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Add ffamber port to gromacs (Portage version: 2.2_rc63/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-mathematics/Macaulay2-1.3.1-r3 since upstream changed source files
- * Cleaning scilab
- * Masked >=jgraphx1.3, unmasked scilab for wider exposure
- * Version bumps for jgraphx
- * More fixes introduced by Guillaume Horel. Disabling blind Debian patches until further recommandation
- * [sci-mathematics/scilab] regenerate manifest (Portage version: 2.2_rc63/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * InCvs
- * inCvs
- * InCvs
- * InCvs
- * InCvs
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * scilab version bump
- * Removed brlcad, now in main tree
- * Removed tnt and jama, now in main tree
- * Moved to tree
- * sci-visualization/gnuplot-4.4.9999 added stable cvs-gnuplot (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * package.mask: added =sci-visualization/gnuplot-4.4.9999
- * sci-visualization/gnuplot-4.5.9999 patch went upstream (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * Fix minorsyn errors
- * Version bump.
- * touch mpir to enable testing on non-x86/amd64 archs. Remove old mpir.
- * InCvs
- * Removed old versions of Macaulay2 and updated deps
- * move mpir in sci-libs and adjust Macaulay2-1.3.* dependencies accordingly.
- * [sci-chemistry/gromacs] patch appliyed upstream (Portage version: 2.2_rc62/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Update dirent.h patch (Portage version: 2.2_rc62/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Dropped unneded patches. They all were applied to git master (Portage version: 2.2_rc62/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-chemistry/gromacs] Add dirent detection patch (Portage version: 2.2_rc62/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-mathmatics/topcom-0.16.2 added Kudos to Johannes Rauh
- * [sci-chemistry/gromacs] threads now on by default and they works fine with mpi (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-visualization/gnuplot-4.5.9999: clean up (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * condor bump
- * InCvs
- * more scilab love
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * more scilab love
- * Bump
- * Bump
- * Bump
- * Added comments in ChangeLog
- * New patches for scilab
- * mpi goodness to hdf-java
- * scripts dir cleaned
- * InCvs
- * sci-chemistry/gromacs-9999: added as-needed fix (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * InCvs
- * sci-chemistry/votca-csg: fixed as-neeeded bug (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: Version bump (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: Version bump (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot: app-default patch went upstream (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * added missing RDEP (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * added RDEP sci-chemistry/mgltools-mglutil (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * InCvs
- * InCvs
- * InCvs
- * sci-chemistry/gromacs-4.0.7-r1: InCvs (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs: docdir patch went upstream (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * [media-gfx/tachyon] Fix sed line sequence (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * revbumped mpir to 1.3.1, changed nocxx to +cxx
- * Added lattE-macchiato Bug 303653
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * InCvs
- * Remove Safe-World from DEPEND per bug 303589
- * Remove Safe-World from DEPEND per bug 303589
- * Version bump
- * Fixed wrong description for cdd+
- * added myself to index.xml
- * Add myself to index.xml
- * added myself in the doc
- * mpi and libc fixes
- * added mpi support for hdf-java
- * Fixed conflict man dir for brlcad
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Remanifest
- * add vina_license
- * [sci-chemistry/autodock_vina] Initial import per bug #282682 (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccpn-2.1.2.1_p100204 -- Added todays python fixes (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot: some fixes went upstream (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * Add upstream fix for wrapper flag ordering
- * InCvs
- * InCvs
- * InCvs
- * InCvs (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * brlcad version bump (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * Version bump (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * removed old versions Upstream proper tarball added (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * Initial commit of fitscut (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * [media-gfx/tachyon] Now tachyon compiles with gentoo cflags (Portage version: 2.2_rc62/git/Linux x86_64) (Unsigned Manifest commit)
- * apbs plugin support now depends on sci-chemistry/pymol-apbs-plugin (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * InCvs (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/gromacs: live ebuild update (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * removed octave fixes, now in main tree
- * some syntax fixes
- * inCvs
- * inCvs
- * sci-geosciences/seawater: Removed the earlier setting for S which with the new upstream numbering isn'g needed.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-geosciences/seawater: Upstream change numbering conventions.
- * sci-chemistry/oasis -- RDEPEND changed sci-chemistry/ccp4 -> sci-chemistry/ccp4-apps, thanks alexxy for reporting (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- Fix for 301762, thanks Johan Hattne for the patch (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/oasis -- remove forced RDEPEND on arp-warp (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * littel update to tachyon ebuild (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * [media-gfx/tachyon] Initial import. thanks to Christopher Schwan (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * sci-visualization/ferret-bin: Removed old ebuilds. Reformatted to removed duplicate blank lines.
- * sci-mathematics/pest: Removed unnecesary line.
- * sci-mathematics/mdp: Removed unnecessary blank lines and fixed copyright years.
- * sci-libs/scikits_timeseries: Removed unnecessary blank line at end of ebuild.
- * dev-python/numexpr: Removed ending blank line.
- * dev-python/coards: Removed useless blank lines.
- * sys-cluster/pyslice: Removed unnecessary ending blank line. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sys-cluster/blcr: Repoman sweep (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/tcd-utils: Removed useless blank lines (leaving the useful lines alone) and fixed copyright years. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/tcd-editor: Removed useless blank lines. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/tappy: Useless blank line at end and fixed copyright years. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/seawater: Useless ending line. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/swmm: Useless blank lines and copyright fix (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/congen: Useless blank line. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/cdat-lite: Blank line fixes from repoman. (Portage version: 2.1.7.16/git/Linux x86_64) (Unsigned Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-geosciences/pydap*: Minor repoman fixes (removed ending blank lines)
- * sci-chemistry/imosflm -- Version Bump (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/coot -- Version Bump (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- Bad upstream, changed tarball w/o bumping (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- Bad upstream, changed tarball w/o bumping (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- Bad upstream, changed tarball w/o bumping (Portage version: 2.2_rc62/git/Linux i686) (Signed Manifest commit)
- * sci-geosciences/pydap*: Corrected the license.
- * sci-libs/votca-tools: version bump (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: version bump (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: completion file was moved (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-libs/monomer-db -- version bump (Portage version: 2.2_rc62/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/superlu -- fixed bug #302763 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * bumped mpir to 1.3.0, remove old rc, adjust copyright in 1.2.2
- * sci-chemistry/pymol-apbs-plugin -- fixes for some file locations (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/ccpn-2.1.2.1_p100129 -- Added todays python fixes (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/pymol-apbs-plugin -- Initial addition by me (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/pymol-apbs-plugin masked
- * sci-visualization/gnuplot: Added ~amd64 keyword (bug #232363) (Portage version: 2.1.7.16/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/refmac -- Version bump (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/refmac -- Version bump (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/refmac -- Version bump (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-geosciences/pydap*: Corrected license.
- * sci-geosciences/seawater: Corrected license. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * dev-python/numexpr: Initial ebuild. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/seawater: Initial ebuild (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-geosciences/grass-6.4.0_rc5] sync with portage version and add a missing patch
- * sci-visualization/ferret-bin: Changed ebuild to correctly install according to x86 and amd64 architectures. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-visualization/ferret-bin: Version bump. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * Added ffnet
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * fixed superlu for newer tar ball
- * sci-misc/simpy: Deleted old ebuild. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sys-cluster/pyslice: Removed old ebuild. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sys-cluster/blcr: Removed old ebuild and updated copyright years on 0.8.2. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-mathematics/pest: Version bump, plus new download file naming convention. Removed old non-working ebuilds. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/xtide: Included 'non-commercial' use flag in metadata.xml. Fixed dependencies. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/libtcd: Included use flag 'non-commercial' in metadata.xml. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/tcd-editor: Updated copyright years. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/tappy: Updated manifest and removed old ebuild. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * Fixed copyright year. (Portage version: 2.1.6.13/git/Linux x86_64) (Unsigned Manifest commit)
- * [sci-geosciences/qgis-9999] add gps useflag again and make QWT optional
- * Removed qgis-1.4 now in main tree
- * sci-geosciences/pydap_handlers_cdms: Initial ebuild.
- * sci-geosciences/cdat-lite: Initial ebuild.
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-chemistry/votca-csg: dep fix (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs: Fixes bug #302048 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccpn -- updated patches and corrected versioning (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-geosciences/pydap_responses_kml: Initial ebuild.
- * sci-geosciences/pydap_handlers_nca: Corrected RDEPEND.
- * sci-geosciences/pydap_handlers_netcdf: Forgot the ChangeLog
- * sci-geosciences/pydap_handlers_nca: Initial ebuild.
- * sci-geosciences/pydap_handlers_netcdf: Initial ebuild.
- * sci-geosciences/pydap_responses_netcdf: Updated Manifest
- * sci-geosciences/pydap_responses_netcdf: Initial ebuild.
- * sci-geosciences/pydap: Initial ebuild.
- * dev-python/coards: Initial ebuild. Converts from COARDS time (days since X) into python datetime.
- * sci-visualization/gnuplot: some fixes went upstream (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: live ebuild added (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: live ebuild added (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * added masks for votca live ebuilds
- * sci-chemistry/votca-csg: added ~amd64 keyword (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: added ~amd64 keyword (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs: fixed --as-needed confusion (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-biology/samtools: Fixed manifest (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * Version bump
- * Added open-axiom
- * Fixed octave dep to libX11
- * Masked scilab
- * Import of newer scilab
- * Initial import of jlatexmath
- * Import of jgraphx
- * Import of jeuclid-core
- * Initial import of hdf-java
- * move EGIT stuff up before inherit
- * sci-chemistry/scala -- Version bump (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/pointless -- Version bump -- thanks Johan Hattne for reporting (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci/sci-chemistry/gromacs: sync with tree and removed old versions (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * cleanup (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Stable x86 and amd64 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Version bump with fixes to env.d files. (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Cleanup (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Remove older hdf5
- * revbump to avoid conflicts with portage tree. (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/cyana added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/scikits_timeseries: fixed Manifest (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/scikits_timeseries: Version bump, fixed licenses, and added pytables to RDEPEND.
- * New Package sci-libs/cdd+
- * Move include files into a subdirectory
- * Remove paraview as it has been revbumped in the main tree by Markus Dittrich
- * Only mask the paraview version in the science overlay
- * sci-visualization/gnuplot: multislot fixes (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccpn -- todays patches added (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/refmac -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/monomer-db -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * dev-util/smartgit -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/clipper -- Version Bump, nuking the as-needed patch (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ksdssp added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb missed header wrong place (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb++ missed header wrong place (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb missed header installation (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb++ missed header installation (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libpdb++ added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/dssp2pdb added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * dev-util/mercurial-server: Added ~am64 keyword (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * Bump sys-cluster/openmpi-1.4.1
- * [sci-geosciences/qgis] version 1.4.0 released. remove live ebuild for this version
- * [sci-chemistry/pyquante] Initial version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Initial import of burrtools
- * Bump. Now based on Debian modifications
- * There is now blast-db anymore, use ncbi-tools++ instead
- * sci-biology/psipred -- Fixed dep another time (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-biology/blast-db -- missing perl DEPS added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- RDEPEND on sci-biology/psipred (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-biology/psipred -- exprefixed (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-biology/psipred -- adopted to new blast-db (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/nmrpipe -- EPREFIXed (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-biology/blast-db -- We do not install the complete db anymore (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/nmrpipe -- EPREFIXed (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/nmrpipe -- missing patch moved (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/nmrpipe -- Version Bump 5.0.2010.008.16.00 (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/scala -- Version Bump 3.3.16 (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- EPREFIXed (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- final fixes part 2 (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- final fixes (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- more fixes part 2 (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- more fixes (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- fixed ebuild (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mars -- New Ebuild Added (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps-6.1.2* is blocking sci-chemistry/sfcheck (Portage version: 2.2_rc61/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot added multislot support (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * app-admin/eselect-gnuplot: needed for gnuplot[multislot] (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * New package sci-misc/flashdot Bug 300384
- * Adding ocamlgsl(Bug 280939) from sunrise to science.
- * [sci-geosciences/qgis] added new 1.4 live version until the release happens, fixed deps of qgis-9999 (gps no longer optional)
- * added patch to fix missing definitions
- * added patch to fix missing definitions
- * Add mpi.eclass enabled sci-libs/hdf5
- * new ebuild: app-admin/syscall_anomaly and dev-libs/libanomaly
- * sci-visualization/qtiplot is bumped in the tree
- * cforms is in tree now
- * sci-chemistry/refmac -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * dev-util/mercurial-server: version bump (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * x11-libs/xforms -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/rasmol PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/neartree -- PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/cbflib -- PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/cbflib -- PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-libs/cbflib -- PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/cbflib prefix ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/talos+ -- depending on rasmol (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/talos+ PREFIX ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/mddnmr Initial commit (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/arp-warp-bin -- needs specific revision of ccp4 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * update license
- * mddnmr license added
- * sci-chemistry/ccpn -- fixed some python stuff (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/pymol-1.2.2 is in the tree (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sparky -- Fixed usage of python.eclass (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * app-arch/lbzip2 -- added symlink USE, to link lbzip to /usr/bin/bzip2 (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/pointless -- Version Bump PREFIX whitelist ready (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sparky -- Version bump 3.115 complete rewrite: multilib aware, not using crappy buildsystem for installation, fixing locations, as-needed respecting, no fixed python version (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sparky imported from tree
- * sci-chemistry/pymol -- QA work (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * dev-tex/qtexengine x11-libs/gl2ps are in the tree now
- * sci-chemistry/pynmr -- imported to save (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * app-arch/lbzip2-0.20 -- Version bump and cleanup of old versions (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/xds-bin -- version bump (Portage version: 2.2_rc61/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sfcheck -- nano sfcheck-7.03.16.ebuild <ccp4-apps-6.1.3 (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sfcheck -- blocking <ccp4-apps-6.1.3 (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- don't build sfchack, but depend on it (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/sfcheck -- Initial commit (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/balbes-db -- Version bump (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- Version bump (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4i -- Version bump (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/ccp4-libs -- Version bump (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4 -- Version bump (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccpn -- inclusion of todays patchset (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccpn -- fixes for doc installation (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/poitnless -- version bug (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/xia2 -- version bug, fixes bug 297238 (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * media-libs/soqt removed
- * dev-util/smartgit -- version bump to 1.0.1 (Portage version: 2.2_rc60/git/Linux x86_64) (Signed Manifest commit)
- * Update dev-libs/mpir-1.2 branch. Using portage yasm now.
- * sci-mathematics/frobby QA: Respect users -O setting and no pre-stripping
- * media-libs/SoQt -- little QA (Portage version: 2.2_rc59/git/Linux x86_64) (Signed Manifest commit)
- * media-libs/SoQt -- is maintainer-needed (Portage version: 2.2_rc59/git/Linux x86_64) (Signed Manifest commit)
- * media-libs/SoQt -- renamed correctly soqt -> SoQt (Portage version: 2.2_rc59/git/Linux x86_64) (Signed Manifest commit)
- * we don't need .svn
- * sci-chemistry/votca-csg: Version bump (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: Version bump (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/polymake revbump
- * Repairing some depencies of freecad
- * Initial import of Pivy
- * Soqt back in science , because it's still not in main tree
- * paraview ebuild improvements.
- * [sci-geosciences/qgis-9999] adapt ebuild to portage changes plus some extras
- * sci-chemistry/coot -- clean up (Portage version: 2.2_rc58/git/Linux x86_64) (Signed Manifest commit)
- * sci-mathematics/octave-forge-meta -- dep of sci-mathematics/octave-forge-quaternion added, thanks by Emil Karlsson (Portage version: 2.2_rc58/git/Linux x86_64) (Signed Manifest commit)
- * sci-mathematics/octave-forge-quaternion -- Initial commit, written by Emil Karlsson (Portage version: 2.2_rc58/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/votca-csg: added googlecode mirror (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools: added googlecode mirror (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * >=sci-visualization/paraview-3.6.1-r2: HARDMASKED as this is an experimental ebuild
- * Import "improved" paraview ebuild
- * [sci-geosciences/swmm] Update manifest and remove stale ebuild
- * Version bump. Removed documentation since upstream changes without changing name so manifest could not be kept up to date.
- * dev-util/mercurial-server: version bump to 1.0 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg: corrected description (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/gnuplot: added version 4.4.0_rc1 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/votca-csg initial add - bug #296707 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/votca-tools initial add - bug #296707 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * Deleted because it's in the main tree
- * sci-chemistry/coot -- some fixes towards the gtk-2 migration from upstream (Portage version: 2.2_rc58/git/Linux x86_64) (Signed Manifest commit)
- * Deleted coin because it's has reached main tree
- * Version bump to version 4.1.2 revision 4181
- * sci-libs/framewave: Add ~amd64 keyword and fix deps
- * sci-mathematics/frama-c/files/frama-c-20090901-always_init.patch
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/frama-c/files/frama-c-20090901-always_init.patch
- * Added patch to fix incorrectly declared variable (#293905).
- * dev-scheme/guile-gnome-platform: Deleted since it's already in main tree
- * Changed error in MY_P
- * In main tree
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * dev-util/smartgit -- SRC_URI fixed (Portage version: 2.2_rc56/git/Linux i686) (Signed Manifest commit)
- * dev-util/smartgit -- version bump the release 1 (Portage version: 2.2_rc56/git/Linux i686) (Signed Manifest commit)
- * Added ~x86. Thanks to Derk W. te Bokkel
- * Fully commit the openmpi-1.4 bump.
- * Bump openmpi-1.4.
- * sci-chemistry/openbabel-python: Block openbabel[python], #288199
- * [sci-libs/coin] Fix b0rked manifest (Portage version: 2.2_rc55/git/Linux x86_64) (Signed Manifest commit)
- * Version bump of Coin to 3.1.2
- * sci-chemistry/burrow-owl fixed starparse dpe to >=1.0 (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * workaround for parallel installation added, fixes bug 288235 (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/nmrpipe fixed missing lip.patch (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * dev-scheme/guile-gnome-platform correctly assigned contributer -- thanks Rafael G. Martins (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * dev-scheme/guile-gnome-platform added to fix bug 293655 (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/starparse unkeyworded te live ebuild again (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/starparse release 1.0 added (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/mrbump don't use /usr/lib64/ccp4/ccp4i (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * nmrpipe version bump (Portage version: 2.2_rc56/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * To main tree
- * deleted freecad in wrong directory
- * Change user from root to Roelof Wobben
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Change user from root to Roelof Wobben
- * Add sci-libs/framewave-1.3.1
- * x11-libs/guile-gtk: Removed because it was commited to main tree
- * Initial import of freecad
- * add mpi_pkg_set_ld_library_path()
- * Fix eselect-mpi config file.
- * Fix eselect-mpi config file.
- * Add MPI_PKG_USE_ROMIO to mpi.eclass.
- * Note revisions of patches in upstream repo.
- * sci-chemistry/coot -- version bump to 0.6 and cleanup of old versions (Portage version: 2.2_rc55/git/Linux i686) (Signed Manifest commit)
- * app-arch/lbzip2 -- version bump to 0.1.9 (Portage version: 2.2_rc55/git/Linux i686) (Signed Manifest commit)
- * pdb-extract-3.004 has been merged into portage tree.
