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authorjokey <jokey@32389bae-6d03-0410-99cf-db05cde120eb>2007-10-07 05:29:17 +0000
committerjokey <jokey@32389bae-6d03-0410-99cf-db05cde120eb>2007-10-07 05:29:17 +0000
commitf0231c57a7d9d1746c0ded96d7d6d9927bc009a9 (patch)
tree4b825dc642cb6eb9a060e54bf8d69288fbee4904
parentdeleted ifc and icc, now in main tree (diff)
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diff --git a/app-office/texmacs/ChangeLog b/app-office/texmacs/ChangeLog
deleted file mode 100644
index 11a6574d9..000000000
--- a/app-office/texmacs/ChangeLog
+++ /dev/null
@@ -1,282 +0,0 @@
-# ChangeLog for app-office/texmacs
-# Copyright 2002-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*texmacs-1.0.6.11 (04 Sep 2007)
-04 Sep 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.11.ebuild:
- version bump
-
-*texmacs-1.0.6.10-r1 (28 Aug 2007)
-28 Aug 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.10-r1.ebuild, +files/texmacs-maxima-5.13.0.patch,
- -texmacs-1.0.6.9-r1.ebuild, -files/texmacs-maxima-5.12.0.patch:
- patch to run maxima-5.13.0 included
-
-*texmacs-1.0.6.10 (15 May 2007)
- 15 May 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.10.ebuild +files/texmacs-1.0.6.10.patch -texmacs-1.0.6.9.ebuild:
- Version bump
-
-6 May 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- Added a check that, if guile is 1.8, it is emerged with +deprecated
-
-*texmacs-1.0.6.9-r1 (3 May 2007)
- 3 May 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- -texmacs-1.0.6.6.ebuild -texmacs-1.0.6.7.ebuild -texmacs-1.0.6.8.ebuild
- +texmacs-1.0.6.9-r1.ebuild +files/texmacs-maxima-5.12.0.patch:
- patch to run maxima-5.12.0 included
-
-*texmacs-1.0.6.8 (21 Jan 2007)
-
- 21 Jan 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.8.ebuild:
- Version bump
-
-*texmacs-1.0.6.7 (26 Dec 2006)
-
- 26 Dec 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.7.ebuild -texmacs-1.0.6.2.ebuild -texmacs-1.0.6.3.ebuild
- -texmacs-1.0.6.4.ebuild -texmacs-1.0.6.5.ebuild:
- Version bump; USE flag aspell removed (now TeXmacs uses
- either ispell or aspell automatically); cleaning up old versions
-
-*texmacs-1.0.6.6 (22 August 2006)
-
- 22 August 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.6.ebuild:
- Version bump
-
-*texmacs-1.0.6.5 (8 August 2006)
-
- 8 August 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.5.ebuild:
- Version bump
-
-*texmacs-1.0.6.4 (27 June 2006)
-
- 27 June 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.4.ebuild:
- Version bump
-
-*texmacs-1.0.6.3 (20 June 2006)
-
- 20 June 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.3.ebuild:
- Version bump
-
-*texmacs-1.0.6.2 (1 June 2006)
-
- 1 June 2006; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +texmacs-1.0.6.2.ebuild:
- Version bump, USE flag to use aspell instead of ispell
-
- 29 May 2006; Martin Ehmsen <ehmsen@gentoo.org>
- +files/texmacs-1.0.6-gcc-4.1.patch, texmacs-1.0.6-r1.ebuild:
- Fixed gcc-4.1 compilation failure, bug #130708.
-
- 01 May 2006; Martin Ehmsen <ehmsen@gentoo.org> texmacs-1.0.4-r1.ebuild,
- texmacs-1.0.5.6.ebuild, texmacs-1.0.6-r1.ebuild:
- Removed libtool from RDEPEND, found by QA script.
-
-*texmacs-1.0.6-r1 (20 Apr 2006)
-
- 20 Apr 2006; Martin Ehmsen <ehmsen@gentoo.org>
- +files/texmacs-1.0.6-maxima-5.9.3.patch, -texmacs-1.0.6.ebuild,
- +texmacs-1.0.6-r1.ebuild:
- Added patch to make texmacs work with the latest sci-mathematics/maxima
- (5.9.3), bug #130099.
-
- 29 Jan 2006; Martin Ehmsen <ehmsen@gentoo.org> files/TeXmacs.desktop,
- -texmacs-1.0.5.2.ebuild, +texmacs-1.0.6.ebuild:
- Version bump, bug #112104.
- Changed the path to the TeXmacs icon in the desktop file.
- Removed old version that was not ported to modular X.
-
-*texmacs-1.0.6 (29 Jan 2006)
-
- 25 Jan 2006; Alexandre Buisse <nattfodd@gentoo.org>
- texmacs-1.0.4-r1.ebuild, texmacs-1.0.5.6.ebuild:
- Modular X porting.
-
- 02 Jan 2006; Alexandre Buisse <nattfodd@gentoo.org>
- texmacs-1.0.4-r1.ebuild, texmacs-1.0.5.2.ebuild, texmacs-1.0.5.6.ebuild:
- Don't install COPYING and LICENSE files (but COMPILE stays because it has
- some runtime common bugs explained). Thanks to Markus Ullman in bug #117474.
-
-*texmacs-1.0.5.6 (08 Aug 2005)
-
- 08 Aug 2005; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.4.7.ebuild,
- -texmacs-1.0.5.ebuild, +texmacs-1.0.5.6.ebuild:
- Version bumped.
-
-*texmacs-1.0.5.2 (29 May 2005)
-
- 29 May 2005; Mamoru KOMACHI <usata@gentoo.org> +texmacs-1.0.5.2.ebuild:
- Version bumped. This closes bug #94250.
-
-*texmacs-1.0.5 (21 May 2005)
-
- 21 May 2005; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.4.4.ebuild,
- -texmacs-1.0.4.5.ebuild, +texmacs-1.0.5.ebuild:
- Version bumped. This closes bug #91064.
-
-*texmacs-1.0.4.7 (12 Apr 2005)
-
- 12 Apr 2005; Mamoru KOMACHI <usata@gentoo.org> +texmacs-1.0.4.7.ebuild:
- Version bumped.
-
- 21 Feb 2005; Jan Brinkmann <luckyduck@gentoo.org> texmacs-1.0.4.5.ebuild:
- added ~amd64 to KEYWORDS. fixes #71106
-
- 02 Jan 2005; Ciaran McCreesh <ciaranm@gentoo.org> :
- Change encoding to UTF-8 for GLEP 31 compliance
-
- 11 Dec 2004; Jason Wever <weeve@gentoo.org> texmacs-1.0.4-r1.ebuild:
- Stable on sparc.
-
-*texmacs-1.0.4.5 (11 Dec 2004)
-
- 11 Dec 2004; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.4.3.ebuild,
- +texmacs-1.0.4.5.ebuild:
- Version bumped.
-
-*texmacs-1.0.4.4 (15 Nov 2004)
-
- 15 Nov 2004; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.3-r1.ebuild,
- +texmacs-1.0.4.4.ebuild, -texmacs-1.0.4.ebuild:
- Version bumped. Added static USE flag. This closes bug #71195.
-
- 04 Nov 2004; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.4-r1.ebuild,
- -texmacs-1.0.4.1.ebuild:
- Marked 1.0.4-r1 stable on x86, ppc and alpha.
-
-*texmacs-1.0.4.3 (10 Oct 2004)
-*texmacs-1.0.4-r1 (10 Oct 2004)
-
- 10 Oct 2004; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.3.10.ebuild,
- +texmacs-1.0.4-r1.ebuild, texmacs-1.0.4.1.ebuild, +texmacs-1.0.4.3.ebuild,
- texmacs-1.0.4.ebuild:
- Version bumped.
-
-*texmacs-1.0.4.1 (28 Aug 2004)
-
- 28 Aug 2004; Mamoru KOMACHI <usata@gentoo.org> -texmacs-1.0.3.9.ebuild,
- -texmacs-1.0.3.ebuild, +texmacs-1.0.4.1.ebuild, +texmacs-1.0.4.ebuild:
- Version bumped. Removed old ebuilds.
-
-*texmacs-1.0.3.10 (07 Jul 2004)
-
- 07 Jul 2004; Mamoru KOMACHI <usata@gentoo.org> +texmacs-1.0.3.10.ebuild,
- -texmacs-1.0.3.7.ebuild:
- Version bumped.
-
-*texmacs-1.0.3.9 (23 Jun 2004)
-
- 23 Jun 2004; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.3-r1.ebuild,
- +texmacs-1.0.3.9.ebuild, texmacs-1.0.3.ebuild:
- Version bumped. Marked 1.0.3 stable.
-
- 01 May 2004; Jason Wever <weeve@gentoo.org> texmacs-1.0.3.7.ebuild:
- Added ~sparc keyword to help resolve #49540.
-
- 26 Apr 2004; Bryan Østergaard <kloeri@gentoo.org> texmacs-1.0.3.7.ebuild:
- Keyworded ~alpha, requested by Decade at freenode/#gentoo-alpha.
-
-*texmacs-1.0.3.7 (26 Apr 2004)
-*texmacs-1.0.3-r1 (26 Apr 2004)
-
- 26 Apr 2004; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.1-r1.ebuild,
- texmacs-1.0.2.4.ebuild, texmacs-1.0.3-r1.ebuild, texmacs-1.0.3.3.ebuild,
- texmacs-1.0.3.7.ebuild, texmacs-1.0.3.ebuild:
- Added ebuilds from stable and development branch. Marked 1.0.3
- stable on x86. Added flag-o-matic back. (it is actually in portage
- functions but it is recommended to inherit it)
-
- 25 Apr 2004; Aron Griffis <agriffis@gentoo.org> texmacs-1.0.1-r1.ebuild:
- Add die following econf for bug 48950
-
-*texmacs-1.0.3.3 (21 Feb 2004)
-*texmacs-1.0.3 (21 Feb 2004)
-
- 12 Mar 2004; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.3.3.ebuild,
- texmacs-1.0.3.ebuild, files/TeXmacs.desktop:
- Added TeXmacs appliations menu entry, contributed by Keith Lea
- <keith@cs.oswego.edu>. Closing bug #43545
-
- 21 Feb 2004; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.1-r1.ebuild,
- texmacs-1.0.1.23.ebuild, texmacs-1.0.1.ebuild, texmacs-1.0.2.4.ebuild,
- texmacs-1.0.3.3.ebuild, texmacs-1.0.3.ebuild:
- Version bumped, closing bug #38894. Removed old versions.
-
- 09 Dec 2003; Heinrich Wendel <lanius@gentoo.org> texmacs-1.0.1-r1.ebuild,
- texmacs-1.0.1.23.ebuild, texmacs-1.0.1.ebuild, texmacs-1.0.2.4.ebuild:
- changed app-text/ghostscript to virtual/ghostscript
-
-*texmacs-1.0.2.4 (28 Oct 2003)
-
- 28 Oct 2003; Mamoru KOMACHI <usata@gentoo.org> texmacs-1.0.1-r1.ebuild,
- texmacs-1.0.1.23.ebuild, texmacs-1.0.1.ebuild, texmacs-1.0.2.4.ebuild:
- Version bumped. Changed app-text/tetex to virtual/tetex.
- Closing Bug #31032.
-
- 14 Sep 2003; Mike Gardiner <obz@gentoo.org> texmacs-1.0.0.19.ebuild:
- Removed old version
-
-*texmacs-1.0.1.23 (14 Sep 2003)
-
- 14 Sep 2003; Mike Gardiner <obz@gentoo.org> texmacs-1.0.1.23.ebuild:
- New version
-
-*texmacs-1.0.1-r1 (13 Sep 2003)
-
- 13 Sep 2003; Mike Gardiner <obz@gentoo.org> texmacs-1.0.1-r1.ebuild:
- New revision adding spell support through ispell
-
- 12 Jun 2003; <msterret@gentoo.org> texmacs-1.0.0.19.ebuild,
- texmacs-1.0.1.ebuild:
- fix Header
-
-*texmacs-1.0.1 (02 Jan 2002)
-
- 22 Apr 2003; Brandon Low <lostlogic@gentoo.org> texmacs-1.0.0.19.ebuild,
- texmacs-1.0.1.ebuild:
- Change supersed dependencies
-
- 17 Mar 2003; Graham Forest <vladimir@gentoo.org> texmacs-1.0.1.ebuild:
- set ~ppc in keywords
-
- 02 Jan 2002; Matthew Turk <satai@gentoo.org> texmacs-1.0.1.ebuild :
-
- Included some opts, manually turned off all inlining. Hopefully this'll work
- nicely. Also bumped version.
-
-*texmacs-1.0.0.19 (23 Oct 2002)
-
- 06 Nov 2002; Seemant Kulleen <seemant@gentoo.org> texmacs-1.0.0.19.ebuild :
-
- Changed to use econf so things get installed in the correct locations
- and custom CXXFLAGS settings. Closes bug #10220 by:
- jap1@ionet.net (Jacob Perkins)
-
- 23 Oct 2002; Matthew Turk <satai@gentoo.org> :
-
- New version, testing. Changing to unstable.
-
-*texmacs-1.0.0.16 (13 Sep 2002)
-
- 13 Sep 2002; Matthew Turk <satai@gentoo.org> ChangeLog :
-
- New version, close submission #7860
-
-*texmacs-1.0.0.8 (03 Jul 2002)
-
- 03 Jul 2002; Dan Armak <danarmak@gentoo.org> ChangeLog :
-
- New version, close submission #4277
-
-*texmacs-1.0 (29 May 2002)
-
- 29 May 2002; Dan Armak <danarmak@gentoo.org> changelog:
-
- Initial ebuild. Based on bug #.
diff --git a/app-office/texmacs/Manifest b/app-office/texmacs/Manifest
deleted file mode 100644
index 2e8c8ccd7..000000000
--- a/app-office/texmacs/Manifest
+++ /dev/null
@@ -1,37 +0,0 @@
-AUX TeXmacs.desktop 267 RMD160 9c538fb430c4e496a9571e84d0c1622c16279045 SHA1 baca78d1d4965ee4075158953a4c3fed26e855eb SHA256 f6292ac99e7adc8efd006df2dc458b4f8bc075dd5c4be2b8fdeb30a63198ff08
-MD5 235442e11a960e89fe244ad6307eccf5 files/TeXmacs.desktop 267
-RMD160 9c538fb430c4e496a9571e84d0c1622c16279045 files/TeXmacs.desktop 267
-SHA256 f6292ac99e7adc8efd006df2dc458b4f8bc075dd5c4be2b8fdeb30a63198ff08 files/TeXmacs.desktop 267
-AUX texmacs-1.0.6.11-maxima-5.13.0.patch 1858 RMD160 06fefa983cd5f44e78d938e5338f8073de97bc5e SHA1 17301f2bd38c288e18cb90bb04e98aa26b37f127 SHA256 05f0dd478be23402fd510ec6220e17fe07bfeb336ec0587bc30bcf828e466c78
-MD5 94ad0cdf65c35bfb115fa4b6e0149d1b files/texmacs-1.0.6.11-maxima-5.13.0.patch 1858
-RMD160 06fefa983cd5f44e78d938e5338f8073de97bc5e files/texmacs-1.0.6.11-maxima-5.13.0.patch 1858
-SHA256 05f0dd478be23402fd510ec6220e17fe07bfeb336ec0587bc30bcf828e466c78 files/texmacs-1.0.6.11-maxima-5.13.0.patch 1858
-AUX texmacs-maxima-5.13.0.patch 3082 RMD160 2df8c4970b5477342e3f18147d0a7e2b26c223e0 SHA1 2e763cdd644e60e2c20c54b71c83b4b10865afcb SHA256 2b8346d01902eb6a9ebde7ea4c78f31016e5b27d26e043195390d11233190ed2
-MD5 6236bb1a4b7ec05cd4090fdf6f32b657 files/texmacs-maxima-5.13.0.patch 3082
-RMD160 2df8c4970b5477342e3f18147d0a7e2b26c223e0 files/texmacs-maxima-5.13.0.patch 3082
-SHA256 2b8346d01902eb6a9ebde7ea4c78f31016e5b27d26e043195390d11233190ed2 files/texmacs-maxima-5.13.0.patch 3082
-DIST TeXmacs-1.0.6.10-src.tar.gz 4167490 RMD160 11ce6db065e6d7a060fecdd10e726320f88a11e6 SHA1 0774bded87ff0fa373e048aeac91f171db95e151 SHA256 59b823f2df27d635e3497b743ded85ef3af12c0fb783e1fc880465a3a0e93edb
-DIST TeXmacs-1.0.6.11-src.tar.gz 4218252 RMD160 c5512c675fbfad49abe289fc9a88b31c3c13d8b5 SHA1 7f1a79b7299f2d2188e07c9be3c83b89eda19938 SHA256 d3a347944446ee2e916143bd494e14328482379f3dc3db8801a8cb3a07ca47a8
-DIST TeXmacs-600dpi-fonts.tar.gz 2899193 RMD160 b5a27a59ed0c178f94836b828d12d3534b506582 SHA1 0a3a279b842b63f55449856690483d07c6e1219c SHA256 e8eeb3c97a1405fd037b0567f683a6d2225d47c7829893b9768bd6c1c707cc81
-EBUILD texmacs-1.0.6.10-r1.ebuild 1914 RMD160 50c8b93ead81079b56a98f98b8ef7944b65549ce SHA1 7e14583ddb36dec7b7b3218ef4935ecb5624efaa SHA256 26c02fec15abbf3e1e8484f54f92ac5fcde8e9a7196460b7d8540aa870651104
-MD5 5ca378140a1b9c44da8301e644a65a8d texmacs-1.0.6.10-r1.ebuild 1914
-RMD160 50c8b93ead81079b56a98f98b8ef7944b65549ce texmacs-1.0.6.10-r1.ebuild 1914
-SHA256 26c02fec15abbf3e1e8484f54f92ac5fcde8e9a7196460b7d8540aa870651104 texmacs-1.0.6.10-r1.ebuild 1914
-EBUILD texmacs-1.0.6.11.ebuild 1913 RMD160 2b23faf757819b9bf498eeed528c7f0e4bdf62b6 SHA1 9d762401d8ae71b78b647fc6c1af69e71a9dd3b4 SHA256 1c5f57349f67d656f11f559c4d073dd65772a4dfdaa1c3003c37786710828e3d
-MD5 54a2255c72e0b7196035d3bdc00aa610 texmacs-1.0.6.11.ebuild 1913
-RMD160 2b23faf757819b9bf498eeed528c7f0e4bdf62b6 texmacs-1.0.6.11.ebuild 1913
-SHA256 1c5f57349f67d656f11f559c4d073dd65772a4dfdaa1c3003c37786710828e3d texmacs-1.0.6.11.ebuild 1913
-MISC ChangeLog 9378 RMD160 10adf987fd53c30bc6ebd55ea57e236c736b9b91 SHA1 4649e49fac32d1644dae7fe4bda28fe477bcb270 SHA256 a39cf2f9390f5c2ff81b6a3bfc2a0a1f3af8d110bf4652f6d56615c1ff95fc68
-MD5 5afac9fc499d9fd34759b84bb95808e2 ChangeLog 9378
-RMD160 10adf987fd53c30bc6ebd55ea57e236c736b9b91 ChangeLog 9378
-SHA256 a39cf2f9390f5c2ff81b6a3bfc2a0a1f3af8d110bf4652f6d56615c1ff95fc68 ChangeLog 9378
-MISC metadata.xml 447 RMD160 e29f6d98fb4ed38a56ef9415b5ce356f7660b8b5 SHA1 45c581010bad5fedc2ad5e2cb01722e51b618269 SHA256 65665d792841d785709329fb8d2770006cc9888a992b0ce64f5572f4b25520ab
-MD5 97b4c157ab6219cb08b82945f14b5aa3 metadata.xml 447
-RMD160 e29f6d98fb4ed38a56ef9415b5ce356f7660b8b5 metadata.xml 447
-SHA256 65665d792841d785709329fb8d2770006cc9888a992b0ce64f5572f4b25520ab metadata.xml 447
-MD5 6f40bf7879948acd61a9b93c4b397f50 files/digest-texmacs-1.0.6.10-r1 530
-RMD160 83f94843359120baa885b5ca11912c53815a37c6 files/digest-texmacs-1.0.6.10-r1 530
-SHA256 b04276d699c3771652d07d71be0ec5a6fb903077ceb05b3ede10bf7af271d4d4 files/digest-texmacs-1.0.6.10-r1 530
-MD5 42d86063d3c7f130e0940d4dca61cba0 files/digest-texmacs-1.0.6.11 530
-RMD160 520be750e1577e27eda3fc2ab8180719a6e8b9c3 files/digest-texmacs-1.0.6.11 530
-SHA256 16b1237290cac6d3fecc94b77e49440ea16f81b987b677d321369580f3dd0121 files/digest-texmacs-1.0.6.11 530
diff --git a/app-office/texmacs/files/TeXmacs.desktop b/app-office/texmacs/files/TeXmacs.desktop
deleted file mode 100644
index f51ffe604..000000000
--- a/app-office/texmacs/files/TeXmacs.desktop
+++ /dev/null
@@ -1,10 +0,0 @@
-[Desktop Entry]
-Encoding=UTF-8
-Version=1.0
-Type=Application
-Exec=texmacs
-Icon=/usr/share/TeXmacs/misc/pixmaps/TeXmacs.xpm
-Name=TeXmacs
-GenericName=Scientific Word Processor
-Comment=A scientific word processing application.
-Categories=Application;Office;WordProcessor
diff --git a/app-office/texmacs/files/digest-texmacs-1.0.6.10-r1 b/app-office/texmacs/files/digest-texmacs-1.0.6.10-r1
deleted file mode 100644
index 325a7d015..000000000
--- a/app-office/texmacs/files/digest-texmacs-1.0.6.10-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 073a2de1448b24ef215d6d0d39139dc8 TeXmacs-1.0.6.10-src.tar.gz 4167490
-RMD160 11ce6db065e6d7a060fecdd10e726320f88a11e6 TeXmacs-1.0.6.10-src.tar.gz 4167490
-SHA256 59b823f2df27d635e3497b743ded85ef3af12c0fb783e1fc880465a3a0e93edb TeXmacs-1.0.6.10-src.tar.gz 4167490
-MD5 945dfd3f76b20082aeea8131d87a260f TeXmacs-600dpi-fonts.tar.gz 2899193
-RMD160 b5a27a59ed0c178f94836b828d12d3534b506582 TeXmacs-600dpi-fonts.tar.gz 2899193
-SHA256 e8eeb3c97a1405fd037b0567f683a6d2225d47c7829893b9768bd6c1c707cc81 TeXmacs-600dpi-fonts.tar.gz 2899193
diff --git a/app-office/texmacs/files/digest-texmacs-1.0.6.11 b/app-office/texmacs/files/digest-texmacs-1.0.6.11
deleted file mode 100644
index ebd5969c1..000000000
--- a/app-office/texmacs/files/digest-texmacs-1.0.6.11
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 c05875cf7ae502578d50e07709cab9e1 TeXmacs-1.0.6.11-src.tar.gz 4218252
-RMD160 c5512c675fbfad49abe289fc9a88b31c3c13d8b5 TeXmacs-1.0.6.11-src.tar.gz 4218252
-SHA256 d3a347944446ee2e916143bd494e14328482379f3dc3db8801a8cb3a07ca47a8 TeXmacs-1.0.6.11-src.tar.gz 4218252
-MD5 945dfd3f76b20082aeea8131d87a260f TeXmacs-600dpi-fonts.tar.gz 2899193
-RMD160 b5a27a59ed0c178f94836b828d12d3534b506582 TeXmacs-600dpi-fonts.tar.gz 2899193
-SHA256 e8eeb3c97a1405fd037b0567f683a6d2225d47c7829893b9768bd6c1c707cc81 TeXmacs-600dpi-fonts.tar.gz 2899193
diff --git a/app-office/texmacs/files/texmacs-1.0.6.11-maxima-5.13.0.patch b/app-office/texmacs/files/texmacs-1.0.6.11-maxima-5.13.0.patch
deleted file mode 100644
index 60ee0f182..000000000
--- a/app-office/texmacs/files/texmacs-1.0.6.11-maxima-5.13.0.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-diff -U2 --recursive TeXmacs-1.0.6.11-src.orig/plugins/maxima/bin/maxima_detect TeXmacs-1.0.6.11-src/plugins/maxima/bin/maxima_detect
---- TeXmacs-1.0.6.11-src.orig/plugins/maxima/bin/maxima_detect 2007-09-03 21:47:53.000000000 +0700
-+++ TeXmacs-1.0.6.11-src/plugins/maxima/bin/maxima_detect 2007-08-29 00:22:14.000000000 +0700
-@@ -1,3 +1,3 @@
--#!/bin/sh
-+#!/bin/bash
- # if there is an argument, find maxima_toc.html
-
-@@ -47,5 +47,5 @@
- maxima -d | grep -F 'maxima-htmldir=' | \
- sed -e 's/maxima-htmldir=/"/' -e 's|$|/maxima_toc.html"|' | \
-- cygpath -f -
-+ cygpath -f -
- else
- echo '("cygwin")'
-@@ -62,7 +62,8 @@
- version 5.10
- version 5.11
--version 5.12" >/dev/null
-+version 5.12
-+version 5.13" >/dev/null
- then
-- # 5.9.1 or 5.9.2 or 5.9.3 or 5.10 or 5.11 or 5.12
-+ # 5.9.1 or 5.9.2 or 5.9.3 or 5.10 or 5.11 or 5.12 or 5.13
- maxima -d | grep -F 'maxima-htmldir=' | sed -e \
- 's/maxima-htmldir=/"/' -e 's|$|/maxima_toc.html"|'
-diff -U2 --recursive TeXmacs-1.0.6.11-src.orig/plugins/maxima/bin/tm_maxima TeXmacs-1.0.6.11-src/plugins/maxima/bin/tm_maxima
---- TeXmacs-1.0.6.11-src.orig/plugins/maxima/bin/tm_maxima 2007-09-03 21:47:53.000000000 +0700
-+++ TeXmacs-1.0.6.11-src/plugins/maxima/bin/tm_maxima 2007-08-29 00:23:07.000000000 +0700
-@@ -18,5 +18,5 @@
- 5.9.1.1* | 5.9.2* | 5.9.3*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.9.2.lisp";;
- 5.10.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.10.0.lisp";;
-- 5.11.* | 5.12.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp";;
-+ 5.11.* | 5.12.* | 5.13.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp";;
- cygwin)
- exec maxima.bat -p "`echo $TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp|cygpath --windows -f -`";;
diff --git a/app-office/texmacs/files/texmacs-maxima-5.13.0.patch b/app-office/texmacs/files/texmacs-maxima-5.13.0.patch
deleted file mode 100644
index c2b3c5cd6..000000000
--- a/app-office/texmacs/files/texmacs-maxima-5.13.0.patch
+++ /dev/null
@@ -1,71 +0,0 @@
-diff -U2 --recursive TeXmacs-1.0.6.10-src.orig/plugins/maxima/bin/maxima_detect TeXmacs-1.0.6.10-src/plugins/maxima/bin/maxima_detect
---- TeXmacs-1.0.6.10-src.orig/plugins/maxima/bin/maxima_detect 2007-05-16 00:54:34.000000000 +0700
-+++ TeXmacs-1.0.6.10-src/plugins/maxima/bin/maxima_detect 2007-08-29 00:22:14.000000000 +0700
-@@ -1,3 +1,3 @@
--#!/bin/sh
-+#!/bin/bash
- # if there is an argument, find maxima_toc.html
-
-@@ -37,18 +37,15 @@
- }
-
--PATH="/cygdrive/c/Program Files/Maxima-5.9.2/bin:$PATH"
--PATH="/cygdrive/c/Program Files/Maxima-5.9.3/bin:$PATH"
--export PATH
--
--MAXIMA=`type -p maxima 2>/dev/null`
-+if [ $OSTYPE == "cygwin" ] ; then EXT='.bat'; else EXT=''; fi
-+MAXIMA=`type -p maxima$EXT 2>/dev/null`
- if [ $? -eq 0 ]
- then
-- if [ -f "/usr/bin/cygwin1.dll" ]
-+ if [ $OSTYPE == "cygwin" ]
- then
- if [ "$1" ]
- then
-- maxima.bat -d | grep -F 'maxima-htmldir=' | \
-- sed -e 's/maxima-htmldir=/"/' -e 's|$|/maxima_toc.html"|' \
-- -e 's|\\|/|g' -e 's|C:|/cygdrive/c/|'
-+ maxima -d | grep -F 'maxima-htmldir=' | \
-+ sed -e 's/maxima-htmldir=/"/' -e 's|$|/maxima_toc.html"|' | \
-+ cygpath -f -
- else
- echo '("cygwin")'
-@@ -65,7 +62,8 @@
- version 5.10
- version 5.11
--version 5.12" >/dev/null
-+version 5.12
-+version 5.13" >/dev/null
- then
-- # 5.9.1 or 5.9.2 or 5.9.3 or 5.10 or 5.11 or 5.12
-+ # 5.9.1 or 5.9.2 or 5.9.3 or 5.10 or 5.11 or 5.12 or 5.13
- maxima -d | grep -F 'maxima-htmldir=' | sed -e \
- 's/maxima-htmldir=/"/' -e 's|$|/maxima_toc.html"|'
-diff -U2 --recursive TeXmacs-1.0.6.10-src.orig/plugins/maxima/bin/tm_maxima TeXmacs-1.0.6.10-src/plugins/maxima/bin/tm_maxima
---- TeXmacs-1.0.6.10-src.orig/plugins/maxima/bin/tm_maxima 2007-05-16 00:54:34.000000000 +0700
-+++ TeXmacs-1.0.6.10-src/plugins/maxima/bin/tm_maxima 2007-08-29 00:23:07.000000000 +0700
-@@ -3,7 +3,4 @@
- TEXMACS_MAXIMA_PATH="$TEXMACS_PATH/plugins/maxima/lisp"
- export TEXMACS_MAXIMA_PATH
--PATH="/cygdrive/c/Program Files/Maxima-5.9.2/bin:$PATH"
--PATH="/cygdrive/c/Program Files/Maxima-5.9.3/bin:$PATH"
--export PATH
-
- case $1 in
-@@ -21,13 +18,7 @@
- 5.9.1.1* | 5.9.2* | 5.9.3*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.9.2.lisp";;
- 5.10.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.10.0.lisp";;
-- 5.11.* | 5.12.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp";;
-+ 5.11.* | 5.12.* | 5.13.*) exec maxima -u $1 -l $2 -p "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp";;
- cygwin)
-- CYGWIN_ROOT="C:\cygwin"
-- CYGWIN_TEXMACS_HOME=`echo $TEXMACS_HOME_PATH | sed 's|/|\\\\|g'`
-- export CYGWIN_TEXMACS_HOME
-- cp -f "$TEXMACS_MAXIMA_PATH/texmacs-maxima-5.9.2.lisp" \
-- "$CYGWIN_ROOT$CYGWIN_TEXMACS_HOME\system\tmp"
-- exec maxima.bat -p \
-- "$CYGWIN_ROOT$CYGWIN_TEXMACS_HOME\system\tmp\texmacs-maxima-5.9.2.lisp";;
-+ exec maxima.bat -p "`echo $TEXMACS_MAXIMA_PATH/texmacs-maxima-5.11.0.lisp|cygpath --windows -f -`";;
- *) echo -e "\2latex:\\red Unsupported version of maxima: $1\5"
- esac
diff --git a/app-office/texmacs/metadata.xml b/app-office/texmacs/metadata.xml
deleted file mode 100644
index 849d5af06..000000000
--- a/app-office/texmacs/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>text-markup</herd>
-<longdescription lang="en">
-GNU TeXmacs is a WYSIWYG text processor with an excellent quality
-of both texts and mathematical formulae. It can import and export
-LaTeX and html. It is used as a GUI for a number of computer algebra
-and numerical mathematics systems.
-</longdescription>
-</pkgmetadata>
diff --git a/app-office/texmacs/texmacs-1.0.6.10-r1.ebuild b/app-office/texmacs/texmacs-1.0.6.10-r1.ebuild
deleted file mode 100644
index a1d63f3fc..000000000
--- a/app-office/texmacs/texmacs-1.0.6.10-r1.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-# although flag-o-matic functions in portage, we should inherit it
-inherit flag-o-matic eutils
-
-MY_P=${P/tex/TeX}-src
-S=${WORKDIR}/${MY_P}
-
-DESCRIPTION="GNU TeXmacs is a free GUI scientific editor, inspired by TeX and GNU Emacs."
-SRC_URI="ftp://ftp.texmacs.org/pub/TeXmacs/targz/${MY_P}.tar.gz
- ftp://ftp.texmacs.org/pub/TeXmacs/targz/TeXmacs-600dpi-fonts.tar.gz"
-HOMEPAGE="http://www.texmacs.org/"
-LICENSE="GPL-2"
-
-SLOT="0"
-IUSE="spell static"
-# TeXmacs 1.0.X-r? -> stable release, TeXmacs 1.0.X.Y -> development release
-KEYWORDS="~x86 ~amd64"
-
-RDEPEND="virtual/tetex
- >=dev-scheme/guile-1.4
- >=sys-apps/sed-4
- media-libs/freetype
- x11-libs/libX11
- x11-libs/libICE
- media-libs/imlib2
- spell? ( || ( >=app-text/ispell-3.2 >=app-text/aspell-0.5 ) )"
-
-DEPEND="${RDEPEND}
- x11-proto/xproto
- virtual/ghostscript"
-
-pkg_setup() {
- if has_version ">=dev-scheme/guile-1.8"; then
- if ! built_with_use dev-scheme/guile deprecated; then
- eerror "Please re-emerge dev-scheme/guile with the USE flag +deprecated"
- die "Bad guile version"
- fi
- fi
-}
-
-src_unpack() {
- unpack ${A}
- epatch "${FILESDIR}/${PN}-maxima-5.13.0.patch"
-}
-
-src_compile() {
-
- # we're not trusting texmacs optimisations here, so
- # we only want the following two
- strip-flags
- append-flags -fno-default-inline
- append-flags -fno-inline
-
- econf || die
- # and now replace the detected optimisations with our safer ones
- sed -i "s:\(^CXXOPTIMIZE = \).*:\1${CXXFLAGS}:" src/common.makefile
- # emake b0rked
- if use static ; then
- emake -j1 STATIC_TEXMACS || die
- else
- emake -j1 || die
- fi
-
-}
-
-
-src_install() {
-
- make DESTDIR=${D} install || die
- dodoc COMPILE
-
- insinto /usr/share/applications
- doins ${FILESDIR}/TeXmacs.desktop
-
- # now install the fonts
- cd ${WORKDIR}
- dodir /usr/share/texmf
- cp -r fonts ${D}/usr/share/texmf/
-
-}
diff --git a/app-office/texmacs/texmacs-1.0.6.11.ebuild b/app-office/texmacs/texmacs-1.0.6.11.ebuild
deleted file mode 100644
index 6456da02e..000000000
--- a/app-office/texmacs/texmacs-1.0.6.11.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-# although flag-o-matic functions in portage, we should inherit it
-inherit flag-o-matic eutils
-
-MY_P=${P/tex/TeX}-src
-S=${WORKDIR}/${MY_P}
-
-DESCRIPTION="GNU TeXmacs is a free GUI scientific editor, inspired by TeX and GNU Emacs."
-SRC_URI="ftp://ftp.texmacs.org/pub/TeXmacs/targz/${MY_P}.tar.gz
- ftp://ftp.texmacs.org/pub/TeXmacs/targz/TeXmacs-600dpi-fonts.tar.gz"
-HOMEPAGE="http://www.texmacs.org/"
-LICENSE="GPL-2"
-
-SLOT="0"
-IUSE="spell static"
-# TeXmacs 1.0.X-r? -> stable release, TeXmacs 1.0.X.Y -> development release
-KEYWORDS="~x86 ~amd64"
-
-RDEPEND="virtual/tetex
- >=dev-scheme/guile-1.4
- >=sys-apps/sed-4
- media-libs/freetype
- x11-libs/libX11
- x11-libs/libICE
- media-libs/imlib2
- spell? ( || ( >=app-text/ispell-3.2 >=app-text/aspell-0.5 ) )"
-
-DEPEND="${RDEPEND}
- x11-proto/xproto
- virtual/ghostscript"
-
-pkg_setup() {
- if has_version ">=dev-scheme/guile-1.8"; then
- if ! built_with_use dev-scheme/guile deprecated; then
- eerror "Please re-emerge dev-scheme/guile with the USE flag +deprecated"
- die "Bad guile version"
- fi
- fi
-}
-
-src_unpack() {
- unpack ${A}
- epatch "${FILESDIR}/${P}-maxima-5.13.0.patch"
-}
-
-src_compile() {
-
- # we're not trusting texmacs optimisations here, so
- # we only want the following two
- strip-flags
- append-flags -fno-default-inline
- append-flags -fno-inline
-
- econf || die
- # and now replace the detected optimisations with our safer ones
- sed -i "s:\(^CXXOPTIMIZE = \).*:\1${CXXFLAGS}:" src/common.makefile
- # emake b0rked
- if use static ; then
- emake -j1 STATIC_TEXMACS || die
- else
- emake -j1 || die
- fi
-
-}
-
-
-src_install() {
-
- make DESTDIR=${D} install || die
- dodoc COMPILE
-
- insinto /usr/share/applications
- doins ${FILESDIR}/TeXmacs.desktop
-
- # now install the fonts
- cd ${WORKDIR}
- dodir /usr/share/texmf
- cp -r fonts ${D}/usr/share/texmf/
-
-}
diff --git a/dev-lang/aldor/ChangeLog b/dev-lang/aldor/ChangeLog
deleted file mode 100644
index 1c08dd798..000000000
--- a/dev-lang/aldor/ChangeLog
+++ /dev/null
@@ -1,15 +0,0 @@
-# ChangeLog for sci-mathematics/yorick
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*aldor-1.1.0_rc (20 Apr 2007)
-
- 20 Apr 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +aldor-1.1.0_rc.ebuild:
- Version bump
-
-*aldor-1.0.3 (15 Feb 2007)
-
- 15 Feb 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- +metadata.xml, +aldor-1.0.3.ebuild:
- Initial import, bug 131590
diff --git a/dev-lang/aldor/Manifest b/dev-lang/aldor/Manifest
deleted file mode 100644
index e3f5b7355..000000000
--- a/dev-lang/aldor/Manifest
+++ /dev/null
@@ -1,29 +0,0 @@
-DIST aldor-linux-i386-1.1.0-rc.bin 4466200 RMD160 f37ead9bd8ae32513b9de9b9ccf86eef8f858d22 SHA1 78c1a69d4fcc9ccbab46ff31f3bbbdb61418b699 SHA256 26d78e921b9fdb661c16cfee12a32ce153121ef185862f429b2ad640d4374578
-DIST aldor-linux-i386-glibc2.3-1.0.3.bin 21051230 RMD160 dc5542be2b6ee1cd7e1553f820a4f0790e9dec46 SHA1 583b774ddd47e0f8f436aaf84a83c018fd858571 SHA256 0e6dbc8f6c59c9ceea981101570962281312329b119d7892bf834bf6e3905613
-DIST aldor.el.nw 51482 RMD160 8b785abf23ea5cd1107d1a05b187723f81b04559 SHA1 628ff6f36d720e4a32d72125d3559e4da498f750 SHA256 c6c80e1fd32b36555fe3d90e9cadb48795907514129b6c23406f720db18bd43e
-DIST aldorug.pdf.gz 767850 RMD160 7b2f9496b303caee0642ea74e58524699b122f19 SHA1 02e89472a34fe974900a529c644c093c55452793 SHA256 dec98eed7c9065c9233d2eb3e30e5dc98a2128709d541f7b626d086979b80c3a
-DIST algebra.dvi.gz 224384 RMD160 5c02725edd5487ce0ed559ec9d70ac8b2dcafcda SHA1 5cc216b314c06bfa4868385dc36ef19b1e1b8520 SHA256 bce290c458dabb80fd390729dd0da5738694124d8571a6a941c087a71d14da38
-DIST libaldor.pdf.gz 434487 RMD160 c7d7130eca8d820a291786f11288deefbe1a672e SHA1 e231e2171b5906ba0812508d548c759f235625b5 SHA256 57371d1bd6031c350783e063533ba9ba1d82e681dca54fa3b4de42a339c9a668
-DIST tutorial.pdf.gz 164786 RMD160 1ceea46bd6a7b22003ff06842d656b0d57d011bf SHA1 62a4d224a60b6abc1fc8d49ac0f2a41860f001da SHA256 a0339b7c59632c8825e26603330b5a4010aeeb843ddad06c6b54d029519c7e65
-EBUILD aldor-1.0.3.ebuild 2573 RMD160 db3f53c1d473567a00ee1df2cc9a7d7f126084b2 SHA1 71781dafb9869dab3230aa538ee10547daa4cfa5 SHA256 046c82bc21fedfda25b6bf3d68229ce357b0f294ad1d5a67f07d7682e50d6e0a
-MD5 69eb0b18d7fd61753f009ce72649c907 aldor-1.0.3.ebuild 2573
-RMD160 db3f53c1d473567a00ee1df2cc9a7d7f126084b2 aldor-1.0.3.ebuild 2573
-SHA256 046c82bc21fedfda25b6bf3d68229ce357b0f294ad1d5a67f07d7682e50d6e0a aldor-1.0.3.ebuild 2573
-EBUILD aldor-1.1.0_rc.ebuild 2312 RMD160 0f307041c1f7bb9f59115b15e5c63e262b6aba79 SHA1 c4e67a107c2fbab6ace8b64969b8902c401a6129 SHA256 d73e5097f0d1e306d3902a356ffb475e9dc79e631baac9960219b5d03c18c7dc
-MD5 55ba3fc7c4c56aa02558a0045db12d45 aldor-1.1.0_rc.ebuild 2312
-RMD160 0f307041c1f7bb9f59115b15e5c63e262b6aba79 aldor-1.1.0_rc.ebuild 2312
-SHA256 d73e5097f0d1e306d3902a356ffb475e9dc79e631baac9960219b5d03c18c7dc aldor-1.1.0_rc.ebuild 2312
-MISC ChangeLog 397 RMD160 bb52cc35028e9da2a973e947724e19a3a15d5514 SHA1 220e6bb5cc67a1accc235e3a91e3c3a697240408 SHA256 14f90ddc3f1e71c779dbd3ce8ebc7fa719db151af92d2599a899f8114dc3a0ed
-MD5 d042b05707c3d58e05622196d00ccb18 ChangeLog 397
-RMD160 bb52cc35028e9da2a973e947724e19a3a15d5514 ChangeLog 397
-SHA256 14f90ddc3f1e71c779dbd3ce8ebc7fa719db151af92d2599a899f8114dc3a0ed ChangeLog 397
-MISC metadata.xml 811 RMD160 f7b329f9abd26f80f54235f2ad214bd4d8fd6d92 SHA1 e95d400caa56b900562d16d943ab8da837c281ed SHA256 005c18ae92ac4022daa3da7381a2eb712c28b6444f853c1a889cbc4750d8f9ef
-MD5 09a2b913ded6f7853e0abcc74e30fac6 metadata.xml 811
-RMD160 f7b329f9abd26f80f54235f2ad214bd4d8fd6d92 metadata.xml 811
-SHA256 005c18ae92ac4022daa3da7381a2eb712c28b6444f853c1a889cbc4750d8f9ef metadata.xml 811
-MD5 74d82b566e66bfcf2c9039d066ebf076 files/digest-aldor-1.0.3 1401
-RMD160 99ad9d27e853e4dd87c0a497ee5fd1142cdac551 files/digest-aldor-1.0.3 1401
-SHA256 d44f933666d514e9cacfd6ec2bc3a1ac66b9cf6643a2788c120db1d5e12f5083 files/digest-aldor-1.0.3 1401
-MD5 66740350a9acc3b993e8960074620858 files/digest-aldor-1.1.0_rc 1380
-RMD160 4827626d37858c3f49ed6a32ee278ece41faa0b1 files/digest-aldor-1.1.0_rc 1380
-SHA256 515f6263e2a6430e34be52b175093fc8b86bc5f8ff7e69980d951b9756278840 files/digest-aldor-1.1.0_rc 1380
diff --git a/dev-lang/aldor/aldor-1.0.3.ebuild b/dev-lang/aldor/aldor-1.0.3.ebuild
deleted file mode 100644
index a07ff563e..000000000
--- a/dev-lang/aldor/aldor-1.0.3.ebuild
+++ /dev/null
@@ -1,101 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit elisp-common
-
-DESCRIPTION="Aldor - programming language with a two-level type system"
-HOMEPAGE="http://www.aldor.org/"
-LICENSE="aldor-public-license"
-SLOT="0"
-KEYWORDS="~x86 -*"
-IUSE="doc emacs"
-ALDOR="${PN}-linux-i386-glibc2.3-${PV}.bin"
-DOC1="aldorug.pdf.gz"
-DOC2="libaldor.pdf.gz"
-DOC3="tutorial.pdf.gz"
-URL4="ftp://ftp-sop.inria.fr/cafe/software/algebra"
-DOC4="algebra.dvi.gz"
-MODE_URL="http://www.risc.uni-linz.ac.at/people/hemmecke/aldor"
-MODE="aldor.el.nw"
-SRC_URI="${ALDOR}
- doc? ( http://www.aldor.org/docs/${DOC1}
- http://www.aldor.org/docs/${DOC2}
- http://www.aldor.org/docs/${DOC3}
- ${URL4}/${DOC4} )
- emacs? ( ${MODE_URL}/${MODE} )"
-RESTRICT="fetch"
-RDEPEND="emacs? ( virtual/emacs )"
-DEPEND="${RDEPEND}
- doc? ( virtual/tetex )
- emacs? ( app-text/noweb )"
-S="${WORKDIR}"
-
-pkg_nofetch() {
- local PLURAL
- PLURAL=""
- einfo "Please visit ${HOMEPAGE} and read the license"
- einfo "If you accept it, download ${SRC_URI}"
- if use doc; then
- einfo "Also download ${DOC1}, ${DOC2}, ${DOC3}"
- einfo "Then go to ${URL4} and download ${DOC4}"
- PLURAL="s"
- fi
- if use emacs; then
- einfo "Then go to ${MODE_URL} and download ${MODE}"
- PLURAL="s"
- fi
- einfo "Then move the downloaded file${PLURAL} to ${DISTDIR}"
-}
-
-src_compile() {
- if use emacs; then
- notangle "${DISTDIR}/aldor.el.nw" > aldor.el
- notangle -Rinit.el "${DISTDIR}/aldor.el.nw" | \
- sed -e '1s/^.*$/;; aldor mode/' > 64aldor-gentoo.el
- if use doc; then
- noweave "${DISTDIR}/aldor.el.nw" > aldor-mode.tex
- pdflatex aldor-mode.tex
- pdflatex aldor-mode.tex
- fi
- fi
- if use doc; then
- dvipdfm algebra.dvi
- fi
-}
-
-src_install() {
- local LINE="205"
- dodir /opt
- cd "${D}/opt"
- tail -n +"${LINE}" "${DISTDIR}/${ALDOR}" | tar xzf -
- cd "${D}/opt/${PN}/linux/${PV}/bin"
- cd "${S}"
- cat > 64aldor <<EOF
-ALDORROOT=/opt/${PN}/linux/${PV}
-PATH=/opt/${PN}/linux/${PV}/bin
-EOF
- doenvd 64aldor
- if use doc; then
- insinto "/usr/share/doc/aldor-${PV}"
- doins *.pdf
- fi
- if use emacs; then
- elisp-site-file-install aldor.el
- elisp-site-file-install 64aldor-gentoo.el
- fi
-}
-
-pkg_postinst() {
- mkdir "${ROOT}opt/${PN}/${PV}"
- ln -s "${ROOT}opt/${PN}/linux/${PV}" "${ROOT}opt/${PN}/${PV}/linux"
- ln -s `which ar` "${ROOT}opt/${PN}/linux/${PV}/bin/uniar"
- use emacs && elisp-site-regen
-}
-
-pkg_prerm() {
- rm -f "${ROOT}opt/${PN}/${PV}/linux"
- rmdir "${ROOT}opt/${PN}/${PV}"
- rm -f "${ROOT}opt/${PN}/linux/${PV}/bin/uniar"
- [ -f "${SITELISP}/site-gentoo.el" ] && elisp-site-regen
-}
diff --git a/dev-lang/aldor/aldor-1.1.0_rc.ebuild b/dev-lang/aldor/aldor-1.1.0_rc.ebuild
deleted file mode 100644
index e47dada02..000000000
--- a/dev-lang/aldor/aldor-1.1.0_rc.ebuild
+++ /dev/null
@@ -1,95 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit elisp-common
-
-DESCRIPTION="Aldor - programming language with a two-level type system"
-HOMEPAGE="http://www.aldor.org/"
-LICENSE="aldor-public-license"
-SLOT="0"
-KEYWORDS="~x86 -*"
-IUSE="doc emacs"
-PV0="${PV/_rc/}"
-ALDOR="${PN}-linux-i386-${PV/_rc/-rc}.bin"
-DOC1="aldorug.pdf.gz"
-DOC2="libaldor.pdf.gz"
-DOC3="tutorial.pdf.gz"
-URL4="ftp://ftp-sop.inria.fr/cafe/software/algebra"
-DOC4="algebra.dvi.gz"
-MODE_URL="http://www.risc.uni-linz.ac.at/people/hemmecke/aldor"
-MODE="aldor.el.nw"
-SRC_URI="${ALDOR}
- doc? ( ${DOC1} ${DOC2} ${DOC3} ${DOC4} )
- emacs? ( ${MODE} )"
-RESTRICT="fetch"
-RDEPEND="emacs? ( virtual/emacs )"
-DEPEND="${RDEPEND}
- doc? ( virtual/tetex )
- emacs? ( app-text/noweb )"
-S="${WORKDIR}"
-
-pkg_nofetch() {
- local PLURAL
- PLURAL=""
- einfo "Please visit ${HOMEPAGE} and read the license"
- einfo "If you accept it, download ${SRC_URI}"
- if use doc; then
- einfo "Also download ${DOC1}, ${DOC2}, ${DOC3}"
- einfo "Then go to ${URL4} and download ${DOC4}"
- PLURAL="s"
- fi
- if use emacs; then
- einfo "Then go to ${MODE_URL} and download ${MODE}"
- PLURAL="s"
- fi
- einfo "Then move the downloaded file${PLURAL} to ${DISTDIR}"
-}
-
-src_compile() {
- if use emacs; then
- notangle "${DISTDIR}/aldor.el.nw" > aldor.el
- notangle -Rinit.el "${DISTDIR}/aldor.el.nw" | \
- sed -e '1s/^.*$/;; aldor mode/' > 64aldor-gentoo.el
- if use doc; then
- noweave "${DISTDIR}/aldor.el.nw" > aldor-mode.tex
- pdflatex aldor-mode.tex
- pdflatex aldor-mode.tex
- fi
- fi
- if use doc; then
- dvipdfm algebra.dvi
- fi
-}
-
-src_install() {
- local LINE="206"
- dodir /opt
- cd "${D}/opt"
- tail -n +"${LINE}" "${DISTDIR}/${ALDOR}" | tar xzf -
- cd "${S}"
- cat > 64aldor <<EOF
-ALDORROOT=/opt/${PN}/linux/${PV0}
-PATH=/opt/${PN}/linux/${PV0}/bin
-EOF
- doenvd 64aldor
- dodir "/opt/${PN}/${PV0}"
- dosym "/opt/${PN}/linux/${PV0}" "/opt/${PN}/${PV0}/linux"
- dosym `which ar` "/opt/${PN}/linux/${PV0}/bin/uniar"
- if use doc; then
- insinto "/usr/share/doc/aldor-${PV}"
- doins *.pdf
- fi
- if use emacs; then
- elisp-site-file-install aldor.el
- elisp-site-file-install 64aldor-gentoo.el
- fi
-}
-
-pkg_postinst() {
- use emacs && elisp-site-regen
-}
-
-pkg_prerm() {
- [ -f "${SITELISP}/site-gentoo.el" ] && elisp-site-regen
-}
diff --git a/dev-lang/aldor/files/digest-aldor-1.0.3 b/dev-lang/aldor/files/digest-aldor-1.0.3
deleted file mode 100644
index f913dbccb..000000000
--- a/dev-lang/aldor/files/digest-aldor-1.0.3
+++ /dev/null
@@ -1,18 +0,0 @@
-MD5 1ffa961ea47420e1554a68440acede9f aldor-linux-i386-glibc2.3-1.0.3.bin 21051230
-RMD160 dc5542be2b6ee1cd7e1553f820a4f0790e9dec46 aldor-linux-i386-glibc2.3-1.0.3.bin 21051230
-SHA256 0e6dbc8f6c59c9ceea981101570962281312329b119d7892bf834bf6e3905613 aldor-linux-i386-glibc2.3-1.0.3.bin 21051230
-MD5 1f453aa0239f6475bffad19cda3bfb21 aldor.el.nw 51482
-RMD160 8b785abf23ea5cd1107d1a05b187723f81b04559 aldor.el.nw 51482
-SHA256 c6c80e1fd32b36555fe3d90e9cadb48795907514129b6c23406f720db18bd43e aldor.el.nw 51482
-MD5 46fca63a09f483edfbddd2df1c61c94d aldorug.pdf.gz 767850
-RMD160 7b2f9496b303caee0642ea74e58524699b122f19 aldorug.pdf.gz 767850
-SHA256 dec98eed7c9065c9233d2eb3e30e5dc98a2128709d541f7b626d086979b80c3a aldorug.pdf.gz 767850
-MD5 53ad36c07dda65a4a2a5624e034d216b algebra.dvi.gz 224384
-RMD160 5c02725edd5487ce0ed559ec9d70ac8b2dcafcda algebra.dvi.gz 224384
-SHA256 bce290c458dabb80fd390729dd0da5738694124d8571a6a941c087a71d14da38 algebra.dvi.gz 224384
-MD5 6e8c19abd8152ec4ac3944f8cee90679 libaldor.pdf.gz 434487
-RMD160 c7d7130eca8d820a291786f11288deefbe1a672e libaldor.pdf.gz 434487
-SHA256 57371d1bd6031c350783e063533ba9ba1d82e681dca54fa3b4de42a339c9a668 libaldor.pdf.gz 434487
-MD5 30bb611ea4b9e772f113cd82e50cc6ec tutorial.pdf.gz 164786
-RMD160 1ceea46bd6a7b22003ff06842d656b0d57d011bf tutorial.pdf.gz 164786
-SHA256 a0339b7c59632c8825e26603330b5a4010aeeb843ddad06c6b54d029519c7e65 tutorial.pdf.gz 164786
diff --git a/dev-lang/aldor/files/digest-aldor-1.1.0_rc b/dev-lang/aldor/files/digest-aldor-1.1.0_rc
deleted file mode 100644
index 7d465f5e7..000000000
--- a/dev-lang/aldor/files/digest-aldor-1.1.0_rc
+++ /dev/null
@@ -1,18 +0,0 @@
-MD5 250c0d826773bb83e4b50c5416f65cf5 aldor-linux-i386-1.1.0-rc.bin 4466200
-RMD160 f37ead9bd8ae32513b9de9b9ccf86eef8f858d22 aldor-linux-i386-1.1.0-rc.bin 4466200
-SHA256 26d78e921b9fdb661c16cfee12a32ce153121ef185862f429b2ad640d4374578 aldor-linux-i386-1.1.0-rc.bin 4466200
-MD5 1f453aa0239f6475bffad19cda3bfb21 aldor.el.nw 51482
-RMD160 8b785abf23ea5cd1107d1a05b187723f81b04559 aldor.el.nw 51482
-SHA256 c6c80e1fd32b36555fe3d90e9cadb48795907514129b6c23406f720db18bd43e aldor.el.nw 51482
-MD5 46fca63a09f483edfbddd2df1c61c94d aldorug.pdf.gz 767850
-RMD160 7b2f9496b303caee0642ea74e58524699b122f19 aldorug.pdf.gz 767850
-SHA256 dec98eed7c9065c9233d2eb3e30e5dc98a2128709d541f7b626d086979b80c3a aldorug.pdf.gz 767850
-MD5 53ad36c07dda65a4a2a5624e034d216b algebra.dvi.gz 224384
-RMD160 5c02725edd5487ce0ed559ec9d70ac8b2dcafcda algebra.dvi.gz 224384
-SHA256 bce290c458dabb80fd390729dd0da5738694124d8571a6a941c087a71d14da38 algebra.dvi.gz 224384
-MD5 6e8c19abd8152ec4ac3944f8cee90679 libaldor.pdf.gz 434487
-RMD160 c7d7130eca8d820a291786f11288deefbe1a672e libaldor.pdf.gz 434487
-SHA256 57371d1bd6031c350783e063533ba9ba1d82e681dca54fa3b4de42a339c9a668 libaldor.pdf.gz 434487
-MD5 30bb611ea4b9e772f113cd82e50cc6ec tutorial.pdf.gz 164786
-RMD160 1ceea46bd6a7b22003ff06842d656b0d57d011bf tutorial.pdf.gz 164786
-SHA256 a0339b7c59632c8825e26603330b5a4010aeeb843ddad06c6b54d029519c7e65 tutorial.pdf.gz 164786
diff --git a/dev-lang/aldor/metadata.xml b/dev-lang/aldor/metadata.xml
deleted file mode 100644
index 7b8af4e8c..000000000
--- a/dev-lang/aldor/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-<email>A.G.Grozin@inp.nsk.su</email>
-<name>Andrey Grozin</name>
-</maintainer>
-<longdescription lang="en">
-From a technical point of perspective, Aldor is a type-complete,
-strongly-typed, imperative programming language with a two-level
-object model of categories and domains (similar to the concept of
-interfaces and classes in Java). Types and functions are first class
-entities allowing them to be constructed and manipulated within
-Aldor programs just like any other value. Pervasive use of dependent
-types allows static checking of dynamic objects and provides
-object-oriented features such as parametric polymorphism.
-</longdescription>
-</pkgmetadata>
diff --git a/dev-python/asciidata/ChangeLog b/dev-python/asciidata/ChangeLog
deleted file mode 100644
index d04297436..000000000
--- a/dev-python/asciidata/ChangeLog
+++ /dev/null
@@ -1,9 +0,0 @@
-# ChangeLog for dev-python/asciidata
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*asciidata-1.0 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt>
- +asciidata-1.0.ebuild, +metadata.xml
- Initial import.
diff --git a/dev-python/asciidata/Manifest b/dev-python/asciidata/Manifest
deleted file mode 100644
index 0cddea650..000000000
--- a/dev-python/asciidata/Manifest
+++ /dev/null
@@ -1,17 +0,0 @@
-DIST asciidata-1.0.tar.gz 208115 RMD160 55f090dbd1b90837206f7e9ce68b86f2b13a0803 SHA1 108ba39cb919ddb199270db1f89580dfbb3f7f04 SHA256 20d820409ba0b7debbd93e8dd79a9566626513428fd18949ad789e032dccf05a
-DIST asciidata_1.0.tar.gz 104648 RMD160 2066ca255272459790a5dc16a61174f82020b138 SHA1 6425a4eb781eb051522f10aafe854369b104a4a7 SHA256 5a2dabe1e2135db4a04f7a9d8e7eaf952356da55a8498a261feb0a437e914dfc
-EBUILD asciidata-1.0.ebuild 620 RMD160 d9f98eb214ef80f12db5a03ecebfb80e886e0701 SHA1 4bc173222eea09bd28271324a01d8bb452a268fd SHA256 b4e4e112fefd5476dc31bbf6715e7f1c38bcb75c41db53a2bcd8230137e79278
-MD5 68a1aadf5f35c91db9489a556118aa10 asciidata-1.0.ebuild 620
-RMD160 d9f98eb214ef80f12db5a03ecebfb80e886e0701 asciidata-1.0.ebuild 620
-SHA256 b4e4e112fefd5476dc31bbf6715e7f1c38bcb75c41db53a2bcd8230137e79278 asciidata-1.0.ebuild 620
-MISC ChangeLog 257 RMD160 ee69aa2ed9db02e9f388eb47ee3030237f4d3af6 SHA1 17f9a2304607c0c7e48687a34170f48ff1960a70 SHA256 0dbbc11cf469c0f1c4543f78782d4faf951aad8d4cbc8cfea237f139c00313d4
-MD5 c85c9fee9a15fa71fb4a8b8230309b1e ChangeLog 257
-RMD160 ee69aa2ed9db02e9f388eb47ee3030237f4d3af6 ChangeLog 257
-SHA256 0dbbc11cf469c0f1c4543f78782d4faf951aad8d4cbc8cfea237f139c00313d4 ChangeLog 257
-MISC metadata.xml 450 RMD160 f1fd6a7506bf4680e443c4444e838c920a47fab8 SHA1 59d2acea5be821cfee9f363273ad9b7822a989b6 SHA256 b9d5f1a73e94560204c68661bb3b14507a68d3058d78cb65ee121e87f7462557
-MD5 da8dd5fbd9fe9da737528aa1e2dd5b85 metadata.xml 450
-RMD160 f1fd6a7506bf4680e443c4444e838c920a47fab8 metadata.xml 450
-SHA256 b9d5f1a73e94560204c68661bb3b14507a68d3058d78cb65ee121e87f7462557 metadata.xml 450
-MD5 0d56c118dff79e4aa377709c346b4eab files/digest-asciidata-1.0 482
-RMD160 b12274ffb6ba0d7a35e9693ca3428f28acc27081 files/digest-asciidata-1.0 482
-SHA256 b994c4295cecd902d9c150c315a7f2eeaa2d7223046af8f37cfa2658fb3edd59 files/digest-asciidata-1.0 482
diff --git a/dev-python/asciidata/asciidata-1.0.ebuild b/dev-python/asciidata/asciidata-1.0.ebuild
deleted file mode 100644
index b31b37192..000000000
--- a/dev-python/asciidata/asciidata-1.0.ebuild
+++ /dev/null
@@ -1,21 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit distutils
-
-DESCRIPTION="Python module to handle ASCII tables"
-SRC_URI="http://www.stecf.org/software/PYTHONtools/astro${PN}/source/${P}.tar.gz
- doc? http://www.stecf.org/software/PYTHONtools/astro${PN}/manual/${PN}_${PV}.tar.gz"
-HOMEPAGE="http://www.stecf.org/software/astroasciidata/index.html"
-DEPEND=">=dev-lang/python-2.2
- dev-python/numarray"
-IUSE="doc"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-LICENSE="GPL-2"
-
-src_install() {
- distutils_src_install
- use doc && dohtml ${WORKDIR}/asciidata/*
-}
diff --git a/dev-python/asciidata/files/digest-asciidata-1.0 b/dev-python/asciidata/files/digest-asciidata-1.0
deleted file mode 100644
index cadab43a1..000000000
--- a/dev-python/asciidata/files/digest-asciidata-1.0
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 9a8c0fa134bb1ccd8b3667ee4b248224 asciidata-1.0.tar.gz 208115
-RMD160 55f090dbd1b90837206f7e9ce68b86f2b13a0803 asciidata-1.0.tar.gz 208115
-SHA256 20d820409ba0b7debbd93e8dd79a9566626513428fd18949ad789e032dccf05a asciidata-1.0.tar.gz 208115
-MD5 bfe62589618c229b6a8c71e558b7088f asciidata_1.0.tar.gz 104648
-RMD160 2066ca255272459790a5dc16a61174f82020b138 asciidata_1.0.tar.gz 104648
-SHA256 5a2dabe1e2135db4a04f7a9d8e7eaf952356da55a8498a261feb0a437e914dfc asciidata_1.0.tar.gz 104648
diff --git a/dev-python/asciidata/metadata.xml b/dev-python/asciidata/metadata.xml
deleted file mode 100644
index 4f6d8e18c..000000000
--- a/dev-python/asciidata/metadata.xml
+++ /dev/null
@@ -1,13 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
- AsciiData is a Python module to handle ASCII tables. With this
- module it is possible to:
- * read ASCII tables;
- * access its elements for reading and writing;
- * save the ASCII table back to a file;
- * delete/add rows and columns.