- * sci-chemistry/mage Everything fixed (Portage version: 2.2_rc54/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/mage Imported fron dberkholz overlay (Portage version: 2.2_rc54/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/probe Everything fixed (Portage version: 2.2_rc54/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/probe Imported fron dberkholz overlay (Portage version: 2.2_rc54/git/Linux i686) (Signed Manifest commit)
- * sci-libs/neartree -- version bump to 2.1.4 (Portage version: 2.2_rc54/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs docdir->htmldir (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs: htmldoc was installed in the wrong path (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-libs/factory Manifest
- * sci-visualization/gnuplot: fixed bug #294467 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/frama-c20090901: always_init.patch -> fix ptr init
- * Repomans QA issues in sci-libs
- * Added use flag descriptions for 'singular' used in sci-libs/factory and sci-libs/libfac
- * sci-mathematics/Macaulay2 updated dependencies
- * Repomans QA fixes in my sci-mathematics packages
- * drop dapl support, seems not needed if you use infiniband
- * Re-manifest
- * Added patches to octave
- * sci-mathematics/octave-forge-meta -- sci-mathematics/octave-forge-video added as dep (Portage version: 2.2_rc52/git/Linux x86_64) (Signed Manifest commit)
- * sci-mathematics/octave-forge-video -- Written by Emil Karlson (Portage version: 2.2_rc51/git/Linux i686) (Signed Manifest commit)
- * add infiniband and dapl support via extrenal libs to openmpi
- * sci-chemistry/ccp4-apps -- nesseccary fix to work together with Arp/Warp (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * sci-mathematics/frama-c-20090901: always_init.patch
- * Added to tree
- * sci-chemistry/drawxtl -- SRC_URI fix, thanks to Hannes Krueger (Portage version: 2.2_rc51/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4i -- Manifest fixed (Portage version: 2.2_rc51/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/arp-warp-bin -- Fixed instruction when python is bumped (Portage version: 2.2_rc51/git/Linux i686) (Signed Manifest commit)
- * Macaulay2-1.3.1-r2 completely split ebuild
- * Frobby, now installing missing header
- * New package sci-mathematics/frobby Final dep for Split Macaulay :) Bug #294503
- * Update homepage at request of upstream. (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- masked bad version (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/pointless-1.4.5 -- version bump (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- missing $ and pisa/sbase installation fix (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4i -- typo corrected
- * sci-libs/balbes-db -- set env BALBES_ROOT (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * ccp4-apps start to fix usage of ccp4.setup.*
- * New package: sci-libs/factory Dependency of sci-libs/libfac
- * New package sci-libs/libfac A dependency of sci-mathematics/Macaulay2 and sci-mathematics/Singular
- * Remove older versions of sys-cluster/mpich2 (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * bump sys-cluster/mpich2-1.2.1 (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * qgis-9999: add sqlite use dep to python. needed for the OSG plugin to work.
- * sci-mathematics/frama-c-20090901: always_define.patch
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Added an experimental octave
- * sci-mathematics/frama-c-20090901: init_locals_defined.patch
- * New package, ebuild written by me
- * sci-chemistry/ccpn -- Bad mistake in setting compile options --> leads to opengl crashes (Portage version: 2.2_rc51/git/Linux i686) (Signed Manifest commit)
- * Needs octave > 3.2, bug #293814
- * Normaliz Manifest. Upstream did change that file!!!
- * Filesize for mpir-1.2.2 Did upstream change that .tar.gz??
- * Importing iml-1.0.3
- * Fix openib.init.d and env.d (Portage version: 2.2_rc51/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * sci-chemistry/gromacs build mpi and non-mpi libs in 4.0.5-r1 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-visualization/qtiplot -- Fixed sip patch to work with <sip-4.9 (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * Fix openib.conf for modprobe (Portage version: 2.2_rc51/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Import polybori
- * Add a patch and a use flag to dev-libs/mpir
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * qgis-9999: fix the subdir paths so that extensions work again. Still getting QA reports from portage. maybe someone else can look at that?
- * Fix manifest (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * missing dep (Portage version: 2.2_rc50/git/Linux i686) (Unsigned Manifest commit)
- * [sci-geosciences/qgis-9999]: remove unneeded patch
- * qwt removed again
- * sci-visualization/qtiplot version bump to 0.9.7.10 (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * x11-libs/gl2ps -- Version bump & ported to cmake buildsystem (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * x11-libs/gl2ps imported from tree
- * media-libs/emfengine missing dep added (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * media-libs/emfengine added (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * dev-tex/qtexengine -- add missing deps and compile dynamic lib (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * dev-tex/qtexengine -- use it right (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * dev-tex/qtexengine -- use of PATCHES from qt4.eclass (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * x11-libs/qwt -- version bump to latest commit in svn, needed for qtiplot (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * dev-tex/qtexengine added (Portage version: 2.2_rc51/git/Linux x86_64) (Signed Manifest commit)
- * qtiplot imported
- * refetching qgis samples
- * qgis now in main tree, adapted svn qgis
- * mpir 1.2 branch updated. Sage people will care for 1.3
- * Updated deps of Macaualay
- * Revert "sci-geosciences/swmm: Version bump and upstream now includes version in"
- * sci-geosciences/swmm: Version bump and upstream now includes version in download file.
- * Manifest fix for mpir
- * sci-mathematics/4ti2 good to go on amd64
- * sci-mathematics/Macaulay2-1.3.1-r1 with doc fixes. Removed old versions
- * gredata Manifest fix
- * sci-chemistry/solve-resolve-bin -- Manifest fix (Portage version: 2.2_rc50/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccp4 -- oasis4 USE removed again (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/oasis4 -- oasis4 USE removed again (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps -- oasis4 USE removed again (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4i -- oasis4 use removed again (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * BUGS is not in distribution
- * add emake install and dodoc to src_install
- * Initial ebuild of HFST package
- * Manifest for gfan
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Initial condor ebuild
- * sci-chemistry/oasis -- Initial commit Written by me fixes bug 290588 (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4i commiting all fixes for oasis support (Portage version: 2.2_rc50/git/Linux x86_64) (Signed Manifest commit)
- * last fix for oasis support in ccp4-apps (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * mv SCIAPPS in ccp4-apps to PEDEPEND (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * fixed oasis USE dep to ccp4-apps (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/solve-resolve-bin added to overlay (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * add solve license
- * oasis license added
- * sci-mathematics/Macaulay2-1.3.1 revbump
- * New Package: dev-libs/mpir (integer arithmetics, drop-in replacement for gmp) Bug #293383
- * New package sci-mathematics/gfan (Computations in tropical and toric algebra) Bug #293381
- * sci-chemistry/xia2 -- added missing fixes for bytecompiling (Portage version: 2.2_rc50/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/xia2 -- SRC_URI fix (Portage version: 2.2_rc50/git/Linux i686) (Signed Manifest commit)
- * dev-python/omniorbpy: copied last version from portage
- * dev-util/mercurial-server version bump to 0.9 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/coot -- greg-data digest fixed (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/refmac -- Upstream did a change to the tarball (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/xia2 -- version bump (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * app-text/txt2tags-2.5 added to fix bug #278317 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs fix for bug #284431 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccpn -- fixes for internal help and opengl usage (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/coot -- dev-scheme/goosh dep removed (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * dev-util/smartgit version bump (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccpn version bump (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * fixed inherit, stupid me (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/smmp ifrst checkin (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * removed ntl, in main tree
- * fixes patching for sci-chemistry/ccpn (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/nmrpipe -- corrected patch name (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccpn -- version bump (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * version bump (Portage version: 2.2_rc49/git/Linux i686) (Signed Manifest commit)
- * fasta version bump and fix of chatastrophic ebuild, src_test is still broken (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * [sys-block/tgt] Version bump (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * Added acknowledgement (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/clapack -- fixed SRC_URI to upstreams (Portage version: 2.2_rc49/git/Linux x86_64) (Signed Manifest commit)
- * givaro bump
- * sci-libs/cctbx version bump fixes boost <-> python-2.6.4 issues (Portage version: 2.2_rc48/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/coot bumped to bills latest stable release (Portage version: 2.2_rc48/git/Linux x86_64) (Unsigned Manifest commit)
- * greg-data Manifest fix (Portage version: 2.2_rc48/git/Linux x86_64) (Signed Manifest commit)
- * Fixed sprintf bug (fixes #290373).
- * Merged Justin's fix into portage.
- * Moved to tree
- * Add ICM License
- * icm-browser version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Unsigned Manifest commit)
- * icm version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/coot bumped to latested release from fink (Portage version: 2.2_rc48/git/Linux x86_64) (Signed Manifest commit)
- * m4ri version bump
- * give some gcc-4.4 love to modglue
- * more parallel make fixes for lie
- * cadabra version bump
- * sci-chemistry/ccp4i fix for f2mtz bug 289379
- * sci-visualization/gnuplot: version bump to 4.5.9999 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * update package.mask for gnuplot-4.5.9999
- * sci-libs/opencascade fix for java include, reported via IRC by roelof
- * fix bug 291597
- * small fix (Portage version: 2.2_rc48/git/Linux i686) (Signed Manifest commit)
- * sci-libs/libcmatrix version bump to 3.2.1 (Portage version: 2.2_rc48/git/Linux i686) (Signed Manifest commit)
- * Add GamessQ (Portage version: 2.2_rc48/git/Linux x86_64) (Signed Manifest commit)
- * [sci-chemistry/wxmacmolplt] Moved to tree
- * ccp4-libs -- fixed the 64bit fix (Portage version: 2.2_rc48/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4-apps: PYTONPATH patch added -- thanks Donnie for pointing this out (Portage version: 2.2_rc47/git/Linux i686) (Signed Manifest commit)
- * sci-libs/cgnstools: Fixed problems with 2D meshes and cgns_to_vtk.
- * dev-python/pythoncgns: Initial release for bug 291221
- * apbs version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sys-cluster/scalasca missing dep bug #290560 (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * 64bit fix (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * app-arch/lbzip2 version bump (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * apbs version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * fix for bug 289032 (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * fix for bug 290754 (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * import from stride
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * In main tree
- * renamed patch which was missing
- * nedit is fixed in tree
- * smartgit version bump
- * app-arch/lbzip2 version bump to 0.16 (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/ccpn python update (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/talos+ version bump fixes bug 289651
- * sci-chemistry/nmrpipe version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * talos missing RDEPEND added
- * nmrpiep fixes (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/nmrpipe various fixes (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/tinker version bump fixes bug 290459 Thanks Ivan Fedyanin for providing a updated ebuild (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * app-editors/nedit missing die (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * dev-ml/mlgmpidl-1.1: fix depend variable
- * wrong CAT name
- * update gre-test digest (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * app-editors/nedit fix for bug 290337 (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * nedit import from portage
- * New package, bug 155780. Ebuild written by me and dawe <daweonline@gmail.com>
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * more eapi2 updates
- * various eapi2 updates
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/sage-bin: I stopped trying to make sage-bin work some time ago. Upstream made it very difficult. Ebuild not updated since then and now trying to work out an ebuild to compile sage rather than install the binaries.
- * New package, bug 155780. Ebuild written by me and dawe <daweonline@gmail.com>
- * version bump fix for upstream typo
- * sci-electronics/linsmith version bump patch created by TomJBE (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * Added gcb
- * Added classads
- * sci-chemistry/polygon initial commit written by me (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * needed die added
- * sci-libs/gmsh-9999: moved sources to svn repesitory
- * app-arch/lbzip2 version bump to 0.16_rc1 Maintainer wrote me a mail. (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/refmac version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * [sci-biology/sequin] Please dont brake metadata. Run repoman full before you commit something. Or use repoman commit it works with git too (Portage version: 2.2_rc46/git/Linux x86_64) (Unsigned Manifest commit)
- * Add desktop shortcut
- * Fix manifest
- * New package, ebuild written by me
- * sci-chemistry/molrep tests enhanced (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * version bump of pointless (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * molrep version bump (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * refmac version bump to 5.5.108 (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/med-2.3.5 needs >=sci-libs/hdf5-2.6.4
- * removed numeric dep (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * sci-mathematics/apron/apron: fix ppl install on x86
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/gappa(lib-coq): bump version to 0.12(.1)
- * sci-libs/gmsh-9999: removed keywords
- * Manifest fix again (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * Cleaning and much QA, tested on amd64
- * Manifest (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * tried to fix coot test
- * qa
- * sci-mathematics/why: fix search with pvs binary
- * dropping sci-mathematics/pvs: unmaintained mainstream and PITA to maintain in portage
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/pvs: fix sbcl-patch on i*86
- * sci-libs/gmsh: small corrections + version bump + nightly version
- * sci-libs/cgnslib: fixed DEPEND and RDEPEND confusion
- * sci-libs/med: Version bump + corrections, doc and examples USE flags added
- * [sys-infiniband/ibutils] Fix bug 289037. thanks to Kacper Kowalik (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * Version bump to blcr-0.8.2. Minor edits to remove unused vmadump module and unneeded sandbox warning.
- * refmac version bump to 5.5.0107
- * fix Manifest and remove old versions (Portage version: 2.2_rc46/git/Linux i686) (Signed Manifest commit)
- * manifest fix
- * [sci-chemistry/ccpn] Fix manifest (Portage version: 2.2_rc46/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * new version needs testing
- * ccpn update
- * cctbx version bump
- * refmac bump to 5.5.106
- * coot libcurl dep added
- * ccpn version bump to 2.1.1
- * sci-mathematics/frama-c: varinfo_export patch dev-ml/ocamlgraph: eapi2 fix
- * octave-epstk-2.1.ebuild -- fix for bug 288586 Some QA, rest is commented in the ebuild
- * Bump ICC 10 series per bug 284801
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Version bump, rewrite and rename to gbrowse
- * ccpn update
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * New package, ebuild written by me
- * Import of lwpr
- * ccpn now includes updates from upstream which are not provided in the releases
- * pointless tarball mirrored
- * [eclass] Update openib eclass per bgreen mail
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * opendx changes now in main tree
- * Bump sys-cluster/mpich2-1.2
- * Added working docs from old gentooscience repo
- * aplpy version bump
- * vo version bump
- * atpy bump
- * sci-chemistry/mgltools-autodocktools Needs python[tk]
- * sci-chemistry/autodock Qa and respect flags
- * sci-chemistry/mgltools-autodocktools -- Added sci-chemistry/mgltools-support to RDEPEND
- * removed icc idb ifc ipp now in main tree
- * Some QA on coot
- * fixed ChangeLog and Manifest
- * coot fixes as-needed patch not needed anymore Same for reduce sed rappermc patch added
- * molrep version bump to 10.2.34
- * refmac version bump to 5.5.105
- * [sci-biology/foldingathome] Version bump (Portage version: 2.2_rc43/git/Linux x86_64) (Signed Manifest commit)
- * Merge remote branch 'origin/master'
- * Fixed bug in octave-forge eclass.
- * Bumped remaining octave-forge ebuilds.
- * [sci-biology/fasta] Fix manifest (Portage version: 2.2_rc42/git/Linux x86_64) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-visualization/ferret-bin: Version bump to 6.3.
- * In main tree
- * Bumped additional octave-forge ebuilds.
- * Manifest
- * Fixing shaders patch
- * Fixing pymol shaders patch.
- * Bumped some of the octave-forge packages.
- * In main tree
- * pymol bump to 1.2.2
- * sci-mathematics/netgen: fixed Manifest hopefully
- * sci-mathematics/netgen: fixed Manifest and Changelog
- * sci-mathematics/netgen: fixed libTogl location as it changed; removed old 4.4er patches
- * sci-mathematics/netgen: Changed opencascade path to /opt/opencascade-6.3/ros 4.9.11; removed old 4.4er versions
- * dev-tcltk/togl: Fixed install paths for togl-1.7; removed 2.0 as this is now in portage
- * MANIFEST
- * ccp4i should have been bumped before
- * Merge git+ssh://kancheli/data/local/science into refmac
- * refmac bump and cleanup
- * version bump
- * Add dep on sys-cluster/empi to mpi.eclass for classed packages.
- * [dev-util/mercurial-server] Homepage updated (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * Remove incorrect blocker.
- * clustalw-1.83-r3 is in the tree
- * [dev-util/mercurial-server] Initial commit (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * In main tree
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * New package, ebuild written by me
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * sci-mathematics/frama-c: varinfo patch only to fix export
- * [sys-block/tgt] Add missing rdepend (Portage version: 2.2_rc41/git/Linux x86_64) (Unsigned Manifest commit)
- * net-fs/glusterfs moved to tree as sys-cluster/glusterfs
- * Another bunch of updates related to Frama-C
- * Various updates related to Frama-C.
- * removed h5py now in main tree
- * removed h5py now in main tree
- * coot -- upstream fixes COOT_TEST_DATA_DIR and included our patch for tests
- * smartgit version bump
- * dev-python/h5py: Version bump to 1.2.1.
- * app-text/dgs: fix + modifs thanks to Olivier Huber
- * New package: sci-mathematics/topcom-0.16.0 Bug #285619
- * manifest
- * manifest
- * Manifest fix
- * ccpn update
- * smartgit versio bump
- * smart-git version bump
- * ccpn versionbump
- * test
- * ccpn minor fixes
- * sci-chemistry/pymol-plugins-bni-tools added
- * ccpn version bump and rewrittings
- * sci-libs/gmsh: Reworked ebuild from Etienne Lorriaux
- * sci-mathematics/netgen: Version bump
- * tablelist: bump to 4.12.
- * Bump mpich2-1.1.1_p1
- * fixed env files for ifc and icc
- * Replaced the broken opencascade-6.3 by opencascade-6.3-r1
- * First import in science overlay as an opencascade dependency
- * Cleaning Committer: Etienne Lorriaux <etienne.lorriaux@gmail.com> Changes to be committed: deleted: Changelog modified: Manifest modified: med-2.3.1.ebuild modified: med-2.3.4.ebuild
- * Added correct manifest Changes to be committed: modified: Manifest Changed but not updated: deleted: Changelog
- * Version bump + trivial changes for QA check Committer: Etienne Lorriaux <etienne.lorriaux@gmail.com> Changes to be committed: new file: ChangeLog new file: files/med-2.3.4-gcc-4.3.patch new file: med-2.3.4.ebuild new file: metadata.xml Changed but not updated: deleted: Changelog modified: Manifest modified: med-2.3.1.ebuild modified: med-2.3.4.ebuild
- * New package, thanks to Philippe Veber for the ebuild
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * New package, thanks to Philippe Veber for the ebuild
- * HOMEPAGE corrected bug 285068 bumped prerelease to r2312 which will be the version of the second prerelease Included src_test in prerelease
- * fix for bug 285068
- * Gentoo is UNIX isn't it?
- * sci-visualization/ferret-bin-6.2: Version bump plus much simpler because upstream generously changed download names. Fixed some environment variables that didn't work in files/99ferret.
- * coot working test revision to log added
- * test-data was updated
- * coot src_test cleanup
- * src_test is working on coot
- * prelimary src_test fix
- * New package, ebuild written by me
- * sci-mathematics/freefem++: version bump and cleanup.
- * coot -- typo fixed
- * coot -- use test condition missing for unpack
- * coot -- src_test is working
- * greg-1.5 added
- * [dev-lang/ifc] Fix manifest; Please\! Dont commit ebuild with broken manifests\! (Portage version: 2.2_rc40/git/Linux x86_64) (Signed Manifest commit)
- * fix license
- * fix license
- * fix license
- * missing quotations
- * pointless -- version bump
- * dev-scheme/greg added
- * dev-util/smartgit version bump
- * removed the env-update from pkg_postinstall
- * Various updates related to sci-mathematics/frama-c
- * New package, ebuild written by me
- * Version bump
- * Fixed closing quotations
- * Modified env files for icc and ifc
- * [dev-lang/ifc] Fix manifest (Portage version: 2.2_rc40/git/Linux x86_64) (Signed Manifest commit)
- * Fixed collision files among Intel packages
- * fixed tagged source script
- * Added numscons
- * New ebuild for icc gathering all components
- * New package: sci-mathematics/normaliz Bug #283676
- * [sci-geosciencies/josm] New version
- * sci-mathematics/netgen: Changed to slotted togl-1.7, minor changes for opencascade
- * dev-tcltk/togl: Slotted ebuild for version 1.7
- * readded togl
- * coot Upstream fixed the check maketarget
- * togl is fixed in the tree
- * [sci-geosciences/qgis] Version bump. Ebuild fixed. Dropped postgis from dependencies. Delete gdal from overlay
- * sci-mathematics/netgen: fixed netgen.desktop
- * sci-mathematics/netgen: Version bump, make repoman happy; Thanks to Christoph Lehrenfeld, Adam Zdunek and Daniel Tourde
- * dev-tcltk/togl: Reintroduced togl-1.7 as dependency for >netgen-4.9*
- * sci-libs/cgnslib: Reintroduced cgnslib-2.5.3, as it needs <sci-libs/hdf5-1.8
- * sci-libs/cgnslib: Needs now >=sci-libs/hdf5-1.8
- * sci-libs/cgnstools: Corrected checksums, as upstream changed tarball.