-</longdescription>
-</pkgmetadata>
diff --git a/dev-tcltk/tkimg/ChangeLog b/dev-tcltk/tkimg/ChangeLog
deleted file mode 100644
index ff524eaed..000000000
--- a/dev-tcltk/tkimg/ChangeLog
+++ /dev/null
@@ -1,17 +0,0 @@
-# ChangeLog for dev-tcltk/tkimg
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org> tkimg-1.3.ebuild:
- cleaning
-
-*tkimg-1.3 (14 Sep 2006)
-
- 14 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- +tkimg-1.3.ebuild, +metadata.xml,
- +files/tkimg-1.3-m4.patch
- +files/tkimg-1.3-makedeps.patch
- +files/tkimg-1.3-syslibs.patch
- +files/tkimg-1.3-warnings.patch
- Initial import.
-
diff --git a/dev-tcltk/tkimg/Manifest b/dev-tcltk/tkimg/Manifest
deleted file mode 100644
index f26f88edf..000000000
--- a/dev-tcltk/tkimg/Manifest
+++ /dev/null
@@ -1,32 +0,0 @@
-AUX tkimg-1.3-m4.patch 9543 RMD160 e3a156f8a87a6f6f7967b81e73a0bb98a78176c3 SHA1 d66f86b79101765e2f9a7fd072011638a0ddbad6 SHA256 409b9877daf172113052a689a7eeb9a9226965356a8b9ddfa0947bca0d8f08d9
-MD5 e6ea0a8f9660edc6d04d527e4a32d5c7 files/tkimg-1.3-m4.patch 9543
-RMD160 e3a156f8a87a6f6f7967b81e73a0bb98a78176c3 files/tkimg-1.3-m4.patch 9543
-SHA256 409b9877daf172113052a689a7eeb9a9226965356a8b9ddfa0947bca0d8f08d9 files/tkimg-1.3-m4.patch 9543
-AUX tkimg-1.3-makedeps.patch 3022 RMD160 f04e0912380e2669f0221e6eae1372b886dd3c9b SHA1 229b69285bb035e4bc0dc8b4d9d059cf139668ff SHA256 5b359d562d793e65791ae6dceb7eeae0d740b471b8362bc02515c9fa0ad19bd6
-MD5 2c93549a4d62f9dff4896ee7d651afba files/tkimg-1.3-makedeps.patch 3022
-RMD160 f04e0912380e2669f0221e6eae1372b886dd3c9b files/tkimg-1.3-makedeps.patch 3022
-SHA256 5b359d562d793e65791ae6dceb7eeae0d740b471b8362bc02515c9fa0ad19bd6 files/tkimg-1.3-makedeps.patch 3022
-AUX tkimg-1.3-syslibs.patch 12672 RMD160 c5f5f9a8275d92afaeb40f1a7584a0102d12ee08 SHA1 fde468d011e576854354a805ff5603df53a4042e SHA256 fcac1bf27bfb7e1adb8bbdb503c7449533c29de91bf5cfe1333dbea7017936a0
-MD5 9e46798d3b6f6cb8c68ce43b902fec02 files/tkimg-1.3-syslibs.patch 12672
-RMD160 c5f5f9a8275d92afaeb40f1a7584a0102d12ee08 files/tkimg-1.3-syslibs.patch 12672
-SHA256 fcac1bf27bfb7e1adb8bbdb503c7449533c29de91bf5cfe1333dbea7017936a0 files/tkimg-1.3-syslibs.patch 12672
-AUX tkimg-1.3-warnings.patch 833 RMD160 80f45f8d830a3b69dfd983a098ec000d48bbedf9 SHA1 fdb6f263416d0cefccbc5c2c5f3067c1753efd52 SHA256 51b907379959ccf6d474300ba801c722b0d316e88bf5b1c033049b554b3700c1
-MD5 afc27909d709928de78a38101ab8e8a1 files/tkimg-1.3-warnings.patch 833
-RMD160 80f45f8d830a3b69dfd983a098ec000d48bbedf9 files/tkimg-1.3-warnings.patch 833
-SHA256 51b907379959ccf6d474300ba801c722b0d316e88bf5b1c033049b554b3700c1 files/tkimg-1.3-warnings.patch 833
-DIST tkimg1.3.tar.bz2 2924740 RMD160 fb0992c72faeb80fc6aaa2ccb1f632087235ea9d SHA1 b2d97cf80f9cd457a194b0d2c4bd549a66783895 SHA256 3daebe7c4a3d15e175a0203ada94adc2b78403d164d9fe9797e274e6256fcf33
-EBUILD tkimg-1.3.ebuild 1055 RMD160 46c66f94e173de2f71147cbecda793e4936b1aa9 SHA1 c2de369e9eb9951f4f713ccea0cbf99aacb82fc0 SHA256 8a2cfdc1d15c14cf091bac3bbca69164d090d19d3e58ee13f04267a6b0e8fd54
-MD5 3b537baf10d602ac6802397fc02fd3ab tkimg-1.3.ebuild 1055
-RMD160 46c66f94e173de2f71147cbecda793e4936b1aa9 tkimg-1.3.ebuild 1055
-SHA256 8a2cfdc1d15c14cf091bac3bbca69164d090d19d3e58ee13f04267a6b0e8fd54 tkimg-1.3.ebuild 1055
-MISC ChangeLog 465 RMD160 36ba1d94f48b4c9681cdf35b8556bf3d734973e6 SHA1 d530c9f147987e157dce2e37dc88702940db456e SHA256 0cc94d33068e2ec2d3e1b860d4f9a027f9764f6566feac516caa6084dd1a0dd4
-MD5 cc21e611b1e4cf93477c628360a99d02 ChangeLog 465
-RMD160 36ba1d94f48b4c9681cdf35b8556bf3d734973e6 ChangeLog 465
-SHA256 0cc94d33068e2ec2d3e1b860d4f9a027f9764f6566feac516caa6084dd1a0dd4 ChangeLog 465
-MISC metadata.xml 252 RMD160 3ae378dbda1cda6f29fc8d12d7ed3043e1df5cbc SHA1 6283b36b1f69d450f2f77dd456acb17c83485b96 SHA256 57ba6f7e8d62b8c319f2e4e55658b3d134ff5223443e4383316a23d150b9232a
-MD5 e30ce6e29fbd12a5bcb830b6f4d6fc3a metadata.xml 252
-RMD160 3ae378dbda1cda6f29fc8d12d7ed3043e1df5cbc metadata.xml 252
-SHA256 57ba6f7e8d62b8c319f2e4e55658b3d134ff5223443e4383316a23d150b9232a metadata.xml 252
-MD5 6e7e97bbeceae8bb7cee43bfccefb3f6 files/digest-tkimg-1.3 232
-RMD160 383adb8a8f2acba3d08e47aa49a584d9bf580fe4 files/digest-tkimg-1.3 232
-SHA256 0ad113e1d6275507d981353e7c16f975e1af40d5789dcd90cea40eee1ed43fca files/digest-tkimg-1.3 232
diff --git a/dev-tcltk/tkimg/files/digest-tkimg-1.3 b/dev-tcltk/tkimg/files/digest-tkimg-1.3
deleted file mode 100644
index 8f249731c..000000000
--- a/dev-tcltk/tkimg/files/digest-tkimg-1.3
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 41c3fe4c9337fb2b334b415b7189f86e tkimg1.3.tar.bz2 2924740
-RMD160 fb0992c72faeb80fc6aaa2ccb1f632087235ea9d tkimg1.3.tar.bz2 2924740
-SHA256 3daebe7c4a3d15e175a0203ada94adc2b78403d164d9fe9797e274e6256fcf33 tkimg1.3.tar.bz2 2924740
diff --git a/dev-tcltk/tkimg/files/tkimg-1.3-m4.patch b/dev-tcltk/tkimg/files/tkimg-1.3-m4.patch
deleted file mode 100644
index d1814b649..000000000
--- a/dev-tcltk/tkimg/files/tkimg-1.3-m4.patch
+++ /dev/null
@@ -1,311 +0,0 @@
---- Makefile.in
-+++ Makefile.in
-@@ -117,12 +117,14 @@
- here=`pwd` ; \
- cd $$sub ; \
- $(MAKE) install \
-+ DESTDIR="" INSTALL_ROOT="" \
-+ libdir=$$here/Img/exec_prefix/lib \
- exec_prefix=$$here/Img/exec_prefix \
- prefix=$$here/Img/prefix \
- pkglibdir=$$here/Img/exec_prefix/lib/Img \
- ; \
- cd $$here ; \
-- cat Img/exec_prefix/lib/Img/pkgIndex.tcl >> pkgIndex.tcl ; \
-+ cat Img/exec_prefix/lib/Img/pkgIndex.tcl >> pkgIndex.tcl || :; \
- done
- mv pkgIndex.tcl Img/exec_prefix/lib/Img/pkgIndex.tcl
-
---- base/tclconfig/tcl.m4
-+++ base/tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- base/tkimg.h
-+++ base/tkimg.h
-@@ -22,6 +22,7 @@
- #define __TKIMG_H__
-
- #include <stdio.h> /* stdout, and other definitions */
-+#include <string.h>
- #include "tk.h"
-
- /*
---- libjpeg/tcl/configure
-+++ libjpeg/tcl/configure
-@@ -5319,14 +5319,14 @@
-
- case "$srcdir" in
- .) # No --srcdir option. We are building in place.
-- jpegdir=$srcdir/.. ;;
-+ jpegdir=`pwd`/.. ;;
- /*) # Absolute path.
- jpegdir=$srcdir/.. ;;
- *) # Relative path.
- jpegdir=../$ac_dots$srcdir/.. ;;
- esac
-
--mkdir libjpeg
-+mkdir -p libjpeg
- cd libjpeg
- env CC="$JPEG_CC" CFLAGS="$JPEG_CFLAGS" $jpegdir/configure
- cd ..
---- libjpeg/tcl/tclconfig/tcl.m4
-+++ libjpeg/tcl/tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- libpng/tcl/tclconfig/tcl.m4
-+++ libpng/tcl/tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- libtiff/tcl/tclconfig/tcl.m4
-+++ libtiff/tcl/tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- libz/tcl/tclconfig/tcl.m4
-+++ libz/tcl/tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- tclconfig/tcl.m4
-+++ tclconfig/tcl.m4
-@@ -759,7 +759,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
-@@ -1143,7 +1143,7 @@
- # is kind of overkill but it works.
- # Disable inlining only when one of the
- # files in compat/*.c is being linked in.
-- if test x"${LIBOBJS}" != x ; then
-+ if test x"${LIB@&t@OBJS}" != x ; then
- EXTRA_CFLAGS="${EXTRA_CFLAGS} -fno-inline"
- fi
-
-@@ -2026,7 +2026,7 @@
- # results, and the version is kept in special file).
-
- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-+ system=MP-RAS-`awk '{print $3}' /etc/.relid`
- fi
- if test "`uname -s`" = "AIX" ; then
- system=AIX-`uname -v`.`uname -r`
diff --git a/dev-tcltk/tkimg/files/tkimg-1.3-makedeps.patch b/dev-tcltk/tkimg/files/tkimg-1.3-makedeps.patch
deleted file mode 100644
index ef6696676..000000000
--- a/dev-tcltk/tkimg/files/tkimg-1.3-makedeps.patch
+++ /dev/null
@@ -1,176 +0,0 @@
---- bmp/Makefile.in
-+++ bmp/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- gif/Makefile.in
-+++ gif/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- ico/Makefile.in
-+++ ico/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- jpeg/Makefile.in
-+++ jpeg/Makefile.in
-@@ -322,7 +322,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- pcx/Makefile.in
-+++ pcx/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- pixmap/Makefile.in
-+++ pixmap/Makefile.in
-@@ -324,7 +324,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- png/Makefile.in
-+++ png/Makefile.in
-@@ -322,7 +322,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- ppm/Makefile.in
-+++ ppm/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- ps/Makefile.in
-+++ ps/Makefile.in
-@@ -320,7 +320,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- sgi/Makefile.in
-+++ sgi/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- sun/Makefile.in
-+++ sun/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- tga/Makefile.in
-+++ tga/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- tiff/Makefile.in
-+++ tiff/Makefile.in
-@@ -322,7 +322,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- window/Makefile.in
-+++ window/Makefile.in
-@@ -323,7 +323,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- xbm/Makefile.in
-+++ xbm/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
---- xpm/Makefile.in
-+++ xpm/Makefile.in
-@@ -318,7 +318,7 @@
-
- VPATH = $(srcdir)
-
--.c.$(OBJEXT):
-+.c.$(OBJEXT): init.c
- $(COMPILE) -c `@CYGPATH@ $<` -o $@
-
- init.c: $(srcdir)/../init.c
diff --git a/dev-tcltk/tkimg/files/tkimg-1.3-syslibs.patch b/dev-tcltk/tkimg/files/tkimg-1.3-syslibs.patch
deleted file mode 100644
index 9ff0b5774..000000000
--- a/dev-tcltk/tkimg/files/tkimg-1.3-syslibs.patch
+++ /dev/null
@@ -1,441 +0,0 @@
---- configure.in
-+++ configure.in
-@@ -43,24 +43,20 @@
- CC=`echo $CC | sed -e 's/ .*$//'`
-
- TEA_CONFIG_COLLECT
--TEA_CONFIG_SUBDIR(libz/tcl, [])
--TEA_CONFIG_SUBDIR(libpng/tcl, [--with-zlibtcl=`pwd`/libz/tcl])
--TEA_CONFIG_SUBDIR(libtiff/tcl,[])
--TEA_CONFIG_SUBDIR(libjpeg/tcl,[])
- TEA_CONFIG_SUBDIR(base, [])
- TEA_CONFIG_SUBDIR(bmp, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(gif, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(ico, [--with-tkimg=`pwd`/base])
--TEA_CONFIG_SUBDIR(jpeg, [--with-tkimg=`pwd`/base --with-jpegtcl=`pwd`/libjpeg/tcl])
-+TEA_CONFIG_SUBDIR(jpeg, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(pcx, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(pixmap, [--with-tkimg=`pwd`/base])
--TEA_CONFIG_SUBDIR(png, [--with-tkimg=`pwd`/base --with-pngtcl=`pwd`/libpng/tcl --with-zlibtcl=`pwd`/libz/tcl])
-+TEA_CONFIG_SUBDIR(png, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(ppm, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(ps, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(sgi, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(sun, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(tga, [--with-tkimg=`pwd`/base])
--TEA_CONFIG_SUBDIR(tiff, [--with-tkimg=`pwd`/base --with-tifftcl=`pwd`/libtiff/tcl --with-zlibtcl=`pwd`/libz/tcl --with-jpegtcl=`pwd`/libjpeg/tcl])
-+TEA_CONFIG_SUBDIR(tiff, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(window, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(xbm, [--with-tkimg=`pwd`/base])
- TEA_CONFIG_SUBDIR(xpm, [--with-tkimg=`pwd`/base])
---- jpeg/Makefile.in
-+++ jpeg/Makefile.in
-@@ -51,10 +51,6 @@
- ## tkimgjpegstub_OBJECTS = tkimgjpegStubLib.$(OBJEXT)
- ## tkimgjpegstub_LIB_FILE= @tkimgjpegstub_LIB_FILE@
-
--jpegtcl_SRC_PATH = @jpegtcl_SRC_PATH@
--jpegtcl_BUILD_PATH = @jpegtcl_BUILD_PATH@
--jpegtcl_VERSION = @jpegtcl_VERSION@
--
- tkimg_SRC_PATH = @tkimg_SRC_PATH@
- tkimg_BUILD_PATH = @tkimg_BUILD_PATH@
- tkimg_VERSION = @tkimg_VERSION@
-@@ -189,8 +185,6 @@
-
- INCLUDES = \
- -I$(tkimg_SRC_PATH) \
-- -I$(jpegtcl_SRC_PATH) \
-- -I$(jpegtcl_BUILD_PATH)/libjpeg \
- -I. -I$(srcdir) \
- @TCL_INCLUDES@ \
- @TK_INCLUDES@ \
-@@ -202,8 +196,7 @@
-
- CONFIG_CLEAN_FILES = Makefile pkgIndex.tcl
-
--CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\" \
-- -DJPEGTCL_VERSION=\"$(jpegtcl_VERSION)\" \
-+CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\"
-
- LIBS = @LIBS@
- AR = ar
---- jpeg/configure.in
-+++ jpeg/configure.in
-@@ -95,11 +95,6 @@
- TEA_PATH_CONFIG(tkimg)
- TEA_LOAD_CONFIG(tkimg)
-
--TEA_PATH_CONFIG(jpegtcl)
--TEA_LOAD_CONFIG(jpegtcl)
--AC_SUBST(jpegtcl_VERSION)
--
--IMG_SRCPATH(jpegtcl)
- IMG_SRCPATH(tkimg)
-
- #--------------------------------------------------------------------
-@@ -186,7 +181,6 @@
- AC_DEFINE(USE_TCL_STUBS)
- AC_DEFINE(USE_TK_STUBS)
- AC_DEFINE(USE_TKIMG_STUBS)
--AC_DEFINE(USE_JPEGTCL_STUBS)
-
- #--------------------------------------------------------------------
- # This macro generates a line to use when building a library. It
-@@ -203,13 +197,11 @@
-
- if test "${TEA_PLATFORM}" = "windows" -a "$GCC" != "yes" ; then
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${tkimg_STUB_LIB_PATH}`\""
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${jpegtcl_STUB_LIB_PATH}`\""
- else
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${tkimg_STUB_LIB_SPEC}"
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${jpegtcl_STUB_LIB_SPEC}"
- fi
-
--SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \${TK_LIBS}"
-+SHLIB_LD_LIBS="${SHLIB_LD_LIBS} -ljpeg \${TK_LIBS}"
-
- #--------------------------------------------------------------------
- # Find tclsh so that we can run pkg_mkIndex to generate the pkgIndex.tcl
---- jpeg/jpeg.c
-+++ jpeg/jpeg.c
-@@ -53,9 +53,10 @@
- */
-
- #include <stdio.h>
--
--#include <tcl.h>
--#include <jpegtcl.h>
-+#include <sys/types.h>
-+#include <jpeglib.h>
-+#include <jerror.h>
-+#include <tk.h>
-
- static int SetupJPegLibrary _ANSI_ARGS_ ((Tcl_Interp *interp));
-
-@@ -145,10 +146,6 @@
- struct my_error_mgr jerror; /* for controlling libjpeg error handling */
- int i;
-
-- if (Jpegtcl_InitStubs(interp, "1.0", 0) == NULL) {
-- return TCL_ERROR;
-- }
--
- /* The followin code tries to determine if the JPEG library is
- valid at all. The library might be configured differently,
- which will produce core dumps. Also it might be that
---- png/Makefile.in
-+++ png/Makefile.in
-@@ -51,14 +51,6 @@
- ## tkimgpngstub_OBJECTS = tkimgpngStubLib.$(OBJEXT)
- ## tkimgpngstub_LIB_FILE= @tkimgpngstub_LIB_FILE@
-
--pngtcl_SRC_PATH = @pngtcl_SRC_PATH@
--pngtcl_BUILD_PATH = @pngtcl_BUILD_PATH@
--pngtcl_VERSION = @pngtcl_VERSION@
--
--zlibtcl_SRC_PATH = @zlibtcl_SRC_PATH@
--zlibtcl_BUILD_PATH = @zlibtcl_BUILD_PATH@
--zlibtcl_VERSION = @zlibtcl_VERSION@
--
- tkimg_SRC_PATH = @tkimg_SRC_PATH@
- tkimg_BUILD_PATH = @tkimg_BUILD_PATH@
- tkimg_VERSION = @tkimg_VERSION@
-@@ -193,10 +185,6 @@
-
- INCLUDES = \
- -I$(tkimg_SRC_PATH) \
-- -I$(pngtcl_SRC_PATH) \
-- -I$(pngtcl_BUILD_PATH) \
-- -I$(zlibtcl_SRC_PATH) \
-- -I$(zlibtcl_BUILD_PATH) \
- -I. -I$(srcdir) \
- @TCL_INCLUDES@ \
- @TK_INCLUDES@ \
-@@ -208,9 +196,7 @@
-
- CONFIG_CLEAN_FILES = Makefile pkgIndex.tcl
-
--CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\" \
-- -DPNGTCL_VERSION=\"$(pngtcl_VERSION)\" \
-- -DPNGTCL_VERSION=\"$(zlibtcl_VERSION)\"
-+CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\"
-
- LIBS = @LIBS@
- AR = ar
---- png/configure.in
-+++ png/configure.in
-@@ -95,17 +95,7 @@
- TEA_PATH_CONFIG(tkimg)
- TEA_LOAD_CONFIG(tkimg)
-
--TEA_PATH_CONFIG(pngtcl)
--TEA_LOAD_CONFIG(pngtcl)
--AC_SUBST(pngtcl_VERSION)
--
--TEA_PATH_CONFIG(zlibtcl)
--TEA_LOAD_CONFIG(zlibtcl)
--AC_SUBST(zlibtcl_VERSION)
--
- IMG_SRCPATH(tkimg)
--IMG_SRCPATH(pngtcl)
--IMG_SRCPATH(zlibtcl)
-
- #--------------------------------------------------------------------
- # __CHANGE__
-@@ -191,8 +181,6 @@
- AC_DEFINE(USE_TCL_STUBS)
- AC_DEFINE(USE_TK_STUBS)
- AC_DEFINE(USE_TKIMG_STUBS)
--AC_DEFINE(USE_PNGTCL_STUBS)
--AC_DEFINE(USE_ZLIBTCL_STUBS)
-
- #--------------------------------------------------------------------
- # This macro generates a line to use when building a library. It
-@@ -209,13 +197,11 @@
-
- if test "${TEA_PLATFORM}" = "windows" -a "$GCC" != "yes" ; then
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${tkimg_STUB_LIB_PATH}`\""
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${pngtcl_STUB_LIB_PATH}`\""
- else
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${tkimg_STUB_LIB_SPEC}"
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${pngtcl_STUB_LIB_SPEC}"
- fi
-
--SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \${TK_LIBS}"
-+SHLIB_LD_LIBS="${SHLIB_LD_LIBS} -lpng \${TK_LIBS}"
-
- #--------------------------------------------------------------------
- # Find tclsh so that we can run pkg_mkIndex to generate the pkgIndex.tcl
---- png/png.c
-+++ png/png.c
-@@ -21,7 +21,7 @@
- */
-
- #include <tcl.h>
--#include <pngtcl.h>
-+#include <png.h>
- #include <string.h>
- #include <stdlib.h>
-
-@@ -108,9 +108,6 @@
- SetupPngLibrary (interp)
- Tcl_Interp *interp;
- {
-- if (Pngtcl_InitStubs(interp, PNGTCL_VERSION, 0) == NULL) {
-- return TCL_ERROR;
-- }
- return TCL_OK;
- }
-
---- tclconfig/tcl.m4
-+++ tclconfig/tcl.m4
-@@ -912,7 +912,7 @@
-
- # AIX v<=4.1 has some different flags than 4.2+
- if test "$system" = "AIX-4.1" -o "`uname -v`" -lt "4" ; then
-- LIBOBJS="$LIBOBJS tclLoadAix.o"
-+ AC_LIBOBJ([tclLoadAix])
- DL_LIBS="-lld"
- fi
-
-@@ -2178,7 +2178,7 @@
- AC_MSG_RESULT([ok])
- else
- AC_MSG_RESULT([buggy])
-- LIBOBJS="$LIBOBJS fixstrtod.o"
-+ AC_LIBOBJ([fixstrtod])
- AC_DEFINE(strtod, fixstrtod)
- fi
- fi
---- tiff/Makefile.in
-+++ tiff/Makefile.in
-@@ -28,9 +28,6 @@
-
- tkimgtiff_SOURCES = \
- tiff.c \
-- tiffZip.c \
-- tiffJpeg.c \
-- tiffPixar.c \
- @EXTRA_SOURCES@
-
- WIN_SOURCES =
-@@ -54,18 +51,6 @@
- ## tkimgtiffstub_OBJECTS = tkimgtiffStubLib.$(OBJEXT)
- ## tkimgtiffstub_LIB_FILE= @tkimgtiffstub_LIB_FILE@
-
--tifftcl_SRC_PATH = @tifftcl_SRC_PATH@
--tifftcl_BUILD_PATH = @tifftcl_BUILD_PATH@
--tifftcl_VERSION = @tifftcl_VERSION@
--
--jpegtcl_SRC_PATH = @jpegtcl_SRC_PATH@
--jpegtcl_BUILD_PATH = @jpegtcl_BUILD_PATH@
--jpegtcl_VERSION = @jpegtcl_VERSION@
--
--zlibtcl_SRC_PATH = @zlibtcl_SRC_PATH@
--zlibtcl_BUILD_PATH = @zlibtcl_BUILD_PATH@
--zlibtcl_VERSION = @zlibtcl_VERSION@
--
- tkimg_SRC_PATH = @tkimg_SRC_PATH@
- tkimg_BUILD_PATH = @tkimg_BUILD_PATH@
- tkimg_VERSION = @tkimg_VERSION@
-@@ -200,12 +185,6 @@
-
- INCLUDES = \
- -I$(tkimg_SRC_PATH) \
-- -I$(tifftcl_SRC_PATH) \
-- -I$(tifftcl_BUILD_PATH)/libtiff \
-- -I$(jpegtcl_SRC_PATH) \
-- -I$(jpegtcl_BUILD_PATH)/libjpeg \
-- -I$(zlibtcl_SRC_PATH) \
-- -I$(zlibtcl_BUILD_PATH) \
- -I. -I$(srcdir) \
- @TCL_INCLUDES@ \
- @TK_INCLUDES@ \
-@@ -217,10 +196,7 @@
-
- CONFIG_CLEAN_FILES = Makefile pkgIndex.tcl
-
--CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\" \
-- -DTIFFTCL_VERSION=\"$(tifftcl_VERSION)\" \
-- -DJPEGTCL_VERSION=\"$(jpegtcl_VERSION)\" \
-- -DZLIBTCL_VERSION=\"$(zlibtcl_VERSION)\"
-+CPPFLAGS = @CPPFLAGS@ -DPACKAGE_NAME=\"$(DPACKAGE)\"
-
- LIBS = @LIBS@
- AR = ar
---- tiff/configure.in
-+++ tiff/configure.in
-@@ -95,22 +95,7 @@
- TEA_PATH_CONFIG(tkimg)
- TEA_LOAD_CONFIG(tkimg)
-
--TEA_PATH_CONFIG(tifftcl)
--TEA_LOAD_CONFIG(tifftcl)
--AC_SUBST(tifftcl_VERSION)
--
--TEA_PATH_CONFIG(jpegtcl)
--TEA_LOAD_CONFIG(jpegtcl)
--AC_SUBST(jpegtcl_VERSION)
--
--TEA_PATH_CONFIG(zlibtcl)
--TEA_LOAD_CONFIG(zlibtcl)
--AC_SUBST(zlibtcl_VERSION)
--
- IMG_SRCPATH(tkimg)
--IMG_SRCPATH(tifftcl)
--IMG_SRCPATH(jpegtcl)
--IMG_SRCPATH(zlibtcl)
-
- #--------------------------------------------------------------------
- # __CHANGE__
-@@ -196,9 +181,6 @@
- AC_DEFINE(USE_TCL_STUBS)
- AC_DEFINE(USE_TK_STUBS)
- AC_DEFINE(USE_TKIMG_STUBS)
--AC_DEFINE(USE_TIFFTCL_STUBS)
--AC_DEFINE(USE_JPEGTCL_STUBS)
--AC_DEFINE(USE_ZLIBTCL_STUBS)
-
- #--------------------------------------------------------------------
- # This macro generates a line to use when building a library. It
-@@ -215,17 +197,11 @@
-
- if test "${TEA_PLATFORM}" = "windows" -a "$GCC" != "yes" ; then
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${tkimg_STUB_LIB_PATH}`\""
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${tifftcl_STUB_LIB_PATH}`\""
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${jpegtcl_STUB_LIB_PATH}`\""
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \"`${CYGPATH} ${zlibtcl_STUB_LIB_PATH}`\""
- else
- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${tkimg_STUB_LIB_SPEC}"
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${tifftcl_STUB_LIB_SPEC}"
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${jpegtcl_STUB_LIB_SPEC}"
-- SHLIB_LD_LIBS="${SHLIB_LD_LIBS} ${zlibtcl_STUB_LIB_SPEC}"
- fi
-
--SHLIB_LD_LIBS="${SHLIB_LD_LIBS} \${TK_LIBS}"
-+SHLIB_LD_LIBS="${SHLIB_LD_LIBS} -ltiff \${TK_LIBS}"
-
- #--------------------------------------------------------------------
- # Find tclsh so that we can run pkg_mkIndex to generate the pkgIndex.tcl
---- tiff/tiff.c
-+++ tiff/tiff.c
-@@ -14,10 +14,7 @@
- * Generic initialization code, parameterized via CPACKAGE and PACKAGE.
- */
-
--#include <tcl.h>
--#include <tifftcl.h>
--#include <jpegtcl.h>
--#include <zlibtcl.h>
-+#include <tk.h>
-
- static int SetupTiffLibrary _ANSI_ARGS_ ((Tcl_Interp *interp));
-
-@@ -26,6 +23,8 @@
-
- #include "init.c"
-
-+#include <tiff.h>
-+#include <tiffio.h>
- #include <tiffInt.h>
-
-
-@@ -81,10 +80,6 @@
- {
- static int initialized = 0;
-
-- if (Tifftcl_InitStubs(interp, TIFFTCL_VERSION, 0) == NULL) {
-- return TCL_ERROR;
-- }
--
- if (errorMessage) {
- ckfree(errorMessage);
- errorMessage = NULL;
-@@ -96,35 +91,8 @@
- TIFFSetWarningHandler(_TIFFwarn);
- }
-
-- /*
-- * Initialize jpeg and zlib too, for use by the CODEC's we register
-- * with the base TIFF library in this package.
-- */
--
-- if (Jpegtcl_InitStubs(interp, "1.0", 0) == NULL) {
-- return TCL_ERROR;
-- }
--
- if (!initialized) {
- initialized = 1;
-- if (
-- TIFFRegisterCODEC && TIFFError && TIFFPredictorInit &&
-- TIFFMergeFieldInfo && TIFFFlushData1 && _TIFFNoPostDecode &&
-- TIFFTileRowSize && TIFFScanlineSize && _TIFFsetByteArray &&
-- TIFFVSetField && TIFFSwabArrayOfShort
-- ) {
--
-- if (Zlibtcl_InitStubs(interp, "1.0", 0) == NULL) {
-- return TCL_ERROR;
-- }
-- TIFFRegisterCODEC (COMPRESSION_DEFLATE, "Deflate", TkimgTIFFInitZip);
--
-- if (Jpegtcl_InitStubs(interp, "1.0", 0) == NULL) {
-- return TCL_ERROR;
-- }
-- TIFFRegisterCODEC (COMPRESSION_JPEG, "JPEG", TkimgTIFFInitJpeg);
-- TIFFRegisterCODEC (COMPRESSION_PIXARLOG, "PixarLog", TkimgTIFFInitPixar);
-- }
- }
- return TCL_OK;
- }
---- tiff/tiffInt.h
-+++ tiff/tiffInt.h
-@@ -2,7 +2,7 @@
- * tiffInit.h --
- */
-
--#include <tifftcl.h>
-+#include <tiff.h>
-
- /*
- * Declarations shared between the .c files of the TIFF format handler.
diff --git a/dev-tcltk/tkimg/files/tkimg-1.3-warnings.patch b/dev-tcltk/tkimg/files/tkimg-1.3-warnings.patch
deleted file mode 100644
index 5151b84f2..000000000
--- a/dev-tcltk/tkimg/files/tkimg-1.3-warnings.patch
+++ /dev/null
@@ -1,35 +0,0 @@
---- bmp/bmp.c
-+++ bmp/bmp.c
-@@ -446,9 +446,7 @@
- }
- if ((rleBuf[0]==0) && (rleBuf[1]==2)) {
- /* Deltarecord */
-- /* printf ("Deltarecord\n"); fflush (stdout); */
-- x += rleBuf[2];
-- y += rleBuf[3];
-+ Tcl_AppendResult(interp, "Delta records not supported.", (char *)NULL);
- }
- }
- }
---- ps/ps.c
-+++ ps/ps.c
-@@ -171,7 +171,7 @@
- (tkimg_Read(handle, (char *) buf, 40) == 40))) {
- int w, h, zoomx, zoomy;
- char *p = buf;
-- buf[41] = 0;
-+ buf[40] = 0;
- w = - (int) strtoul(p, &p, 0);
- h = - (int) strtoul(p, &p, 0);
- w += strtoul(p, &p, 0);
---- tiff/tiff.c
-+++ tiff/tiff.c
-@@ -561,7 +561,7 @@
- int srcX, srcY;
- {
- myblock bl;
-- unsigned char *pixelPtr = block.pixelPtr;
-+ unsigned char *pixelPtr;
- uint32 w, h;
- size_t npixels;
- uint32 *raster;
diff --git a/dev-tcltk/tkimg/metadata.xml b/dev-tcltk/tkimg/metadata.xml
deleted file mode 100644
index 384a7ca04..000000000
--- a/dev-tcltk/tkimg/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>tcltk</herd>
-<longdescription>
-The "Img" package adds a lot of image formats to Tcl/Tk.
-</longdescription>
-</pkgmetadata>
diff --git a/dev-tcltk/tkimg/tkimg-1.3.ebuild b/dev-tcltk/tkimg/tkimg-1.3.ebuild
deleted file mode 100644
index 974fa218a..000000000
--- a/dev-tcltk/tkimg/tkimg-1.3.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils autotools
-
-MY_P="${PN}${PV}"
-DESCRIPTION="Adds a lot of image formats to Tcl/Tk"
-HOMEPAGE="http://sourceforge.net/projects/tkimg/"
-SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.bz2"
-
-IUSE=""
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="dev-lang/tk
- media-libs/libpng
- media-libs/tiff"
-
-S=${WORKDIR}/${MY_P}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/${P}-m4.patch
- epatch "${FILESDIR}"/${P}-syslibs.patch
- epatch "${FILESDIR}"/${P}-makedeps.patch
- epatch "${FILESDIR}"/${P}-warnings.patch
- rm -f $(find . -name configure)
- for i in $(find -type d); do
- cd "${S}"/${i}
- [ -f configure.in ] && eautoreconf
- done
-}
-
-src_install() {
- emake \
- DESTDIR="${D}" \
- INSTALL_ROOT="${D}" \
- install || die "emake install failed"
- dodoc ChangeLog README Reorganization.Notes.txt changes ANNOUNCE
- insinto /usr/share/doc/${PF}/demo
- doins -r demo/*
- doman doc/man/*
- use doc && dohtml doc/html
-}
diff --git a/dev-util/boa-constructor/ChangeLog b/dev-util/boa-constructor/ChangeLog
deleted file mode 100644
index 1f5b0a54e..000000000
--- a/dev-util/boa-constructor/ChangeLog
+++ /dev/null
@@ -1,108 +0,0 @@
-# ChangeLog for dev-util/boa-constructor
-# Copyright 2002-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-util/boa-constructor/ChangeLog,v 1.27 2007/02/03 21:35:13 dirtyepic Exp $
-
-*boa-constructor-0.6.1 (14 Sep 2007)
- 14 Sep 2007; Andrey Grozin <A.G.Grozin@inp.nsk.su>
- Version bump
-
- 03 Feb 2007; Ryan Hill <dirtyepic@gentoo.org>
- -boa-constructor-0.3.0_alpha.ebuild, -boa-constructor-0.3.1_alpha.ebuild:
- Remove old versions depending on wxpython-2.4
-
- 29 Dec 2006; Tobias Scherbaum <dertobi123@gentoo.org>
- boa-constructor-0.4.0_alpha.ebuild:
- Stable on ppc wrt bug #159031.
-
- 27 Dec 2006; Ryan Hill <dirtyepic@gentoo.org>
- boa-constructor-0.4.0_alpha.ebuild:
- Stable on x86.
-
- 27 Dec 2006; Gustavo Zacarias <gustavoz@gentoo.org>
- boa-constructor-0.4.0_alpha.ebuild:
- Stable on sparc wrt #159031
-
- 03 Oct 2006; Mart Raudsepp <leio@gentoo.org>
- -boa-constructor-0.1.0_alpha.ebuild, -boa-constructor-0.2.3_alpha.ebuild,
- -boa-constructor-0.2.8_pre20040620.ebuild:
- Prune old versions.
-
- 06 Sep 2006; Javier Villavicencio <the_paya@gentoo.org>
- boa-constructor-0.4.0_alpha.ebuild:
- Add ~x86-fbsd keyword.
-
- 12 Aug 2005; Luis Medinas <metalgod@gentoo.org>
- boa-constructor-0.4.0_alpha.ebuild:
- Add ~amd64 Keywords.
-
- 22 May 2005; Rob Cakebread <pythonhead@gentoo.org>
- +files/boa-constructor-0.4.0_alpha-wxversion.patch:
- Add wxversion patch. bug# 93557
-
-*boa-constructor-0.4.0_alpha (22 May 2005)
-
- 22 May 2005; Rob Cakebread <pythonhead@gentoo.org> files/boa-constructor,
- +boa-constructor-0.4.0_alpha.ebuild:
- Version bump.
-
- 24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org>
- boa-constructor-0.3.0_alpha.ebuild:
- Stable on ppc.
-
- 31 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
- Change encoding to UTF-8 for GLEP 31 compliance
-
- 17 Nov 2004; Jason Wever <weeve@gentoo.org>
- boa-constructor-0.3.0_alpha.ebuild:
- Stable on sparc.
-
- 13 Nov 2004; Rob Cakebread <pythonhead@gentoo.org>
- boa-constructor-0.1.0_alpha.ebuild, boa-constructor-0.2.3_alpha.ebuild,
- boa-constructor-0.2.8_pre20040620.ebuild,
- boa-constructor-0.3.0_alpha.ebuild, boa-constructor-0.3.1_alpha.ebuild:
- Pegged deps on wxpython at 2.4*
-
-*boa-constructor-0.3.1_alpha (04 Nov 2004)
-
- 04 Nov 2004; Rob Cakebread <pythonhead@gentoo.org>
- boa-constructor-0.3.0_alpha.ebuild, +boa-constructor-0.3.1_alpha.ebuild:
- Version bump bug# 69921 thanks David Grant <david.grant@telus.net>, marked
- x86 stable
-
-*boa-constructor-0.3.0_alpha (18 Aug 2004)
-
- 18 Aug 2004; Rob Cakebread <pythonhead@gentoo.org>
- +boa-constructor-0.3.0_alpha.ebuild:
- Version bump. bug# 60825
-
- 03 Jul 2004; Bryan Østergaard <kloeri@gentoo.org>
- boa-constructor-0.1.0_alpha.ebuild, boa-constructor-0.2.3_alpha.ebuild,
- boa-constructor-0.2.8_pre20040620.ebuild:
- Change wxPython to wxpython.
-
-*boa-constructor-0.2.8_pre20040620 (20 Jun 2004)
-
- 20 Jun 2004; Rob Cakebread <pythonhead@gentoo.org> +metadata.xml,
- +boa-constructor-0.2.8_pre20040620.ebuild:
- Version bump. Closes bug# 33644
-
- 25 Apr 2004; David Holm <dholm@gentoo.org>
- boa-constructor-0.2.3_alpha.ebuild:
- Added to ~ppc.
-
- 23 Feb 2004; Sven Blumenstein <bazik@gentoo.org>
- boa-constructor-0.2.3_alpha.ebuild:
- Do you want some fries with this sparc keyword?
-
-*boa-constructor-0.2.3_alpha (20 Apr 2003)
-
- 20 Apr 2003; Bart Lauwers <blauwers@gentoo.org> :
- Version bump per Bug#12640
-
-*boa-constructor-0.1.0_alpha (Mar 15 2002)
-
- 06 Dec 2002; Rodney Rees <manson@gentoo.org> : changed sparc ~sparc keywords
-
- 15 Mar 2002; Arcady Genkin <agenkin@thpoon.com> boa-constructor-0.1.0_alpha :
-
- Initial version of the package.
diff --git a/dev-util/boa-constructor/Manifest b/dev-util/boa-constructor/Manifest
deleted file mode 100644
index caa12f071..000000000
--- a/dev-util/boa-constructor/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX boa-constructor 386 RMD160 d7b8662daff00fcebf0a76879f464e56795a21e8 SHA1 53e7f2d49248850b79b94f06699a775f96cdfabc SHA256 75029bfd7361a1014a98dc3f3d0121875db6217bcfaf1f894ea89c5e58114ffc
-MD5 343cbbdca5ed6c641e11244a33a7d1bd files/boa-constructor 386
-RMD160 d7b8662daff00fcebf0a76879f464e56795a21e8 files/boa-constructor 386
-SHA256 75029bfd7361a1014a98dc3f3d0121875db6217bcfaf1f894ea89c5e58114ffc files/boa-constructor 386
-DIST boa-constructor-0.6.1.src.zip 13782538 RMD160 d40453f04a1449119ec22684f0882135d82222ba SHA1 20e3508e66c6cf2a6da647558f90f3b2ae0fab10 SHA256 7ba97ca73472ac24a1b220594003c198ff32c1750274cdc123bfe3b341f43b58
-EBUILD boa-constructor-0.6.1.ebuild 968 RMD160 0397b0e15320365fb25f9bc3fd7d22372fd9d52b SHA1 4a4d3cde2b899a44282f755edc8ca85481d02436 SHA256 e8fa7f2f6bc3ccdf0632e0e44851287b183f1dcbca289f2d9b988958c644bba6
-MD5 954e8043d17e23a3165a4f93503e8266 boa-constructor-0.6.1.ebuild 968
-RMD160 0397b0e15320365fb25f9bc3fd7d22372fd9d52b boa-constructor-0.6.1.ebuild 968
-SHA256 e8fa7f2f6bc3ccdf0632e0e44851287b183f1dcbca289f2d9b988958c644bba6 boa-constructor-0.6.1.ebuild 968
-MISC ChangeLog 3638 RMD160 bb0765334edbc28ee11dca510f3e5d9712a6224a SHA1 b97401a3a0867e3f42334684d58311d32089f0a2 SHA256 df50420434703e2cb923b37e8a91a75162c3a531c836af306202932161521689
-MD5 05f9a9de7630aad9bbffada8e37d3fd0 ChangeLog 3638
-RMD160 bb0765334edbc28ee11dca510f3e5d9712a6224a ChangeLog 3638
-SHA256 df50420434703e2cb923b37e8a91a75162c3a531c836af306202932161521689 ChangeLog 3638
-MISC metadata.xml 270 RMD160 4c99e3e5fd912332fbb9f258342a041da76100b3 SHA1 bc88c79712329449317309220db2b69e81d168d8 SHA256 e0e3f95520e8f3ac114892eb4c6374a795840fa2c13713fe963a4456451057a7
-MD5 7e8237fba7a4dfcc01d7501289d125ed metadata.xml 270
-RMD160 4c99e3e5fd912332fbb9f258342a041da76100b3 metadata.xml 270
-SHA256 e0e3f95520e8f3ac114892eb4c6374a795840fa2c13713fe963a4456451057a7 metadata.xml 270
-MD5 e76e286a64fd742016dfd82faf769ec3 files/digest-boa-constructor-0.6.1 274
-RMD160 15cec56b9adf4521833f0a0738a0db58111dcc21 files/digest-boa-constructor-0.6.1 274
-SHA256 674464f34123d4411be8a14a19f891a8adcb60a775ea482be5212e25ab4c89b2 files/digest-boa-constructor-0.6.1 274
diff --git a/dev-util/boa-constructor/boa-constructor-0.6.1.ebuild b/dev-util/boa-constructor/boa-constructor-0.6.1.ebuild
deleted file mode 100644
index d18ac5803..000000000
--- a/dev-util/boa-constructor/boa-constructor-0.6.1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-inherit eutils python
-
-DESCRIPTION="Python GUI RAD development tool."
-HOMEPAGE="http://boa-constructor.sourceforge.net/"
-SRC_URI="mirror://sourceforge/boa-constructor/${P}.src.zip"
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~x86"
-IUSE=""
-
-RDEPEND="=dev-python/wxpython-2.6*
- dev-libs/expat"
-
-DEPEND="${RDEPEND}
- app-arch/unzip"
-
-src_compile() {
- python -c "import compileall; compileall.compile_dir('.', force=1)"
-}
-
-src_install () {
- python_version
- local boadir="/usr/lib/python${PYVER}/site-packages/boa"
-
- local dir
- for dir in `find . -type d`
- do
- insinto "${boadir}/${dir}"
- cd "${dir}"
- local file
- for file in *
- do
- [ -f "${file}" ] && doins "${file}"
- done
- cd "${S}"
- done
-
- insinto "${boadir}"
- insinto "${boadir}/Plug-ins"
- doins Plug-ins/*
-
- dobin "${FILESDIR}/boa-constructor"
-
- dodoc Bugs.txt Changes.txt Credits.txt README.txt
-}
diff --git a/dev-util/boa-constructor/files/boa-constructor b/dev-util/boa-constructor/files/boa-constructor
deleted file mode 100644
index 4315b612a..000000000
--- a/dev-util/boa-constructor/files/boa-constructor
+++ /dev/null
@@ -1,10 +0,0 @@
-#!/bin/sh
-# $Header: /var/cvsroot/gentoo-x86/dev-util/boa-constructor/files/boa-constructor,v 1.3 2005/05/22 05:29:47 pythonhead Exp $
-
-# This is a bit of a kludge, but works.
-# If anyone can think of a better way to start Boa, feel free to
-# modify.
-
-pv=`python -V 2>&1 | sed -e 's:Python \([0-9].[0-9]\).*:\1:'`
-cd /usr/lib/python"${pv}"/site-packages/boa
-exec /usr/bin/python Boa.py
diff --git a/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1 b/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1
deleted file mode 100644
index 6758040fd..000000000
--- a/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 150d923c608a405eeb17bf655ce26b14 boa-constructor-0.6.1.src.zip 13782538
-RMD160 d40453f04a1449119ec22684f0882135d82222ba boa-constructor-0.6.1.src.zip 13782538
-SHA256 7ba97ca73472ac24a1b220594003c198ff32c1750274cdc123bfe3b341f43b58 boa-constructor-0.6.1.src.zip 13782538
diff --git a/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1_beta b/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1_beta
deleted file mode 100644
index 6758040fd..000000000
--- a/dev-util/boa-constructor/files/digest-boa-constructor-0.6.1_beta
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 150d923c608a405eeb17bf655ce26b14 boa-constructor-0.6.1.src.zip 13782538
-RMD160 d40453f04a1449119ec22684f0882135d82222ba boa-constructor-0.6.1.src.zip 13782538
-SHA256 7ba97ca73472ac24a1b220594003c198ff32c1750274cdc123bfe3b341f43b58 boa-constructor-0.6.1.src.zip 13782538
diff --git a/dev-util/boa-constructor/metadata.xml b/dev-util/boa-constructor/metadata.xml
deleted file mode 100644
index feffa1b96..000000000
--- a/dev-util/boa-constructor/metadata.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>wxwindows</herd>
-<longdescription>Boa Constructor is a cross platform Python IDE and wxPython GUI Builder.</longdescription>
-</pkgmetadata>
diff --git a/eclass/fortran.eclass b/eclass/fortran.eclass
deleted file mode 100644
index 44ea0d763..000000000
--- a/eclass/fortran.eclass
+++ /dev/null
@@ -1,219 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-#
-# Author: Danny van Dyk <kugelfang@gentoo.org>
-#
-
-inherit eutils autotools
-
-DESCRIPTION="Based on the ${ECLASS} eclass"
-
-IUSE="debug"
-
-#DEPEND="virtual/fortran" # Let's aim for this...
-
-# Which Fortran Compiler has been selected ?
-export FORTRANC
-
-# These are the options to ./configure / econf that enable the usage
-# of a specific Fortran Compiler. If your package uses a different
-# option that the one listed here, overwrite it in your ebuild.
-g77_CONF="--with-f77"
-f2c_CONF="--with-f2c"
-
-# This function prints the necessary options for the currently selected
-# Fortran Compiler.
-fortran_conf() {
- echo $(eval echo \${$(echo -n ${FORTRANC})_CONF})
-}
-
-# need_fortran(<profiles>):
-# profiles = <profile> ... <profile>
-#
-# profile:
-# * gfortran - GCC Fortran 95
-# * g77 - GCC Fortran 77
-# * f2c - Fortran 2 C Translator
-# * ifort or ifc - Intel Fortran Compiler
-# * pgf77 - Portland Group Fortran 77 compiler
-# * pgf90 - Portland Group Fortran 90/95 compiler
-#
-# Checks if at least one of <profiles> is installed.
-# Checks also if ${F77} (the fortran 77 compiler to use) and ${FC} (the fortran 90 )
-# are available on the system.
-need_fortran() {
- if [ -z "$*" ]; then
- eerror "Call need_fortran with at least one argument !"
- fi
- local AVAILABLE
- local PROFILE
- for PROFILE in $@; do
- case ${PROFILE} in
- gfortran)
- if [ -x "$(type -P gfortran 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} gfortran"
- fi
- ;;
- g77)
- if [ -x "$(type -P g77 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} g77"
- fi
- ;;
- f2c)
- if [ -x "$(type -P f2c 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} f2c"
- fi
- ;;
- pgf77)
- if [ -x "$(type -P pgf77 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} pgf77"
- fi
- ;;
- pgf90)
- if [ -x "$(type -P pgf90 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} pgf90"
- else
- echo "Else..."
- fi
- ;;
- ifort|ifc)
- case ${ARCH} in
- x86|ia64|amd64)
- if [ -x "$(type -P ifort 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} ifort"
- elif [ -x "$(type -P ifc 2> /dev/null)" ]; then
- AVAILABLE="${AVAILABLE} ifc"
- fi
- ;;
- *)
- ;;
- esac
- ;;
- esac
- done
- AVAILABLE="${AVAILABLE/^[[:space:]]}"
- use debug && echo ${AVAILABLE}
- if [ -z "${AVAILABLE}" ]; then
- eerror "None of the needed Fortran Compilers ($@) is installed."
- eerror "To install one of these, choose one of the following steps:"
- i=1
- for PROFILE in $@; do
- case ${PROFILE} in
- gfortran)
- eerror "[${i}] USE=\"fortran\" emerge =sys-devel/gcc-4*"
- ;;
- g77)
- eerror "[${i}] USE=\"fortran\" emerge =sys-devel/gcc-3*"
- ;;
- f2c)
- eerror "[${i}] emerge dev-lang/f2c"
- ;;
- pgf90)
- eerror "[${i}] emerge dev-lang/pgi-workstation"
- ;;
- pgf77)
- eerror "[${i}] emerge dev-lang/pgi-workstation"
- ;;
- ifort|ifc)
- case ${ARCH} in
- x86|ia64|amd64)
- eerror "[${i}] emerge dev-lang/ifc"
- ;;
- *)
- ;;
- esac
- esac
- i=$((i + 1))
- done
- die "Install a Fortran Compiler !"
- else
- einfo "You need one of these Fortran Compilers: $@"
- einfo "Installed are: ${AVAILABLE}"
- if [ -n "${F77}" -o -n "${FC}" -o -n "${F2C}" ]; then
- if [ -n "${F77}" ]; then
- if [ "${F77}" != "pgf77" ] && [ "${FC}" != "pgf90" ]; then
- FC="${F77}" # F77 overwrites FC
- fi
- fi
- if [ -n "${FC}" -a -n "${F2C}" ]; then
- ewarn "Using ${FC} and f2c is impossible. Disabling F2C !"
- F2C="" # Disabling f2c
- MY_FORTRAN="$(basename ${FC})" # set MY_FORTRAN to filename of
- # the Fortran Compiler
- else
- if [ -n "${F2C}" ]; then
- MY_FORTRAN="$(basename ${F2C})"
- else
- if [ "${FC}" == "pgf90" ]; then
- MY_FORTRAN="$(basename ${FC})"
- else
- MY_FORTRAN="$(basename ${F77})"
- fi
- fi
- fi
- fi
-
- # default to gfortran if available, g77 if not
- use debug && echo "MY_FORTRAN: \"${MY_FORTRAN}\""
- if hasq gfortran ${AVAILABLE}; then
- MY_FORTRAN=${MY_FORTRAN:=gfortran}
- elif hasq g77 ${AVAILABLE}; then
- MY_FORTRAN=${MY_FORTRAN:=g77}
- else
- # Default to the first valid Fortran compiler
- for i in ${AVAILABLE}; do
- MY_FORTRAN=$i
- break
- done
- fi
- use debug && echo "MY_FORTRAN: \"${MY_FORTRAN}\""
-
- if ! hasq ${MY_FORTRAN} ${AVAILABLE}; then
- eerror "Current Fortran Compiler is set to ${MY_FORTRAN}, which is not usable with this package !"
- die "Wrong Fortran Compiler !"
- fi
-
- case ${MY_FORTRAN} in
- gfortran|g77|ifc|ifort|f2c|f95|pgf90|pgf77)
- FORTRANC="${MY_FORTRAN}"
- esac
- fi
- use debug && echo "FORTRANC: \"${FORTRANC}\""
- einfo "Using ${FORTRANC}"
-}
-
-# patch_fortran():
-# Apply necessary patches for ${FORTRANC}
-patch_fortran() {
- if [ -z "${FORTRANC}" ]; then
- return
- fi
- local PATCHES=$(find ${FILESDIR} -name "${P}-${FORTRANC}-*")
- einfo "Applying patches for selected FORTRAN compiler: ${FORTRANC}"
- local PATCH
- if [ -n "${PATCHES}" ]; then
- for PATCH in ${PATCHES}; do
- epatch ${PATCH}
- done
- eautoreconf
- fi
-}
-
-# fortran_pkg_setup():
-# Set FORTRAN to indicate the list of Fortran Compiler that
-# can be used for the ebuild.
-# If not set in ebuild, FORTRAN will default to f77
-fortran_pkg_setup() {
- need_fortran ${FORTRAN:="gfortran g77"}
-}
-
-# fortran_src_unpack():
-# Run patch_fortran if no new src_unpack() is defined.
-fortran_src_unpack() {
- unpack ${A}
- cd ${S}
- patch_fortran
-}
-
-EXPORT_FUNCTIONS pkg_setup src_unpack
diff --git a/licenses/ModifiedBSD b/licenses/ModifiedBSD
deleted file mode 100644
index 91da5d5a3..000000000
--- a/licenses/ModifiedBSD
+++ /dev/null
@@ -1,30 +0,0 @@
-Anti-Grain Geometry - Version 2.4
-Copyright (C) 2002-2005 Maxim Shemanarev (McSeem)
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions
-are met:
-
- 1. Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
- 2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in
- the documentation and/or other materials provided with the
- distribution.
-
- 3. The name of the author may not be used to endorse or promote
- products derived from this software without specific prior
- written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
-IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
-INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
-HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
-STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
-IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGE.
diff --git a/licenses/OSL-2.1 b/licenses/OSL-2.1
deleted file mode 100644
index 12eace30f..000000000
--- a/licenses/OSL-2.1
+++ /dev/null
@@ -1,155 +0,0 @@
-Open Software License v. 2.1
-============================
-This Open Software License (the "License") applies to any original work
-of authorship (the "Original Work") whose owner (the "Licensor") has
-placed the following notice immediately following the copyright notice
-for the Original Work: Licensed under the Open Software License version 2.1
-
-1) Grant of Copyright License. Licensor hereby grants You a world-wide,
-royalty-free, non-exclusive, perpetual, sublicenseable license to do
-the following:
-
-to reproduce the Original Work in copies;
-to prepare derivative works ("Derivative Works") based upon the Original Work;
-to distribute copies of the Original Work and Derivative Works to the
- public, with the proviso that copies of Original Work or Derivative Works
- that You distribute shall be licensed under the Open Software License;
-to perform the Original Work publicly; and
-to display the Original Work publicly.
-
-2) Grant of Patent License. Licensor hereby grants You a world-wide,
-royalty-free, non-exclusive, perpetual, sublicenseable license, under
-patent claims owned or controlled by the Licensor that are embodied in
-the Original Work as furnished by the Licensor, to make, use, sell and
-offer for sale the Original Work and Derivative Works.
-
-3) Grant of Source Code License. The term "Source Code" means the
-preferred form of the Original Work for making modifications to it
-and all available documentation describing how to modify the Original
-Work. Licensor hereby agrees to provide a machine-readable copy of the
-Source Code of the Original Work along with each copy of the Original
-Work that Licensor distributes. Licensor reserves the right to satisfy
-this obligation by placing a machine-readable copy of the Source Code in
-an information repository reasonably calculated to permit inexpensive and
-convenient access by You for as long as Licensor continues to distribute
-the Original Work, and by publishing the address of that information
-repository in a notice immediately following the copyright notice that
-applies to the Original Work.
-
-4) Exclusions From License Grant. Neither the names of Licensor, nor
-the names of any contributors to the Original Work, nor any of their
-trademarks or service marks, may be used to endorse or promote products
-derived from this Original Work without express prior written permission
-of the Licensor. Nothing in this License shall be deemed to grant any
-rights to trademarks, copyrights, patents, trade secrets or any other
-intellectual property of Licensor except as expressly stated herein. No
-patent license is granted to make, use, sell or offer to sell embodiments
-of any patent claims other than the licensed claims defined in Section
-2. No right is granted to the trademarks of Licensor even if such marks
-are included in the Original Work. Nothing in this License shall be
-interpreted to prohibit Licensor from licensing under different terms
-from this License any Original Work that Licensor otherwise would have
-a right to license.
-
-5) External Deployment. The term "External Deployment" means the use or
-distribution of the Original Work or Derivative Works in any way such that
-the Original Work or Derivative Works may be used by anyone other than
-You, whether the Original Work or Derivative Works are distributed to
-those persons or made available as an application intended for use over
-a computer network. As an express condition for the grants of license
-hereunder, You agree that any External Deployment by You of a Derivative
-Work shall be deemed a distribution and shall be licensed to all under
-the terms of this License, as prescribed in section 1(c) herein.
-
-6) Attribution Rights. You must retain, in the Source Code of any
-Derivative Works that You create, all copyright, patent or trademark
-notices from the Source Code of the Original Work, as well as any
-notices of licensing and any descriptive text identified therein as an
-"Attribution Notice." You must cause the Source Code for any Derivative
-Works that You create to carry a prominent Attribution Notice reasonably
-calculated to inform recipients that You have modified the Original Work.
-
-7) Warranty of Provenance and Disclaimer of Warranty. Licensor
-warrants that the copyright in and to the Original Work and the patent
-rights granted herein by Licensor are owned by the Licensor or are
-sublicensed to You under the terms of this License with the permission
-of the contributor(s) of those copyrights and patent rights. Except as
-expressly stated in the immediately proceeding sentence, the Original
-Work is provided under this License on an "AS IS" BASIS and WITHOUT
-WARRANTY, either express or implied, including, without limitation,
-the warranties of NON-INFRINGEMENT, MERCHANTABILITY or FITNESS FOR A
-PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY OF THE ORIGINAL
-WORK IS WITH YOU. This DISCLAIMER OF WARRANTY constitutes an essential
-part of this License. No license to Original Work is granted hereunder
-except under this disclaimer.
-
-8) Limitation of Liability. Under no circumstances and under no legal
-theory, whether in tort (including negligence), contract, or otherwise,
-shall the Licensor be liable to any person for any direct, indirect,
-special, incidental, or consequential damages of any character arising
-as a result of this License or the use of the Original Work including,
-without limitation, damages for loss of goodwill, work stoppage, computer
-failure or malfunction, or any and all other commercial damages or
-losses. This limitation of liability shall not apply to liability for
-death or personal injury resulting from Licensor's negligence to the
-extent applicable law prohibits such limitation. Some jurisdictions do
-not allow the exclusion or limitation of incidental or consequential
-damages, so this exclusion and limitation may not apply to You.
-
-9) Acceptance and Termination. If You distribute copies of the Original
-Work or a Derivative Work, You must make a reasonable effort under the
-circumstances to obtain the express assent of recipients to the terms of
-this License. Nothing else but this License (or another written agreement
-between Licensor and You) grants You permission to create Derivative Works
-based upon the Original Work or to exercise any of the rights granted
-in Section 1 herein, and any attempt to do so except under the terms of
-this License (or another written agreement between Licensor and You)
-is expressly prohibited by U.S. copyright law, the equivalent laws of
-other countries, and by international treaty. Therefore, by exercising
-any of the rights granted to You in Section 1 herein, You indicate Your
-acceptance of this License and all of its terms and conditions. This
-License shall terminate immediately and you may no longer exercise any
-of the rights granted to You by this License upon Your failure to honor
-the proviso in Section 1(c) herein.
-
-10) Termination for Patent Action. This License shall terminate
-automatically and You may no longer exercise any of the rights granted
-to You by this License as of the date You commence an action, including
-a cross-claim or counterclaim, against Licensor or any licensee alleging
-that the Original Work infringes a patent. This termination provision
-shall not apply for an action alleging patent infringement by combinations
-of the Original Work with other software or hardware.