- * sci-libs/cgnslib: Corrected checksums, as upstream changed tarball.
- * coot -- src_test developed
- * version bump
- * smartgit version bump
- * ccp4i added crank_shelxd.tcl.patch QA removed WINDOWS and UNIX binary dirs cleaned up old versions
- * talos+ version bump
- * prelimary src_test support for coot
- * sci-libs/driftwood written by me
- * probcons ldflags and collision fix
- * sci-chemistry/mosflm parallel cbf make patch
- * QA on lbzip
- * QA on my sci-libs packages
- * superlu version bump
- * fetch url fixed
- * smartgit added
- * lincense smartgit added
- * sci-libs/calculix-cgx: Version bump.
- * sci-libs/calculix-ccx: Version bump.
- * sci-libs/cgnstools: Version bump
- * sci-libs/cgnslib: Version bump, restricted to <sci-libs/hdf5-1.8
- * [sci-chemistry/almost] Fix manifest (Portage version: 2.2_rc40/git/Linux x86_64) (Signed Manifest commit)
- * Bug #282174 was fixed. Removed workarounds from ebuild.
- * Manifest
- * sci-chemistry/mrbump superpose fix
- * [eclass] Update openib.eclass
- * [sys-block/tgt] we need to wait for 1 second to setup tgtd (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * [sys-block/tgt] update tgtd init.d (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * [sys-block/tgt] make ebuild eapi=2 (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * [sys-block/tgt] Update patch (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * sci-mathematics/pest-11.3: Updated copyright line in header
- * sci-mathematics/pest-11.11: Version bump. New web site and download.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * [qgis-9999] when enabled, depend on python with sqlite support (needed for OSM plugin)
- * fix for bug 282503
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sci-libs/cbflib QA rpath and soname fixed
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * fixed bug 238300
- * New package, ebuild written by me
- * New package, ebuild written by me
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * [sys-infiniband] Update rds-tools
- * [eclass] Update openib eclass
- * [eclass] Update openib eclass
- * [eclass] Update openib eclass
- * [eclass] Update openib eclass
- * [sys-infiniband] Add rds-tools
- * [sys-infiniband] Add missing dep to ibutils
- * [sys-infiniband] Add ibutils
- * [sys-infiniband] Add ibutils
- * [sys-infiniband] Add patch for OSM
- * [sys-infiniband] Add patch for OSM
- * [sys-infiniband] Update to OFED 1.4.1
- * [sys-block/tgt] Version Bump to 0.9.8 (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Rewritten version of sci-mathematics/Macaulay2 to fix QA issues.
- * removed hdf5 now in main tree
- * Add blocker against app-text/lcdf-typetools when vt is enabled. #281318
- * Add blocker against app-text/lcdf-typetools when vt is enabled. #281318
- * Remove -I hack for fortran
- * manifest
- * PYTHONPYTH fix and configure cut
- * collision ccp4i and mrbump
- * right clustalw added to overlay
- * x11-libs/libjwc_f add patch until ccp4 6.1.2
- * x11-libs/libjwc_cfixed the fix
- * libjwc update to 6.1.2 and as-needed fix
- * another blocker
- * fix for bug 281734
- * sci-chemistry/mrbump -- typo fixed in RDEPEND
- * sci-chemistry/mrbump dependency added
- * mrbump dependency fixed
- * fixes mrbump collision fixes some variables
- * [sys-infiniband/librdmacm] Add libibverbs to depend (Portage version: 2.2_rc38/git/Linux i686) (Unsigned Manifest commit)
- * sci-mathematics/freefem++: version bump.
- * sci-chemistry/imosflm -- IMOSFLM_VERSION is set by sci-chemistry/imosflm
- * sci-chemistry/ccp4-apps -- IMOSFLM_VERSION is set by sci-chemistry/imosflm
- * Another git add . block for <sci-chemistry/ccp4-6.1.2
- * sci-chemistry/imosflm rewritten compile phase
- * ccp4 USE db renamed to balbesdb as suggested by Donnie and Afrever
- * mmdb blocks !! ccp4-libs
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * ccp4-apps Manifest renewel due to merge
- * ccp4i -- fixes to remove imosflm
- * ccp4 setup.sh part 2
- * imosflm bump and lib fix
- * sci-chemistry/ccp4-apps fix for bash/sh compatibility
- * .
- * fix manifest
- * keyworded ~amd64 after testing
- * remove keywords. live version should not be installed by accident
- * ingleborough is released
- * balbes-db PDEPEND handled by sci-chemistry/ccp4
- * ccp4 -- balbes is now optionall
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sys-cluster/scalasca DOCDIR fix (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sys-cluster/scalasca version bump (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * trry to build libmmdb seperatly
- * libmmdb build seperatly
- * coot gcc-4.4 compatibility is fix by upstream
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sync openmpi-1.3.3 with portage.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * mmdb version bump added, needed for coot
- * ccp4-6.1.2 tarball changes -- Manifest update
- * pointless masked
- * pointless version bump
- * burrow-owl has some fixes from upstream now
- * Adjusted DEPEND and RDEPEND.
- * burrow-owl added from donnies overlay
- * =sci-chemistry/burrow-owl-9999_pre15 masked
- * ccp4-libs -- libccif.so gets build correctly on amd64
- * reduce firxes for bug 280857 & 280858
- * starparse keyworded for ~x86
- * coot -- fixes for gcc4.4 and glibc-2.10
- * where does *.seave come from
- * scale for 6.1.2!
- * sci-libs/balbes-db ready for 6.1.2
- * nmrpipe ver bump 5.0.2009.203.18.54
- * repoman told about additional lines
- * ccp4-apps imosflm excluded
- * ccp4 cleanup and transmission to ccp4-6.1.2
- * molrep version bump
- * xia bump for ccp4-6.1.2
- * ccp4-apps which I broke somehow are fixed now
- * pointless bump
- * guile-www bump
- * ccp4-6.1.2 deps masked
- * ccp4-apps transmission ccp4 --> ccp4-apps and ccp4 as meta package
- * dev-tcltk/tablelist version bump
- * sci-libs/med: Just updated SRC_URI; repoman is not yet happy :-S
- * sci-libs/cgnsfoam: Initial import to science overlay
- * sci-libs/libcgnsoo: Initial import to science overlay
- * [sci-biology/wgs-assembler] Update manifest (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * pymol-1.2.1 is in tree, lets remove it from Manifest
- * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
- * Added to portage tree.
- * removed keywords
- * Version bump
- * re-manifest
- * Modified stuff and skymaker licenses
- * the new ccp4-apps package masked
- * ccp4i adapted to ccp4-apps
- * ccp4 -- ccp4-apps
- * RDEPEND fixed
- * ccp4 --> ccp4-apps
- * starparse Manifest fix and tree version removed
- * netcdf removed and bug 279817 filed
- * scala masked
- * scala added -- to be excluded from ccp4
- * pymol cleanup to move to the tree as requested by fauli in bug 269119
- * [sys-infiniband] Deps cleanup
- * version bump netcdf to 4.0.1 hdf5 support and any new features is not included yet
- * molrep bump to 10.2.33
- * ccp4-libs bumped to 6.1.2
- * ccp4i bump to 6.1.2
- * masked ccp4i-6.1.2
- * here we can sort and store patches which are used by multiple packages to create tarballs out of them which can be mirrored
- * update-monomers-db fixed --> sha256sum ouput
- * automatic bump
- * tinker now builds
- * [sci-astronomy/skymaker] Update Manifest (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * gabedit version bump requested by Maximilian Bräutigam bug 279438
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * suff initial import
- * skymaker: version bump
- * RASLIC license added
- * balbes-db files permission QA
- * Jligand has some internal wierdness
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * In main tree
- * tinker bump to 5.0
- * sci-chemistry/jligand -- written by me
- * Version bump
- * In main tree
- * Revert "In main tree"
- * In main tree
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * In main tree
- * sci-chemmistry/rasmol version bump 2.7.5
- * cbflib fix for fortran compatibility
- * sci-libs/neartree written by me
- * sci-libs/neartree written by me
- * dev-libs/cvector written by me
- * Merge branch 'freefem++-3.4'
- * sci-mathematics/freefem++: fix dependencies for document building, cleanup old files for freefem++-3.2.
- * jana200 for Hannes Krüger
- * changed sys-cluster to sys-infiniband in DEPEND
- * updated Manifest
- * changed "sys-cluster" to "sys-infiniband" in dependency spec.
- * nmrpipe version bump
- * remanifesting
- * removed old cpl
- * esorex version bump
- * gasgano version bump
- * added prroper license
- * Initial import of kapteyn
- * sci-libs/oasa: Version bump to 0.13.1
- * sci-chemistry/wxmacmolplt: Version bump to 7.3
- * sci-libs/cgnslib: executable rights for adf2hdf/hdf2adf
- * [sys-infiniband] Move Infiniband Here
- * [eclass] Update OpenIB eclass
- * atpy initial import
- * vo initial import
- * add romio to mpi dep
- * aplpy version bump
- * pywcs version bump
- * sci-libs/gmsh: Version bump; del hdf5 patch; dep fixes; EAPI=2
- * Links now directly against libcgns; Changed to EAPI=2
- * Installs ADF.h even without hdf5 USE-flag
- * Added patches from debian; changed to EAPI=2
- * version bump for cforms
- * cbflib bump to 0.8.1
- * Merge branch 'master' of ssh+git://134.94.85.9//data/local/science
- * cbflib version bump
- * sci-chemistry/openbabel-ruby: Version bump to 2.2.2
- * sci-chemistry/openbabel-python: Version bump to 2.2.2
- * sci-chemistry/openbabel-perl: Version bump to 2.2.2
- * remove old version of cadabra
- * update to cadabra 1.14
- * Deleted old ebuild.
- * Version bump.
- * change Grass to wxwidgets USE flag
- * add qgis libe ebuild for SVN trunk
- * Fix up patch to apply to rc1
- * Modified patch
- * anifest
- * add a copy of pymol-1.2_rc1-shaders.patch too...
- * Changelog
- * fix Manifest
- * copy pymol-1.2_rc0-data-path.patch pymol-1.2_rc1-data-path.patch
- * clipper bump
- * mtz2sca DESCRITPION fixed
- * mtz2sca added
- * Initial add mtz2hkl Thanks to jlec for writting this ebuild pending bug is 278048
- * fix manifests after merge conflict and wrong choice :-/
- * change the postgres dep for qgis and grass
- * now cns Manifest is fixed
- * cns manifest fix
- * fixed bug 277829
- * clipper depends on fftw
- * readded the j1 in ccp4
- * Fix attribution
- * New package, bug 119636
- * live ebuilds are live ebuilds and do not have reviesions
- * ccpn -- QA typo fixed and old patch removed
- * clipper LDADD -> LIBADD
- * ccp4 --disable-mosflm
- * aria added to overlay
- * fixed src-tarball name for aria
- * cns -- aria support, ixes for bug 247579 and 276308, LDFLALGS are respected now, some QA
- * ccpn -- python[ssl]
- * fixed drawxtl dep to fltk:1,1
- * pymol -- media-video/mpeg-tools dep added
- * remove keywords
- * make sure gdal does not compile against grass and make qgis depend on this fixed gdal version
- * make sqlite optional for qgis-1.1.0 and clean up some issues
- * sci-geosciences/qgis - remove unneeded patch, add development version
- * update deps - in java overlay
- * update deps - in java overlay
- * initial import of new versions of Grass, QGIS, gdal and gdal-grass. The gdal-grass lib will resolve the current situation of circular dependencies between gdal and grass in portage and make depending on gdal-grass support easier.
- * coor clipper dependency fixed
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * treectrl bump
- * mpi.eclass: mpi_doman fixes.
- * Version bump. Changed dependency and added test (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * pymol -- vmd and numpy support added
- * mosflm CFLAGS fix -- Thanks Donnie for pointing that out
- * In main tree
- * pymol bump to secaond release candidate for 1.2
- * drawxtl fix -- upstream ships objects
- * drawxtl version bump thanks Hannes Krüger for the ebuild
- * refmac version bump and test QA
- * pymol has two buildsstems. We use the distutils one.
- * rci ebuildlayout fixed
- * resort dependencies in ccp4
- * ccp4i depends on media-gfx/graphviz
- * ccp4i baubles fix
- * cctbx is depending on shelx for amd64
- * pointless bump
- * Donnie says pointless works for him
- * xia doesn't use specific pointless version
- * xdsi kpdf -> xpdf fix
- * In gentoo-x86
- * In gentoo-x86
- * xdsi dep fix
- * another syntax fix
- * reverted
- * CCP4_SCR fixed
- * ccp4i -- superpose renamed to superpose-ccp4
- * missing dep of xia2 added
- * ccp4-libs aadditional bin installation
- * xia license changed to BSD
- * xia depends on right ccp4 version
- * ccü4 needed for xia
- * xia version bump
- * balbes-db now in right place
- * ccp4 userpriv and usersandbox fixed
- * ccp4 upstream ctruncate patch included next version added
- * caver bump
- * cealign QA
- * masked ccp4 6.1.2
- * molrep bump
- * sys-cluster/pyslice: Forgot to commit the ChangeLog.
- * sys-cluster/pyslice: Version bump. Fixed DEPEND and RDEPEND.
- * sci-mathematics/mdp: Version bump. Fixed DEPEND and RDEPEND.
- * sci-geosciences/tappy: Version bump. Fixed DEPEND and RDEPEND.
- * sci-geosciences/tappy: Version bump. Fixed DEPEND and RDEPEND.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sci-mathematics/mdp: Version bump to 2.5. Fixed DEPEND and RDEPEND.
- * newbin > exeinto+newexe. Thanks jlec
- * refmac bump, test still broken
- * Fix empi install location.
- * pymol 1.2 rc0
- * pymol nosplash fix for Je_fro
- * refmac test.log patch fix
- * metadata.xml fixed
- * refmac test improved
- * xdsi added
- * xdsstat-bin added
- * pymol src_unpack fix (thanks to Rene Meier)
- * refmac bump
- * empi: Fix the location of the changelog.
- * Bump mpi.eclass. See sys-cluster/empi-0.6 ChangeLog for details.
- * Remove app-admin/eselect-mpi, included in sys-cluster/empi.
- * Bump empi-0.6, see included changelog for details.
- * Version bump (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Initial import pywcs
- * Initial import of aplpy
- * Added dependency on libtool-2 and szip-2
- * another pymol splash fix
- * coot live fix
- * refmac fixes and version bumps
- * monomer fix
- * refmac version bump hosting of apbs patch
- * refmac -- make download of test sets conditionally
- * test version of hdf5-1.8.x import
- * test version of hdf5-1.8.x import
- * refmac test case added
- * monomer-db crap fixed
- * refmac experimental version bump
- * final fix for update-monomers-db
- * automatic bump
- * automatic bump
- * automatic bump
- * automatic bump
- * automatic bump
- * automatic bump
- * automatic bump
- * fix of update-monomers-db
- * automatic bump
- * talos+ QA
- * refmac bump
- * [metadata] add metadata layout.conf and git ingore for users who wants to use cache generated by layman
- * refmac bump
- * masked gromacs live ebuilds
- * sci-chemistry/gromacs: added live ebuilds for old, stable, experimental branch (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * sci-chemistry/gromacs-4.0.4: Fixed some repoman errors (Portage version: 2.1.6.13/git/Linux i686) (Signed Manifest commit)
- * in portage
- * masked new monomer-db
- * monomer-db reversioning and addition of "maybe" unstable monomer-db This has to be involved
- * refmac unstable bump and dep to new monomer-db added
- * dev-python/h5py-1.1.0: Fix SRC_URI and digest.
- * [sci-chemistry/icm] Add new ebuild (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * keyworded coot-9999.ebuild and added new coot-data as dependency
- * simplify apbs patch for pamol -- Donnie told to go the most easy way for the maintainer
- * cara rdepend fixed
- * sci-visualization/ferret-bin: Forgot to commit the Changelog.
- * sci-geosciences/xtide: Fixed copyright years. Removed '~x86' from keywords because repoman complained.
- * sci-libs/scikits_timeseries-0.91.1: Fixed DEPEND, RDEPEND, and metadata.xml.
- * sci-visualization/ferret-bin-6.1: Fixed RDEPEND.
- * sci-libs/scikits_timeseries-0.91.1.ebuild: Initial ebuild. Please file bugs at http://bugs.gentoo.org/show_bug.cgi?id=274430
- * sci-visualization/ferret-bin-6.1.ebuild: Initial ebuild. Report bugs at http://bugs.gentoo.org/show_bug.cgi?id=274425
- * pymol bump to beta7
- * >=dev-lisp/cmucl-19e : needed by sci-mathematics/pvs
- * Hopefully last patch to opendx for a while
- * shiftx added
- * digest
- * Manifest
- * fix patch
- * Add fix from Christian Becke in bug #237634. Hopefully this doesn't break things for anyone else :)
- * Remove old sys-cluster/hpl version.
- * Sync sys-cluster/hpl with gentoo-cvs
- * Remove old openmpi versions.
- * Openmpi to EAPI=2, Sync ebuild with gentoo-cvs. Fix install location of vt include files when using empi.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Merge branch 'freefem++-3.3'
- * sci-mathematics/freefem++: Version bump, now FHS comliant.
- * ccp4 -- molref not installed anymore -> linked against libs we don't want to depend on
- * frama-c: more clean ups.
- * clean ups.
- * sci-geosciences/tcd-utils: Correct bug in 20080820 ebuild, no longer needs $S specified.
- * sci-geosciences/tcd-utils: Version bump to 20080820. Updated copyright year.
- * sci-geosciences/swmm: Missed the Manifest file.
- * sci-geosciences/harmonics-dwf-free-noncomm: Fixed header copyright date.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sci-geosciences/harmonics-dwf-free: Version bump to 20081228.
- * sci-geosciences/harmonics-dwf-free-noncomm: Version bump to 20081228.
- * sci-geosciences/libtcd: Version bump to 2.2.4. Add 'non-commercial' use flag to use.local.desc.
- * ccp4libs cleanup
- * pointless fix dependency
- * ccp4-libs another linking problem fixed
- * ccp4 examples are now optional
- * another linking thing in ccp4-libs
- * working pointless for Donnie
- * pymol rekeyworded
- * talos+ written
- * [sys-block/tgt] Update deps (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-block/tgt] Update patch (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-block/tgt] Fix Makefile (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-block/tgt] Fix install (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-block/tgt] Fix install (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * [sys-block/tgt] Initial import (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-geosciences/swmm Version bump + minor change to edit Makefile
- * dev-python/h5py: Version bump to 1.1.0
- * masked pointless
- * cctbx should be linkable now
- * pointless added
- * talos+ added
- * nmrpipe is on the way to be fixed
- * cctbx fixes
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * xds-bin: bump to 20090327.
- * fixed coot KEYWORD
- * mask live ebuilds
- * live coot added
- * pymol live ebuild added
- * refmac bump and fix the eclass usage
- * coot: fix as-needed build.
- * Fix mrbayes building with mpi but without empi.
- * coot fixed
- * coot QA fixes and EAPI="2" for Donnie
- * refmac qa
- * Add a mpi.eclass version of mrbayes.