-
-11) Jurisdiction, Venue and Governing Law. Any action or suit relating to this License may be brought only in the courts of a jurisdiction wherein the Licensor resides or in which Licensor conducts its primary business, and under the laws of that jurisdiction excluding its conflict-of-law provisions. The application of the United Nations Convention on Contracts for the International Sale of Goods is expressly excluded. Any use of the Original Work outside the scope of this License or after its termination shall be subject to the requirements and penalties of the U.S. Copyright Act, 17 U.S.C. § 101 et seq., the equivalent laws of other countries, and international treaty. This section shall survive the termination of this License.
-
-12) Attorneys Fees. In any action to enforce the terms of this License or
-seeking damages relating thereto, the prevailing party shall be entitled
-to recover its costs and expenses, including, without limitation,
-reasonable attorneys' fees and costs incurred in connection with such
-action, including any appeal of such action. This section shall survive
-the termination of this License.
-
-13) Miscellaneous. This License represents the complete agreement
-concerning the subject matter hereof. If any provision of this License
-is held to be unenforceable, such provision shall be reformed only to
-the extent necessary to make it enforceable.
-
-14) Definition of "You" in This License. "You" throughout this License,
-whether in upper or lower case, means an individual or a legal entity
-exercising rights under, and complying with all of the terms of, this
-License. For legal entities, "You" includes any entity that controls,
-is controlled by, or is under common control with you. For purposes of
-this definition, "control" means (i) the power, direct or indirect, to
-cause the direction or management of such entity, whether by contract
-or otherwise, or (ii) ownership of fifty percent (50%) or more of the
-outstanding shares, or (iii) beneficial ownership of such entity.
-
-15) Right to Use. You may use the Original Work in all ways not otherwise
-restricted or conditioned by this License or by law, and Licensor promises
-not to interfere with or be responsible for such uses by You.
-
-This license is Copyright (C) 2003-2004 Lawrence E. Rosen. All rights
-reserved. Permission is hereby granted to copy and distribute this
-license without modification. This license may not be modified without
-the express written permission of its copyright owner.
-
diff --git a/licenses/aldor-public-license b/licenses/aldor-public-license
deleted file mode 100644
index d6fc383e6..000000000
--- a/licenses/aldor-public-license
+++ /dev/null
@@ -1,85 +0,0 @@
-Aldor Public License 1.0
-
-Copyright 1990-2004, Aldor.org
-All rights reserved.
-
-
-The Aldor distribution contains software and documentation, some in binary
-form only, other in source and binary form. Redistribution and use in source
-and binary forms, with or without modification, are permitted provided
-that the following conditions are met:
-
-* Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
-
-* Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
-* Neither the name of Aldor.org nor the names of its contributors may be
- used to endorse or promote products derived from this software without
- specific prior written permission.
-
-* If you distribute a modified form of either source or binary code (a) you
- must make the source form of these modification available to Aldor.org
- (b) you grant Aldor.org a royalty-free license to use, modify or redistribute
- your modifications without limitation, and (c) you represent that you are
- legally entitled to grant these rights and that you are not providing
- Aldor.org with any code that violates any law or breaches any contract.
-
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
-"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
-LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
-A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
-OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
-TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-
--------------------------------------------------------------------------------
-
-
-Rationale
-
-This rationale describes the license and is not part of it.
-
-This license permits unrestricted use of the material covered if it
-is not redistributed outside the recipient's organization, subject to
-acceptance of the disclaimer of liability. Redistribution in full or in
-part, or creation of derivative works is permitted including the use of
-all or part of the material in a commercial package. The first three
-clauses that control redistribution follow the well-established BSD
-license. The fourth clause is present for two reasons:
-
-* Parts of the existing code base in the software package that this license is
- applied to require Aldor.org to make any updates available to the initial
- contributors. The clause is there to give Aldor.org the right to do this.
-
-* It reserves for major contributors, through Aldor.org, greater flexibility to
- create and exploit potential future software based on this work, and protects
- them where they have existing non-open software that is related to or shares
- some code with this work.
-
-When part or all of the code licensed here is incorporated into a distinct work
-our intent is not to lay claim to rights to the larger work as a whole: we just
-assert rights over the changes to the Aldor.org software developed in the
-process of making it fit to be embedded in the new context.
-
-This does not give Aldor.org (or anybody else) exclusive rights to changes.
-The license permits (and Aldor.org encourages) those who make changes to
-distribute the whole of their work in source form thus giving everybody (not
-just Aldor.org) rights to make commercial or non-commercial use of everything.
-
-Typical programs compiled with the Aldor compiler contain portions of the
-Aldor distribution (e.g. code inlined or linked from the library or run-time
-system). Aldor.org does not wish to limit the distribution of programs
-compiled with the Aldor compiler even though these may incidentally contain
-portions of such object code from the library or run-time system.
-
-
- Aldor.org. January 2002
diff --git a/licenses/blat b/licenses/blat
deleted file mode 100644
index 1930d023c..000000000
--- a/licenses/blat
+++ /dev/null
@@ -1,9 +0,0 @@
-CONTENTS AND COPYRIGHT
-
-This archive contains the entire source tree for Jim Kent's suite
-of biological analysis and web display programs. All files are
-copyrighted, but license is hereby granted for personal,
-academic, and non-profit use. A license is also granted
-for the contents of the top level lib directory for commercial
-users. Commercial users should contact jim_kent@pacbell.net for
-access to other modules.
diff --git a/licenses/gmap b/licenses/gmap
deleted file mode 100644
index 552d318b4..000000000
--- a/licenses/gmap
+++ /dev/null
@@ -1,36 +0,0 @@
-Copyright (c) 2005 Genentech, Inc. All rights reserved.
-
-The Developers of this software are Thomas D. Wu <twu@gene.com> and
-Colin K. Watanabe <ckw@gene.com>.
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Package"), to use, copy, and distribute copies of the Package,
-without modifications, provided that the above copyright notice and
-this permission notice are included in all copies or substantial
-portions of the Package. Distribution of this Package as part of a
-commercial software product requires prior arrangement with the
-Developers.
-
-Permission is also hereby granted, free of charge, to any person
-obtaining a copy of this Package, to modify your copy or copies of the
-Package or any portion of it, provided that you use the modified
-Package only within your corporation or organization. Distribution of
-a modified version of this Package requires prior arrangement with the
-Developers.
-
-Genome databases, map files, and other result files produced as output
-from software in this Package do not automatically fall under the
-copyright of this Package, but belong to whoever generated them, and
-may be distributed freely.
-
-IN NO EVENT SHALL GENENTECH, INC. BE LIABLE TO ANY PARTY FOR DIRECT,
-INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, OR OTHER
-LIABILITY, INCLUDING LOST PROFITS, ARISING FROM THE USE OF THIS
-SOFTWARE.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
-GENENTECH, INC. HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT,
-UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
diff --git a/licenses/phrap b/licenses/phrap
deleted file mode 100644
index 0e1df110a..000000000
--- a/licenses/phrap
+++ /dev/null
@@ -1,210 +0,0 @@
-ACADEMIC USER AGREEMENT
-
-Please read the entire agreement, fill in the information in the
-indicated positions (such as "NAME:"), and return the entire document
-to the indicated people. Please send the document as the message--not
-as an attachment.
-
-Phrap: A program for assembling DNA sequence data.
-
-Swat: A program for searching one or more DNA or protein query sequences
-against a sequence database, using (an efficient implementation of) the
-Smith-Waterman-Gotoh algorithm.
-
-Cross_Match: A general-purpose utility based on Swat for comparing any
-two sets of (long or short) DNA sequences.
-
-Phred: A program that reads DNA sequencer trace data, calls bases,
-assigns quality values to the bases, and writes the base calls and quality
-values to output files.
-
-Consed: A program for viewing and editing Phrap assemblies.
-
-To receive any of these programs you will need to agree to the following
-conditions. They should be taken seriously!
-
-1) You agree to read the documentation. We welcome feedback on any
-inaccuracies.
-
-2) You agree to report any bugs to us. (To fix bugs, we will need
-from you a dataset and a procedure that reproduces the problem; but do
-not send datasets without first emailing us to describe the nature of
-the bug.)
-
-3) You agree not to make the programs (including source code,
-executables, or any part thereof, in modified or unmodified form)
-available to anyone outside your group, and not to put them where they
-may be accessible to outside individuals without your direct knowledge
-(e.g. on a computer to which people outside your group have login
-privileges). The documentation however may be freely distributed.
-Refer any requests for the programs to the authors. If you are
-operating a computer facility which provides access to several
-independent investigators, you agree to set the permissions on the
-executables and source code to allow execute but not read access, so
-that the programs may not be copied. Investigators who want copies of
-the software for their own use must return a separate copy of this
-agreement.
-
-4) You agree not to use the programs for any commercial purpose,
-including but not limited to commercially restricted sequencing
-(defined as sequencing for which a company retains patenting or
-licensing rights regarding the sequence, or the right to restrict or
-delay dissemination of the sequence; with the sole exception that
-sequencing is not considered to be commercially restricted if it is
-federally funded and the investigators adopt the data release policies
-endorsed at the Wellcome Trust-sponsored Bermuda meeting,
-i.e. immediate release of data as it is generated).
- [If you wish to obtain the software for commercially restricted
-sequencing or any other commercial purposes, you will need to execute
-a separate licensing agreement with the University of Washington and
-pay a fee. In that case please contact:
-
-Lisa Heinz
-University of Washington TechTransfer, Digital Ventures
-Box 354990
-4311-11th Avenue NE, Suite 500
-Seattle, WA 98105-4608
-
-http://depts.washington.edu/techtran
-
-206-616-3451 FAX: 206-616-3322
-swxfr@u.washington.edu
-
-Do not contact her if the academic license applies.]
-
-5) You acknowledge that the software is experimental in nature and is
-supplied "AS IS", without obligation by the authors or the University
-of Washington to provide accompanying services or support. The entire
-risk as to the quality and performance of the Software is with you.
-UW AND THE AUTHORS EXPRESSLY DISCLAIM ANY AND ALL WARRANTIES
-REGARDING THE SOFTWARE, WHETHER EXPRESS OR IMPLIED, INCLUDING BUT NOT
-LIMITED TO WARRANTIES PERTAINING TO MERCHANTABILITY OR FITNESS FOR A
-PARTICULAR PURPOSE.
-
-6) All members of your group with access to the software agree to the
-same conditions.
-
-
-
-Having read the above, if you are still interested in obtaining the
-programs, please return a copy of this entire message (which MUST be
-included so that it is clear what you are agreeing to) by email
-together with the following information:
-
-NAME: Your name in first name/last name order.
-
-NAME:
-
-
-Example:
-NAME: John Dracula
-(Please do not use all capitals such as John DRACULA)
-
-ACKNOWLEDGEMENT: An acknowledgement that you and the members of your
-group agree to these conditions.
-
-ACKNOWLEDGEMENT:
-
-Example:
-ACKNOWLEDGEMENT: I agree to the license.
-
-PROGRAMS: Which programs you want (phrap,cross_match, and swat are
-distributed together). You must cc the message to each appropriate
-individual (Brent Ewing, David Gordon, and/or Phil Green) at the email
-addresses below so that they will know to send you the appropriate
-program.
-
-PROGRAMS:
-
-Example:
-PROGRAMS: phred, phrap, consed
-
-INSTITUTION: Your academic or government institution (give full name,
-not abbreviation)
-
-INSTITUTION:
-
-Example:
-INSTITUTION: University of Lower Transylvania
-
-DEPARTMENT: Your department
-
-DEPARTMENT:
-
-Example:
-DEPARTMENT: Department of Hematology
-
-EMAIL: Your email address for all future correspondence. Ideally this
-should be a Unix computer running a generic mail program, since
-several of the programs are sent as uuencoded files which may be
-corrupted by some mail programs.
- If this address is not at the institution & department listed above,
-please explain the discrepancy.
-
-EMAIL:
-
-Example:
-EMAIL: john.dracula@utrans.edu
-
-OS: (Consed requestors only) Which platform(s) you want Consed for:
-solaris 2.5.1, solaris 2.6, solaris 2.7 (solaris 7), solaris 8,
-solaris 9, digital unix 4.0 (or better), hp-ux 11.x, sgi irix 6.2,
-6.3, 6.4, or 6.5, linux (normal 32 bit) (Redhat 7.1-1 or better),
-linux (Itanium), linux (AMD64), ibm aix 5.2 (or better), macosx 10.2
-(Darwin kernel 6.0) (or better), or solaris-intel (2.8 or better).
-
-OS:
-
-Example:
-OS: hpux
-
-Note: Consed is not available for PC's running Windows, XP, NT, or
-2000.
-
-IP: (Consed requestors only) The ip address of the computer on which
-you will be running a web browser to download consed. This does not
-have to be the same computer as the one on which you will run consed.
-Please view page
-http://bozeman.mbt.washington.edu/consed/find_ip_address.html
-which will tell you what my computer thinks is your ip address.
-
-(Even if you think you know your ip address, firewalls and proxies can
-cause your browser to transmit a different ip address, and thus my
-webserver would deny you access to consed. So it would be a good idea
-to view the page above and send me the ip address it shows, even if
-this isn't your real ip address.)
-
-IP:
-
-Example:
-IP: 123.49.74.80
-
-
-If you want Consed/Autofinish, you must include OS and IP (above).
-Consed cannot be obtained without them.
-
-Please return this entire agreement so it is clear what you are
-agreeing to.
-
-Please send all of this, including the agreement, as part of the
-email message--not as an attachment.
-
-Send it to each of the relevant individuals below:
-
-Contacts for obtaining the programs and for questions, bug reports,
-suggestions:
-
- Phrap/cross_match/swat: Phil Green, phg (at) u.washington.edu
- Phred: Brent Ewing, bge (at) u.washington.edu
- Consed: David Gordon, gordon (at) genome.washington.edu
-
-where the " (at) " is replaced by "@".
-
-It can take up to 2 weeks for a license application to be processed,
-so please be patient.
-
-
-
-
-
-
diff --git a/profiles/categories b/profiles/categories
deleted file mode 100755
index d9e6bb317..000000000
--- a/profiles/categories
+++ /dev/null
@@ -1,18 +0,0 @@
-app-office
-dev-cpp
-dev-lang
-dev-python
-dev-tcltk
-dev-util
-media-libs
-sci-astronomy
-sci-biology
-sci-chemistry
-sci-electronics
-sci-libs
-sci-mathematics
-sci-misc
-sci-physics
-sci-visualization
-sys-cluster
-x11-libs
diff --git a/profiles/repo_name b/profiles/repo_name
deleted file mode 100755
index 8ebbbd48b..000000000
--- a/profiles/repo_name
+++ /dev/null
@@ -1 +0,0 @@
-science
diff --git a/profiles/use.local.desc b/profiles/use.local.desc
deleted file mode 100644
index 59402751e..000000000
--- a/profiles/use.local.desc
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-# This file contains descriptions of local USE flags, and the ebuilds which
-# contain them.
-# Keep it sorted.
-
-# We keep here only the new USE flags introduced by packages in the overlay.
-# Ultimately, they will be merged into the main tree.
-
-sci-astronomy/scamp:plplot - Add plplot to allow diagnostic plots during processing
-sci-biology/tgi-tools:pvm - Use sys-cluster/pvm (Parallel Virtual Machine) and build the pvmsx utility
-sci-mathematics/gretl:sourceview - Add gtksourceview support
-sci-physics/meep:hdf5 - Adds support for the Hierarchical Data Format v 5
-sys-cluster/openib:dapl - add DAPL (Direct Access Provider Library) support.
-sys-cluster/openib:ipath - add PathScale HCA support.
-sys-cluster/openib:opensm - add OpenSM Subnet Management support.
-sys-cluster/openib-mvapich2:large-cluster - build _LARGE_CLUSTER configuration
-sys-cluster/openib-mvapich2:medium-cluster - build _MEDIUM_CLUSTER configuration
diff --git a/sci-astronomy/cdsclient/ChangeLog b/sci-astronomy/cdsclient/ChangeLog
deleted file mode 100644
index 424316f6d..000000000
--- a/sci-astronomy/cdsclient/ChangeLog
+++ /dev/null
@@ -1,13 +0,0 @@
-# ChangeLog for sci-astronomy/cdsclient
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org>
- +cdsclient-2.87.ebuild:
- Version bump.
-
-*cdsclient-2.85 (19 Sep 2006)
-
- 19 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> cdsclient-2.85.ebuild
- Initial import.
-
diff --git a/sci-astronomy/cdsclient/Manifest b/sci-astronomy/cdsclient/Manifest
deleted file mode 100644
index 547354c27..000000000
--- a/sci-astronomy/cdsclient/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST cdsclient-2.87.tar.gz 77678 RMD160 eedcb7af62ac2e2294947c674d4bcde92d92729b SHA1 37c343e715b354c576a50c4d7e7a82d06e99b85a SHA256 dc5242c149caabf96e03ddc2f4566963654dafd1b838210172f61c78f9c367df
-EBUILD cdsclient-2.87.ebuild 1018 RMD160 4c62549847d6b6e94493e3c3367b76a614ffcda3 SHA1 89ba9c3946fce6ca67e265c1e70546dec1937d1c SHA256 974e590bfc1311a38e584897281f2a82412d18d17c23560de2d0a412ea180e30
-MD5 d378b770b4242b6ba2bc364e8385d315 cdsclient-2.87.ebuild 1018
-RMD160 4c62549847d6b6e94493e3c3367b76a614ffcda3 cdsclient-2.87.ebuild 1018
-SHA256 974e590bfc1311a38e584897281f2a82412d18d17c23560de2d0a412ea180e30 cdsclient-2.87.ebuild 1018
-MISC ChangeLog 345 RMD160 7b2843c420c670ffc7082c76b0459b40c8f278a4 SHA1 cd6f3265999d6269bf5c379a309c4d6609c30504 SHA256 31f2f8f9d781ea0083940519d3eeb08af27e56263c04b59c96f8c6d979621ffc
-MD5 193182fe52e3f654bbfb1fee63f52dd9 ChangeLog 345
-RMD160 7b2843c420c670ffc7082c76b0459b40c8f278a4 ChangeLog 345
-SHA256 31f2f8f9d781ea0083940519d3eeb08af27e56263c04b59c96f8c6d979621ffc ChangeLog 345
-MISC metadata.xml 420 RMD160 110bdf15554e88e236e4a9e40ba8a3470d696c96 SHA1 a7a8719fb8473e02ae8b70f88bd51a147c6da202 SHA256 343e595f7f12b920acd268121fa2c429d269a6e2c2690d4c917ea4855c7c687c
-MD5 6eb66bf2d1a56aef9d4b0cfec4b3fd9d metadata.xml 420
-RMD160 110bdf15554e88e236e4a9e40ba8a3470d696c96 metadata.xml 420
-SHA256 343e595f7f12b920acd268121fa2c429d269a6e2c2690d4c917ea4855c7c687c metadata.xml 420
-MD5 994a09b44c09f6b6eb7f8c6cc6b65742 files/digest-cdsclient-2.87 241
-RMD160 7e03670a424250fa14d403098afd434d6659f53d files/digest-cdsclient-2.87 241
-SHA256 158f1525ad8b0cf0dba3566682ef2969011c55dbb1c93ea971d1d7b9e705913b files/digest-cdsclient-2.87 241
diff --git a/sci-astronomy/cdsclient/cdsclient-2.87.ebuild b/sci-astronomy/cdsclient/cdsclient-2.87.ebuild
deleted file mode 100644
index 5c58c9f28..000000000
--- a/sci-astronomy/cdsclient/cdsclient-2.87.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit multilib
-
-DESCRIPTION="Collection of scripts to access the CDS databases"
-HOMEPAGE="http://cdsweb.u-strasbg.fr/doc/cdsclient.html"
-SRC_URI="ftp://cdsarc.u-strasbg.fr/pub/sw/${P}.tar.gz"
-LICENSE="as-is"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND=""
-RDEPEND="app-shells/tcsh"
-
-RESTRICT="nostrip"
-
-src_unpack() {
- unpack ${A}
- # remove non standard "mantex" page
- sed -i \
- -e 's/aclient.tex//' \
- "${S}"/configure || die "sed failed"
- # remove useless version file
- sed -i \
- -e 's/install_shs install_info/install_shs/' \
- "${S}"/Makefile.in || die "sed failed"
-}
-
-src_compile() {
- econf || die "econf failed"
- emake C_OPT="${CFLAGS}" || die "emake failed"
-}
-
-
-src_install() {
- dodir /usr/bin
- dodir /usr/share/man
- dodir /usr/$(get_libdir)
- emake \
- PREFIX="${D}"/usr \
- MANDIR="${D}"/usr/share/man \
- LIBDIR="${D}"/usr/$(get_libdir) \
- install || die "emake install failed"
-}
diff --git a/sci-astronomy/cdsclient/files/digest-cdsclient-2.87 b/sci-astronomy/cdsclient/files/digest-cdsclient-2.87
deleted file mode 100644
index 2a05c7f2d..000000000
--- a/sci-astronomy/cdsclient/files/digest-cdsclient-2.87
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 14283d712b3f93afca2ee5c32c8cfb11 cdsclient-2.87.tar.gz 77678
-RMD160 eedcb7af62ac2e2294947c674d4bcde92d92729b cdsclient-2.87.tar.gz 77678
-SHA256 dc5242c149caabf96e03ddc2f4566963654dafd1b838210172f61c78f9c367df cdsclient-2.87.tar.gz 77678
diff --git a/sci-astronomy/cdsclient/metadata.xml b/sci-astronomy/cdsclient/metadata.xml
deleted file mode 100644
index 7d603f33d..000000000
--- a/sci-astronomy/cdsclient/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
- The cdsclient package is a set of C and csh routines which can be
- built on Unix stations or PCs running Linux, which once compiled allow
- to query some databases located at CDS or on mirrors over the
- network.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/cpl/ChangeLog b/sci-astronomy/cpl/ChangeLog
deleted file mode 100644
index 3fc3f612c..000000000
--- a/sci-astronomy/cpl/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for sci-astronomy/cpl
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org> -cpl-3.0.ebuild,
- +cpl-3.1.ebuild:
- Version bump.
-
-*cpl-3.0 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- +cpl-3.0.ebuild, +metadata.xml.
- Initial import.
- \ No newline at end of file
diff --git a/sci-astronomy/cpl/Manifest b/sci-astronomy/cpl/Manifest
deleted file mode 100644
index 814bb68d2..000000000
--- a/sci-astronomy/cpl/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST cpl-3.1.tar.gz 1971557 RMD160 70fd7a764743203c740bbf43e878292feab879ff SHA1 e564d89ee3018f81d75da44c4f861b6aef93c1cb SHA256 d98a51f4606c677151b57b8b2576803a8e18b145b74921ef3948f60206ec8085
-EBUILD cpl-3.1.ebuild 618 RMD160 89499f7d55620078c249b95794b34aa8dd28dd25 SHA1 33f60f8a82ac6e664ff4592ad35efc5d088d133b SHA256 7c86df593f9053b4530a92b4dfee92c75f039d8f30f51c5b65c45e3200f2a436
-MD5 fbc6693702fc7517b93e5ddee906e54d cpl-3.1.ebuild 618
-RMD160 89499f7d55620078c249b95794b34aa8dd28dd25 cpl-3.1.ebuild 618
-SHA256 7c86df593f9053b4530a92b4dfee92c75f039d8f30f51c5b65c45e3200f2a436 cpl-3.1.ebuild 618
-MISC ChangeLog 355 RMD160 11ab72f28cd1b842e0a933e43a937d4241f7bb41 SHA1 49eea80ef4e138306853e879dfef6adb56be3afb SHA256 7132771ff2f54997da312e48808bcef6d9afdc8c611008c6d7c4bbe5bf02873d
-MD5 a81d6682c5165f3e502ade4578451ab1 ChangeLog 355
-RMD160 11ab72f28cd1b842e0a933e43a937d4241f7bb41 ChangeLog 355
-SHA256 7132771ff2f54997da312e48808bcef6d9afdc8c611008c6d7c4bbe5bf02873d ChangeLog 355
-MISC metadata.xml 831 RMD160 954a38f6449d8d3e9ff0c63abb55154768adc088 SHA1 97a67157b2448b61ba012e89b60ef73108235873 SHA256 7d1222b0691f211f2030e22c5481f3a6cb01e95486f904030dc1f2136b446149
-MD5 704b43116c79bc139d04f88c4c05b349 metadata.xml 831
-RMD160 954a38f6449d8d3e9ff0c63abb55154768adc088 metadata.xml 831
-SHA256 7d1222b0691f211f2030e22c5481f3a6cb01e95486f904030dc1f2136b446149 metadata.xml 831
-MD5 7e83e869d6b796044bf7f1bf279ef831 files/digest-cpl-3.1 226
-RMD160 16770b4f9fb2dbdd68b708d3b31a3eb6b85cff4b files/digest-cpl-3.1 226
-SHA256 eba2794532f7dfda2bdf408c17f253bc05a03a8d60bbe0f2cdded4c7b28ad450 files/digest-cpl-3.1 226
diff --git a/sci-astronomy/cpl/cpl-3.1.ebuild b/sci-astronomy/cpl/cpl-3.1.ebuild
deleted file mode 100644
index 645e9cf50..000000000
--- a/sci-astronomy/cpl/cpl-3.1.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="ESO common pipeline library for astronomical data reduction"
-HOMEPAGE="http://www.eso.org/observing/cpl/"
-SRC_URI="ftp://ftp.hq.eso.org/pub/${PN}/${P}.tar.gz"
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc"
-
-DEPEND=">=sci-libs/qfits-6.2"
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README AUTHORS NEWS TODO BUGS ChangeLog
- if use doc; then
- make htmldir=usr/share/doc/${PF} install-html \
- || die "make install-html failed"
- fi
-}
diff --git a/sci-astronomy/cpl/files/digest-cpl-3.1 b/sci-astronomy/cpl/files/digest-cpl-3.1
deleted file mode 100644
index 2b60d2994..000000000
--- a/sci-astronomy/cpl/files/digest-cpl-3.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 b97abdebb563c302d147bb97978c321e cpl-3.1.tar.gz 1971557
-RMD160 70fd7a764743203c740bbf43e878292feab879ff cpl-3.1.tar.gz 1971557
-SHA256 d98a51f4606c677151b57b8b2576803a8e18b145b74921ef3948f60206ec8085 cpl-3.1.tar.gz 1971557
diff --git a/sci-astronomy/cpl/metadata.xml b/sci-astronomy/cpl/metadata.xml
deleted file mode 100644
index 2a13944f0..000000000
--- a/sci-astronomy/cpl/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-The Common Pipeline Library (CPL) comprises a set of ISO-C libraries
-that provide a comprehensive, efficient and robust software
-toolkit. It forms a basis for the creation of automated astronomical
-data-reduction tasks (known as "pipelines"). CPL Title Graphic The CPL
-was developed to standardise the way VLT instrument pipelines are
-built, to shorten their development cycle and to ease their
-maintenance. However, it may be more generally applied to any similar
-application, and the details of the CPL code have been engineered in a
-way to make the library portable and flexible, as well as minimising
-external dependencies.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/esorex/ChangeLog b/sci-astronomy/esorex/ChangeLog
deleted file mode 100644
index 04a23467a..000000000
--- a/sci-astronomy/esorex/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for sci-astronomy/esorex
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org> -esorex-3.6.ebuild,
- +esorex-3.6.1.ebuild:
- Version bump.
-
-*esorex-3.6 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- +esorex-3.6.ebuild, +metadata.xml.
- Initial import.
- \ No newline at end of file
diff --git a/sci-astronomy/esorex/Manifest b/sci-astronomy/esorex/Manifest
deleted file mode 100644
index ec2b545c5..000000000
--- a/sci-astronomy/esorex/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST esorex-3.6.1.tar.gz 724825 RMD160 ce94b38c4800e5b88d481db36cac3dbdc6a965d2 SHA1 a07271d4baed4a4b0edd85f7fb172d9a0e234e7d SHA256 cae6b17f7ef9eb66e5898b60bbfcd0fddb1af2d8b79ed0f792bcb3772e7a3216
-EBUILD esorex-3.6.1.ebuild 546 RMD160 68756a5cc917a39d3934189a02e17f129992cb03 SHA1 be98fcb153bee10521527595ba8aabed3fe7b481 SHA256 47a34ea7bd1becfa2e045fce0ae59d26354fcc5c7697d337c000bacbd3409277
-MD5 889aa01078755b2609feb94561abe4e6 esorex-3.6.1.ebuild 546
-RMD160 68756a5cc917a39d3934189a02e17f129992cb03 esorex-3.6.1.ebuild 546
-SHA256 47a34ea7bd1becfa2e045fce0ae59d26354fcc5c7697d337c000bacbd3409277 esorex-3.6.1.ebuild 546
-MISC ChangeLog 372 RMD160 fb067a660b1ecd6ecf44e62f23a84bf2076b46cf SHA1 49237b69bf75c3ec132313437579676dee9eac50 SHA256 b55dc336b090b1e53312ef9b5070c9284da533a41be828ce09cc7b380fef7cf4
-MD5 6d82e2e930a1c320bc2c99542b7940cf ChangeLog 372
-RMD160 fb067a660b1ecd6ecf44e62f23a84bf2076b46cf ChangeLog 372
-SHA256 b55dc336b090b1e53312ef9b5070c9284da533a41be828ce09cc7b380fef7cf4 ChangeLog 372
-MISC metadata.xml 893 RMD160 c1619c4f959c27d9042fcaba4e716ca685d9d831 SHA1 42826c66a8ff7b789648441c617eea57d8688177 SHA256 145c6d216327ba207bf3d19435de54ff30d3a0df8169f34e70c558b97aa62a19
-MD5 0b92acf377bf0b3b81f15f25d6eb2e08 metadata.xml 893
-RMD160 c1619c4f959c27d9042fcaba4e716ca685d9d831 metadata.xml 893
-SHA256 145c6d216327ba207bf3d19435de54ff30d3a0df8169f34e70c558b97aa62a19 metadata.xml 893
-MD5 8062b072672683d5a8fd3f21c54e7710 files/digest-esorex-3.6.1 238
-RMD160 4b30cd024a0f1cacf1aaae199eb8fef499ed5ec0 files/digest-esorex-3.6.1 238
-SHA256 0045281c24f2dc55037e39bec42e58fdb44b355e1189c499b845f8c5f11dac25 files/digest-esorex-3.6.1 238
diff --git a/sci-astronomy/esorex/esorex-3.6.1.ebuild b/sci-astronomy/esorex/esorex-3.6.1.ebuild
deleted file mode 100644
index 11468a645..000000000
--- a/sci-astronomy/esorex/esorex-3.6.1.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="ESO Recipe Execution Tool to exec cpl scripts"
-HOMEPAGE="http://www.eso.org/observing/cpl/esorex"
-SRC_URI="ftp://ftp.hq.eso.org/pub/cpl/${P}.tar.gz"
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND=">=sci-astronomy/cpl-3.1"
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README AUTHORS NEWS TODO BUGS ChangeLog
- insinto /usr/share/doc/${PF}
- doins examples/*
-}
diff --git a/sci-astronomy/esorex/files/digest-esorex-3.6.1 b/sci-astronomy/esorex/files/digest-esorex-3.6.1
deleted file mode 100644
index 80d2a1be8..000000000
--- a/sci-astronomy/esorex/files/digest-esorex-3.6.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 1221a0cf3d366767b768824036dc0681 esorex-3.6.1.tar.gz 724825
-RMD160 ce94b38c4800e5b88d481db36cac3dbdc6a965d2 esorex-3.6.1.tar.gz 724825
-SHA256 cae6b17f7ef9eb66e5898b60bbfcd0fddb1af2d8b79ed0f792bcb3772e7a3216 esorex-3.6.1.tar.gz 724825
diff --git a/sci-astronomy/esorex/metadata.xml b/sci-astronomy/esorex/metadata.xml
deleted file mode 100644
index d65df3197..000000000
--- a/sci-astronomy/esorex/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-EsoRex is the ESO Recipe Execution Tool. It can list, configure and
-execute CPL-based recipes from the command line. One of the features
-provided by the CPL is the ability to create data-reduction algorithms
-that run as plugins (dynamic libraries). These are called recipes and
-are one of the main aspects of the CPL data-reduction development
-environment. As these recipes are dynamic libraries, it is not
-possible to run them directly from the command line. However, ESO
-provides several tools to do this, thus saving recipe developers the
-need to write such an application themselves. One of these is GASGANO
-(a GUI-based tool) and the other is EsoRex (which runs from the
-command line.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/scamp/ChangeLog b/sci-astronomy/scamp/ChangeLog
deleted file mode 100644
index 0407c9d72..000000000
--- a/sci-astronomy/scamp/ChangeLog
+++ /dev/null
@@ -1,29 +0,0 @@
-# ChangeLog for sci-astronomy/scamp
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 02 Aug 2007; Sébastien Fabbro <bicatali@gentoo.org> -scamp-1.3.8.ebuild,
- +scamp-1.3.11.ebuild:
- Version bump
-
- 18 May 2007; Sébastien Fabbro <bicatali@gentoo.org> -scamp-1.3.5.ebuild,
- +scamp-1.3.8.ebuild:
- Version bump
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org>
- -scamp-1.2.11-r1.ebuild, +scamp-1.3.5.ebuild:
- Version bump.