- * rasmol QA
- * cleaner glibc-2.10 fix in ccp4
- * updated version of coot -- upstream includes our patches
- * ccp4-libs version cleanup
- * coot prereleases added
- * ccp4-lins fix for glbic-2.10 (getline problem) bug 270615
- * ccp4 glibc-2.10 getline fix bug 270617
- * refmac experimental version bumped
- * Fixing Manifest and EAPI location in LiE, modglue and cadabra
- * mama manifest fixed
- * opencascade now implictly rely on X when USE="opengl"
- * phaser should work now
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * missing phaser patch added
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * phaser added thanks to Johan Hattne
- * phaser licenses added
- * old cctbx version removed
- * refmac experimental version bump
- * refmac bump to refmac-5.5.0095
- * mmtk: set PYTHON_MODNAME.
- * gabedit: new ebuild for a computational chemistry GUI.
- * patch fixed
- * mgltools manifest fixation
- * nmrpipe version bump to 5.0.2009.103.20.08
- * nmrpipe
- * Manifest fix
- * last fix of nmrpipe env, now it works
- * another fix in the nmrpipe env file
- * new nmrpipe env
- * mmtk: fix location of .so modules, and dep on Scientific >=2.6.
- * mmtk: bump to 2.6.0.
- * manifest fix
- * version bump of refmac A problem related with TLS has been fixed. The problem was that not in all cycle TLS contributions were added to B values and that could make refinement unstable.
- * mgltools-webservices dependency fix
- * zsi removed -- in tree
- * clipper version bump
- * sci-mathematics/freefem++: New ebuild for freefem++-3
- * in tree
- * Moving definition of INSPATH
- * Add arches for testing
- * Fix dying
- * [sci-chemistry/pdb2pqr] Drop accidently added keywords and add gcc-4.4 patch (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * masked nmrpipe-9.27.2009.120.14.28 for tsting
- * prelimary ebuild of nmrpipe
- * masked nmrpipe
- * clipper version bump
- * refmac version bump
- * fixed a typo
- * mask gnuplot-cvs
- * added gnuplot-cvs ebuild (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * added dev-tex/picins (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * ccpn added missing dep and fixed python > 2.4 incompatibility
- * added sci-libs/xdrfile-1.1b (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * Manifest fix
- * fixed a typo in clipper-config and migrated frem sed to patch
- * clipper-config changes included
- * Add ~amd64 keyword and gcc-4.4 patch (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * clipper-config fixed
- * dev-tcltk/img_rotate added
- * anigif update
- * correct versioning of zsi in dev-python/opal-client
- * sci-chemistry/mgltools fix USEdep
- * sci-chemistry/mgltools-stride missing license added
- * sci-chemistry/mgltools-utpackages missing license added
- * UTPackages license added
- * mgltools unmasked
- * old togl removed
- * sci-chemistry/mgltools-opengltk cannot depend on external togl
- * dev-tcltk/togl-1.7 added, needed by mgltools
- * dev-python/zsi upstream released the alpha
- * mgltools-webservices another fix
- * mgltools-volume another fix
- * mgltools-visionlib another fix
- * mgltools-vision another fix
- * mgltools-viewer-framework another fix
- * mgltools-utpackages another fix
- * mgltools-symserv another fix
- * mgltools-support another fix
- * mgltools-stride another fix
- * mgltools-sff another fix
- * mgltools-scenario another fix
- * mgltools-qslimlib another fix
- * mgltools-pyglf another fix
- * mgltools-pybabel another fix
- * mgltools-pyautodock another fix
- * mgltools-pmv another fix
- * mgltools-opengltk another fix
- * mgltools-networkeditor another fix
- * mgltools-molkit another fix
- * mgltools-mglutil another fix
- * mgltools-gle another fix
- * mgltools-geomutils another fix
- * mgltools-dejavu another fix
- * mgltools-cmolkit another fix
- * mgltools-bhtree another fix
- * mgltools-autodocktools another fix
- * sci-chemistry/mgltools fixup
- * sci-chemistry/mgltools-autodocktools fixup
- * sci-chemistry/mgltools-bhtree fixup
- * sci-chemistry/mgltools-cmolkit fixup
- * sci-chemistry/mgltools-dejavu fixup
- * sci-chemistry/mgltools-geomutils fixup
- * sci-chemistry/mgltools-gle fixup
- * sci-chemistry/mgltools-mglutil fixup
- * sci-chemistry/mgltools-molkit fixup
- * sci-chemistry/mgltools-networkeditor fixup
- * sci-chemistry/mgltools-opengltk fixup
- * sci-chemistry/mgltools-pmv fixup
- * sci-chemistry/mgltools-pyautodock fixup
- * sci-chemistry/mgltools-pybabel fixup
- * sci-chemistry/mgltools-pyglf fixup
- * sci-chemistry/mgltools-qslimlib fixup
- * sci-chemistry/mgltools-scenario
- * sci-chemistry/mgltools-sff fixup
- * sci-chemistry/mgltools-stride fixup
- * sci-chemistry/mgltools-support fixup
- * sci-chemistry/mgltools-symserv fixups
- * sci-chemistry/mgltools-utpackages fixups
- * sci-chemistry/mgltools-viewer-framework fixup
- * sci-chemistry/mgltools-vision misses file to install
- * sci-chemistry/mgltools-vision fixup
- * sci-chemistry/mgltools-visionlib fixup
- * sci-chemistry/mgltools-volume fixup
- * sci-chemistry/mgltools-webservices fix little typo
- * sci-chemistry/mgltools-webservices fixup
- * sci-chemistry/mgltools little fix
- * sci-chemistry/mgltools masked for testing
- * sci-chemistry/mgltools added
- * manifest fix
- * sci-chemistry/mgltools-autodocktools added
- * sci-chemistry/mgltools-dejavu added
- * sci-chemistry/mgltools-molkit added
- * sci-chemistry/mgltools-networkeditor
- * sci-chemistry/mgltools-pmv added
- * sci-chemistry/mgltools-pyautodock added
- * sci-chemistry/mgltools-pybabel added
- * mgltools-qslimlib added
- * mv libgfx from media-gfx to media-libs
- * media-gfx/libgfx added
- * sci-chemistry/mgltools-support added
- * sci-chemistry/mgltools-utpackages aadded
- * sci-chemistry/mgltools-viewer-framework added
- * sci-chemistry/mgltools-vision added
- * sci-chemistry/mgltools-visionlib added
- * sci-chemistry/mgltools-volume added
- * sci-chemistry/mgltools-WebServices added
- * sci-chemistry/mgltools-bhtree added
- * Manifest fix
- * sci-chemistry/mgltools-cmolkit added
- * sci-chemistry/mgltools-geomutils added
- * sci-chemistry/mgltools-gle added
- * mgltools-mglutil added
- * Manifest fix
- * sci-chemistry/mgltools-opengltk added
- * togl updated
- * Togl license removed as it is BSD
- * sci-chemistry/mgltools-pyglf added
- * sci-chemistry/mgltools-scenario added
- * simpy version bump
- * sff small change
- * sci-chemistry/mgltools-sff added
- * mgltools-samserv added
- * little fix in mgltools-stride
- * mgltools-stride added
- * Update scalasca ebuild (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * refmac fix
- * ccp4i manifest fix
- * Added to portage
- * fixed a bug in scalasca (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * sci-mathematics/freefem++: cleanup, fix copyright notice and Manifest
- * app-vim/freefem++-syntax: cleanup, fix copyright notice and Manifest
- * added scalasca licence
- * added sys-cluster/scalasca ebuild (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * Added sci-physics/espresso ebuild (Portage version: 2.1.6.11/git/Linux i686) (Signed Manifest commit)
- * fix typo (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * add mounting facility support for initscript in case of using nufa (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Update ebuild (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Update ebuild (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Update ebuild (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Update ebuild (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * Add glusterfs. big #167955 (Portage version: 2.2_rc33/git/Linux x86_64) (Signed Manifest commit)
- * QA review of dssp
- * sci-chemistry/dssp added
- * ccp4i clean up
- * dssp license added
- * Manifest fixed for updated patches
- * ccp4 upstream patch included -- bug 269504
- * ccp4 upstream patch included -- bug 269504
- * ccp4 upstream patch included -- bug 269504
- * ccp4i QA
- * sci-chemistry/chooch autotools based build system fixed
- * moved sci-libs/chooch to sci-chemistry/chooch part two
- * moved sci-libs/chooch to sci-chemistry/chooch
- * sci-libs/chooch unmasked
- * chooch working verion ready
- * fix opendx manifest before pushing to the overlay
- * small fix to an opendx patch.
- * Nothing in overlay should be executable
- * patches should not be executable
- * Licenses should not be executable
- * secong typo fixed
- * Manifest fixation (Portage version: 2.2_rc33/git/Linux x86_64) (Unsigned Manifest commit)
- * New package: sci-mathematics/4ti2 Corresponding bug is #269472
- * fixed typo
- * bump almost to adept to boost 1.3.6
- * new revision of opendx and import of a new version of opendx-samples to cope with it.
- * fixed bug 266470
- * zsi SRC_URI fixed.
- * direx unmasked
- * direx license added
- * direx ebuild completed
- * thanks alexxy for breaking my push
- * sorry for segf with eix
- * Rename wrong ebuild (Portage version: 2.2_rc33/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * mask direx
- * direx added but masked
- * refmac Manifest fix
- * refmac experimantel version bump
- * Fix for bug #268064
- * Updated a dependency
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * Fixes an issue with docs improved ebuild
- * litlle QA
- * updated digest. sorry.
- * Proper patch for frama-c
- * I've separated two patches for consistency.
- * DESCRIPTION corrected
- * DESCRIPTION corrected
- * Fixed typos in Changelog
- * New package sci-mathematics/polymake
- * Latest added to portage, thanks!
- * csrosetta-pdbh added
- * csrosetta-angless cp section gives response now
- * csrosetta-cs added
- * csrosetta-angless added
- * blast-db can include one db more
- * RCI added
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * ntl -- bumped the ebuild to 5.5. Fixed error if LDFLAGS have "--" inside.
- * Fix license
- * New package sci-biology/newbler
- * moving to portage
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Moved to portage
- * Moved exonerate to portage.
- * perlprimer updated ~x86 added and one dep fixed
- * cleand up
- * adopted balbes-db to new monomers-db package
- * Another fix of coot-data PATHs
- * New package
- * sci-biology/ncbi-tools++ fixed libdir (Portage version: 2.2_rc31/git/Linux i686) (Unsigned Manifest commit)
- * zsi SRC_URI changed
- * update of update-monomer-db
- * opal-python blocks sci-chemistry/apbs-1.1.0
- * fix ccp4 data dir path in coot-data
- * fix ccp4 data dir path in monomer-db
- * fixed data dir path in ccp4-libs
- * New package
- * aloow tcl/tk-8.5 with imosflm
- * rewind the mask of imosflm as it totally broken with tcl 8.5
- * mask sci-chemistry/imosflm-1.0.0-r1.ebuild test version for tcl/tk-8.5
- * refmac bump
- * coot-data fix
- * monomer-db install path corrected dudes be carefull when setting such things
- * coot-data bumped to reflect the existence of sci-libs/monomer-db
- * bumped experimental refmac and adopted patch
- * cleaned molrep and added src_test
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * fix epatch (Portage version: 2.2_rc31/git/Linux x86_64) (Signed Manifest commit)
- * add block to apbs (Portage version: 2.2_rc31/git/Linux x86_64) (Signed Manifest commit)
- * needed apbs bump
- * more molrep fixes
- * molrep version bump and some fixes
- * update-monomers-db added
- * sci-libs/monomer-db added
- * imosflm HOMEPAGE fixed
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * ccp4-libs: moved momoner-db to seprate ebuild
- * refmac 5.6 masked
- * refamc bumped to experimental version
- * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci
- * moved scripts from Documentation to scripts part 2
- * moved scripts from Documentation to scripts
- * New Package: sci-mathematics/Macaulay2 (Bug #246095)
- * first version of automatic bump script for blast-dbs checked in
- * fixed install phase (Portage version: 2.2_rc31/git/Linux x86_64) (Unsigned Manifest commit)
- * New package
- * removed bundled opal and ZSI from apbs (Portage version: 2.2_rc31/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/tinker ~amd64 added see bug 263006 (Portage version: 2.2_rc31/git/Linux x86_64) (Unsigned Manifest commit)
- * fix cadabra's manifest
- * sci-chemistry/jmol update to 11.6
- * sci-chemistry/tinker LDFLAGS respect added and X support removed because jav3d-bin is totaly broken but there is a src package in java-overlay dev-java/j3d-core
- * bug 262905 digest thing fixed
- * Manifest fix
- * apbs checkin
- * version bump of pdb2pqr
- * dev-python/opal-client fix DEST PATH
- * Manifest fix
- * dev-perl/opelclient added
- * ChnageLog entry added
- * zsi version bump
- * opal license added
- * cleanup
- * New package, bug 121921
- * removed guile-gui as it is keyworded in the tree now
- * Fix DEPEND line
- * cleaning of the cadabra related ebuilds.
- * continuing opendx renovation
- * Important bump of ccpn which fixes the 1D bug
- * Removed herwig and cernlib-montecarlo, changed applied to the tree
- * New package
- * Bump
- * importing opend from the main tree
- * fix coot license to GPL-3 which has been changed since Jul 02, 2007
- * Added zarja
- * another qa for pymol Thanks bicatali
- * QA on pymol
- * removed flexdock as it is already in java-experimental
- * app-arch/lbzip2 fixed src_test according to the suggestions of Daniel Lin
- * Manifest fix
- * fixes things from lbzip2
- * removed additional patchs
- * dev-java/flexdock-0.5.1 added It is a dep of the new scilab version
- * removed use description from old packages
- * lbzip2 version bump and src_test fix
- * fix missing files in install
- * app-arch/lbzip2 added
- * rosetta USE="doc" is broken --> removed. See online docs instead https://www.rosettacommons.org/software/academic/3.0/rosetta3_user_guide/
- * "sci-chemistry/rosetta-tools added"
- * refmac version bump to ...90
- * sci-chemistry/rosetta added
- * dev-libs/libunzip added
- * renamed: generate_tarball.sh -> generate_boinc-src_tarball.sh fixed: libboinc_zip.a can now be build uses system libzip.a and libunzip.a
- * To main tree
- * sci-mathematics/freefem++: fix building the documentation with >=app-text/texlive-2008 app-vim/freefem++-syntax: moved download location to omploader
- * pymol version bump to beta 6
- * blast-db added
- * rosetta-fragments added
- * psipred added
- * license psipred added
- * rosetta-db DESCRIPTION changed
- * fix some zip things in generate_tarball.sh
- * Edited generate-tarball.sh so that only the bundled zip stuff is kicked out but the libboinc_zip.a could still be build
- * cleaned the sci-libs/symmetrica ebuild by porting it to EAPI2
- * changed the homepage for sci-libs/modglue
- * Removed udav now in main tree
- * Removed scidavis now in main tree
- * rosetta licenses added
- * sci-chemistry/ccpn version bump to 2.0.7
- * removed libf2c, now in main tree
- * phun-5.28.ebuild
- * sci-chemistry/ambertools removed as I gave up getting chimera in
- * added a patch for cadabra solving the --as-needed problem
- * To main tree
- * frama-c and why + dependencies new ebuilds
- * To main tree
- * New package sci-biology/mauve
- * libmems, libmuscle, libgenome - deps of sci-biology/muscle
- * updating manifest related to cadabra
- * Importing cadabra and its dependencies modglue and lie
- * Fix license
- * New package sci-biology/shrimp
- * New package sci-biology/mpiblast
- * Removed mathgl, in main tree
- * tnt version bump
- * pyglet version bump
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Fix manifest, again
- * Remove envd file from ebuild and manifest as well.
- * Remove envd file, no longer necessary.
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sys-cluster/mpich2 Manifest fix
- * sys-cluster/mpich2: fix #259805 by backing out the site-packages fix. It'll be better off just sent directly to upstream.
- * Fix undeclared local variable.
- * Phun version bump
- * New package sci-biology/signalp
- * New license signalp for package sci-biology/signalp
- * pymol version cleanup and patch fix
- * USE lua added to cara
- * !media-libs/raptor removed from ccp4
- * sci-chemistry/ccp4 unmacked
- * sci-chemistry/ccp4i bump due to change in recmac5.tcl
- * sci-chemistry/ambertools update but still problems
- * reviewed version of clapack
- * sci-libs/clapack RDEPEND missing
- * sci-libs/clapack added
- * removed .svn and added ChengeLog entry
- * dev-libs/libf2c version bump
- * sci-chemistry/ambertools added
- * sci-chemistry/ambertools masked
- * www-apps/SwishE added
- * dev-scheme/guile-gui added for testing on ~amd64 pending bug is 259599
- * tr src_install fixed
- * sys-devel/ucpp added
- * x11-libs/tr added
- * mmtk Chnagelog added
- * sci-libs/mmtk add with version bump and ~amd64
- * Merge branch 'sci-libs/mmtk-import'
- * sorry duplicated package to tree package
- * sci-chmistry/mdtools added
- * media-libs/freejpeg initial checkin
- * sci-libs/msms added -> bug 209161
- * dev-tcltk/togl added
- * Removed ggobi, now in main tree
- * apbs docs installation to the right place
- * apbs: Ugly automagic removed make --> emake
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * add support for OFED-1.4.1-rc2
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * Drop old versions (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * fix openib-diags (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * fix typo (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * fix opensm (Portage version: 2.2_rc26/git/Linux x86_64) (Signed Manifest commit)
- * sci-libs/libcmatrix license fixed
- * sci-chemistry/gsim die added
- * sci-chemistry/gsim added
- * sci-libs/libcmatrix include destination fixed
- * Fix digests for openmpi.
- * sci-libs/libcmatrix added
- * Bump openmpi-1.3.1
- * apbs fix of doc installation dir
- * tinker fix see bug 241180
- * fix for apbs
- * sci-chemistry/pymol APBS_PSIZE fix
- * use deps fix in apbs
- * sci-chemistry/apbs update Bug 262905
- * dev-libs/punc created
- * sci-libs/superlu update to 3.1
- * sci-libs/libssm added (Portage version: 2.2_rc25/git/Linux x86_64) (Unsigned Manifest commit)
- * In main tree
- * sci-chemistry/openbabel-python: Fix S
- * Made some changes to the ebuild, do not configure in the src_unpack phase.
- * sci-chemistry/pymol-plugins-cealign added
- * sci-libs/balbes-db RESTRICT="binchecks strip" to save time
- * sci-chemistry/refmac version bump to 5.5.0089 \n older versions removed (Portage version: 2.2_rc25/git/Linux x86_64) (Unsigned Manifest commit)
- * Manifest fixed (Portage version: 2.2_rc25/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/ccp4i conflict of rapper with media-libs/raptor (Portage version: 2.2_rc25/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/ccp4 repper --> rappermc renaming
- * sci-libs/cctbx another step to the end moved installdir from pothonsitedir to ${CCP4}/ (Portage version: 2.2_rc24/git/Linux x86_64) (Unsigned Manifest commit)
- * pdb-extract file collision conflict solved
- * sci-visualization/xds-viewer uses new features from cmake-utils.eclass (Portage version: 2.2_rc24/git/Linux x86_64) (Unsigned Manifest commit)
- * cctbx fixing sinstalltion of some shell scripts
- * xds input templat compression changed (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-libs/cctbx total rewrite of src_install (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * cctbx-2009.02.15.2320-r2 masked
- * Change versioning to match internal package versioning
- * New package sci-biology/miranda
- * New package sci-biology/miranda
- * sci-chemistry/xds-bin EPAI2fied (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/pymol version bump to 1.2b5 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * sci-chemistry/phaser masked until all tests are passed
- * New package sci-biology/infernal
- * xds-viewer version bump to 0.6
- * sci-chemistry/ccpn now respects LDFLAGS and is as-needed ready
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * cctbx scons fixes ASRP license added
- * sci-libs/pycifrw initial checkin
- * In gentoo-x86
- * coot: update ccp4-libs/clipper deps to current versions.
- * Remove -static
- * Add metadata
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * cctbx now depends on system scons
- * Remove webcheck option by default
- * Fix changelog
- * New package sci-biology/plink, bug 224017
- * sci-libs/cctbx fixed and initial push Have fun and don't complain: THE BUILDSYSTEM IS CRAPPY!
- * Merged sci-libs/cctbx from my overlay into sci overlay sci-chemistry/cbflib fixing LDFLAGS respect
- * revert messed up commits
- * sci-chemistry/xia version bump to 0.2.7.2 and fixing fperms --> chmod
- * corrected linking gcc-config -X --> gcc-config -L
- * ccp4i first patch set included
- * sci-libs/balbes wierd code fixes
- * sci-libs/clipper added as RDEPEND because it sin't build anymore
- * New package sci-biology/mothur
- * New package sci-biology/dotur
- * New package sci-biology/dotur
- * New package sci-biology/dotur
- * sci-chemistry/openbabel-ruby: Version bump to 2.2.1
- * sci-chemistry/openbabel-python: Version bump to 2.2.1
- * sci-chemistry/openbabel-perl: Version bump to 2.2.1
- * ccp4i: fixes for finding smartie.
- * ccp4: try to get PYTHONPATH right.
- * ccp4,ccp4i: rename truncate to ftruncate, build clipper progs, cleanup.
- * clipper: bump, and stop installing examples.
- * last cctbx changes
- * libxdl_view: fix with --as-needed by linking libX11/libXt & adding deps.
- * ccp4: reindent deps.
- * ccp4: clean up cruft in weird places (files/delete/, *.bak).
- * coot: pull in newly split clipper.
- * ccp4-libs: make it suck less.
- * clipper: bump to 20081201
- * sci-chemistry/rasmol dep fix (x11-libs/vte)
- * sci-libs/cbflib total cleanup include dir permissions fixed
- * ccp4-libs nearly good linking
- * rasmol fixed dep --> x11-libs/vte bug 238302
- * sci-libs/cbflib cleanup
- * coot: keyword ~amd64.
- * sci-libs/chooch has automagic deps which aren't fixed --> masked
- * Nessecary fixes in src. Should be fine now.
- * cgraph.h installation fixed linking fixed
- * sci-chemistry/Cgraph submitt
- * sci-chemistry/ccp4 patch cleanup sci-chemiszty/chooch added sci-libs/cgraph added
- * sci-chemistry/molrep added
- * libjwc* docs not installed
- * changed mosflm dep to build w/o ccp4
- * x11-libs/libjwc_c/f added
- * x11-libs/xdl_view added
- * sci-chemistry/openbabel-ruby: Remove untested arches
- * sci-chemistry/openbabel-perl: Remove untested arches
- * sci-chemistry/openbabel-python: Add RDEPEND for OASA and PIL
- * keyword amd64
- * New package sci-biology/codonw
- * sci-chemistry/openbabel-python: Fix ChangeLog
- * sci-chemistry/openbabel-ruby: Fix ChangeLog
- * sci-chemistry/openbabel-perl: Fix ChangeLog
- * sci-chemistry/bkchem: Fix ChangeLog
- * sci-chemistry/bkchem: Split out OASA library (now in sci-libs/oasa)
- * New package sci-libs/oasa (split from BKChem)
- * fix Manifest
- * New package sci-biology/bowtie
- * sci-libs/bables-db Changelog added
- * Merged sci-libs/balbes-db in from dberkholz overlay
- * Removed scamp, now in main tree
- * masked ccp4
- * Merge sci-chemistry/ccp4 from dberkholz overlay to sci fixed missing files in mrbump fixed msflm deps
- * balbes-db clean up for merge
- * sci-chemistry/xia2 metadata.xml added
- * Merged sci-chemistry/xia2 from dberkholz overlay to sci
- * sci-visualization/xds-viewer Good that no one tests my packages so typos won't harm. Typo in SRC_URI fixed
- * Fixing dependencies of xds-viewer
- * In gentoo-x86
- * In gentoo-x86
- * sci-biology/phred in gentoo-x86
- * New package sci-biology/samtools
- * sci-chemistry/refmac version bump to 5.5.0088
- * QA and doc building
- * QA and doc building
- * sci-chemistry/xds version bump at 30 Jan 2009 and handling X changed
- * sci-visulization/xds-viewer added
- * sci-chemistry/chemtool: Fix ChangeLog
- * sci-chemistry/chemtool: Remove unneeded files
- * Manifest fixed
- * sci-chemistry/cara keyworded for ~amd64
- * Version bump (Portage version: 2.2_rc23/git/Linux i686) (Unsigned Manifest commit)
- * sci-chemistry/easychem: Fix strip, bug #252034
- * sci-chemistry/chemtool: Add ebuilds from tree, bug #219528
- * manifest fixed
- * sci-chemistry/pymol version bump to 1.2beta4
- * sci-chemistry/bkchem: Version bump to 0.13.0
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * fixed revision for pymol-1.2_beta3
- * Adjusted Manifest
- * Verion bump
- * remove sed patch
- * sci-libs/gmsh Version bump
- * Push Vampir Trace includes to a subdir. #257086
- * sci-chemistry/stdinchi: Add doc use, fix prestriped files, make honor CFLAGS
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Add 'append-ldflags' to facilitate building for users with --as-needed.
- * New package sci-chemistry/stdinchi
- * sci-chemistry/wxmacmolplt: Put -lGLU back in configure
- * sci-chemistry/wxmacmolplt: Fix DEPEND vs RDEPEND
- * sci-chemistry/wxmacmolplt: Set wxGTK opengl use dependency, flash use
- * sci-chemistry/bkchem: Version bump to 0.12.6
- * sci-chemistry/openbabel-ruby: Use EAPI=2, fix swig use
- * sci-chemistry/openbabel-python: Use EAPI=2, fix swig use
- * sci-chemistry/openbabel-perl: Use EAPI=2, fix swig use
- * imosflm deps fixed and unmasked
- * New package sci-chemistry/openbabel-ruby, #212212
- * New package sci-chemistry/openbabel-python, #212212
- * New package sci-chemistry/openbabel-perl, #212212
- * dev-tcltk/anigif added
- * dev-tcltk/combobox added to sci overlay
- * sci-chemistry/openbabel-2.2.0-r1: New ebuild with doxyfile patch, #212212
- * New package sci-chemistry/bkchem, #95178 (Thanks to Beda Kosata)
- * Merge branch 'master' of ../asd
- * dev-tcltk/tablelist added
- * tktreectrl MANIFEST and Changelog fix
- * Merged dev-tcltk/tktreectrl into sci overlay
- * sci-chemistry/ghemical: Added ghemical package
- * Imosflm checked in but masked because deps are missing or tbw
- * mosflm Changelog and manifest fised
- * Merged sci-chemistry/mosflm from dberkholz overlay to sci overlay
- * mosflm cleaned for merge
- * sci-chemistry/rasmol ChangeLog
- * sci-chemistry/rasmol intial checkin
- * sci-libs/cbflib added
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Remove unused local use flag from metadata for sys-cluster/openmpi.
- * Bump sys-cluster/openmpi-1.2.9.
- * Version bump\! (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * fixed totaly messed up mrbump src_install
- * Make libgmxmopac7.a -fpic library (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Fix typo (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sci-chemistry/mrbump added to overlay
- * Cleaned sci-chemistry/mrbump
- * Add support for qm/mm with mopac7 for gromacs (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Add mopac7 with support library for gromacs (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/ccp4i moved from Dberkholz overlayy to sci Thanks Donnie
- * Manifest fixing
- * New package sci-biology/phred
- * sci-chemistry/ccp4i made ready for merge
- * removed old versions of ccpn as they use hardcoded things and latest is okey
- * Make tk verion not hardcodded (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Add ~amd64 kyword to ccpn; make python not hardocded (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Moved to tree
- * sci-chemistry/pymol bumped to 1.2 beta 3
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Version bump.
- * fix manifests
- * version bump
- * version bump
- * New packages sci-biology/pals, piler, pilercr
- * New package sci-biology/mreps
- * New package sci-biology/lagan
- * New package sci-biology/lagan
- * new package sci-biology/trf
- * GAMESS - Version bump (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Forgot to block the ccp4-6.0* series
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * Merged sci-chemistry/coot from dberkholz-overlay to sci-overlay version bump to 0.5.2 We now build against ccp4-libs
- * Missing line continuation, #259209.
- * Merged dev-scheme/guile-lib-0.1.6 from dberkholz overlay to sci overlay We need this for coot
- * Merged sci-chemistry/coot updates from my overlay into dberkholz-overlay
- * Merged x11-libs/guile-gtk from my overlay into sci-overlay This is an updated version of the tree ebuild Bug is 251793
- * Merged sci-libs/ccp4-libs from dberkholz-overlay to sci overlay Thanks Donnie for your work on this
- * sci-libs/ccp4-libs bumped to 6.1.1 and cleaned for merge into sci-overlay
- * Update HOMEPAGE for icm (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Update deps for icm (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/refmac merged from dberkholz-overlay to sci-overlay
- * Fix syntax (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Update icon for icm-broser (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * sci-chemistry/refamc bumped to latest version (5.5.0085) and polished to submitt into sci overlay
- * Update deps for icm-broser (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Update deps for icm-broser (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Add block to icm-broser (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Add icm-broser (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Add menuentry for icm (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Added herwig flag to cernlib, see bug #257732
- * Added herwig
- * removing, now in main tree
- * Various QA fixes
- * fix compilation of wxmacmolplt (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * sci-chemistry/almost missed to install to headers which are needed to build sci-chemistry/aqva against it.
- * sci-chemistry/azara Typo fix so that LDFLAGS are respected
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sci-chemistry/ccpn version bump to 2.0.6.1
- * Add patch for gcc 4.3 (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Add wxmacmolplt bug #197131 (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * add MolSoft licence
- * Add icm-pro (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Signed Manifest commit)
- * Fix manifest for mpich2 (Portage version: 2.2_rc23/git/Linux x86_64) (Signed Manifest commit)
- * Added the skel files from tree so that we can use tools like echangelog.
- * Fix the mpich2 pkgconfig file, #257921. Mark patchses to be sent upstream.
- * aria and cns changes
- * Update boinc generator script. now server should build.
- * sci-chemistry/procheck moved from Donnies overlay to sci overlay
- * cctbx openmp depency fixed
- * sci-chemistry/pymol-1.2_beta added. I will maintain all beta versions in sci overlay.
- * cctbx fixes with donnie
- * [QA]: Add missing diags USE flag to IUSE
- * [QA]: Remove redundant src_compile, fix SRC_URI for new location
- * [QA]: We need EAPI=1 for SLOT dependencies
- * [QA]: Remove redundant src_compile
- * [QA]: Remove redundant src_compile
- * [QA]: Remove redundant src_compile
- * [QA]: change RESTRICT=nomirror to RESTRICT=mirror
- * [QA]: Remove redundant src_compile
- * Fix Manifest.
- * [QA]: Add test to IUSE
- * [QA]: Order categories file
- * some things added, nothing to mention
- * x11-libs/xview bump and sci-chemistry/nmrpipe
- * Revert "Revert "sci-chemistry/ccpn numpy USE flag removed""
- * Revert "sci-chemistry/ccpn numpy USE flag removed"
- * sci-chemistry/ccpn numpy USE flag removed (Portage version: 2.2_rc23/git/Linux i686) (Unsigned Manifest commit)
- * Add patch to fix crash on startup with tcl8.5 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Re-manifest
- * Added gasgano
- * cpl: added wcs and gasgano support
- * sci-electronics/stage: add SLOT
- * sci-electronics/player: add SLOT
- * cdsclient: version bump
- * cdsclient: version bump
- * Added bug ref
- * pyglet version bump
- * Clean up
- * Clean up
- * move boinc to the tree.
- * One more CUDA fix (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * fix cuda support (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Same as previous commit but this time for normal boinc.
- * Add things noted by bicatali
- * Added ggobi
- * sys-cluster/openmpi-1.3: Don't build Vampir Trace on sparc, #256529.
- * cuda++
- * Add our bundled init script.
- * Remove bundled init scripts
- * Bit cleanup in boinc.
- * sci-chemistry/ccpn version bump to 2.0.6
- * sci-chemistry/almost added to sci overlay, bug 248455 (Portage version: 2.2_rc23/git/Linux i686) (Unsigned Manifest commit)
- * sci-chemistry/pdb-extract-3.004.ebuild added for testing pending bug is 249933
- * sci-chemistry/azara and sci-chemistry/ccpn added to overlay
- * uncommited files
- * Patch to fix when using libtool-2.2+, #228183. Also remove sweep to avoid file conflict with media-libs/sweep, #245439 c2.
- * First pass for boinc, NOTE: install is not done yet :]
- * Update comments.
- * Add some empty depend :]
- * More boinc updates.
- * Fix cuda stuff a bit :P
- * Forget to add correct groups :P Now should cuda really work :]
- * Update deps.
- * Update generating script to hopefuly final version.
- * matio-1.3.3 version bump
- * Ups forgot one dep.
- * Working cuda :]
- * Update script.
- * Umm. Fix breakage.
- * Remove prerelease. We wont bother.
- * More updates.
- * Moar init fixups. (Portage version: 2.2_rc20/git/Linux 2.6.27-gentoo x86_64) (Unsigned Manifest commit)
- * Update boinc-bin a bit, fixup initscript severly. (Portage version: 2.2_rc20/git/Linux 2.6.27-gentoo x86_64) (Unsigned Manifest commit)
- * Update profiles/categories/ and add generate_tarball.sh for boinc (that script is heavy WIP)
- * Update openib-osm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update openib-osm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update openib-osm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update openib-osm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update openib ebuild (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update openib ebuild (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update openib ebuild (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update openib ebuild (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update openib-files (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * update eclass
- * Update openib-files ebuild (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * eclass update
- * update
- * Add metapackage for openib (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Add new openib-perf (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Add new openib-files (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update ebuilds (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add new diags (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add new opensm (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * updaet eclass
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * add libnes (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * add driver for mlx4 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * updaet ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add new libiubmad-1.2.3_p20081118 (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Add new libibmad-1.2.3_p20081118 (Portage version: 2.2_rc23/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
- * Update libibcommon ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add new libibcommon-1.1.2_20082010 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update eclass
- * Add new libibcm-1.0.4 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add new libehca-1.2.1 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update dapl ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update librdmacm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update libibverbs ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Unmask for testing
- * Update libibverbs ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update librdmacm ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update compat-dapl ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update dapl ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add librdmacm metapackage (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update dapl ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add libibverbs metapackage (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Add libibverbs metapackage (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update dapl ebuild (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * add to pmask
- * Add dapl compatibility layer (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * fix headers and ebuild to work with eclass (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Update ebuild according to eclass (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * update eclass a bit
- * fix openib eclass
- * add p.mask entry
- * add experimental ebuild for dapl-2.0.15 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci
- * sys-cluster/mpich-1.0.8 bugfixes, no revbump. Fix some doc file locations (#255748). Fix sandbox errors (254167).
- * fix typo
- * add new openib eclass
- * Add empty package.mask, for use by broken/in-development/9999 packages.
- * Slightly update the previous commit.
- * Fix bug 243194. Update init so it uses CFS. Hope it wont harm kittens looks fine now.
- * Whitespacie notes.
- * Update slightly initscript. Note: it (as whole) needs review
- * Fix bug 137224. Wrong attach usage. Note: i will close it and when this boinc versions are passed to the tree it will be just updated.
- * add boinc-bin. Cuda not created there is library ${S}/libcudart.so which needs to be placed somewhere. So somebody with nvidia, tweak yourself up :P
- * Drop smp use flag since its defautl for openmpi (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * fix syntax
- * initial version bump to 1.3 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Make it work with current libtool (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * We dont want static gromacs by default (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Fix headers (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Fix headers (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Fix syntax issues (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Fix syntax issues (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * Bump gromacs to 4.0.3 (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * fix keywords and hader for gtk-gamess (Portage version: 2.2_rc23/git/Linux x86_64) (Unsigned Manifest commit)
- * fix manifests
- * dev-python/h5py - Bumped version to 1.0.0.
- * gap:version bump
- * Version bump
- * Added ekee
- * Update mpi.eclass. Major changes include simplyfing use and allowing non empi builds to still get some information. Also updated all related packages using this eclass.
- * Header change w/o getting the 1000s commit
- * Header change w/o getting the 1000s commit
- * Header change in ./sci-libs/cctbx/cctbx-2008.05.19.2030.ebuild
- * Header change in ./sci-libs/mmdb/mmdb-1.0.10.ebuild
- * Finite state toolkit foma. Initial ebuild.
- * Bump to OpenCascade 6.3 Needs testing...
- * version bump
- * In CVS
- * In CVS
- * http://bugs.gentoo.org/show_bug.cgi?id=251793 (Portage version: 2.2_rc17/svn/Linux 2.6.26-gentoo-r4-cdrom i686)
- * phun: version bump
- * cctbx update -- rosetta++ added from bug 250401
- * intial checkin version bump which results in broken digest of ebuild in tree (bug 247788) (Portage version: 2.2_rc17/svn/Linux 2.6.26-gentoo-r4-noata i686)
- * removing old version
- * spr: fixed data files and added use flag description
- * spr: initial import for testing
- * sci-chemistry/cara-bin Initial checking in (Portage version: 2.2_rc17/svn/Linux 2.6.26-gentoo-r4 i686)
- * CARA license added
- * esorex: version bump
- * cpl: version bump
- * sci-mathematics/freefem++: fix a P1 FE bug and examples++-load
- * Removed spooles USE-flag for sci-libs/calculix-ccx
- * sci-libs/calculix-ccx: Removed spooles USE-flag, spooles is no longer optional
- * sci-libs/gmsh: Version bump
- * rasmol: bump to latest. also added new dep, cbflib. (#238302).
- * rasmol: bump to latest. also added new dep, cbflib. (#238302).
- * Force serial build of mpich2... Ironically. #248456
- * new USE-flag 'chaco' for sci-libs/gmsh
- * sci-libs/gmsh: Fixed metis compilation problem and added chaco USE-flag
- * app-vim/freefem++-syntax: version bump.
- * sci-libs/gmsh: Improved typo
- * sci-libs/gmsh: Version bump
- * removed speedcrunch now in main tree
- * sci-geosciences/tappy-0.8.1.ebuild - Version bump
- * mosflm: bump to 7.0.4; parallel build is broken.
- * Version bump.
- * Fix 242180, comment 5 by just allocating a buffer for the string instead of trying to use PATH_MAX.
- * sci-mathematics/sage-bin: Updated Manifest
- * sci-mathematics/sage-bin: Version 3.1.2 no longer available for download. Minor change in SRC. Explicit installation of sage-* and explicit creation of /usr/bin/sage symlink.
- * Updated mpi.eclass to handle packages with blockers and mpich2
- * dev-python/h5py-0.3.1.ebuild Python interface to HDF5 files. Initial ebuild.
- * sys-cluster/mpe2 needs to handle building without empi.
- * Integrate Joel's fixes for #220877 into mpich2 (fpic ->fPIC)
- * Add empi-capable mpe2, tests pass with mpich2, some issues with openmpi
- * Add empi-capable mpich2
- * sci-misc/salome-med: Reordered dependencies
- * sci-mathematics/freefem++: gcc-4.3 and no-X11R6 symlink fixes
- * removed cgal, now in main tree
- * removed cgal-python, now in main tree
- * sci-misc/salome-kernel: Reordered dependencies
- * deleted USE-flag 'corba' for sci-misc/salome-kernel
- * sci-mathematics/mdp - Even though I couldn't reproduce the error, I updated the Manifest, per http://bugs.gentoo.org/show_bug.cgi?id=146976#c6
- * Added patch to support hdf5-1.6.7
- * Added support to VTK 5.2
- * Added support to VTK 5.2
- * Added support to VTK 5.2
- * sci-mathematics/mdp-2.4.ebuild : A Python data processing framework. Bumped to version 2.4, updated DEPEND.