-
- 29 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- Removed icc flag, too buggy.
-
-*scamp-1.2.11-r1 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt> +scamp-1.2.11-r1.ebuild:
- Removed flag filtering, some cleaning.
-
-*scamp-1.2.11 (19 Sep 2006)
-
- 19 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> +scamp-1.2.11.ebuild:
- Initial import.
-
diff --git a/sci-astronomy/scamp/Manifest b/sci-astronomy/scamp/Manifest
deleted file mode 100644
index ac2170c83..000000000
--- a/sci-astronomy/scamp/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST scamp-1.3.11.tar.gz 17721447 RMD160 57afc4e540776dd52b89f4e5d7d1daf255c158f9 SHA1 6d69401c2343f9bba7517956b763db5965156c02 SHA256 c811de1f6a820f9b3b2159086812628e5db67e6651ea11bf378b0534e7cc00da
-EBUILD scamp-1.3.11.ebuild 1592 RMD160 22d8e89ea416bea9828e7d8c1d30e642a789a0ff SHA1 e36ce71a69f89b279362fc648171efd61d7e894c SHA256 3369e8f23a04dfa07dfb568b5baf87fd9587d7e3985ed304bd86de25cd64a4ca
-MD5 d57b46d9f9c533d219a33bb173799dea scamp-1.3.11.ebuild 1592
-RMD160 22d8e89ea416bea9828e7d8c1d30e642a789a0ff scamp-1.3.11.ebuild 1592
-SHA256 3369e8f23a04dfa07dfb568b5baf87fd9587d7e3985ed304bd86de25cd64a4ca scamp-1.3.11.ebuild 1592
-MISC ChangeLog 821 RMD160 3115ff68b9a6bfb68ef41d53950c76b660de5f53 SHA1 686c7af2e65109f1e018a8162a40a4ed6f96832c SHA256 a4ff1f90692573379fe557d8cd266cef0c3f16b661d6f6cf07c12f9fe9e5f208
-MD5 4a225f3d5ce00d1123b790dadc8e3d62 ChangeLog 821
-RMD160 3115ff68b9a6bfb68ef41d53950c76b660de5f53 ChangeLog 821
-SHA256 a4ff1f90692573379fe557d8cd266cef0c3f16b661d6f6cf07c12f9fe9e5f208 ChangeLog 821
-MISC metadata.xml 378 RMD160 51f393d1e79301572f09a1c7bce449e14289f9a1 SHA1 0115b4e450192e8eec4a1236eba31e871eecc055 SHA256 9a28c3abd3899bd79ae8aa958492e89a5fb644f2102a714862a8de7e0bcb1706
-MD5 e9b8ba6d006f70cd7f4ddb67b28880b8 metadata.xml 378
-RMD160 51f393d1e79301572f09a1c7bce449e14289f9a1 metadata.xml 378
-SHA256 9a28c3abd3899bd79ae8aa958492e89a5fb644f2102a714862a8de7e0bcb1706 metadata.xml 378
-MD5 104f7b5ab9adf97ad32ec556e4c4f5ab files/digest-scamp-1.3.11 244
-RMD160 9d513ddbf0997dc0896b589e310f81b404dbbd1e files/digest-scamp-1.3.11 244
-SHA256 5b1d42ad46bf8d075e4f7573cbacc896b5ea57aa3ea356d69e3702983dc776e4 files/digest-scamp-1.3.11 244
diff --git a/sci-astronomy/scamp/files/digest-scamp-1.3.11 b/sci-astronomy/scamp/files/digest-scamp-1.3.11
deleted file mode 100644
index 97f6b5e98..000000000
--- a/sci-astronomy/scamp/files/digest-scamp-1.3.11
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 1c4370faa4092f7b9975e20bc4931581 scamp-1.3.11.tar.gz 17721447
-RMD160 57afc4e540776dd52b89f4e5d7d1daf255c158f9 scamp-1.3.11.tar.gz 17721447
-SHA256 c811de1f6a820f9b3b2159086812628e5db67e6651ea11bf378b0534e7cc00da scamp-1.3.11.tar.gz 17721447
diff --git a/sci-astronomy/scamp/metadata.xml b/sci-astronomy/scamp/metadata.xml
deleted file mode 100644
index 60a0fc95d..000000000
--- a/sci-astronomy/scamp/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
- SCAMP computes astrometric and photometric solutions from SExtractor catalogs
- and stores them in header files. These headers files can be read by SWarp to
- coadd images.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/scamp/scamp-1.3.11.ebuild b/sci-astronomy/scamp/scamp-1.3.11.ebuild
deleted file mode 100644
index 788fb6970..000000000
--- a/sci-astronomy/scamp/scamp-1.3.11.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Computes astrometric and photometric solutions for astronomical images"
-HOMEPAGE="http://terapix.iap.fr/soft/scamp"
-SRC_URI="ftp://ftp.iap.fr/pub/from_users/bertin/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc threads plplot"
-RESTRICT="test"
-
-# right now just work with ATLAS implementations
-# need more work on virtual/cblas eselect for more blas/lapack impl.
-# or need clapack.
-RDEPEND="sci-astronomy/cdsclient
- >=sci-libs/blas-atlas-3.7.11-r1
- >=sci-libs/lapack-atlas-3.7.11-r1
- >=sci-libs/fftw-3
- plplot? ( >=sci-libs/plplot-5.1 )"
-
-DEPEND="${RDEPEND}"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- # get gentoo threaded blas library name right
- sed -i \
- -e 's/ptcblas/cblas/g' \
- configure || die "sed failed"
-}
-
-src_compile() {
-
- local myconf
- [[ "$(tc-getCC)" == "icc" ]] \
- && myconf="${myconf} --enable-icc"
-
- local myatlas=atlas
- use threads && \
- [[ -f /usr/$(get_libdir)/blas/threaded-atlas/libcblas.a ]] && \
- myatlas="threaded-atlas"
- local ldpath="/usr/$(get_libdir)/blas/${myatlas}"
- ldpath="${ldpath}:/usr/$(get_libdir)/lapack/${myatlas}"
-
- econf \
- $(use_with plplot) \
- $(use_enable threads) \
- "${myconf}" \
- || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install () {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc AUTHORS ChangeLog HISTORY README THANKS BUGS
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins doc/${PN}.pdf
- fi
-}
diff --git a/sci-astronomy/sextractor/ChangeLog b/sci-astronomy/sextractor/ChangeLog
deleted file mode 100644
index 445f0675b..000000000
--- a/sci-astronomy/sextractor/ChangeLog
+++ /dev/null
@@ -1,32 +0,0 @@
-# ChangeLog for sci-astronomy/sextractor
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 02 Aug 2007; Sébastien Fabbro <bicatali@gentoo.org>
- sextractor-2.5.0-r1.ebuild:
- filter optim flags
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org>
- sextractor-2.5.0-r1.ebuild:
- Cleaning, adapting for new portage.
-
- 29 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- Removed icc flag, too buggy.
-
-*sextractor-2.5.0-r1 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt>
- +sextractor-2.5.0-r1.ebuild -sextractor-2.5.0.ebuild
- -sextractor-2.4.4.ebuild: removed flag filtering, cleaning,
- removed old versions.
-
-*sextractor-2.5.0 (06 Sep 2006)
-
- 06 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> +sextractor-2.5.0.ebuild:
- Version bump.
-
-*sextractor-2.4.4 (27 Nov 2005)
-
- 26 Nov 2005; Sebastien Fabbro <seb@ist.utl.pt> +sextractor-2.4.4.ebuild:
- Initial import. Close bug #65684
-
diff --git a/sci-astronomy/sextractor/Manifest b/sci-astronomy/sextractor/Manifest
deleted file mode 100644
index 8e12662a4..000000000
--- a/sci-astronomy/sextractor/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST sextractor-2.5.0.tar.gz 2321708 RMD160 336e3a47f57416ad50bbbdd2afb4ff7e858556d0 SHA1 84e111ea0796428d9336de7add3820575fd7d4cb SHA256 786f987818546d9b72fea7e786f040b63e31fbc46325deb58929251065573303
-EBUILD sextractor-2.5.0-r1.ebuild 1163 RMD160 328a5ee10e4e376f62a4ba9a0ae0454076b0f37f SHA1 b23d9636808717f3efbc1f24b111c7ea78a59895 SHA256 7cbcb59ab0b5387b6c744544772501fc0ea58879296e796ddd63c38c026c498e
-MD5 518e696375129e401a5f68a63407e853 sextractor-2.5.0-r1.ebuild 1163
-RMD160 328a5ee10e4e376f62a4ba9a0ae0454076b0f37f sextractor-2.5.0-r1.ebuild 1163
-SHA256 7cbcb59ab0b5387b6c744544772501fc0ea58879296e796ddd63c38c026c498e sextractor-2.5.0-r1.ebuild 1163
-MISC ChangeLog 937 RMD160 54da2bfecc18b186fd33624caabcdea6bd621ce1 SHA1 4d6863d7c0aa62eec2b8d76fa6d7b2a67a25ddaa SHA256 5ab04874bbd2f07b929637b1bedded6938b98fef555044da2e743e7b4cdc5a75
-MD5 e1c6d87eb5e39a3ca58aac3d952f686a ChangeLog 937
-RMD160 54da2bfecc18b186fd33624caabcdea6bd621ce1 ChangeLog 937
-SHA256 5ab04874bbd2f07b929637b1bedded6938b98fef555044da2e743e7b4cdc5a75 ChangeLog 937
-MISC metadata.xml 543 RMD160 8b6f4b17ec88b648a25b6a45cc07aa62b8530e6a SHA1 c85e639d87aae9e2b94fe1f67f5ffa724e080374 SHA256 45445f0c002e393359b2d580ea0f0d991b15cb01c829e6d0c1ead8e53e6bc1dc
-MD5 1a1bfe3a85dfca78716d023150eac7c7 metadata.xml 543
-RMD160 8b6f4b17ec88b648a25b6a45cc07aa62b8530e6a metadata.xml 543
-SHA256 45445f0c002e393359b2d580ea0f0d991b15cb01c829e6d0c1ead8e53e6bc1dc metadata.xml 543
-MD5 b523c6027f0e84e5301b450f864fa281 files/digest-sextractor-2.5.0-r1 253
-RMD160 dd96d658134de82cd8014bd81a07e648d5960c5d files/digest-sextractor-2.5.0-r1 253
-SHA256 1df35e75f3ed448e81e49c59e66a1c21e3977562281785a65fe7c90b13fa98f3 files/digest-sextractor-2.5.0-r1 253
diff --git a/sci-astronomy/sextractor/files/digest-sextractor-2.5.0-r1 b/sci-astronomy/sextractor/files/digest-sextractor-2.5.0-r1
deleted file mode 100644
index 8926b3c2d..000000000
--- a/sci-astronomy/sextractor/files/digest-sextractor-2.5.0-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3dede44685b582ad5ee03f5b69423530 sextractor-2.5.0.tar.gz 2321708
-RMD160 336e3a47f57416ad50bbbdd2afb4ff7e858556d0 sextractor-2.5.0.tar.gz 2321708
-SHA256 786f987818546d9b72fea7e786f040b63e31fbc46325deb58929251065573303 sextractor-2.5.0.tar.gz 2321708
diff --git a/sci-astronomy/sextractor/metadata.xml b/sci-astronomy/sextractor/metadata.xml
deleted file mode 100644
index cd5cd149f..000000000
--- a/sci-astronomy/sextractor/metadata.xml
+++ /dev/null
@@ -1,13 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-SExtractor (Source Extractor) is a program that builds a catalogue of
-objects from an astronomical image. Although it is particularly
-oriented towards reduction of large scale galaxy-survey data, it
-performs rather well on moderately crowded star fields. It has the
-ability to automatically separate stars and galaxy using neural
-networks.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/sextractor/sextractor-2.5.0-r1.ebuild b/sci-astronomy/sextractor/sextractor-2.5.0-r1.ebuild
deleted file mode 100644
index 5c4200427..000000000
--- a/sci-astronomy/sextractor/sextractor-2.5.0-r1.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="Extract catalogs of sources from astronomical FITS images."
-HOMEPAGE="http://terapix.iap.fr/soft/sextractor"
-SRC_URI="ftp://ftp.iap.fr/pub/from_users/bertin/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc"
-DEPEND=""
-RESTRICT="test"
-
-src_compile() {
- CONFDIR=/usr/share/${PN}/config
- # change default configuration files location from current dir
- sed -i -e "s:default\.:${CONFDIR}/default\.:" src/preflist.h
- # buggy with >= O2
- replace-flags -O[2-9] -O1
- local myconf
- [[ "$(tc-getCC)" == "icc" ]] \
- && myconf="${myconf} --enable-icc"
- econf "${myconf}" || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install () {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc AUTHORS BUGS ChangeLog HISTORY README THANKS
- insinto ${CONFDIR}
- doins config/*
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins doc/*
- fi
-}
-
-pkg_postinst() {
- elog "SExtractor configuration files are located"
- elog "in ${CONFDIR} and loaded by default."
-}
diff --git a/sci-astronomy/skycat/ChangeLog b/sci-astronomy/skycat/ChangeLog
deleted file mode 100644
index abdd60576..000000000
--- a/sci-astronomy/skycat/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-astronomy/skycat
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*skycat-3.0.1 (14 Sep 2006)
-
- 14 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> +skycat-3.0.1.ebuild:
- +metadata.xml,
- +files/skycat-3.0.1-m4.patch,
- +files/skycat-3.0.1-gcc41.patch
- Initial import. Closes bug #65665.
-
diff --git a/sci-astronomy/skycat/Manifest b/sci-astronomy/skycat/Manifest
deleted file mode 100644
index a7eac2329..000000000
--- a/sci-astronomy/skycat/Manifest
+++ /dev/null
@@ -1,24 +0,0 @@
-AUX skycat-3.0.1-gcc41.patch 14240 RMD160 950963538e531fb593c9019fcd967bde97d1252c SHA1 9d3e184de66966a988a659938eda8cd93755f409 SHA256 9dacdc5dbfc527d7642078ed01b7da3cf035af54e97b1a522705ad21685e3fc5
-MD5 68c457e6e7f55972c5fbcdaf9957e831 files/skycat-3.0.1-gcc41.patch 14240
-RMD160 950963538e531fb593c9019fcd967bde97d1252c files/skycat-3.0.1-gcc41.patch 14240
-SHA256 9dacdc5dbfc527d7642078ed01b7da3cf035af54e97b1a522705ad21685e3fc5 files/skycat-3.0.1-gcc41.patch 14240
-AUX skycat-3.0.1-m4.patch 4816 RMD160 c142a289446d7c6fbedd15e384d9039a44d389d6 SHA1 2a0a5296f3a59fc5e1c314ab50ac8977b8af937c SHA256 daae999f2d7dbd144ff212e0be86aef98919b9daa159326d8ed6fd44b9d6f576
-MD5 c961a30eab7f8e6d7492df2cdcf2be77 files/skycat-3.0.1-m4.patch 4816
-RMD160 c142a289446d7c6fbedd15e384d9039a44d389d6 files/skycat-3.0.1-m4.patch 4816
-SHA256 daae999f2d7dbd144ff212e0be86aef98919b9daa159326d8ed6fd44b9d6f576 files/skycat-3.0.1-m4.patch 4816
-DIST skycat-3.0.1.tar.gz 3175379 RMD160 38abe19c590b7b2413a749024df9f5136d701008 SHA1 89d2417915ca59934baa491b039137ab32208af0 SHA256 cfaede46a125adebe61af84c9fb0ac89b3d450d748915ee7761678df6c48b884
-EBUILD skycat-3.0.1.ebuild 1085 RMD160 9a04162806bd595d3d91daa6aa2ba1f7a06defee SHA1 0064298d5eefe6d46bb6402daa65da1c2f2e0522 SHA256 2c30c743540b0cd8ca4423796d8d6c95e96799c1f0c3f55d874f5f872f1e7034
-MD5 13ee5f5b7e4650fd046951151103de87 skycat-3.0.1.ebuild 1085
-RMD160 9a04162806bd595d3d91daa6aa2ba1f7a06defee skycat-3.0.1.ebuild 1085
-SHA256 2c30c743540b0cd8ca4423796d8d6c95e96799c1f0c3f55d874f5f872f1e7034 skycat-3.0.1.ebuild 1085
-MISC ChangeLog 344 RMD160 39f85b16e2549ae48a5bcd1454311a76ed13ae12 SHA1 4e5115186c63a7ec90607a95d54574d7fb841783 SHA256 fe66be2d39228623bae6381983cb2ec1ece60ed2dde160fe0c23ad0060828432
-MD5 313a26a32e5d40b479d124f1b83d541c ChangeLog 344
-RMD160 39f85b16e2549ae48a5bcd1454311a76ed13ae12 ChangeLog 344
-SHA256 fe66be2d39228623bae6381983cb2ec1ece60ed2dde160fe0c23ad0060828432 ChangeLog 344
-MISC metadata.xml 380 RMD160 481c8ad8d384727eb398f748140b4a1c38519b25 SHA1 7eae9ff4ee349657cb1ef1233605e60a5670af06 SHA256 ddcee971b362bdc562b112d6d2857cd9634156c17ac2e33e07e83e9ff40c4754
-MD5 d40f9f9d7e916176a43612807aae4b5f metadata.xml 380
-RMD160 481c8ad8d384727eb398f748140b4a1c38519b25 metadata.xml 380
-SHA256 ddcee971b362bdc562b112d6d2857cd9634156c17ac2e33e07e83e9ff40c4754 metadata.xml 380
-MD5 5de1d80e224de64b8dbaa88703b7eeea files/digest-skycat-3.0.1 241
-RMD160 e066277e035264308f187c0b114e626aa5b797f2 files/digest-skycat-3.0.1 241
-SHA256 e388a9c611e1813beb6bacae108d734888e984a01f9dffdb41216beb775e4f1f files/digest-skycat-3.0.1 241
diff --git a/sci-astronomy/skycat/files/digest-skycat-3.0.1 b/sci-astronomy/skycat/files/digest-skycat-3.0.1
deleted file mode 100644
index f0cd0f92c..000000000
--- a/sci-astronomy/skycat/files/digest-skycat-3.0.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0bc50abb95b4a6401bb7210dbf7d1fed skycat-3.0.1.tar.gz 3175379
-RMD160 38abe19c590b7b2413a749024df9f5136d701008 skycat-3.0.1.tar.gz 3175379
-SHA256 cfaede46a125adebe61af84c9fb0ac89b3d450d748915ee7761678df6c48b884 skycat-3.0.1.tar.gz 3175379
diff --git a/sci-astronomy/skycat/files/skycat-3.0.1-gcc41.patch b/sci-astronomy/skycat/files/skycat-3.0.1-gcc41.patch
deleted file mode 100644
index 0bd7b0750..000000000
--- a/sci-astronomy/skycat/files/skycat-3.0.1-gcc41.patch
+++ /dev/null
@@ -1,384 +0,0 @@
-diff -Nur skycat-3.0.1/astrotcl/generic/Fits_IO.h skycat-3.0.1.new/astrotcl/generic/Fits_IO.h
---- skycat-3.0.1/astrotcl/generic/Fits_IO.h 2006-01-12 16:43:52.000000000 +0000
-+++ skycat-3.0.1.new/astrotcl/generic/Fits_IO.h 2006-09-14 11:34:20.000000000 +0100
-@@ -49,7 +49,7 @@
- // extend the size of the FITS header by one header block
- int extendHeader();
-
-- static void* FitsIO::reallocFile(void* p, size_t newsize);
-+ static void* reallocFile(void* p, size_t newsize);
-
- protected:
- // Check that this object represents a FITS file (and not just some kind of memory)
-diff -Nur skycat-3.0.1/rtd/generic/ImageData.h skycat-3.0.1.new/rtd/generic/ImageData.h
---- skycat-3.0.1/rtd/generic/ImageData.h 2006-01-12 16:39:00.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/ImageData.h 2006-09-14 11:36:42.000000000 +0100
-@@ -348,16 +348,16 @@
- int getSpectrum(double* xyvalues, int x0, int y0, int x1, int y1);
-
- // get meander coords of a horizontal line at position y (index starting at 0)
-- int ImageData::getXline4(int y, int x0, int x1, double *xyvalues);
-+ int getXline4(int y, int x0, int x1, double *xyvalues);
-
- // same as getXline4 but with specified x ranges (start xr0, delta dxr)
-- int ImageData::getXline4(int y, int x0, int x1, double *xyvalues, double xr0, double dxr);
-+ int getXline4(int y, int x0, int x1, double *xyvalues, double xr0, double dxr);
-
- // get meander coords of a vertical line at position x (index starting at 0)
-- int ImageData::getYline4(int x, int y0, int y1, double *xyvalues);
-+ int getYline4(int x, int y0, int y1, double *xyvalues);
-
- // Return the image coords of the visible image area (bounding box)
-- void ImageData::getBbox(double *x0, double *x1, double *y0, double *y1);
-+ void getBbox(double *x0, double *x1, double *y0, double *y1);
-
- // get min and max values of an image area
- int getMinMax(double rx0, double ry0, int w, int h, double *minval, double *maxval);
-diff -Nur skycat-3.0.1/rtd/generic/ImageDisplay.h skycat-3.0.1.new/rtd/generic/ImageDisplay.h
---- skycat-3.0.1/rtd/generic/ImageDisplay.h 2006-01-12 16:39:29.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/ImageDisplay.h 2006-09-14 11:35:30.000000000 +0100
-@@ -78,7 +78,7 @@
- }
-
- // flush X output buffer
-- void ImageDisplay::flushX();
-+ void flushX();
-
- // other info
- int width() {return xImage_ ? xImage_->width : 0;}
-diff -Nur skycat-3.0.1/rtd/generic/RtdCamera.h skycat-3.0.1.new/rtd/generic/RtdCamera.h
---- skycat-3.0.1/rtd/generic/RtdCamera.h 2006-01-12 16:39:14.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/RtdCamera.h 2006-09-14 11:39:21.000000000 +0100
-@@ -48,7 +48,7 @@
- public:
-
- // constructor
-- RtdCamera::RtdCamera(
-+ RtdCamera(
- const char* name,
- Tcl_Interp*,
- int verbose,
-@@ -56,64 +56,64 @@
- char* image = "RtdCamera");
-
- // destructor
-- virtual RtdCamera::~RtdCamera();
-+ virtual ~RtdCamera();
-
- // static file handler, called by Tk file handler for realtime image events
-- static void RtdCamera::fileEventProc(ClientData, int mask);
-+ static void fileEventProc(ClientData, int mask);
-
- // start/stop/pause or continue accepting images
-- int RtdCamera::start(const char* cameraName);
-- int RtdCamera::stop();
-- int RtdCamera::pause();
-- int RtdCamera::cont();
-+ int start(const char* cameraName);
-+ int stop();
-+ int pause();
-+ int cont();
-
- // return camera name
-- char* RtdCamera::camera() {return camera_;}
-+ char* camera() {return camera_;}
-
- // Add timestamp in performance tool.
-- void RtdCamera::timeStamp(char *evDesc);
-+ void timeStamp(char *evDesc);
-
- // update global variables
-- int RtdCamera::updateGlobals();
-+ int updateGlobals();
-
- // check if camera is attached
-- int RtdCamera::attached();
-+ int attached();
-
- protected:
-
- // member called by fileEventProc for image events
-- int RtdCamera::fileEvent();
-+ int fileEvent();
-
- // cleanup image events in the socket queue
-- void RtdCamera::cleanup();
-+ void cleanup();
-
- // called to display new image from shared memory
- // (defined in a derived class)
-- virtual int RtdCamera::display(const rtdIMAGE_INFO&, const Mem& data) = 0;
-+ virtual int display(const rtdIMAGE_INFO&, const Mem& data) = 0;
-
- // set camera name
-- void RtdCamera::camera(const char *camera) {strcpy(camBuf_, camera);}
-+ void camera(const char *camera) {strcpy(camBuf_, camera);}
-
- // create/delete the Tcl file handler
-- void RtdCamera::fileHandler(int create);
-+ void fileHandler(int create);
-
- // disconnect from camera
-- void RtdCamera::disconnect();
-+ void disconnect();
-
- // Decrement the semaphore
-- void RtdCamera::semDecr();
-+ void semDecr();
-
- // check if rtdServer is alive
-- void RtdCamera::rtdServerCheck();
-+ void rtdServerCheck();
-
- // check status after image event failure
-- void RtdCamera::checkStat();
-+ void checkStat();
-
- // start accepting events from the camera
-- int RtdCamera::attach(const char* camera);
-+ int attach(const char* camera);
-
- // check image type
-- int RtdCamera::checkType(int type);
-+ int checkType(int type);
-
- Tcl_Interp* interp_; // Tcl interp (for file events, error handling)
- rtdIMAGE_EVT_HNDL* eventHndl_; // image event handle
-@@ -133,9 +133,9 @@
-
- // -- short cuts --
-
-- int RtdCamera::connected() {return connected_;}
-- void RtdCamera::connected(int set) {connected_ = set; }
-- void RtdCamera::attached(int set) {attached_ = set; }
-+ int connected() {return connected_;}
-+ void connected(int set) {connected_ = set; }
-+ void attached(int set) {attached_ = set; }
- };
-
- #endif /* _RtdCamera_h_ */
-diff -Nur skycat-3.0.1/rtd/generic/RtdImage.h skycat-3.0.1.new/rtd/generic/RtdImage.h
---- skycat-3.0.1/rtd/generic/RtdImage.h 2006-01-12 16:39:28.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/RtdImage.h 2006-09-14 11:47:08.000000000 +0100
-@@ -428,7 +428,7 @@
- static int rtd_set_cmap(ClientData, Tcl_Interp* interp, int argc, char** argv);
-
- // update idle tasks and performance test variables
-- void RtdImage::updateRequests();
-+ void updateRequests();
-
- // read-only access to configuration options
- static ImageColor* colors() {return colors_;}
-diff -Nur skycat-3.0.1/rtd/generic/RtdPerf.h skycat-3.0.1.new/rtd/generic/RtdPerf.h
---- skycat-3.0.1/rtd/generic/RtdPerf.h 2006-01-12 16:39:21.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/RtdPerf.h 2006-09-14 11:40:28.000000000 +0100
-@@ -23,42 +23,42 @@
-
- public:
- // Constructor
-- RtdPerf::RtdPerf(Tcl_Interp* interp);
-+ RtdPerf(Tcl_Interp* interp);
-
- // Destructor
-- RtdPerf::~RtdPerf();
-+ ~RtdPerf();
-
- // Add delta time to 'timevar'
-- void RtdPerf::timeInc(double *timevar);
-+ void timeInc(double *timevar);
-
- // Start a new cycle
-- void RtdPerf::newCycle();
-+ void newCycle();
-
- // End a cycle and set the Tcl global variables
-- void RtdPerf::endCycle();
-+ void endCycle();
-
- // Reset the time variables and Tcl global variables
-- void RtdPerf::reset();
-+ void reset();
-
- // Switch performance test on
-- void RtdPerf::on() {maybeOn_ = 1; on_ = 0;}
-- void RtdPerf::on(int set) {on_ = set;}
-+ void on() {maybeOn_ = 1; on_ = 0;}
-+ void on(int set) {on_ = set;}
-
- // Switch performance test on
-- void RtdPerf::off() {maybeOn_ = 0; on_ = 0;}
-+ void off() {maybeOn_ = 0; on_ = 0;}
-
- // Set verbose and debug flag
-- void RtdPerf::verbose(int set) {verbose_ = set;}
-- void RtdPerf::debug(int set) {debug_ = set;}
-+ void verbose(int set) {verbose_ = set;}
-+ void debug(int set) {debug_ = set;}
-
- // Set the instance name of the RtdImage (used for global Tcl variables)
-- void RtdPerf::name(char *nam) {strcpy(name_, nam);}
-+ void name(char *nam) {strcpy(name_, nam);}
-
- // -- short cuts --
-
-- void RtdPerf::GENtime() {timeInc(&GENtime_);}
-- void RtdPerf::TCLtime() {timeInc(&TCLtime_);}
-- void RtdPerf::Xtime() {timeInc(&Xtime_);}
-+ void GENtime() {timeInc(&GENtime_);}
-+ void TCLtime() {timeInc(&TCLtime_);}
-+ void Xtime() {timeInc(&Xtime_);}
-
- protected:
- RtdDebugLog *dbl_; // debug log object
-@@ -84,9 +84,9 @@
-
- // -- short cuts --
-
-- char* RtdPerf::name() {return(name_);}
-- int RtdPerf::isOn() {return on_;}
-- int RtdPerf::maybeOn() {return maybeOn_;}
-+ char* name() {return(name_);}
-+ int isOn() {return on_;}
-+ int maybeOn() {return maybeOn_;}
- };
-
- #endif /* _RtdPerf_h_ */
-diff -Nur skycat-3.0.1/rtd/generic/RtdUtils.h skycat-3.0.1.new/rtd/generic/RtdUtils.h
---- skycat-3.0.1/rtd/generic/RtdUtils.h 2006-01-12 16:39:16.000000000 +0000
-+++ skycat-3.0.1.new/rtd/generic/RtdUtils.h 2006-09-14 11:37:32.000000000 +0100
-@@ -28,11 +28,11 @@
- class RtdDebugLog {
- public:
-
-- RtdDebugLog::RtdDebugLog(char *nam, int debug);
-+ RtdDebugLog(char *nam, int debug);
-
-- void RtdDebugLog::log(const char *format, ...);
-- void RtdDebugLog::setlog(int set) {debug_ = set;}
-- int RtdDebugLog::setlog() {return debug_;}
-+ void log(const char *format, ...);
-+ void setlog(int set) {debug_ = set;}
-+ int setlog() {return debug_;}
-
- protected:
- char name_[100]; // name of application
-diff -Nur skycat-3.0.1/rtd/rtdevt/rtdCLNT.h skycat-3.0.1.new/rtd/rtdevt/rtdCLNT.h
---- skycat-3.0.1/rtd/rtdevt/rtdCLNT.h 2006-01-12 16:40:00.000000000 +0000
-+++ skycat-3.0.1.new/rtd/rtdevt/rtdCLNT.h 2006-09-14 11:51:56.000000000 +0100
-@@ -40,52 +40,52 @@
- ~rtdCLNT();
-
- // store/return the name of the requestor
-- char *rtdCLNT::ReqName() { return reqName_; }
-- void rtdCLNT::ReqName(char *name) { strncpy (reqNameBuf_, name, RTD_NAMELEN); }
-+ char *ReqName() { return reqName_; }
-+ void ReqName(char *name) { strncpy (reqNameBuf_, name, RTD_NAMELEN); }
-
- // store/return the name of the camera
-- char *rtdCLNT::CamName() { return camName_; }
-- void rtdCLNT::CamName(char *name) { strncpy (camNameBuf_, name, RTD_NAMELEN); }
-+ char *CamName() { return camName_; }
-+ void CamName(char *name) { strncpy (camNameBuf_, name, RTD_NAMELEN); }
-
- // store/return the name of the socket file descriptor
-- int rtdCLNT::Socket() { return socket_; }
-- void rtdCLNT::Socket(int socket) { socket_ = socket; }
-+ int Socket() { return socket_; }
-+ void Socket(int socket) { socket_ = socket; }
-
- // return the semaphore params set by the requestor
-- int rtdCLNT::semId() { return semId_; }
-+ int semId() { return semId_; }
-
- // return the number of semaphores
-- int rtdCLNT::shmNum() { return shmNum_; }
-+ int shmNum() { return shmNum_; }
-
- // set the values for semId and shmNum
-- void rtdCLNT::SetSemPar(int semId, int shmNum);
-+ void SetSemPar(int semId, int shmNum);
-
- // store/return the index
-- int rtdCLNT::Index() { return index_; }
-- void rtdCLNT::Index(int index) { index_ = index; }
-+ int Index() { return index_; }
-+ void Index(int index) { index_ = index; }
-
- // store/return the port number
-- int rtdCLNT::Port() { return port_; }
-- void rtdCLNT::Port(int port) { port_ = port; }
-+ int Port() { return port_; }
-+ void Port(int port) { port_ = port; }
-
- // store/return the type number
-- int rtdCLNT::Type() { return type_; }
-- void rtdCLNT::Type(int type) { type_ = type; }
-+ int Type() { return type_; }
-+ void Type(int type) { type_ = type; }
-
- // clear a buffer
-- void rtdCLNT::BufClear(char *name) { memset (name, '\0', RTD_NAMELEN); }
-+ void BufClear(char *name) { memset (name, '\0', RTD_NAMELEN); }
-
- // are we attched?