- * removed plplot, now in main tree
- * removed lasi, now in main tree
- * ipython now in tree
- * Fix bug #242574, version bump and gcc-4.3 patch.
- * bump sys-cluster/openmpi-1.2.8 and clean up old version.
- * new USE flags 'arpack' and 'spooles' for sci-libs/calculix-ccx
- * sci-libs/calculix-cgx: Reworked ebuild for bug 125775, thanks to pva
- * sci-libs/calculix-ccx: Reworked ebuild for bug 125773, thanks to pva
- * sci-libs/spooles: Reworked ebuild for bug 125772, thanks to abraxxas and pva
- * sci-geosciences/swmm Initial ebuild for SWMM - Storm Water Management Model, developed by the U.S. Environmental Protection Agency and Camp, Dresser, McKee (CDM).
- * sci-mathematics/sage-bin This is the Sage binary package. Sage is very difficult to tease out the sources to build separately and so I gritted my teeth and created this binary package ebuild. See http://bugs.gentoo.org/show_bug.cgi?id=201321 for information on the conventional source based ebuild.
- * Added Manifest for ipython
- * Added ipython-0.9.1 for testing
- * Automated script commit
- * Automated script commit
- * Probably the last fix. Fixing of path in right place' (Portage version: 2.2_rc11/svn/Linux 2.6.25-gentoo-r8 i686)
- * Automated script commit
- * aribas-1.63
- * Automated script commit
- * Removed superfluous files.
- * Automated script commit
- * Added second set of octave-forge updates.
- * latest version
- * Nearly ready
- * Nearly ready
- * Automated script commit
- * Automated script commit
- * Automated script commit
- * Bump first batch of octave-forge packages to new revision.
- * Removed octave since octave-3 has been merged to the main tree.
- * Automated script commit
- * cdsclient: bump to 3.01
- * removed root, now in main tree
- * sci-misc/salome-kernel: fixed dependency
- * sci-misc/salome-kernel: Fixed typo in dependency
- * gmpy-1.03 is now in the tree
- * Bring in latest openmpi-1.2.7 with empi support. Remove old 1.2.5, cleanup repoman warnings.
- * upstream patched; redigest
- * Version bump. Patch for gcc-4.3.
- * Version bump; ensure python has tkinter
- * manifest update
- * In gentoo-x86
- * New package, bug 236954
- * sci-misc/salome-med: Added patch for >=dev-libs/boost-1.35.0
- * sci-misc/salome-kernel: Fixed version dependency
- * sci-misc/salome-kernel: Fixed version dependency
- * sci-misc/salome-superv: Fixed typo in patch file
- * sci-misc/salome-pycalculator: removed omniorb* dependencies, as they are already in salome-kernel
- * sci-misc/salome-visu: removed omniorb* dependencies, as they are already in salome-kernel
- * sci-misc/salome-superv: removed omniorb* dependencies, as they are already in salome-kernel; added omniorb_4.1.patch
- * sci-misc/salome-component: removed omniorb* and med dependencies, as they are already in salome-kernel and salome-med
- * sci-misc/salome-smesh: removed omniorb* dependencies, as they are already in salome-kernel
- * sci-misc/salome-med: removed omniorb* dependencies, as they are already in salome-kernel
- * sci-misc/salome-geom: removed omniorb* dependencies, as they are already in salome-kernel
- * sci-misc/salome-gui: Most USE-flags doesn't seem to be optional, changed default settings; added pyobject.patch
- * sci-misc/salome-kernel: Reworked USE-flags, changed default behaviour, added omniorb_4.1.patch
- * pyglet-1.1.1.ebuild: version bump
- * The GIS Django branch was merged into the trunk.
- * +Manifest
- * Initial commit for bug 221965, thanks to Marek Miller <mlm@ngc17.pl>
- * root: added better emacs support
- * dev-python/sympy is now in the main tree
- * jama: cleaning
- * tnt: version bump and fixes
- * pythia now in main tree
- * added root for test on extra patches
- * pythia6: rev bump
- * pythia6: added additional declarations for root
- * sympy-0.6.2: with docs (using sphinx), mpmath and pyglet are internal so far
- * Added USE-flags for the sci-misc/salome-* ebuilds
- * sci-misc/salome-smesh: Now really removed fetch restriction
- * sci-misc/salome-visu: Removed fetch restriction, removed hardcode
- * sci-misc/salome-superv: Removed fetch restriction, removed hardcode
- * sci-misc/salome-smesh: Removed fetch restriction, removed hardcode
- * sci-misc/salome-pycalculator: Removed fetch restriction, removed hardcode
- * sci-misc/salome-meta: Fixed repoman errors, removed hardcode
- * sci-misc/salome-med: Removed fetch restriction, removed hardcode
- * sci-misc/salome-gui: Removed fetch restriction, removed hardcode
- * sci-misc/salome-geom: Removed fetch restriction, removed hardcode
- * sci-misc/salome-component: Removed fetch restriction, removed hardcode
- * sci-mathematics/netgen: Fixed dependency for opencascade
- * Added corba and openpbs USE-flags for sci-misc/salome-kernel
- * sci-misc/salome-kernel: Removed fetch restriction, added python-2.5 support, removed hardcode
- * Added cgns, metis and opencascade USE-flags for sci-libs/gmsh
- * sci-libs/cgnstools: New Ebuild for bug 176455
- * sci-libs/cgnslib: New Ebuild for bug 176455
- * sci-libs/gmsh: New Ebuild for bug 195980
- * gmpy-1.03: an update to the package in the main tree
- * pyglet-1.1: version bump
- * avbin-bin-6: version bump
- * sci-libs/mathgl-1.7.ebuild *1.7 version based on 1.6.2. *Removed unneeded patches and 'sed' commands, updated SRC_URI, added append-flags for CPPFLAGS and LDFLAGS.
- * pythia-8: install data files
- * sci-visualization/scidavis-0.1.3.ebuild - Changed two lines indented with spaces to indented with tabs.
- * sci-visualization/nodemon-0.3.5.ebuild - Changed description to < 100 characters and updated copyright date.
- * sci-misc/brlcad-7.10.4.ebuild - Removed BSD license which was for the BRLCAD wiki content and updated copyright year.
- * sci-misc/simpy-1.9.1.ebuild - Initial ebuild for simpy, a process and event simulation system for Python.
- * sci-geosciences/congen-1.6.ebuild - Congen calculates astronomic parameters necessary to analyse tides.
- * ccp4: split out ccp4i into separate package.
- * ccp4: split out ccp4i into separate package.
- * coot: require librsvg (reported by Hari Jarayam).
- * coot: also needs imlib.m4 or it fails on systems without imlib-1.
- * app-office/texmacs is in the main tree
- * Moved to portage
- * Remove sys-cluster/ganglia as it's in the main tree.
- * Fixed Manifests
- * ccp4: pull in balbes-db.
- * Add balbes-db, split out from ccp4.
- * ccp4: pull in standalone xia2.
- * Add split-out xia2 ebuild.
- * refmac: install refmac5 symlink.
- * ccp4: more fixes.
- * ccp4: pull in standalone refmac.
- * Add standalone refmac.
- * ccp4: pull in imosflm.
- * ccp4: pull in standalone mosflm.
- * New package: standalone mosflm.
- * ccp4: initial version that depends on ccp4-libs.
- * Move ccp4-libs to sci-libs.
- * ccp4: add imosflm deps. fix quoting syntax error.
- * tktreectrl: dep for new ccp4, from bug #217706.
- * Use category in has_version, thanks to filko on #-science for pointing it out.
- * Add ganglia-3.1.0. Python is not fully working yet, but everything else checks out.
- * ccp4: bump to 6.0.99e, alpha ebuild.
- * added ~x86
- * minor fixes to symmetrica and cddlib
- * Added givaro
- * Added Symmetrica
- * Added dev-libs/ntl-5.4.2
- * minor change to gdmodule
- * added fplll
- * added m4ri
- * added gdmodule
- * added cddlib
- * sci-mathematics/mdp * Added ~x86 per http://bugs.gentoo.org/show_bug.cgi?id=146976
- * sci-mathematics/mdp * Initial ebuild
- * coot: bump to 0.5_pre1-r1272.
- * coot: Bump to 0.5_pre1-r1212, drop 0.4.1.
- * Added pythia (6 and 8)
- * gap-4.4.10: sysinfo.gap now installed
- * removed libsdp-1.1.ebuild added libsdp-1.1.99.ebuild
- * added libehca-1.2.ebuild removed libehca-1.1.ebuild
- * manifest
- * taking patch away
- * svn housekeeping
- * fix patch name
- * Added surfer
- * In the portage tree
- * pyglet-1.1_beta2
- * sci-mathematics/pest * Added '-j1' to MAKEOPTS to force correct compile order.
- * bump as openmpi-1.2.6-r1 just hit the tree.
- * sci-geosciences/pyslice * Added ~x86
- * sci-geosciences/tappy * Added ~x86 as per https://bugs.gentoo.org/show_bug.cgi?id=138005#c8
- * sci-geosciences/geodjango-svn * Added ~x86 per https://bugs.gentoo.org/show_bug.cgi?id=230880#c4
- * Version bump
- * fix digest
- * version bump
- * New package, bug 207250
- * New license for sci-biology/mavid
- * New package, bug 114089
- * sys-cluster/hpl * Minor repoman edits.
- * sys-cluster/pyslice * Initial ebuild entry.
- * sci-geosciences/tappy * Added correct header.
- * sys-cluster/blcr * Minor repoman edits.
- * sci-geosciences/tappy * Initial ebuild.
- * sci-geosciences/geodjango-svn * Initial import of GeoDjango branch.
- * sci-geosciences/xtide * Added ~x86 per https://bugs.gentoo.org/show_bug.cgi?id=214868#c9
- * manifest
- * compressing the patch
- * Updated the gcc-4.3 patch for salome-kernel (Thanks Bart K.)
- * sci-geosciences/libtcd * Added ~x86 per http://bugs.gentoo.org/show_bug.cgi?id=214867#c4
- * sci-geosciences/harmonics-dwf-free-noncomm * Added ~x86 per http://bugs.gentoo.org/show_bug.cgi?id=214873#c4
- * sci-geosciences/tcd-utils * Added ~x86 per http://bugs.gentoo.org/show_bug.cgi?id=214875#c4
- * sci-geosciences/xtide * Added required dependencies to fix http://bugs.gentoo.org/show_bug.cgi?id=214868#c4
- * patches
- * Import for testing
- * add metadata.xml
- * Add changelog, and thanks to Jose Maria Fernandez Gonzalez
- * Initial import.
- * adding local variables myconf_s and myconf_d to keep track of flags
- * fixing cases when all you want is double-precision, thanks to Shvetsov Alexey on bug #193532
- * guile-lib: bump to 0.1.6.
- * scamp:version bump and fixes
- * coot: Bump to 0.5_pre1-r1192.
- * openmotif, not motif
- * openmotif, not motif
- * openmotif, not motif
- * switch virtual/motif to x11-libs/openmotif for bug #204249.
- * switch virtual/motif to x11-libs/openmotif for bug #204249.
- * switch virtual/motif to x11-libs/openmotif for bug #204249.
- * new cluster, make license file
- * note in license file this is for sci-biology/cluster
- * License for sci-biology/cluster
- * Remove opencv from overlay, it's now in gentoo-x86
- * Made media-libs/lasi ebuild adhere to multilib-strict.
- * sci-chemistry/drawxtl: * Added metadata.xml
- * sci-calculators/speedcrunch: * Added metadata.xml
- * sci-astronomy/scamp: Simple repoman inspired edit * Changed copyright date
- * dev-lang/aldor: Simple repoman inspired edits * Updated copyright dates * Removed unneeded 'cd "${S}"'
- * dev-cpp/growler: Simple repoman inspired edits * Changed copyright dates * Shortened long DESCRIPTIONs to under 100 characters * Fixed svn Headers
- * app-office/texmacs: Simple repoman edit * Added trailing semicolon in files/TeXmacs.desktop
- * eselect-mpi: Simple repoman guided edits. * Deleted trailing spaces * Quote variables * Added metadata.xml
- * Update description
- * add manifest
- * New package
- * In gentoo-x86
- * Final fixes before eclass goes out for review.
- * Latest gromacs for testing
- * fix Manifest
- * fix headers and utf
- * added libsfmt and libdsfmt
- * Remove unnecessary RESTRICT, keyword for x86 since pchrist tested it
- * Bump eselect-mpi-0.0.4. Adds /etc/profile.d support. Thanks to Bryan Green for suggesting this.
- * Fix step 6 in the README, paths were wrong. Thanks again to Bryan Green.
- * Fix a couple of bad csh environment var settings. Thanks to Bryan Green for pointing this out, #226105
- * Actually bump empi correctly.
- * And add a missing patch, forgot to 'svn add'
- * Fix ffmpeg linking with sws_getContext by adding -lswscale to FFMPEGLIBS, and fix up ffmpeg's configure checks as well
- * Add demos USE flag for sample opencv applications, change to a better format(unified) for the cvcapffmpeg patch
- * Add demos local USE flag description for opencv
- * Fixxor AC_CONFIG_MACRO_DIR conflicts with ACLOCAL_AMFLAGS
- * repoman fixups
- * git-svn-id: svn+ssh://svn.j-schmitz.net/svn/portage-overlay/ebuilds@413 848b6a78-a7b0-4e08-a36b-699b422dbac5
- * Initial import, bug #70506
- * removed clhep, now in main tree
- * removed geant, now in main tree
- * removed dawn, now in main tree
- * added openib.env per bug #223955 comment #17
- * updates to several openib packages
- * Final cleanup.
- * added ebuilds for OFED/openib 1.2.5.5
- * fixed doc install
- * added speedcrunch
- * Added patch to fix stdout problem in chi2rnd function.
- * esorex: bump to 3.6.8
- * cpl: version bump to 4.1
- * geant: patch bump
- * More cleanups.
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Corrected a minor bug
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added Gcc-4.3 support. Thanks to Bert K. for his patches!
- * Added the license file for OpenCascade. Corrected issues with the configuration of OpenCascade (Thanks Richard W.!)
- * More manifest fixing
- * fixing manifests and ebuild name
- * new package: libibvpp
- * Major ebuild cleanup. Disabled failing tests and added patched from debian svn.
- * pyglet-1.1_beta1
- * avbin-bin-3 (needed by pyglet)
- * added openib-mvapich2-1.0.1-r1 to MPI_EMPI_COMPAT
- * minor fix, added use of ${mpi_conf_args}
- * added openib-mvapich2 to MPI_ALL_IMPS
- * added ~x86 keyword, updated copyright dates
- * added openib-mvapich2-1.0.1-r1.ebuild, added ~x86 keyword
- * Initial import, thanks to Jan Marten Simons, Hannes Kruger, and Srebrodolskite.
- * add menu entry
- * Remove quotes
- * Cleanup and add ApE license file.
- * Initial import.
- * In gentoo-x86
- * Compilation and installation now properly takes place in src_compile and src_install. Also, make the compile and install phases more verbose.
- * git-svn-id: svn+ssh://svn.j-schmitz.net/svn/portage-overlay/ebuilds@406 848b6a78-a7b0-4e08-a36b-699b422dbac5
- * asciidata: version bump
- * visual-4_beta26 now in main tree
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Modified a minor bug regarding the location of some python/salome shared directory
- * gle is in the main tree now
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * scidavis-0.1.3: translations are now handled correctly
- * Added new octave-forge packages.
- * Heavy rework of the ebuild and the associated epatches. WARNING: At the moment, OpenCascade support is broken (at least on amd64)
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Corrected a minor issue (the icon reference)
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Initial update. There is still some work to do but it starts to get shape! ;) See bug #155974
- * Added ~x86 in the KEYWORDS list. I tested it, it seems to work correctly.
- * Initial import. See bug #130502 for more info
- * Bug correction. Thank you Dewald for testing and showing me how to solve it.
- * scidavis-0.1.3
- * qtiplot-0.9.6 is now in the main tree
- * Initial import of xtide. A tidal prediction program that has graphical interfaces and a web server.
- * Utilities for the creation and restoration of Tidal Constituent Database files.
- * Initial import of an ebuild for and graphical editor of Tidal Constituent Database files.
- * Initial import of libtcd, a library for the editing of Tidal Constituent Database files.
- * Initial import of Tidal Constituent Database. Dependency of other tide related programs (libtcd, tcd-editor, tcd-utils, xtide).
- * Initial import of Tide Constituent Database ebuilds. Dependency of several tide related programs (libtcd, tcd-editor, tcd-utils, and xtide).
- * Added sci-geosciences to add new ebuilds.
- * Initial ebuild for the PEST model calibration, Parameter ESTimation, and uncertainty analysis tool.
- * qwt-5.1.0: in the main tree
- * qtiplot-0.9.6: dependencies corrected
- * Committed new versions for octave-forge packages.
- * bump to empi-0.4 fixing issue with directories in portage_confdir, reported by Radice David
- * qtiplot-0.9.6
- * qwt-5.1.0
- * Added librdmacm-1.0.7.ebuild
- * Fixed recursive dohtml (see bug #221905) in sci-libs/lapackpp.
- * mmtk: bump to 2.5.23.
- * Updated to netgen-4.4-r1
- * Bump to opencascade-6.2-r1
- * OpenCascade belongs to sci-libs, not sci-misc. OpenCascade being fundamentally a library....
- * OpenCascade belongs to sci-libs, not sci-misc. OpenCascade being fundamentally a library....
- * My first contrib on the science overlay is a library for DICOM files (Digital Imaging and COmmunications in Medecine)
- * mathgl-1.6.2, udav-0.3.2: ~ppc added
- * udav-0.3.2: several improvements
- * mathgl-1.6.2: several improvements
- * Bump to new versions.
- * Added compatibility with new imagemagick to octave-forge-image.
- * added libibverbs-1.2.2.ebuild
- * keyworded amd64
- * keyworded amd64
- * freefem++ version bump, added freefem++-syntax
- * Upstream changed tarballs again
- * coot: bump to 0.5_pre1-r87, add gcc 4.3 patch.
- * extrema is now in the main tree
- * maxima-5.15.0 and wxmaxima-0.7.5 are in the main tree
- * udav-0.3.2: cleanup
- * mathgl-1.6.2 cleanup and improvements
- * Don't spit out errors if people aren't using empi
- * udav-0.3.2: Universal Data Array Visualization
- * mathgl-1.6.2: Math Graphics Library
- * maxima-5.15.0 and related stuff
- * Call eautoreconf in every required directory by hand as AC_CONFIG_SUBDIRS isn't uses and autotools.eclass can't find everything.
- * Fix for gcc-4.3.0. Change 'char * argv[]' to 'char **argv' in configure scripts. Thanks to Peter Alfredsen (peter.alfredsen at gmail) for the fix.
- * Version bump.
- * added phun
- * plplot: more use flags dep checking
- * empi, add x86. Thanks to Shvetsov Alexey (alexxyum at gmail) for testing.
- * eselect-mpi, add x86. Thanks to Shvetsov Alexey (alexxyum at gmail) for testing.
- * bump openmpi to 1.2.6. Thanks to Shvetsov Alexey (alexxyum at gmail) for the note.
- * Fixed incorrect package descriptions.
- * geant4: fixed a wrong sed command
- * checksum change
- * geant4: fixed syntax
- * geant4: new ebuild with exports
- * point {do,new}bin to correct functions
- * add missing mpi.eselect-0.0.3
- * removed skycat now in main tree
- * removed tkimg, now in main tree
- * added slotted geant-3, data dir is now /usr/share/geant-4/data for geant-4
- * geant4: fix a bad env name and removed and extra fi in the no-source patch
- * Changelog
- * fixing license
- * Add license for sci-chemistry/modeller
- * Initial import, added MY_PV, thanks to the prolific Justin Schmitz
- * readded geant
- * removed geant4
- * geant-4: fixed data installation
- * added geant-4
- * added dawn
- * plplot: more fixes on use flags and fortran
- * plplot: add missing use, more fortran fixes
- * Initial import, openFST finite state transducer toolkit
- * Bump eselect-mpi. Fix mpi.eclass so it correctly reports the mpi_dir when building implementations via empi.
- * removed mkl, now in main tree
- * cdsclient: bump
- * removed parmetis, now in main tree
- * imported lasi
- * Add digest for blcr changelog too.
- * Initial import of blcr. Thanks to kuffs (Aaron Tygart) for the ebuild.
- * bump empi-0.3. See ChangeLog for details.
- * visual-4_beta26
- * Don't use eselect-mpi in get_mpi_dir if empi is not being used
- * octave-forge.eclass now uses octave's pkg.m for compiling packages.
- * coot: bump to 0.5_pre1-r875.
- * gle-4.1.2b
- * yorick-2.1.05: DEPEND corrected
- * texmacs-1.0.6.14
- * breqn-0.97a
- * mkl: more polishing
- * yorick-2.1.05
- * Added patch to have 'pkg install' exit with error code if it can't find the source tarball.
- * moved overlay to new directory
- * coot: keyword ~amd64
- * mmtk: Bump to 2.5.22
- * ccp4: revbump with new upstream patches and Gentoo build fixes.
- * Update coot to 0.4.1.
- * Drop unneeded packages and packages that exist in other repos.
- * move stuff to root
- * deleted ifc and icc, now in main tree
- * qtiplot-0.9 Depends on x11-libs/qwtplot3d built with qt-4 (bug #184652)!!!
- * freemat in main tree
- * harminv: fixed autotools
- * freemat-3.5
- * octave-2.9.14 (seems to work fine on my x86 without any patches)
- * metis: fixed autotools patch and license
- * fixed cxsparse autotools patch
- * added cholmod and metis
- * revert acml
- * revert acml
- * acml manifest fix
- * extrema-4.2.8
- * added: colamd ccolamd cxsparse camd
- * removed blas-goto, updated in main tree
- * added gsl-1.10 with cblas support
- * *-atlas: set default fortran flags
- * cleaning license and use flag
- * removed cmt, now in main tree
- * sci-mathematics/gretl: Fixed for lapack settings, removed tetex.
- * removed maxima, now in main tree
- * boa-constructor-0.6.1
- * lapack-atlas: fixed clapack error
- * sci-biology/sibsim4: version bump
- * sci-biology/gmap: version bump
- * removed cfitsio, now in main tree
- * texmacs-1.0.6.11
- * icc/ifc: few fixes with envd files
- * delete numeric, now in main tree
- * numeric: fix for 2.5
- * ifc/icc: added rootpath in env files
- * mkl: swap restrict fetch and mirror
- * icc: added emul-linux-compat-x86
- * maxima-5.13.0 and texmacs-1.0.6.10-r1 with a patch to run maxima-5.13.0
- * added icc-10
- * added ifc-10
- * cleaning
- * Added ipp
- * cleaning
- * removed root, geant, cernlib, cernlib-montecarlo, paw, now in main tree
- * cleaning
- * cleaning
- * removed xbae, now in main tree
- * removed numdisplay, now in main tree
- * extrema-4.2.7: added ~amd64
- * removed gdl, now in main tree
- * extrema-4.2.7: data analysis and visualization
- * removed gsl, now in main tree
- * removed blas,cblas,lapack-reference, now in main tree
- * lapackpp update
- * lapackpp cleanup
- * lapackpp: initial import
- * {blas,lapack}-atlas: updated patch
- * mkl: re-fix access violation and a comment
- * mkl: lapack.pc fix
- * mkl update
- * updated virtual with deps
- * atlas: fixed bug
- * mkl update
- * blas/lapack pkg-config file update
- * fixed *.pc.in to work on x86
- * added many updates to blas/lapack packages
- * added new virtual blas, cblas and lapack
- * cernlib.eclass: cleanup
- * removed libctl, now in main tree
- * removed pygsl, now in main tree
- * removed muParser update, now in main tree
- * Whoops! inherit autotools
- * Fix typos
- * Remove LICENSE until I have time to fix it.
- * Initial import of cluster-1.36 thanks to Favero Francesco
- * sci-physics/root: root: fixed Manifest
- * Merged many things to gentoo-x86, mostly coot-related
- * sci-astronomy/sextractor: filter optim flags
- * removed ds9, now in main tree
- * dev-lang/gdl: gdl: fftw>=3
- * sci-astronomy/scamp: cleaning
- * sci-astronomy/scamp: Version bump
- * removed freemat, now in main tree
- * dev-cpp/muParser: Version bump
- * sci-astronomy/ds9: Version bump
- * sci-astronomy/swarp: swarp: version bump
- * dev-lang/gdl: added ChangeLog
- * dev-lang/gdl: gdl: version update
- * dev-python/pygsl: pygsl: version bump
- * sci-physics/bullet: bullet version bump
- * sci-physics/root: root:added patch release
- * sci-physics/root: root: fixed CC -> CXX
- * sci-physics/root: root: added truetype option, fixed intel and fortran compilers support
- * cernlib.eclass cleanup
- * sci-physics/cernlib: cernlib: fixed an ifc problem
- * sci-physics/cernlib: cernlib:updated patch
- * sci-physics/root: Version bump
- * added makedepend dep on cernlib.eclass
- * Making gtk-gamess ~amd64 only until I can fix up gamess to include the amd64 arch.
- * Removing, as ghemical is now in the main tree.
- * Removing as it's now in the tree.
- * Removed apbs, as it made it into portage and was causing confusion.
- * coot: pull guile 1.8 patch from upstream instead of our custom one.
- * coot: fix build with guile 1.8 / gmp 4.2.1
- * Changed to use markusle's octave ebuild.
- * Deleted jmol as it's now in the tree.
- * Replacing octave-2.9.12.ebuild with markusle's ebuild.
- * Removing keywords.
- * Fixing manifest.
- * Bumping to octave-2.9.12
- * add bullet
- * Removed pymol as it's now in the main tree.
- * Testing pymol-0.99_rc10.
- * Coot: delete old snapshot, newer version's in portage.
- * Add burrow-owl NMR package, and its new guile deps, bumps and patches.
- * Fixed a typo in jmol.
- * paw: version bump
- * added root digest
- * root: version bump
- * Fix jmol digest
- * sci-chemistry/jmol: changed to use sci-libs/jmol-acme
- * More java cleanup thanks to nichoj.
- * Depend on saxon-6.5 to generate documentation.
- * sci-biology/gmap: upstream re-rolled tarball due to single bug, updating digests
- * sci-biology/gmap: version bump
- * sci-physics/root: root: mit-krb5 -> virtual/krb5
- * sci-mathematics/gretl: gretl:initial import
- * dev-python/numeric: dev-python/numeric: various new patches to work with python 2.5
- * More cleanup...
- * Cleanup and get ready for portage migration.
- * Removing from overlay as it's now it portage. Getting ready to introduce JMol.
- * Removing from here as it's in portage. Getting ready to introduce JMol.
- * geant: debian patches update
- * paw: fixed back to older debian cernlib
- * sci-astronomy/scamp: scamp: version bump
- * More appropriate file name for vecmath-objectclub.
- * Took out the symlink to plugin.jar.
- * Emptied KEYWORDS temporarily.
- * Fixed all jars except for netscape.jar. Ugly hack used. :(
- * Initial import.
- * Initial import...comments welcome :D
- * Adjusted $ARCH
- * Moved jmol-acme as it fits better in sci-libs.
- * Argh!
- * Re-adding jmol-acme.
- * Moving from sci-chemistry to sci-libs,
- * More cleanup
- * Fixing DEPEND
- * Adding KEYWORDS
- * Tidy up a bit.
- * Improved the 11.0 build and removed 10.2
- * Adding -sourcepath "" as per Caster's suggestion.
- * Initial import.
- * The patch has been applied upstream (without changing the version number)
- * texmacs-1.0.6.10
- * Manifest corrected
- * sci-physics/root: bumped root from main tree with cernlib compatibility
- * an attempt to solve the problem that /usr/share/maxima/5.12.0/doc/html/ is created twice on some systems
- * added use local flag hdf5 for meep
- * sci-physics/meep: added meep
- * sci-physics/harminv: harminv: enabled shared library
- * sci-libs/libctl: added libctl
- * sci-physics/harminv: added harminv
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@597 32389bae-6d03-0410-99cf-db05cde120eb
- * sci-libs/cfitsio: Version bump
- * Added a check that, if guile is 1.8, it is emerged with +deprecated
- * Please don't leave inconsistent Manifest files in the tree!
- * fixed for new debian directory structure
- * texmacs-1.0.6.9-r1: support for maxima-5.12.0
- * maxima-5.12.0
- * Moved ebuild to portage.
- * Getting rid of pymol since it's in the tree now...
- * cernlib: version bump+cleaning
- * qcl version bump and added amd64 for testing
- * pygsl version bump. added src_test
- * added muparser
- * sci-biology/blat: version bump!
- * Updated ChangeLog.
- * Added ~amd64.
- * Add changelog thanking hodak at ncsu.
- * Importing pymol-0.99_rc8.
- * Adding svn pymol build.
- * add metatadata.xmls for all these poor souls
- * Mass import from sunrise
- * new use flag for sci-biology import
- * new licenses for sci-biology
- * new license gmap for sci-biology/gmap
- * rkward now in main tree
- * qwt was moved in main tree
- * Manifest update.
- * removed paraview, now in main tree
- * vtk now in main tree
- * mayavi-1.5 now in main tree
- * minor cleanup
- * jdk dep for vtk
- * added mayavi
- * added paraview
- * vtk suite
- * added new vtk
- * liborigin now in main tree
- * sci-astronomy/sextractor: sextractor: cleanup
- * sci-astronomy/ds9: ds9: version bump
- * aldor-1.1.0_rc
- * sci-astronomy/skymaker: Initial import of skymaker
- * sci-mathematics/rkward: rkward: version bump
- * sci-mathematics/freemat: freemat: added post_install function
- * sci-mathematics/freemat: freemat version bump
- * maxima changes now in main tree
- * removed obsolete itpp
- * dev-util/cmt: Version bump
- * final cernlib cleaning
- * fixed keywording for cernlib eclass
- * fixed keywording for cernlib packages
- * cernlib now uses the cernlib.eclass
- * added cernlib eclass
- * fixed for type -P/which
- * deleted geant321
- * sci-physics/geant: geant: version cleaning and update
- * sci-physics/cernlib: cleaning cernlib
- * sci-physics/cernlib-montecarlo: cleaning cernlib-montecarlo
- * sci-physics/paw: version adapted for cernlib-2006 paw new revision for cernlib-2006
- * x11-libs/xbae: initial import
- * sci-physics/cernlib-montecarlo: cleaning
- * sci-physics/cernlib-montecarlo: version bump version bump
- * sci-physics/cernlib: changelog commit
- * sci-physics/cernlib: version bump
- * cleaning old versions of cernlib packages
- * sci-mathematics/maxima: maxima: added latex stuff from bug #169178.
- * dev-tcltk/tkimg: cleaning tkimg
- * sci-astronomy/swarp: cleaning swarp
- * sci-astronomy/skycat: cleaning skycat
- * sci-astronomy/stiff: cleaning
- * sci-astronomy/sextractor: cleaning
- * sci-astronomy/esorex: cleaning esorex
- * sci-astronomy/scamp: scamp version bump
- * esorex version bump
- * cpl version bump
- * bumped cdsclient
- * cleaning
- * removed arpack, now in main tree
- * rkward: fixed rdeopend
- * kayali version bump
- * rkward version bump
- * cleaning
- * removed pspp from overlay, now in main tree
- * Changed ARCH for jmol temporarily.
- * removed pgplot, now in main tree
- * Initial import of gromacs.
- * Initial import...jmol-11.0.ebuild is NOT working yet...
- * cleaning maxima, a few fixes
- * Fix guile dep as per b.g.o bug 169488.
- * removed root, now in main tree
- * freemat-3.0
- * cleanup
- * fixed cfitsio
- * root-5.14 fixes
- * removed basemap, now in main tree
- * added an updated version of root
- * finalize apbs-0.5.0 cleanup
- * cleaning Manifest and digests
- * removed minuit, now in main tree
- * removed root, now in portage
- * removed hippodraw, now in portage
- * Fixing apbs-0.5.0
- * Fixing apbs-0.5.0
- * removed wxmaxima, now in main tree
- * removed imaxima, now in main tree
- * removed qfits, now in main tree
- * cleanup bogus patches
- * removing umfpack now in main tree
- * removing scipy, now in main tree
- * asymptote is now in the main portage tree
- * aldor-1.0.3 (binary, x86 only)
- * aldor-1.0.3 (binary, x86 only)
- * TeXmacs-1.0.6.9
- * removed matplotlib (now in main tree)
- * cleaning scipy
- * removed numeric, now in main tree
- * removed cfortran, now in main tree
- * removed blas-docs and lapack-docs, now in main tree
- * cleaned matplotlib
- * removed pyfits (in main tree)
- * removed numarray (in main tree)
- * Initial apbs import.
- * removed numpy (in main tree)
- * removed libafterimage, now in main tree
- * removed wcstools (in main tree)
- * removed celestia (in main tree)
- * TeXmacs-1.0.6.8-src.tar.gz has silently changed at ftp.texmacs.org
- * asymptote-1.20: a fix in DEPEND
- * maxima-5.11.0-r1: now depends on x11-misc/xdg-utils, sbcl-disable-debugger.patch dropped
- * asymptote-1.20
- * TeXmacs-1.0.6.8
- * Use science for repo_name
- * Adding categories and repo_name to profiles following glep 42 and reminded by dev-zero
- * Whoops, putting mopac7 back :)
- * Remove mopac7 from IUSE.
- * Removed mopac7 USE flag.
- * Add gtk-gamess to RDEPEND.
- * Changed help browser to allow seamonkey or firefox.
- * add ~amd64 to texmacs-1.0.6.7
- * Fix for bug 162154.
- * Corrected SRC_URI.
- * Adding the forgotten metadata file.
- * Initial cgal-python import
- * initial import of the CGAL library
- * Add dependency to RDEPEND.
- * Initial import of ghemical-2.10 into sci overlay.
- * Initial import of gtk-gamess.
- * Bump coot to latest prerelease.
- * added basemap
- * agg removed, now in main tree
- * hippodraw version 1.19.1 update
- * hippodraw version 1.19.1 update
- * removed scigraphica, now in main tree
- * root-5.14.00 version update
- * pspp cleaning
- * wxmaxima version bump
- * umfpack version update
- * qfits manifest
- * minuit version bump
- * cleaning skycat
- * cleaning swarp
- * cleaning stiff
- * cleaning scamp
- * cleaning ds9
- * cleaning esorex
- * cleaning cpl
- * cleaning sextractor
- * wcstools-3.6.6 version bump
- * removed icc flag, too buggy
- * tclx now in main tree
- * fixed some changelogs
- * added asciidata
- * cfortran: minor patch update
- * imaxima version bump
- * maxima-5.11.0: version bump
- * texmacs-1.0.6.7: version bump
- * cfitsio-3.030 update
- * Add dev version of mmtk. PyMol plugins for it are available on the homepage.
- * Add coot snapshots.
- * fixed numpy changelog
- * scipy version bump
- * numpy version bump
- * numpy: fixed lapack flag
- * gle-4.0.12 with lots of new stuff (Qt4 GUI, etc.)
- * dev-utils/cmt version bump to 1.19
- * sci-libs/cfitsio version bump and cleaning
- * asymptote-1.18: imported from bug 82871, with a fix for sandbox violation
- * freemat-2.0: now builds with recent umfpack ebuilds
- * qtiplot-0.8.8 depends on liborigin and qwt-5 (with USE=qt3); for now, emerge it with USE=-python
- * qwt5: USE=qt3 builds a qt3-version needed for qtiplot
- * muParser ebuild removed - now in the mainline tree
- * a fix for muParser
- * moving muParser, part 2
- * moving muParser to dev-cpp
- * Comment about rlwrap corrected
- * matplotlib-0.87.7: version update
- * added numpy-1.0
- * cfortran: some cleanup
- * imaxima: removed version in tree
- * tclx-8.4: minor fixes
- * remove SLOT and made sed statement more readable.
- * misc cleanup and beautification
- * fixed metadata.xml
- * misc cleanup and beautification
- * Fixes per bug #138619
- * Initial import of jmol.
- * Minor fix to comment.
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@394 32389bae-6d03-0410-99cf-db05cde120eb
- * OPJFile.h is now installed
- * An improved liborigin ebuild by George Shapovalov
- * added OpenIB-related USE-flags
- * Initial import for OpenIB-/OFED-1.1
- * Updated for 1.1 release of openib/OFED
- * root-5.12: only use fortran when cern is selected
- * hippodraw-1.19.0 version bump
- * removed scientificpython, now in main tree
- * removed orsa, now in main tree
- * coot: merged to gentoo-x86
- * ds9: fixed a typo and cflags
- * tree cleaning: manifest, metadata, old versions.
- * added esorex
- * added cpl
- * added qfits
- * scamp, sextractor, stiff, swarp: removed flag filtering + cleaning
- * root-5.12.00e-r1: fixes for asimage, xrootd and qt3
- * hippodraw: cleanup
- * hippodraw-1.18.6 version bump. updated license.
- * geant321: removed ifc support for now
- * paw-2.14.04-r1.ebuild: updated patches
- * cernlib-montecarlo-2005-r1: updated patches
- * cernlib-2005-r1: updated patches
- * added umfpack use flag
- * celestia: added cairo flag + fixes
- * fixed deps for x11 modular
- * oops
- * wxmaxima-0.70a: version bump
- * pspp: updated plotutils flag
- * scipy: removed ppc (because of umfpack)
- * arpack: clean up
- * deleted mkl (now in main tree)
- * cfitsio: depends on cfortran (better between arches)
- * ds9-4.0_beta10: updated version and patches.
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@360 32389bae-6d03-0410-99cf-db05cde120eb
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@359 32389bae-6d03-0410-99cf-db05cde120eb
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@358 32389bae-6d03-0410-99cf-db05cde120eb
- * git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@357 32389bae-6d03-0410-99cf-db05cde120eb
- * scamp-1.2.11: added eselect deps.
- * scamp-1.2.11: added warning if atlas is not selected
- * orsa: added metadata.xml
- * added wcstools-3.6.5
- * imaxima-0.95 version bump
- * cmt-1.18.20061003: version bump
- * tclx-8.4: removed amd64 bad bit
- * scientificpython: bumped stable 2.6
- * matplotlib-0.87.6: proper commit this time
- * numeric-24.2-r2: fixed lapack, added a math patch
- * numarray-1.5.2-r1: fixed lapack stuff
- * pygsl: updated gsl min version
- * matplotlib-0.87.6: version bump
- * added: liborigin-20060616
- * added: muparser-1.25
- * matio: minor cleanup
- * wxmaxima/Manifest fixed
- * Updated ChangeLog
- * -libibverbs-1.0.9999.ebuild, -libibverbs-1.1.9999.ebuild
- * Initial import
- * hippodraw-1.18.3: added an addwrite for qt settings
- * scipy-0.5.1-r1: fix a PIC for non-x86 arches
- * umfpack-5.0.1: fixed an missing include file
- * sync scipy with main tree, add one with umfpack
- * redigesting
- * added use flags for hippodraw
- * deleted packages bumped in main tree
- * added hippodraw-1.18.3
- * readded minuit + version update to 5.12.00
- * wxmaxima-0.7.0 is for the new maxima-5.10.0
- * maxima-5.10.0: a major new version
- * added cern use flag
- * added numpy-1.0_rc1.ebuild
- * matplotlib-0.87.5: removed ppc keywods (agg untested)
- * scientificpython, cmt: changed license to CeCill-2
- * Changed CeCiLL license, added agg use flag
- * numarray-1.5.2.ebuild: fixed lapack and fortran deps
- * umfpack: added a warning about upgrading. Is there a better solution??