-- int rtdCLNT::Attached() { return (*reqName_ == '\0' || *camName_ == '\0'); }
-+ int Attached() { return (*reqName_ == '\0' || *camName_ == '\0'); }
-
-- void rtdCLNT::Attach(char* reqName, char *camName);
-- void rtdCLNT::Detach();
-+ void Attach(char* reqName, char *camName);
-+ void Detach();
-
-- int rtdCLNT::Forward(rtdPACKET *rtdPacket);
-- void rtdCLNT::Cleanup();
-- int rtdCLNT::Accept(int listenSocket);
-- int rtdCLNT::AttachedToCamera(char *camera);
-- char *rtdCLNT::TypeName();
-+ int Forward(rtdPACKET *rtdPacket);
-+ void Cleanup();
-+ int Accept(int listenSocket);
-+ int AttachedToCamera(char *camera);
-+ char *TypeName();
-
- private:
- char *reqName_; // name of requestor
-diff -Nur skycat-3.0.1/rtd/rtdevt/rtdLOG.h skycat-3.0.1.new/rtd/rtdevt/rtdLOG.h
---- skycat-3.0.1/rtd/rtdevt/rtdLOG.h 2006-01-12 16:39:54.000000000 +0000
-+++ skycat-3.0.1.new/rtd/rtdevt/rtdLOG.h 2006-09-14 11:51:06.000000000 +0100
-@@ -24,8 +24,8 @@
- rtdLOG(int);
- ~rtdLOG();
-
-- void rtdLOG::log(const char *format, ...);
-- int rtdLOG::Verbose() { return verbose_; }
-+ void log(const char *format, ...);
-+ int Verbose() { return verbose_; }
-
- private:
- int verbose_;
-diff -Nur skycat-3.0.1/rtd/rtdevt/rtdSERVER.h skycat-3.0.1.new/rtd/rtdevt/rtdSERVER.h
---- skycat-3.0.1/rtd/rtdevt/rtdSERVER.h 2006-01-12 16:39:57.000000000 +0000
-+++ skycat-3.0.1.new/rtd/rtdevt/rtdSERVER.h 2006-09-14 11:52:24.000000000 +0100
-@@ -39,15 +39,15 @@
- rtdSERVER(int, int, int);
- ~rtdSERVER();
-
-- int rtdSERVER::Loop();
-+ int Loop();
-
- protected:
-- rtdCLNT *rtdSERVER::GetCurrClient();
-- void rtdSERVER::ServImageCmd(rtdPACKET *rtdPacket);
-- void rtdSERVER::ServStatusCmd(int socket);
-- int rtdSERVER::IncrSem(rtdPACKET *rtdPacket, int increment);
-- rtdCLNT *rtdSERVER::Accept();
-- void rtdSERVER::DisconnectClient(rtdCLNT *client);
-+ rtdCLNT *GetCurrClient();
-+ void ServImageCmd(rtdPACKET *rtdPacket);
-+ void ServStatusCmd(int socket);
-+ int IncrSem(rtdPACKET *rtdPacket, int increment);
-+ rtdCLNT *Accept();
-+ void DisconnectClient(rtdCLNT *client);
-
- private:
- int socketFd_; // listen socket
diff --git a/sci-astronomy/skycat/files/skycat-3.0.1-m4.patch b/sci-astronomy/skycat/files/skycat-3.0.1-m4.patch
deleted file mode 100644
index 4a3bfc213..000000000
--- a/sci-astronomy/skycat/files/skycat-3.0.1-m4.patch
+++ /dev/null
@@ -1,141 +0,0 @@
---- skycat-3.0.1/tclconfig/tcl.m4 2006-02-01 22:10:36.000000000 +0000
-+++ skycat-3.0.1.new/tclconfig/tcl.m4 2006-09-14 11:23:20.000000000 +0100
-@@ -731,6 +731,50 @@
- ])
-
- #--------------------------------------------------------------------
-+# TEA_CONFIG_SYSTEM
-+#
-+# Determine what the system is (some things cannot be easily checked
-+# on a feature-driven basis, alas). This can usually be done via the
-+# "uname" command, but there are a few systems, like Next, where
-+# this doesn't work.
-+#
-+# Arguments:
-+# none
-+#
-+# Results:
-+# Defines the following var:
-+#
-+# system - System/platform/version identification code.
-+#
-+#--------------------------------------------------------------------
-+
-+AC_DEFUN(TEA_CONFIG_SYSTEM, [
-+ AC_MSG_CHECKING([system version])
-+ AC_CACHE_VAL(tcl_cv_sys_version,[
-+ if test -f /usr/lib/NextStep/software_version; then
-+ tcl_cv_sys_version=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version`
-+ else
-+ tcl_cv_sys_version=`uname -s`-`uname -r`
-+ if test "$?" -ne 0 ; then
-+ AC_MSG_WARN([can't find uname command])
-+ tcl_cv_sys_version=unknown
-+ else
-+ # Special check for weird MP-RAS system (uname returns weird
-+ # results, and the version is kept in special file).
-+
-+ if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-+ tcl_cv_sys_version=MP-RAS-`awk '{print $3}' /etc/.relid`
-+ fi
-+ if test "`uname -s`" = "AIX" ; then
-+ tcl_cv_sys_version=AIX-`uname -v`.`uname -r`
-+ fi
-+ fi
-+ fi])
-+ AC_MSG_RESULT($tcl_cv_sys_version)
-+ system=$tcl_cv_sys_version
-+])
-+
-+#--------------------------------------------------------------------
- # TEA_CONFIG_CFLAGS
- #
- # Try to determine the proper flags to pass to the compiler
-@@ -849,30 +893,7 @@
- # for the system. This can usually be done via the "uname" command, but
- # there are a few systems, like Next, where this doesn't work.
-
-- AC_MSG_CHECKING([system version (for dynamic loading)])
-- if test -f /usr/lib/NextStep/software_version; then
-- system=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version`
-- else
-- system=`uname -s`-`uname -r`
-- if test "$?" -ne 0 ; then
-- AC_MSG_RESULT([unknown (can't find uname command)])
-- system=unknown
-- else
-- # Special check for weird MP-RAS system (uname returns weird
-- # results, and the version is kept in special file).
--
-- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-- fi
-- if test "`uname -s`" = "AIX" ; then
-- system=AIX-`uname -v`.`uname -r`
-- fi
-- if test "${TEA_PLATFORM}" = "windows" ; then
-- system=windows
-- fi
-- AC_MSG_RESULT([$system])
-- fi
-- fi
-+ TEA_CONFIG_SYSTEM
-
- # Step 2: check for existence of -ldl library. This is needed because
- # Linux can use either -ldl or -ldld for dynamic loading.
-@@ -2318,25 +2339,8 @@
- AC_DEFUN(TEA_BLOCKING_STYLE, [
- AC_CHECK_HEADERS(sys/ioctl.h)
- AC_CHECK_HEADERS(sys/filio.h)
-+ TEA_CONFIG_SYSTEM
- AC_MSG_CHECKING([FIONBIO vs. O_NONBLOCK for nonblocking I/O])
-- if test -f /usr/lib/NextStep/software_version; then
-- system=NEXTSTEP-`awk '/3/,/3/' /usr/lib/NextStep/software_version`
-- else
-- system=`uname -s`-`uname -r`
-- if test "$?" -ne 0 ; then
-- system=unknown
-- else
-- # Special check for weird MP-RAS system (uname returns weird
-- # results, and the version is kept in special file).
--
-- if test -r /etc/.relid -a "X`uname -n`" = "X`uname -s`" ; then
-- system=MP-RAS-`awk '{print $3}' /etc/.relid'`
-- fi
-- if test "`uname -s`" = "AIX" ; then
-- system=AIX-`uname -v`.`uname -r`
-- fi
-- fi
-- fi
- case $system in
- # There used to be code here to use FIONBIO under AIX. However, it
- # was reported that FIONBIO doesn't work under AIX 3.2.5. Since
-@@ -3031,13 +3035,13 @@
- fi
- if test "${exec_prefix}" = "NONE" -a x"${prefix_default}" = x"yes" \
- -o x"${exec_prefix_default}" = x"yes" ; then
-- #if test x"${TCL_EXEC_PREFIX}" != x; then
-- #AC_MSG_NOTICE([--exec-prefix defaulting to TCL_EXEC_PREFIX ${TCL_EXEC_PREFIX}])
-- #exec_prefix=${TCL_EXEC_PREFIX}
-- #else
-+ if test x"${TCL_EXEC_PREFIX}" != x; then
-+ AC_MSG_NOTICE([--exec-prefix defaulting to TCL_EXEC_PREFIX ${TCL_EXEC_PREFIX}])
-+ exec_prefix=${TCL_EXEC_PREFIX}
-+ else
- AC_MSG_NOTICE([--exec-prefix defaulting to ${prefix}])
- exec_prefix=$prefix
-- #fi
-+ fi
- fi
- ])
-
-@@ -3817,7 +3821,8 @@
-
- # check in a few common install locations
- if test x"${ac_cv_c_$1config}" = x ; then
-- for i in `ls -d ${exec_prefix}/lib 2>/dev/null` \
-+ for i in `ls -d ${libdir} 2>/dev/null` \
-+ `ls -d ${exec_prefix}/lib 2>/dev/null` \
- `ls -d ${prefix}/lib 2>/dev/null` \
- `ls -d /usr/local/lib 2>/dev/null` \
- `ls -d /usr/contrib/lib 2>/dev/null` \
diff --git a/sci-astronomy/skycat/metadata.xml b/sci-astronomy/skycat/metadata.xml
deleted file mode 100644
index c78fd22c4..000000000
--- a/sci-astronomy/skycat/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
- SkyCat is a tool that combines visualization of images and access
- to catalogs and archive data for astronomy. It was developed at
- the European Southern Observatory.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/skycat/skycat-3.0.1.ebuild b/sci-astronomy/skycat/skycat-3.0.1.ebuild
deleted file mode 100644
index cb9b07636..000000000
--- a/sci-astronomy/skycat/skycat-3.0.1.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools
-
-DESCRIPTION="ESO astronomical image visualizer with catalog access."
-HOMEPAGE="http://archive.eso.org/skycat"
-SRC_URI="ftp://ftp.eso.org/pub/archive/${PN}/Sources/${P}.tar.gz"
-LICENSE="GPL-2"
-SLOT="0"
-
-KEYWORDS="~amd64 ~x86"
-IUSE="threads"
-
-DEPEND=">=dev-tcltk/tclx-2.4
- >=dev-tcltk/blt-2.4
- >=dev-tcltk/itcl-3.3
- >=dev-tcltk/iwidgets-4.0.1
- >=dev-tcltk/tkimg-1.3"
-
-
-src_unpack() {
- unpack ${A}
- # fix buggy tcl.m4 for bash3
- epatch "${FILESDIR}"/${P}-m4.patch
- # fix old style headers, set as error by new g++
- epatch "${FILESDIR}"/${P}-gcc41.patch
- cd "${S}"
- eautoreconf
-}
-
-src_compile() {
- econf \
- $(use_enable threads) \
- || die "econf failed"
- emake
- # a second time to make sure every dir passed
- emake || die "emake failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README CHANGES VERSION
- for d in tclutil astrotcl rtd cat skycat; do
- docinto ${d}
- dodoc README CHANGES VERSION
- done
-}
diff --git a/sci-astronomy/skymaker/ChangeLog b/sci-astronomy/skymaker/ChangeLog
deleted file mode 100644
index 189a83a4d..000000000
--- a/sci-astronomy/skymaker/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-astronomy/skymaker
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 20 Apr 2007; Sébastien Fabbro <bicatali@gentoo.org> ChangeLog:
- Initial import
-
diff --git a/sci-astronomy/skymaker/Manifest b/sci-astronomy/skymaker/Manifest
deleted file mode 100644
index b65121b1c..000000000
--- a/sci-astronomy/skymaker/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST skymaker-3.1.0.tar.gz 409089 RMD160 f40c969fc4de0f42240f381c003bc365f121f5cc SHA1 21c230ee2c2ebe0cf881be0efa1e701641e480fc SHA256 a61fbd31e3eb7bc1387018d6d1eb719503215d23027fa8919d8bbe4e805ab5e4
-EBUILD skymaker-3.1.0.ebuild 853 RMD160 4a7567b16a863f72dfa1a137b764a92c645babb7 SHA1 2ea54b5f22893595b82135bc9de5a6a69489a70e SHA256 fd3b8a674f8ad7d616f7f3231774ac1e40c3c2536f305025f5de8801ef6ac60f
-MD5 3286768c77d001b6421641487a19a11c skymaker-3.1.0.ebuild 853
-RMD160 4a7567b16a863f72dfa1a137b764a92c645babb7 skymaker-3.1.0.ebuild 853
-SHA256 fd3b8a674f8ad7d616f7f3231774ac1e40c3c2536f305025f5de8801ef6ac60f skymaker-3.1.0.ebuild 853
-MISC ChangeLog 207 RMD160 a006be2e6d1baa2998c22d252d2330b9aa568985 SHA1 a351147734a8997886dfa5ba68e265c70e532118 SHA256 d69f4c4f847cf80cf62b68fc87e2369401e334ce9f2a61d5edd313b5f3dab209
-MD5 6161069d620689b78e48003c0b9c4c6e ChangeLog 207
-RMD160 a006be2e6d1baa2998c22d252d2330b9aa568985 ChangeLog 207
-SHA256 d69f4c4f847cf80cf62b68fc87e2369401e334ce9f2a61d5edd313b5f3dab209 ChangeLog 207
-MISC metadata.xml 522 RMD160 82a2f56adf45447226214d63b733d5ee59a7a28f SHA1 f3fd9b95737eec4ac3bb5d7103b6237b21089d20 SHA256 d86351847a40cd61b3b7da6a9794b11a34de5192952dcb849d91cbc442b05646
-MD5 5db61e92c8a27c49f653fe23cb56f799 metadata.xml 522
-RMD160 82a2f56adf45447226214d63b733d5ee59a7a28f metadata.xml 522
-SHA256 d86351847a40cd61b3b7da6a9794b11a34de5192952dcb849d91cbc442b05646 metadata.xml 522
-MD5 9ec459fc30a365e9a7e260d91acee657 files/digest-skymaker-3.1.0 244
-RMD160 1fab2e4fe22400a77b4eceb045f6edf664a7721c files/digest-skymaker-3.1.0 244
-SHA256 f26f18b8747b47ea7c0095e1cddf7dfccf8309557d7375c8b477a50ea49c0ba6 files/digest-skymaker-3.1.0 244
diff --git a/sci-astronomy/skymaker/files/digest-skymaker-3.1.0 b/sci-astronomy/skymaker/files/digest-skymaker-3.1.0
deleted file mode 100644
index efd5f6275..000000000
--- a/sci-astronomy/skymaker/files/digest-skymaker-3.1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e0a491bcee5fa8d1440b1ba3d2eff90b skymaker-3.1.0.tar.gz 409089
-RMD160 f40c969fc4de0f42240f381c003bc365f121f5cc skymaker-3.1.0.tar.gz 409089
-SHA256 a61fbd31e3eb7bc1387018d6d1eb719503215d23027fa8919d8bbe4e805ab5e4 skymaker-3.1.0.tar.gz 409089
diff --git a/sci-astronomy/skymaker/metadata.xml b/sci-astronomy/skymaker/metadata.xml
deleted file mode 100644
index caa0b0596..000000000
--- a/sci-astronomy/skymaker/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-SkyMaker is a program that simulates astronomical images. It accepts
-object lists in ASCII generated by the Stuff program to produce
-realistic astronomical fields. There are various options for the user:
-build a realistic Point Spread Function, generate a list of stars and
-galaxies. Galaxies are modeled analytically.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/skymaker/skymaker-3.1.0.ebuild b/sci-astronomy/skymaker/skymaker-3.1.0.ebuild
deleted file mode 100644
index 5054b7e51..000000000
--- a/sci-astronomy/skymaker/skymaker-3.1.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Program that simulates astronomical images"
-HOMEPAGE="http://terapix.iap.fr/soft/skymaker"
-SRC_URI="ftp://ftp.iap.fr/pub/from_users/bertin/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="threads mpi"
-RESTRICT="test"
-
-DEPEND=">=sci-libs/fftw-3
- mpi? ( virtual/mpi )"
-
-# mpi stuff untested.
-src_compile() {
- use mpi || export MPICC="$(tc-getCC)"
- local myconf
- # --disable-threads is buggy
- use threads && myconf="--enable-threads"
- econf \
- $(use_enable mpi) \
- ${myconf} \
- || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc AUTHORS ChangeLog HISTORY README THANKS BUGS
-}
diff --git a/sci-astronomy/stiff/ChangeLog b/sci-astronomy/stiff/ChangeLog
deleted file mode 100644
index 27c6f18d8..000000000
--- a/sci-astronomy/stiff/ChangeLog
+++ /dev/null
@@ -1,15 +0,0 @@
-# ChangeLog for sci-astronomy/stiff
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org> stiff-1.10.ebuild:
- cleaning
-
- 29 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- Removed icc flag, too buggy.
-
-*stiff-1.10 (19 Sep 2006)
-
- 19 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> +stiff-1.10.ebuild:
- Initial import.
-
diff --git a/sci-astronomy/stiff/Manifest b/sci-astronomy/stiff/Manifest
deleted file mode 100644
index 801dc4b5c..000000000
--- a/sci-astronomy/stiff/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST stiff-1.10.tar.gz 5077852 RMD160 73645df6d9b1db5d30f2400336878e5b0ba4d253 SHA1 b55b61e1238f9fb3fc8a50b85ce2b5a8d0350954 SHA256 15433e1e78e25601fc40c106108ee5021aaa9be336f29a771f1747f497561eb1
-EBUILD stiff-1.10.ebuild 552 RMD160 c1149a3c2c7aaa8a7d1ce017c9007ab85979c748 SHA1 788f356f427daa4b2946485c065f4479a7851b11 SHA256 1d1b0e66e025415218aad92c209bb78d1342f2d7db7da8f2a3c005391e0d2865
-MD5 901f22834466968b8da95c2dfdda9eae stiff-1.10.ebuild 552
-RMD160 c1149a3c2c7aaa8a7d1ce017c9007ab85979c748 stiff-1.10.ebuild 552
-SHA256 1d1b0e66e025415218aad92c209bb78d1342f2d7db7da8f2a3c005391e0d2865 stiff-1.10.ebuild 552
-MISC ChangeLog 405 RMD160 ede7214b4ab6ba9093ed5b39b29eb875c369f55b SHA1 ba6e1a2eddd94700b6ca48c7b3ac94ca0ae3239a SHA256 d0a593cd903d28015bbc19b35dc0810cb9003845dc3730c6d9943899a3356e89
-MD5 95b5f348623a9ed5e3c6a0dfe875a5cb ChangeLog 405
-RMD160 ede7214b4ab6ba9093ed5b39b29eb875c369f55b ChangeLog 405
-SHA256 d0a593cd903d28015bbc19b35dc0810cb9003845dc3730c6d9943899a3356e89 ChangeLog 405
-MISC metadata.xml 348 RMD160 808677a0e79eb338980a9cbf5d68a086593a47b0 SHA1 88a4e495e68c143b0a4243d339ae06debf0c02bd SHA256 ca1f352ed481da49dbcaeb817d9579d12b35557c9abb4bc670b2986346200e94
-MD5 0250f276d0a4c03c43d5796076e6dd18 metadata.xml 348
-RMD160 808677a0e79eb338980a9cbf5d68a086593a47b0 metadata.xml 348
-SHA256 ca1f352ed481da49dbcaeb817d9579d12b35557c9abb4bc670b2986346200e94 metadata.xml 348
-MD5 259a6240531669965d93a82bfa2874ce files/digest-stiff-1.10 235
-RMD160 c9e6cdebda42fa042702a99b8d8333aeab50b5ca files/digest-stiff-1.10 235
-SHA256 b98dc3aa6f8217d895b5ff92a3474daa689f516e8ba7f0729e91a39ceca9c80c files/digest-stiff-1.10 235
diff --git a/sci-astronomy/stiff/files/digest-stiff-1.10 b/sci-astronomy/stiff/files/digest-stiff-1.10
deleted file mode 100644
index 58377397b..000000000
--- a/sci-astronomy/stiff/files/digest-stiff-1.10
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 78771a645c16b12433beff8de4f1a058 stiff-1.10.tar.gz 5077852
-RMD160 73645df6d9b1db5d30f2400336878e5b0ba4d253 stiff-1.10.tar.gz 5077852
-SHA256 15433e1e78e25601fc40c106108ee5021aaa9be336f29a771f1747f497561eb1 stiff-1.10.tar.gz 5077852
diff --git a/sci-astronomy/stiff/metadata.xml b/sci-astronomy/stiff/metadata.xml
deleted file mode 100644
index 39033f584..000000000
--- a/sci-astronomy/stiff/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-STIFF is a program that convert scientific FITS images to the
-more popular TIFF, in 8 (grayscale) or 24 (true colour: 3 times 8) bits per
-pixel.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/stiff/stiff-1.10.ebuild b/sci-astronomy/stiff/stiff-1.10.ebuild
deleted file mode 100644
index 54f46b5f5..000000000
--- a/sci-astronomy/stiff/stiff-1.10.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="Converts astronomical FITS images to the TIFF format for illustration purposes."
-HOMEPAGE="http://terapix.iap.fr/soft/stiff"
-SRC_URI="ftp://ftp.iap.fr/pub/from_users/bertin/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc"
-DEPEND=""
-
-src_install () {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc AUTHORS BUGS ChangeLog HISTORY README THANKS
- use doc && dodoc doc/*
-}
diff --git a/sci-astronomy/swarp/ChangeLog b/sci-astronomy/swarp/ChangeLog
deleted file mode 100644
index 51c60ad20..000000000
--- a/sci-astronomy/swarp/ChangeLog
+++ /dev/null
@@ -1,24 +0,0 @@
-# ChangeLog for sci-astronomy/swarp
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 01 Aug 2007; Sébastien Fabbro <bicatali@gentoo.org>
- -swarp-2.16.0-r1.ebuild, +swarp-2.16.4.ebuild:
- Version bump
-
- 26 Mar 2007; Sébastien Fabbro <bicatali@gentoo.org>
- swarp-2.16.0-r1.ebuild:
- cleaning
-
- 29 Dec 2006; Sebastien Fabbro <seb@ist.utl.pt>;
- Removed icc flag, too buggy.
-
-*swarp-2.16.0-r1 (15 Oct 2006)
-
- 15 Oct 2006; Sebastien Fabbro <seb@ist.utl.pt> swarp-2.16.0-r1.ebuild
- Removed flag filtering. Some cleaning.
-
-*swarp-2.16.0 (10 Sep 2006)
-
- 10 Sep 2006; Sebastien Fabbro <seb@ist.utl.pt> swarp-2.16.0.ebuild
- Initial import. Close bug #65685.
diff --git a/sci-astronomy/swarp/Manifest b/sci-astronomy/swarp/Manifest
deleted file mode 100644
index c6efd6863..000000000
--- a/sci-astronomy/swarp/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST swarp-2.16.4.tar.gz 3425784 RMD160 f9b88b2f6ba7694f55668ec7ea9a75c7e96bd467 SHA1 7195364e5f90f89e65b2c3519a7fe12d95ea8d57 SHA256 b58a2b842e2f8f10a851186c05fa63fbd69bc41cb65c2b537a74ec2274e5af1b
-EBUILD swarp-2.16.4.ebuild 900 RMD160 198d478e21ee9b5740ac5f9d5c5bab43c4be4174 SHA1 fbac9eeb1db9a2f7b51a50565026ea91921147ad SHA256 805209b501409a00f76f2d496f15feacd4c2f6ce92653f7e097e6d1c3fa7f36a
-MD5 72b9005ad31ac429eeb100aa1f46e27d swarp-2.16.4.ebuild 900
-RMD160 198d478e21ee9b5740ac5f9d5c5bab43c4be4174 swarp-2.16.4.ebuild 900
-SHA256 805209b501409a00f76f2d496f15feacd4c2f6ce92653f7e097e6d1c3fa7f36a swarp-2.16.4.ebuild 900
-MISC ChangeLog 699 RMD160 99936ff75b9a952aaee47c72800148e5c53b1859 SHA1 e98145f254fbd3c24b4cfd8f315093a2ac0d0080 SHA256 d2ab9a3686f167c50da61025afc685676ec95ea49cad562fa678d902f34e6144
-MD5 240f18b4a6e85c2eaa78b223a3f943bd ChangeLog 699
-RMD160 99936ff75b9a952aaee47c72800148e5c53b1859 ChangeLog 699
-SHA256 d2ab9a3686f167c50da61025afc685676ec95ea49cad562fa678d902f34e6144 ChangeLog 699
-MISC metadata.xml 302 RMD160 218ab232f609c110c3cf25aca0788e467cb9b99d SHA1 0900b05ec1dfdc906791c4fca976606078a5dfc9 SHA256 8de11d2c9a0b8f3c81195f010122b0ee86f4c5f9bac16db640bb326e42b5570b
-MD5 b30c308139c4ef0e02d82c2684652b96 metadata.xml 302
-RMD160 218ab232f609c110c3cf25aca0788e467cb9b99d metadata.xml 302
-SHA256 8de11d2c9a0b8f3c81195f010122b0ee86f4c5f9bac16db640bb326e42b5570b metadata.xml 302
-MD5 9f8f67602d64bc77498d053f8dd3b538 files/digest-swarp-2.16.4 241
-RMD160 84019f52e5c3b821b7cfbab50811346da25d0422 files/digest-swarp-2.16.4 241
-SHA256 3b3114ba025eae9a1d4a7f6548dd10b521579020ba42225a823229cd91d530e0 files/digest-swarp-2.16.4 241
diff --git a/sci-astronomy/swarp/files/digest-swarp-2.16.4 b/sci-astronomy/swarp/files/digest-swarp-2.16.4
deleted file mode 100644
index 764727e82..000000000
--- a/sci-astronomy/swarp/files/digest-swarp-2.16.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 248a91a06475ae0768483254c149104d swarp-2.16.4.tar.gz 3425784
-RMD160 f9b88b2f6ba7694f55668ec7ea9a75c7e96bd467 swarp-2.16.4.tar.gz 3425784
-SHA256 b58a2b842e2f8f10a851186c05fa63fbd69bc41cb65c2b537a74ec2274e5af1b swarp-2.16.4.tar.gz 3425784
diff --git a/sci-astronomy/swarp/metadata.xml b/sci-astronomy/swarp/metadata.xml
deleted file mode 100644
index 521a0577f..000000000
--- a/sci-astronomy/swarp/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-SWarp takes astronomical FITS images with a WCS-like projection,
-resample and coadd them together.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/swarp/swarp-2.16.4.ebuild b/sci-astronomy/swarp/swarp-2.16.4.ebuild
deleted file mode 100644
index 23852d094..000000000
--- a/sci-astronomy/swarp/swarp-2.16.4.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs
-
-DESCRIPTION="Resample and coadd astronomical FITS images"
-HOMEPAGE="http://terapix.iap.fr/soft/swarp"
-SRC_URI="ftp://ftp.iap.fr/pub/from_users/bertin/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc threads mpi"
-RDEPEND="mpi? ( virtual/mpi )"
-DEPEND="${RDEPEND}"
-
-# mpi stuff untested.