- * matio-1.3.1: version bump
- * qcl ebuild now honours the user's $CXXFLAGS
- * added a working celestia-1.4.1-r1
- * added plplot use flag
- * added sci-astronomy/scamp
- * added sci-astronomy/cdsclient
- * added sci-astronomy/stiff
- * removed swarp-2.15.7, cleaning
- * some cleaning
- * updated metadata.xml
- * added tclx-8.4 and tkimg-1.3
- * added skycat-3.0.1
- * orsa-0.7-r1: ebuild update
- * orsa-0.7-r1: qt -> qt3 use flag
- * deleted minuit (now in >=root-5)
- * new ebuild for libafterimage
- * major root-5.12.00e ebuild update, removed old one.
- * scientificpython-2.5.11 update
- * cleaning white spaces, digest and others.
- * some cleaning
- * version bump for openmpi+pg fortran compiler
- * added new fortran eclass
- * added matplotlib-0.87.5, removed old (buggy) 0.87.4-r1
- * updated root to 5.12a and moved to sci-physics
- * added geant321-3-21.14
- * added cernlib-montecarlo-2005
- * added paw-2.14.04
- * split cernlib, updated ebuild and put it in sci-physics
- * added scientificpython-2.4.11 and scientificpython-2.5.10
- * added torque-2.1.2
- * added scipy-0.5.1
- * fixed a test in umfpack-5.0.1
- * added umfpack-5.0.1
- * added swarp-2.16.0
- * added sextractor-2.5.0
- * added cmt-1.18.20060606, removed old versions
- * added numpy-1.0_beta5, removed old versions
- * numarray-1.5.2: version update and clean
- * added matplotlib-0.87.4-r1
- * more flexibility to change versions of AMD and UFconfig
- * coot: bump to 0.1.2
- * added a forgotten file
- * changed download url for UFconfig to a fixed version instead of current
- * changed amd download url to a fixed version (1.2) instead of current
- * matplotlib: updated to 0.87.4-r1, removed 0.87.3 and various cleanups
- * agg: updated Manifest, removed agg-2.3
- * fixed sandbox violation with USE flag doc
- * matio-1.3.0 download url fixed
- * matio-1.3.0 (version bump); freemat-2.0 (patch for building with matio-1.3.0)
- * added texmacs-1.0.6.6
- * Corrected herd in metadata.xml
- * added qcl-0.6.2
- * new version: texmacs-1.0.6.5
- * new version: texmacs-1.0.6.5
- * Added xspice and X use flag. See bug 140402
- * New ebuild for gerbv-1.0.2
- * removed old files
- * Version bump to 0.99.1
- * Version bump to 0.99.1
- * Making repoman happy.
- * Version bump. Removed old version
- * Removed some ebuilds older than the ones in the tree
- * added: freemat-2.0
- * new version: texmacs-1.0.6.4
- * Added initial ebuild for rkward
- * Minor fixes to kayali in order to please repoman
- * minor cleanups
- * new version: texmacs-1.0.6.3
- * Adding kayali ebuild
- * Merged ccp4, coot and deps to gentoo-x86
- * Merged ccp4, coot and deps to gentoo-x86
- * bug fix in matio-1.1.4
- * added matio-1.1.4, removed matio-1.0 (this last ebuild was unsatisfactory)
- * There's a new coot 0.1.2-pre1 with fixed hydrogen hiding.
- * added USE flags for texmacs
- * added matio-1.0
- * matplotlib: cleanup
- * matplotlib-0.87.3-r1: fixed wxpython versioning, added patch for tcltk
- * imaxima: changed ChangeLog
- * imaxima-0.94b: added patch
- * maxima-5.9.3-r1: fixed linguas, added new patches
- * ccp4 double-defines gerror_ in library_f.c on ppc/gcc4
- * pyfits-1.0.1: version bump
- * numpy-0.9.8: fixed some typos
- * Add missing patch
- * Make coot prereleases work.
- * ccp4: install everything formerly in /usr/lib/ccp4/ to /usr/share/ccp4/ with the exception of ccp4i, because it contains binaries and scripts. Fix installation of some html docs that tried going to /usr/html/. Fix generation of symlinks in /usr/lib/ccp4/ so ccp4i documentation works. Also sed MOLREPLIB in the setup scripts, so programs using it work.
- * Minimal changes to get ccp4 6.0.1 working.
- * Initial bump of coot to 0.1.2-pre1
- * arpack: fixed typo
- * added imaxima-0.94b
- * added maxima-5.9.3-r1
- * cfitsio: fix $PF to $ for docs
- * Bump ccp4 to 6.0.1
- * Instead of a hackish check for whether our rpaths will kills us, just add stricter to RESTRICT.
- * agg-2.4: redigesting
- * scigraphica: fixed ALL_LINGUAS
- * libscigraphica: fixed ALL_LINGUAS
- * matplotlib-0.87.3: version bump
- * scigraphica & libscigraphica: major update
- * sci-astronomy: cleanup
- * umfpack: fixed a typo in libtool tag
- * scipy-0.4.9: added swig dependency for umfpack bindings
- * numeric-24.2-r1: cleaned, updated changelog.
- * numpy-0.9.8: blocks f2py. tested with gcc-4.1
- * added algae-4.3.6
- * scipy-0.4.9: version bump + fixes
- * dev-python: cleanup
- * added numeric-24.2-r1: various fixes
- * arpack96-r1: autotoolization
- * Moved the the portage tree.
- * Minor updates.
- * cernlib-2005-r1: fixed cernlib script, added imake dep.
- * added pgplot-5.2.2-r1
- * Bump coot.
- * Pull in coot-data, also add missing guile-gui dep
- * cfitsio-3.006-r1: proper libtoolization
- * numpy-0.9.8: version bump
- * agg-2.4: updated for X modular
- * orsa-0.7.0-r1: added patch to compile with for gcc-4.1
- * added texmacs-1.0.6.2
- * matplotlib-0.87.2-r2.ebuild: swap numeric/numpy
- * wxmaxima: fixed for wxwidget versioning
- * Moved to the main portage tree.
- * added yorick-1.5.22
- * added qtiplot-0.8.5
- * added keyword -amd64
- * Stop patching in gfortran 4.0 tarball and remove the associated patch. Bill Scott suggests the stuff's already in 6.0.
- * numarray-1.5.1-r2: fixed for gcc-4.1, lapack and headers
- * Add ccp4 patches from prerelease/ section. Pass --tmpdir so imake doesn't attempt to write to /imakeXXXXXX
- * Forgot to add the ccp4 patch to fix builds w/ gcc 4.1
- * added scigraphica-2.1.0 and libscigraphica-2.1.1
- * torque: version bump to 2.1.0
- * added blas-docs and lapack-docs
- * agg-2.4: fixed virtual/x11
- * agg: updated to 2.4
- * wxmaxima: version bump to 0.6.5
- * cmt-1.18: version bump and fixed emacs USE flag
- * openmpi: fixed use fortran
- * Update sauerbraten version. Add RMD160 and SHA256 digests to ccp4.
- * cmt-1.18.20060301.ebuild: fixed CMTDIR
- * Add gfortran to allowed compilers.
- * Don't mirror this stuff.
- * Since we install with insecure RPATH settings, add a check to see whether portage has been edited to allow it.
- * Apply upstream patches.
- * Set CCP4_LIB to try and get the X programs linking with libxdl_view.
- * Try einstall instead of make install to see whether it improves rpath issues.
- * Do a more generic sed to change CCP4_MASTER.
- * Fix up some formatting.
- * Add a ccp_patch() wrapper that makes it look like we're bulk patching.
- * Minimal changes to get it working.
- * Copy 5.99.5 to new version.
- * added cmt-1.18.20060301
- * minuit: fixed ChangeLog
- * root-5.10.00: fixed CXXFLAGS, doc
- * general cleaning
- * root-5.10.00: added doc keyword and install
- * cernlib-2005: fixed cfortran to use installed one.
- * cernlib: fixed doc targets
- * cfortran-4.4: updated debian patch
- * root-5.10.00: fixed EXTRA_ECONF and some cleaning
- * added root-5.10.00 (major version bump)
- * cernlib-2005: fixed a doc installation
- * added cernlib-2005
- * added agg-2.3 (for matplotlib)
- * matplotlib-0.87.2-r2: added agg support
- * openmpi: fixed digest
- * Removed src_compile
- * removed useless src_compile
- * Adding ebuild for generecon
- * Merge in comet overlay.
- * Initial commit of portage overlay.
- * Initial commit of portage overlay.
- * arpack cleaning
- * openmpi-1.0.2: version bump
- * major update for umfpack-4.6
- * arpack: fixed a bunch of things, new blas flag, libtoolization.
- * added mkl-8.0.2.004.ebuild (simple version bump)
- * Moved to the main portage tree.
- * Added ebuild for magic-7.4.2
- * Adding new ebuild for octave-epstk
- * added mkl-8.1.014 (working experimental version)
- * Fixed documentation issue
- * Moved to the main portage tree.
- * Cleaning up as they are now in the main portage tree.
- * cleaned to sync with portage
- * added gle-4.0.11
- * Fixed IUSE line
- * Various small cleanups of the ebuild, added examples USE flag and marked ~amd64.
- * Version bump
- * maxima-5.9.3: removed unicode patch
- * various ebuild cleaning
- * swarp-2.15.7 version bump
- * cleaned numdisplay
- * added numpy-0.9.6-r1
- * pruned old numpy and added numpy-0.9.6-r1
- * cleaned cfortran and pruned R
- * Removed previous linsmith versions
- * Version bump for linsmith-0.9.4
- * Version bump for linsmith-0.9.4
- * Version bump for linsmith-0.9.4
- * maxima-5.9.3: version bump, fixes + removed 5.9.2
- * matplotlib/Manifest: fixed
- * added an ATLAS check. corrected some path in site.cfg
- * mkl-8.0.1.006.ebuild: added env.d and a few cleaning
- * openmpi-1.0.1.ebuild: fixed links added noexecstack and
- * numarray-1.5.1-r1.ebuild: put lapack sed in src_unpack
- * openmpi-1.0.1.ebuild: fix USE flags, links
- * cleaning
- * torque-2.0.0_p8.ebuild: now pic only for libpbs with a patch
- * torque-2.0.0_p8.ebuild: forced fPIC and added PBS_SERVER_NAME
- * openmpi-1.0.1.ebuild: removed warning if not pic
- * arpack-96.ebuild: fortran and mpi fixes
- * numpy-0.9.6.ebuild: fix atlas/lapack again
- * removed src_test
- * added scipy-0.4.8.ebuild with proper fftw and atlas treatment
- * added matplotlib-0.87.2.ebuild, also with wxpython flag
- * scipy-0.4.6.ebuild: removed ifc flag
- * torque-2.0.0_p8.ebuild: changed pic and tcltk behaviour, added netkit-rsh
- * openmpi-1.0.1.ebuild: slight more info on pic behaviour
- * scipy-0.4.6.ebuild: removed eselect dependencies
- * fixed pic behaviour for openmpi and torque
- * added openpbs-common-1.1.1
- * deleted torque-2.0.0_p7.ebuild and changed DEPENDS for torque-2.0.0_p8.ebuild
- * white space cleaning for torque-2.0.0_p8.ebuild
- * added torque-2.0.0_p8.ebuild and patches
- * openmpi-1.0.1.ebuild: removed pic flag, forced -fPIC for amd64
- * scipy-0.4.6.ebuild: fixed threaded-ATLAS directory
- * scipy-0.4.6.ebuild: eselect corrections
- * openmpi-1.0.1.ebuild: added pic use flag and corrected fortran stuff
- * bumped numpy-0.9.6
- * added matplotlib-0.87.1 patches
- * added sys-cluster/{torque,openmpi} very experimental ebuilds
- * matplotlib-0.87.1 version bump and doc clean
- * added numpy/ChangeLog
- * changed lapack config: added use flag. removed test for now.
- * added numarray-1.5.1-r1
- * added matplotlib-0.87
- * added cfitsio-3.006
- * forgot scipy-0.4.6 digest
- * added numpy-0.9.5
- * scipy-0.4.6 version bump
- * general cleaning (licenses, USE flags descriptions, headers)
- * orsa-0.7.0.ebuild: removed useless USE flags
- * cfortran-4.4.ebuild: fixed error in license
- * scipy-0.4.4: lapack-atlas instead of virtual/lapack
- * mkl: added blas/lapack routines files for shared libs
- * Adding new freehdl from bug 122790
- * mkl-8.0.1.006.ebuild: make shared libs, removed cpu detection, threading by default
- * mkl: removing threaded scripts and c-lapack
- * local USE flags description file added
- * updated license and metadata.xml
- * scipy/scipy-0.4.4.ebuild: changed fortran
- * added scipy-0.4.4
- * mkl-8.0.1.006.ebuild: improved cpu detection
- * mkl-8.0.1.006: config scripts, license stuff
- * added licenses directory and AURA, mkl licenses
- * mkl: reworked ebuild: +fortran95, rpm work and install, not yet operational
- * mkl-8.0.1.006.ebuild: reworked lib install + tests
- * mkl/mkl-8.0.1.006.ebuild: corrected some installation bugs
- * added experimental mkl-8.0.1.006
- * Version bump
- * maxima-5.9.2.ebuild: changed gnuplot category for sci-visualisation
- * maxima-5.9.2.ebuild: changed gnuplot dep for sci-visualisation
- * maxima-5.9.2: final fixes for ebuild and updated metadata.xml
- * maxima-5.9.2.ebuild: some cleaning
- * maxima-5.9.2.ebuild: gcl use flag is back.
- * maxima-5.9.2: added patches (browser+emaxima) + cleaning
- * gdl in portage
- * maxima-5.9.2.ebuild: forced >=sbcl-0.9.4, and rlwrap change
- * maxima-5.9.2.ebuild: put back the eautoreconf to build on x86
- * Adding geos-2.2.1 Bug 120479
- * Adding geos-2.2.1 Bug 120479
- * Adding a new patch to configure.ac
- * ebuild cleaning
- * added maxima-5.9.2
- * added wxmaxima package
- * Adding a missing digest
- * pspp-0.4.0.ebuild: emacs now uses elisp-common stuff
- * added package dev-python/numdisplay
- * Adding the path posted in the bug modified to work with 7.6.6. It does not solve the TK problem
- * orsa-0.7.ebuild: change MPI stuff
- * umfpack/umfpack-4.4.ebuild: changed doc behaviour and removed harcoded -j1
- * sci-astronomy/orsa/orsa-0.7.0.ebuild: restored lam-mpi
- * added sci-astronomy/orsa-0.7.0
- * Very initial import of brlcad, from bug 77197. Does not compile here yet - needs work.
- * fixed for USE=examples
- * removed celestia (in portage)
- * added package arpack (version -96)
- * celestia/celestia-1.4.0.ebuild: fixed USE=kde deps.
- * cleaning metadata and ebuild
- * ebuild cleaning
- * ebuild cleaning
- * ebuild cleaning
- * In the main portage tree.
- * Moved to the main portage tree.
- * Several minor corrections and enhancements.
- * added package pygsl
- * pyfits/pyfits-1.0.ebuild: license info
- * Moved veusz to the main repo - thanks.
- * Cleaned up some white space issues.
- * Corrected a few whitespace issues, added doc to IUSE.
- * sci-astronomy/celestia/celestia-1.4.0.ebuild: dependencies cleaning
- * ds9-4.0_beta7.ebuild: added () for dohtml
- * added celestia-1.4.0.ebuild
- * added veusz-0.8.ebuild
- * Added pspp-0.4.0.ebuild
- * minuit-1.7.9 version bump
- * minuit-1.7.9 version bump
- * minuit-1.7.9.ebuild version bump
- * minuit-1.7.6.ebuild: added insinto for doc, cfortran-4.4.ebuild added a link for cfortran.h
- * New ebuild added: cfortran
- * Small fix to header too...
- * Tweaking dep.
- * Initial import from bug 50565.
- * IDL_STARTUP + cosmetics
- * added umfpack-4.4.ebuild
- * change gdl category to dev-lang + slight ebuild update
- * minuit: pdf doc with DISTDIR
- * cosmetics + RDEPEND without icc
- * Added new ebuild for swarp-2.15.6
- * Added new ebuild for ds9-4.0_beta7
- * Adding ebuild for kseg
- * added pyfits-1.0.ebuild
- * added examples to test even without doc flag
- * USE flags cleaning (ncurses, imagemagick and python)
- * Adding linsmith patch
- * Added new ebuild for minuit-1.7.6
- * Added new ebuild for gdl-0.8.11
- * Added new ebuild for sextractor-2.4.4
- * Adding linsmith-0.9.2.ebuild
- * Adding emu-1.10 form bug #98051
- * Added new ebuild for linsmith-0.9.2
- * Adding R-2.2.0 ebuild from bug 112022
- * Adding kst-1.1.1
- * New ebuild for linsmith-0.9.1
- * Removed boinc -> moved to main tree.
- * Cleaned up deps on X and modular X, bug 110606.
- * Add experimental boinc ebuild to the overlay for testing.
- * Moved to portage main tree.
- * Small cleanup.
- * Forgot to add the revbumped kst ebuild...
- * Clean up old ebuilds not changed in overlay, revision bump, reset keywords and a few small ebuild cleanups.
- * new ebuild for another smith chart calculation program
- * New patch to really fix bug 104617
- * Added media-gfx/kst with patch to fix bug #104617
- * Fixed some errors in the ebuild and in the ChangeLog
- * Adding new ebuild for gsmc-1.0
- * Created initial directory structure.
# ChangeLog for <CATEGORY>/<PACKAGE_NAME>
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
*<PACKAGE_NAME>-<PACKAGE_VERSION>-<PACKAGE_RELEASE> (DD MMM YYYY)
diff --git a/skel.ebuild b/skel.ebuild
index 6c9dc851b..93f5e1626 100644
--- a/skel.ebuild
+++ b/skel.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
diff --git a/skel.metadata.xml b/skel.metadata.xml
index 4dcddcb75..17b08b499 100644
--- a/skel.metadata.xml
+++ b/skel.metadata.xml
@@ -1,34 +1,20 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<!--
-$Header: /var/cvsroot/gentoo-x86/skel.metadata.xml,v 1.21 2012/02/07 00:03:15 idl0r Exp $
-
-This is the example metadata file.
-The root element of this file is <pkgmetadata>. Within this element a
-number of subelements are allowed: herd, maintainer, and
-longdescription. herd is a required subelement.
-
-For a full description look at:
-http://www.gentoo.org/proj/en/devrel/handbook/handbook.xml?part=2&chap=4
-
-
-Before committing, please remove the comments from this file. They are
-not relevant for general metadata.xml files.
--->
<pkgmetadata>
- <herd>sci</herd>
+
+<herd>sci-blah</herd>
<maintainer>
- <email>@gentoo.org</email>
-<!-- <description>Description of the maintainership</description> -->
+ <email>my.email@blah.doh</email>
</maintainer>
-<!-- <longdescription>Long description of the package</longdescription> -->
-<!--
+
+<longdescription>
+ Long description of the package. Check the homepage. Make it useful
+ for users.
+</longdescription>
<use>
- <flag name="flag">Description of how USE='flag' affects this package</flag>
- <flag name="userland_GNU">Description of how USERLAND='GNU' affects this
- package</flag>
- <flag name="aspell">Uses <pkg>app-text/aspell</pkg> for spell checking.
- Requires an installed dictionary from <cat>app-dicts</cat></flag>
+ <flag name="flag">Description of how USE='flag' affects this package</flag>
</use>
--->
+<upstream>
+ <remote-id type="blah">name-of-package-in-blah</remote-id>
+</upstream>
</pkgmetadata>