-src_compile() {
- use mpi || export MPICC="$(tc-getCC)"
- local myconf
- # --disable-threads is buggy
- use threads && myconf="--enable-threads"
- econf \
- $(use_enable mpi) \
- ${myconf} \
- || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc AUTHORS ChangeLog HISTORY README THANKS BUGS
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins doc/*
- fi
-}
diff --git a/sci-biology/amos/ChangeLog b/sci-biology/amos/ChangeLog
deleted file mode 100644
index 2ae77445a..000000000
--- a/sci-biology/amos/ChangeLog
+++ /dev/null
@@ -1,13 +0,0 @@
-# ChangeLog for sci-biology/amos
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> ChangeLog:
- Mass import from sunrise
-
- 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> amos-2.0.2.ebuild:
- fix die messages
-
- 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +amos-2.0.2.ebuild, +metadata.xml:
- new package (bug 175293)
-
diff --git a/sci-biology/amos/Manifest b/sci-biology/amos/Manifest
deleted file mode 100644
index 797538554..000000000
--- a/sci-biology/amos/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST amos-2.0.2.tar.gz 1822049 RMD160 6cf5f6afbc98494a9799fce678cab7f24a5c9d0d SHA1 de49a1f89b0a4ee994add23bdabe5841bcff6d68 SHA256 1bffa59ffe35a26f8328d49ac94df9f0f1be0c324954fd53f041c63353272416
-EBUILD amos-2.0.2.ebuild 605 RMD160 c2a5f45a542647d5460f5aa52eae46a9e44e7cc6 SHA1 bc2294caaacfba02e012d76ee1971fb5344ce4b9 SHA256 fa2320d424535504edd64a82be5bd9104ec981b1ec6e051de4c21d3f5ac8d8ae
-MD5 64b90f8c844d0a9d74ab402cfedb09fb amos-2.0.2.ebuild 605
-RMD160 c2a5f45a542647d5460f5aa52eae46a9e44e7cc6 amos-2.0.2.ebuild 605
-SHA256 fa2320d424535504edd64a82be5bd9104ec981b1ec6e051de4c21d3f5ac8d8ae amos-2.0.2.ebuild 605
-MISC ChangeLog 420 RMD160 21fed08e83092846b647b550c24b9ff5e0827b9a SHA1 0e1129d82c9b41196c5446f30950b99b07c08b91 SHA256 a8825ccc7fb112030924858a10106305ee797c008ef9751846264316f2479838
-MD5 ffa1f8cc6f2d4feb2368c70c1819f058 ChangeLog 420
-RMD160 21fed08e83092846b647b550c24b9ff5e0827b9a ChangeLog 420
-SHA256 a8825ccc7fb112030924858a10106305ee797c008ef9751846264316f2479838 ChangeLog 420
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 228b8e9fef24c934d9d6873b879b55f2 files/digest-amos-2.0.2 235
-RMD160 a525ec025623d938b6aac7a445b29b25c9312c39 files/digest-amos-2.0.2 235
-SHA256 c33383fe3ec9a19443247a6e33946b1aafbe6c8484ba1bd27443bb0db2076b97 files/digest-amos-2.0.2 235
diff --git a/sci-biology/amos/amos-2.0.2.ebuild b/sci-biology/amos/amos-2.0.2.ebuild
deleted file mode 100644
index 23584bbc0..000000000
--- a/sci-biology/amos/amos-2.0.2.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit qt3
-
-DESCRIPTION="A Modular, Open-Source whole genome assembler"
-HOMEPAGE="http://amos.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND="$(qt_min_version 3.3)"
-RDEPEND="${DEPEND}
- sci-biology/mummer"
-
-src_compile() {
- econf || die "econf failed"
- # TODO: fix parallel make. Notified upstream
- emake -j1 || die "emake failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "install failed"
-}
diff --git a/sci-biology/amos/files/digest-amos-2.0.2 b/sci-biology/amos/files/digest-amos-2.0.2
deleted file mode 100644
index 2584a1b6b..000000000
--- a/sci-biology/amos/files/digest-amos-2.0.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 ea4182c2647bbab1ee38e59e5383786b amos-2.0.2.tar.gz 1822049
-RMD160 6cf5f6afbc98494a9799fce678cab7f24a5c9d0d amos-2.0.2.tar.gz 1822049
-SHA256 1bffa59ffe35a26f8328d49ac94df9f0f1be0c324954fd53f041c63353272416 amos-2.0.2.tar.gz 1822049
diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/amos/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/blat/ChangeLog b/sci-biology/blat/ChangeLog
deleted file mode 100644
index 2b7ceafad..000000000
--- a/sci-biology/blat/ChangeLog
+++ /dev/null
@@ -1,17 +0,0 @@
-# ChangeLog for sci-biology/blat
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 30 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +blat-34.ebuild:
- version bump!
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +blat-33.ebuild:
- Mass import from sunrise
-
- 05 Oct 2006; Markus Ullmann <jokey@gentoo.org> blat-33.ebuild:
- Small QA
-
- 25 Sep 2006; Andrey Kislyuk (weaver) <weaver@horizon.ath.cx> +blat-33.ebuild,
- +metadata.xml:
- new ebuild: sci-biology/blat-33 (bug 135307)
-
diff --git a/sci-biology/blat/Manifest b/sci-biology/blat/Manifest
deleted file mode 100644
index 5d4c07ec1..000000000
--- a/sci-biology/blat/Manifest
+++ /dev/null
@@ -1,24 +0,0 @@
-DIST blatSrc33.zip 1308517 RMD160 76d7f8f713a5ece72c63eb8852662acf83e2e736 SHA1 a9606455549e2f153ab04321d08e59f60c039dd2 SHA256 4ca932721f529d815e64b51940c94d8136faec52c6b8bf8c3fcd3706337d9a29
-DIST blatSrc34.zip 2142975 RMD160 6c8226305c56ea56504103db6ef401841bc0c6f7 SHA1 4208451b5fa5f6cf30d15afb1df79edc850735db SHA256 b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629
-EBUILD blat-33.ebuild 812 RMD160 bcc1c8d50d708410dcc1e9bfd650523806209d6b SHA1 851fb369c0d328c3c1add9b94c66aae24fa66bfa SHA256 c80f630e4df9309dbfc599247a04128605a635cccec1c5ec2bf6b02d0f998b2e
-MD5 6ce5dcd42aa0c271b0e14f6f1d93cd9d blat-33.ebuild 812
-RMD160 bcc1c8d50d708410dcc1e9bfd650523806209d6b blat-33.ebuild 812
-SHA256 c80f630e4df9309dbfc599247a04128605a635cccec1c5ec2bf6b02d0f998b2e blat-33.ebuild 812
-EBUILD blat-34.ebuild 887 RMD160 acd8641037ab23c784c54bacf4a8e7213953040d SHA1 e152207366ca8608b75a3c5f921e786938f80576 SHA256 918f6fbc8a6ec60f2eee0c07c0581d0826b02795492f72145bbfab3b0815096e
-MD5 99214efbec958a7df16f4281f94d9e46 blat-34.ebuild 887
-RMD160 acd8641037ab23c784c54bacf4a8e7213953040d blat-34.ebuild 887
-SHA256 918f6fbc8a6ec60f2eee0c07c0581d0826b02795492f72145bbfab3b0815096e blat-34.ebuild 887
-MISC ChangeLog 526 RMD160 b9715fd25f0863a81b969d7624d67ca6dfc42ab6 SHA1 632cefe41a3dd212aa6debb7e87d93e2b2123417 SHA256 d562514892d95708dd06ee82f0150ffd124dd1540e423a94ad9bd0897867740a
-MD5 1f9db8bfc74d836232ee3be23bb3c6ea ChangeLog 526
-RMD160 b9715fd25f0863a81b969d7624d67ca6dfc42ab6 ChangeLog 526
-SHA256 d562514892d95708dd06ee82f0150ffd124dd1540e423a94ad9bd0897867740a ChangeLog 526
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 762700fd66583fb30a2036fddc991c09 files/digest-blat-33 223
-RMD160 2a3f5a14978a209ed44542f37026dea617d025f7 files/digest-blat-33 223
-SHA256 37fda0a57d5990b4467a5d0ff43a26e8b7e4a0a7dca3ccfe4d0138cd69618b32 files/digest-blat-33 223
-MD5 81ab8b9934a53205396930264fcf07a6 files/digest-blat-34 223
-RMD160 7ac40e4fb8e6fcc9860c4f946868e827bc6f291d files/digest-blat-34 223
-SHA256 86fd983cb6150976e0c6b5eccdce7d0f2c23a97ded547e12a69aa32250d58e33 files/digest-blat-34 223
diff --git a/sci-biology/blat/blat-33.ebuild b/sci-biology/blat/blat-33.ebuild
deleted file mode 100644
index 2c694aff1..000000000
--- a/sci-biology/blat/blat-33.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs
-
-DESCRIPTION="The BLAST-Like Alignment Tool, a fast genomic sequence aligner"
-LICENSE="blat"
-HOMEPAGE="http://www.cse.ucsc.edu/~kent/"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-SRC_URI="http://www.soe.ucsc.edu/~kent/src/${PN}Src${PV}.zip"
-S="${WORKDIR}/${PN}Src"
-
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
-src_compile() {
- MACHTYPE=$(tc-arch)
- if [[ $MACHTYPE == "x86" ]]; then MACHTYPE="i386"; fi
- sed -i 's/-Werror//; s/CFLAGS=//;' "${S}/inc/common.mk"
- mkdir -p "${S}/bin/${MACHTYPE}"
- emake MACHTYPE="${MACHTYPE}" HOME="${S}" || die "emake failed"
-}
-
-src_install() {
- MACHTYPE=$(tc-arch)
- if [[ $MACHTYPE == "x86" ]]; then MACHTYPE="i386"; fi
- dobin "${S}/bin/${MACHTYPE}/"*
-}
diff --git a/sci-biology/blat/blat-34.ebuild b/sci-biology/blat/blat-34.ebuild
deleted file mode 100644
index 665fdf9fe..000000000
--- a/sci-biology/blat/blat-34.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit toolchain-funcs
-
-DESCRIPTION="The BLAST-Like Alignment Tool, a fast genomic sequence aligner"
-LICENSE="blat"
-HOMEPAGE="http://www.cse.ucsc.edu/~kent/"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-SRC_URI="http://www.soe.ucsc.edu/~kent/src/${PN}Src${PV}.zip"
-S="${WORKDIR}/${PN}Src"
-
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
-src_compile() {
- MACHTYPE=$(tc-arch)
- if [[ $MACHTYPE == "x86" ]]; then MACHTYPE="i386"; fi
- sed -i 's/-Werror//; s/CFLAGS=//;' "${S}/inc/common.mk"
- sed -i 's/\(${STRIP} \)/#\1/' "${S}"/{*/makefile,utils/*/makefile,*/*.mk}
- mkdir -p "${S}/bin/${MACHTYPE}"
- emake MACHTYPE="${MACHTYPE}" HOME="${S}" || die "emake failed"
-}
-
-src_install() {
- MACHTYPE=$(tc-arch)
- if [[ $MACHTYPE == "x86" ]]; then MACHTYPE="i386"; fi
- dobin "${S}/bin/${MACHTYPE}/"*
-}
diff --git a/sci-biology/blat/files/digest-blat-33 b/sci-biology/blat/files/digest-blat-33
deleted file mode 100644
index c1fe634d4..000000000
--- a/sci-biology/blat/files/digest-blat-33
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5f9d3a4a88e57dfc435b5dd465209918 blatSrc33.zip 1308517
-RMD160 76d7f8f713a5ece72c63eb8852662acf83e2e736 blatSrc33.zip 1308517
-SHA256 4ca932721f529d815e64b51940c94d8136faec52c6b8bf8c3fcd3706337d9a29 blatSrc33.zip 1308517
diff --git a/sci-biology/blat/files/digest-blat-34 b/sci-biology/blat/files/digest-blat-34
deleted file mode 100644
index 18742d057..000000000
--- a/sci-biology/blat/files/digest-blat-34
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c8637145ea70acf1ced1a670d37d7b98 blatSrc34.zip 2142975
-RMD160 6c8226305c56ea56504103db6ef401841bc0c6f7 blatSrc34.zip 2142975
-SHA256 b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629 blatSrc34.zip 2142975
diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/blat/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/blossoc/ChangeLog b/sci-biology/blossoc/ChangeLog
deleted file mode 100644
index 00ebd7d0b..000000000
--- a/sci-biology/blossoc/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-biology/blossoc
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +blossoc-1.1.1.ebuild:
- Mass import from sunrise
-
- 15 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +blossoc-1.1.1.ebuild,
- +metadata.xml:
- new package (bug 161063)
-
diff --git a/sci-biology/blossoc/Manifest b/sci-biology/blossoc/Manifest
deleted file mode 100644
index 497e46519..000000000
--- a/sci-biology/blossoc/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST blossoc-1.1.1.tar.gz 615190 RMD160 7c867e69671354abc5affb80d5e879f8fd5c762a SHA1 f71b903b4ffc1dbe832cd19cf0c09da30222b285 SHA256 964ba436d55caa7bf64ba417d43ddd123589494648360074237df195c6fb2dd4
-EBUILD blossoc-1.1.1.ebuild 480 RMD160 b072f0dc8e79d87f2829b56f93cab3ed0026d0c5 SHA1 9e14db25306b54fbd08cac2c518baf32941cf1d4 SHA256 6615272b267a2b9a2ac519cd03e585659631b178d103674e4bd2f356b9dfafd0
-MD5 eafa3d0a2aba386a21b056f18e49502e blossoc-1.1.1.ebuild 480
-RMD160 b072f0dc8e79d87f2829b56f93cab3ed0026d0c5 blossoc-1.1.1.ebuild 480
-SHA256 6615272b267a2b9a2ac519cd03e585659631b178d103674e4bd2f356b9dfafd0 blossoc-1.1.1.ebuild 480
-MISC ChangeLog 347 RMD160 43d9906fdb776920242d4975222a4c7bcccfc8bf SHA1 a2249d6182411f7b7de8edf46d116d7394a723cb SHA256 a8da1493f4ce8884496710c596945fdf3510dc1f098a4ef53a87c96247c198d0
-MD5 101136b031c34531cc89fb4d28bf5d77 ChangeLog 347
-RMD160 43d9906fdb776920242d4975222a4c7bcccfc8bf ChangeLog 347
-SHA256 a8da1493f4ce8884496710c596945fdf3510dc1f098a4ef53a87c96247c198d0 ChangeLog 347
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 2eab4b45781017a0de6f327c6d137579 files/digest-blossoc-1.1.1 241
-RMD160 f21bd00d39a00d454f439b896733993d5753b09c files/digest-blossoc-1.1.1 241
-SHA256 b515a0a46908b185c870bd4fec981443534bcce5481d512ca6c61f1e1ea12882 files/digest-blossoc-1.1.1 241
diff --git a/sci-biology/blossoc/blossoc-1.1.1.ebuild b/sci-biology/blossoc/blossoc-1.1.1.ebuild
deleted file mode 100644
index 38c712866..000000000
--- a/sci-biology/blossoc/blossoc-1.1.1.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A linkage disequilibrium association mapping tool"
-HOMEPAGE="http://www.daimi.au.dk/~mailund/Blossoc/"
-SRC_URI="http://www.daimi.au.dk/~mailund/Blossoc/download/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND="sci-libs/gsl"
-RDEPEND="${DEPEND}"
-
-src_install() {
- emake install DESTDIR="${D}" || die "emake install failed"
-}
diff --git a/sci-biology/blossoc/files/digest-blossoc-1.1.1 b/sci-biology/blossoc/files/digest-blossoc-1.1.1
deleted file mode 100644
index 8b7a8a112..000000000
--- a/sci-biology/blossoc/files/digest-blossoc-1.1.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 285394ff3e4c07505266354d4a0887b7 blossoc-1.1.1.tar.gz 615190
-RMD160 7c867e69671354abc5affb80d5e879f8fd5c762a blossoc-1.1.1.tar.gz 615190
-SHA256 964ba436d55caa7bf64ba417d43ddd123589494648360074237df195c6fb2dd4 blossoc-1.1.1.tar.gz 615190
diff --git a/sci-biology/blossoc/metadata.xml b/sci-biology/blossoc/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/blossoc/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/clover/ChangeLog b/sci-biology/clover/ChangeLog
deleted file mode 100644
index f21e33a49..000000000
--- a/sci-biology/clover/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/clover
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +clover-2006.07.17.ebuild:
- Mass import from sunrise
-
- 15 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +clover-2006.07.17.ebuild,
- +metadata.xml:
- new package (bug 142269)
-
diff --git a/sci-biology/clover/Manifest b/sci-biology/clover/Manifest
deleted file mode 100644
index d0dd1e5f7..000000000
--- a/sci-biology/clover/Manifest
+++ /dev/null
@@ -1,17 +0,0 @@
-DIST clover-2006-07-17.tar.gz 15610 RMD160 e7f5c2b53afef2df292f9274b2a1ce2c1fbbc0c3 SHA1 f80b528ceb9833d0465b1196ae793c5364a87109 SHA256 e7b5b9fa8a341d49d9cf79a6d03ef0677a493f0c34a9a2f466a864575af91cb9
-DIST jaspar2005core 14913 RMD160 6fe43472cc1a2e0389ad9290801db56488773d3e SHA1 be8cdff62cf35f430c0c17f53564529b08000c9c SHA256 498a560c67411789106b50ccdfd9bc41f571d77c2fe9bfba7e95128c0a122fe4
-EBUILD clover-2006.07.17.ebuild 1059 RMD160 968519d9c6c17d29102ae9b6465acfe3812bcae7 SHA1 873e0f380eac7567ef3c2f9ee29fbc619a31fc4f SHA256 0ed8a75004280210ccd56dfb5c510bca400ece76cddbe3728ea3674f52387bd6
-MD5 1509c4396358a7c57ced969757f1eb1e clover-2006.07.17.ebuild 1059
-RMD160 968519d9c6c17d29102ae9b6465acfe3812bcae7 clover-2006.07.17.ebuild 1059
-SHA256 0ed8a75004280210ccd56dfb5c510bca400ece76cddbe3728ea3674f52387bd6 clover-2006.07.17.ebuild 1059
-MISC ChangeLog 356 RMD160 648c4b8a14af9917a83ef1bcbd8dff38ba42b957 SHA1 c9bde15410e08f200396143117e4ccd3becf7fe9 SHA256 41819363e8b5dcf8d67293fe33b7bd9c91f85acf983e1983b8b70f78a3d39bba
-MD5 5d9971961a5b761a9824671bde7ced3d ChangeLog 356
-RMD160 648c4b8a14af9917a83ef1bcbd8dff38ba42b957 ChangeLog 356
-SHA256 41819363e8b5dcf8d67293fe33b7bd9c91f85acf983e1983b8b70f78a3d39bba ChangeLog 356
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 2fd761a79ad477d120b354d1a5a9baab files/digest-clover-2006.07.17 470
-RMD160 19c7bb7d36860924f2b707673290c6dd8e2d7a3a files/digest-clover-2006.07.17 470
-SHA256 d95bafedeabe12831000becf898ee985b95ff83e269e3d5ee39506fe1287a0d4 files/digest-clover-2006.07.17 470
diff --git a/sci-biology/clover/clover-2006.07.17.ebuild b/sci-biology/clover/clover-2006.07.17.ebuild
deleted file mode 100644
index 4cf143b0f..000000000
--- a/sci-biology/clover/clover-2006.07.17.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator toolchain-funcs
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
-HOMEPAGE="http://zlab.bu.edu/clover/"
-SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core"
-
-LICENSE="as-is"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}-${MY_PV}"
-
-src_unpack() {
- unpack ${PN}-${MY_PV}.tar.gz
-}
-
-src_compile() {
- sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed"
- emake || die "emake failed"
-}
-
-src_install() {
- dobin clover
- dodir "/usr/share/${PN}"
- insinto "/usr/share/${PN}"
- doins ${DISTDIR}/jaspar2005core || die
-}
-
-pkg_postinst() {
- einfo "The motif library jaspar2005core has been installed in"
- einfo " /usr/share/clover/jaspar2005core"
- einfo "You can pass this library to clover for motif search, or use your own library."
-}
diff --git a/sci-biology/clover/files/digest-clover-2006.07.17 b/sci-biology/clover/files/digest-clover-2006.07.17
deleted file mode 100644
index c407197a6..000000000
--- a/sci-biology/clover/files/digest-clover-2006.07.17
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 d0911be5da7d75164cb2d67f5d3f280d clover-2006-07-17.tar.gz 15610
-RMD160 e7f5c2b53afef2df292f9274b2a1ce2c1fbbc0c3 clover-2006-07-17.tar.gz 15610
-SHA256 e7b5b9fa8a341d49d9cf79a6d03ef0677a493f0c34a9a2f466a864575af91cb9 clover-2006-07-17.tar.gz 15610
-MD5 ab02ff3b3b4e79239d9176de9bda5e96 jaspar2005core 14913
-RMD160 6fe43472cc1a2e0389ad9290801db56488773d3e jaspar2005core 14913
-SHA256 498a560c67411789106b50ccdfd9bc41f571d77c2fe9bfba7e95128c0a122fe4 jaspar2005core 14913
diff --git a/sci-biology/clover/metadata.xml b/sci-biology/clover/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/clover/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/cluster/ChangeLog b/sci-biology/cluster/ChangeLog
deleted file mode 100644
index acdb0cf3c..000000000
--- a/sci-biology/cluster/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-biology/cluster
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 09 Aug 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Initial import of cluster-1.36 thanks to Favero Francesco
-
diff --git a/sci-biology/cluster/Manifest b/sci-biology/cluster/Manifest
deleted file mode 100644
index 17e7ca9f3..000000000
--- a/sci-biology/cluster/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX cluster-1.36-helpmenu-fix.patch 1287 RMD160 825d60b78925cc1c1d914bb0cea1a9953080f0c5 SHA1 45c42fe412ad428359f773e99382546ab2cfc2f9 SHA256 a90c835dd2d4a8196bffa67737c5755a5c5bed1be62772a76fcf0229ffaf47d4
-MD5 65a6e7833e5a0a489c7b017464b7fedc files/cluster-1.36-helpmenu-fix.patch 1287
-RMD160 825d60b78925cc1c1d914bb0cea1a9953080f0c5 files/cluster-1.36-helpmenu-fix.patch 1287
-SHA256 a90c835dd2d4a8196bffa67737c5755a5c5bed1be62772a76fcf0229ffaf47d4 files/cluster-1.36-helpmenu-fix.patch 1287
-DIST cluster-1.36.tar.gz 971192 RMD160 72dea711c915074bca8d6186af285f8640bdfd43 SHA1 69bb0de8e5fb9d6bf5ab29b53d65b21ab97cc4ce SHA256 76f73740a2c8725e704780643cfac11875c957ba85254114946dccf3326caccf
-EBUILD cluster-1.36.ebuild 1552 RMD160 9fb48feb8d7075ca4bf5a99e4ecf6e5c72b1a08c SHA1 7de36808ea8504f6ae63b0e7b863237d9527a898 SHA256 1dc66ec426ff85419e4577936de52b43ca006b1c58e274e3b661340d41344ff0
-MD5 aa681faa82772afcd8bbf73130fcae46 cluster-1.36.ebuild 1552
-RMD160 9fb48feb8d7075ca4bf5a99e4ecf6e5c72b1a08c cluster-1.36.ebuild 1552
-SHA256 1dc66ec426ff85419e4577936de52b43ca006b1c58e274e3b661340d41344ff0 cluster-1.36.ebuild 1552
-MISC ChangeLog 240 RMD160 c5b167761fa7fd0cb47ddbe0794f1851e367900f SHA1 6ea851b7d41fa95bb7dda862f416f9f9ed68acf8 SHA256 598dcd0f0044117a1049091c32988913dc7597b91cbc9b5ed715bb4d6d6d1c3e
-MD5 e937b7d3a2c5647d0a573842b6c6d589 ChangeLog 240
-RMD160 c5b167761fa7fd0cb47ddbe0794f1851e367900f ChangeLog 240
-SHA256 598dcd0f0044117a1049091c32988913dc7597b91cbc9b5ed715bb4d6d6d1c3e ChangeLog 240
-MISC metadata.xml 380 RMD160 a1c3ba6e6674088b1f06f1d8554b0457d5a95154 SHA1 eaf44b343cd9b336365d6a5858e41cf62dadd39b SHA256 4893d94442ec3c749ddb0fef6e62257e98b435e1709d4e71fc0f6c4ceea52dc2
-MD5 95aa0e81b9a24708648671ec7f94d3a6 metadata.xml 380
-RMD160 a1c3ba6e6674088b1f06f1d8554b0457d5a95154 metadata.xml 380
-SHA256 4893d94442ec3c749ddb0fef6e62257e98b435e1709d4e71fc0f6c4ceea52dc2 metadata.xml 380
-MD5 16e58679fbea16fbaf0e00d97797b449 files/digest-cluster-1.36 238
-RMD160 2d7b7d05ffc8e775ce7ffc7ffd6dfcb8f824edc5 files/digest-cluster-1.36 238
-SHA256 d611e29bd0456213c139ed17e12d1faaf0912da5140f82b2daa0903eee4c241f files/digest-cluster-1.36 238
diff --git a/sci-biology/cluster/cluster-1.36.ebuild b/sci-biology/cluster/cluster-1.36.ebuild
deleted file mode 100644
index 5af64c16b..000000000
--- a/sci-biology/cluster/cluster-1.36.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-inherit autotools
-SRC_URI="${P}.tar.gz"
-
-DESCRIPTION="Clustering software for microarray analysis"
-HOMEPAGE="http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv"
-LICENSE=""
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="X"
-
-DEPEND="X? ( virtual/motif )"
-RDEPEND="X? ( x11-misc/xdg-utils app-text/xpdf )"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
- einfo "Please obtain ${P}.tar.gz from ${HOMEPAGE} and place it in ${DISTDIR}"
-}
-
-src_unpack() {
- unpack "${A}"
- cd "${S}"
- sed -i \
- -e 's:^docdir = $(prefix)/cluster/doc:docdir = @docdir@:' \
- -e 's:^htmldir = $(prefix)/cluster/html:htmldir = @htmldir@:' \
- -e 's:^imagedir = $(prefix)/cluster/html/images:imagedir = @htmldir@/images:' \
- -e 's:^fileformatdir = $(prefix)/cluster:fileformatdir = @docdir@:' \
- X11/Makefile.in || die "sed failed"
-
- epatch "${FILESDIR}/${P}-helpmenu-fix.patch" || die "failed to patch helpmenu"
-
-}
-
-src_compile() {
-
- econf $(use_with X x) \
- --docdir="/usr/share/doc/${P}" \
- --htmldir="/usr/share/doc/${P}/html" \
- || die "econf failed"
-
- emake || die "emake failed"
-}
-
-src_install() {
- cd ${S}
- emake DESTDIR="${D}" install || die "Install failed"
-
- dodoc README COPYING AUTHORS ChangeLog NEWS TODO || die "failed to install docs"
- insinto /usr/share/doc/${P}/examples
- doins example/example.c example/README || die "failed to install docs"
- insinto /usr/share/doc/${P}
- doins doc/cluster.pdf || die "failed to install docs"
-
-}
diff --git a/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch b/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch
deleted file mode 100644
index 69f3a963e..000000000
--- a/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch
+++ /dev/null
@@ -1,30 +0,0 @@
---- X11/gui.c 2007-05-05 00:21:30.000000000 -0500
-+++ X11/gui.c-new 2007-08-09 04:25:53.000000000 -0500
-@@ -1786,15 +1786,15 @@
- { int item_no = (int) client_data;
- switch (item_no)
- { case CMD_HELP_HTMLHELP:
-- { system("netscape "PREFIX"/cluster/html/index.html &");
-+ { system("xdg-open "PREFIX"/share/doc/cluster-1.36/html/index.html &");
- break;
- }
- case CMD_HELP_MANUAL:
-- { system("acroread "PREFIX"/cluster/doc/cluster3.pdf &");
-+ { system("xpdf "PREFIX"/share/doc/cluster-1.36/cluster3.pdf &");
- break;
- }
- case CMD_HELP_DOWNLOAD:
-- { system("netscape http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/manual/index.html &");
-+ { system("xdg-open http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/manual/index.html &");
- break;
- }
- case CMD_HELP_FILEFORMAT:
-@@ -1852,7 +1852,7 @@
- XtManageChild(widget);
- free(helptext);
- n = 0;
-- pixmap = XmGetPixmap(XtScreen(dialog),PREFIX"/cluster/format.xpm",0,0);
-+ pixmap = XmGetPixmap(XtScreen(dialog),PREFIX"/share/doc/cluster-1.36/format.xpm",0,0);
- XtSetArg(args[n], XmNx, 10); n++;
- XtSetArg(args[n], XmNy, 410); n++;
- XtSetArg(args[n],XmNlabelType, XmPIXMAP); n++;
diff --git a/sci-biology/cluster/files/digest-cluster-1.36 b/sci-biology/cluster/files/digest-cluster-1.36
deleted file mode 100644
index 4611127da..000000000
--- a/sci-biology/cluster/files/digest-cluster-1.36
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 9333963ab3217bb3b51de5c491078563 cluster-1.36.tar.gz 971192
-RMD160 72dea711c915074bca8d6186af285f8640bdfd43 cluster-1.36.tar.gz 971192
-SHA256 76f73740a2c8725e704780643cfac11875c957ba85254114946dccf3326caccf cluster-1.36.tar.gz 971192
diff --git a/sci-biology/cluster/metadata.xml b/sci-biology/cluster/metadata.xml
deleted file mode 100644
index 2971c5ba0..000000000
--- a/sci-biology/cluster/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer>
-<email>je_fro@gentoo.org</email>
-<name>Jeff Gardner</name>
-</maintainer>
-<longdescription lang="en">
-Cluster provides an interface to access methods of gene expression data
-analysis.
-</longdescription>
-</pkgmetadata>
-
diff --git a/sci-biology/generecon/ChangeLog b/sci-biology/generecon/ChangeLog
deleted file mode 100644
index ff5a98428..000000000
--- a/sci-biology/generecon/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/generecon
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*generecon-1.2.1 (19 Apr 2006)
-
- 19 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com>:
- +generecon-1.2.1.ebuild, +metadata.xml, +ChangeLog,
- Initial import. Thanks to Neil <nshephard@gmail.com>
- for the initial ebuild. Closes bug #128514.
diff --git a/sci-biology/generecon/Manifest b/sci-biology/generecon/Manifest
deleted file mode 100644
index 83fec8d58..000000000
--- a/sci-biology/generecon/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX generecon-docfiles.patch 435 RMD160 ce732399b02f42a0089ea82ea240098dfb8207c5 SHA1 4f6ed16b9ce8f118b99a47d9e36ffa304e42e8bb SHA256 37fbf94d6716a489e6a59f119cf617b9ff024e612dc96323d2297f9c09360175
-MD5 537dc4e80ebe82b913290cfc7a0f6144 files/generecon-docfiles.patch 435
-RMD160 ce732399b02f42a0089ea82ea240098dfb8207c5 files/generecon-docfiles.patch 435
-SHA256 37fbf94d6716a489e6a59f119cf617b9ff024e612dc96323d2297f9c09360175 files/generecon-docfiles.patch 435
-DIST generecon-1.2.1.tar.gz 238270 RMD160 f625ec81db88556a33e76f63c5c242b70e951f0f SHA1 a1562a21eab88d6ac1b2d2c046b87414ff703d4b SHA256 b35496ab6baf0bda45dc7a934385441cc92bfac39cb0a261a541ad8b258ba446
-EBUILD generecon-1.2.1-r1.ebuild 1015 RMD160 0108cae8648d7e7831f18194e07f6796ac018fbc SHA1 7a77fcab817a6a70f4f7ae08ce71e9224d48ffa4 SHA256 b4b07aaab53f7a16cb2a1cc1b5c5d76df7198c2d012a25fe35a62de17b5cfb5f
-MD5 c793459ba1d3a6a3ffc81dd783c9edb1 generecon-1.2.1-r1.ebuild 1015
-RMD160 0108cae8648d7e7831f18194e07f6796ac018fbc generecon-1.2.1-r1.ebuild 1015
-SHA256 b4b07aaab53f7a16cb2a1cc1b5c5d76df7198c2d012a25fe35a62de17b5cfb5f generecon-1.2.1-r1.ebuild 1015
-MISC ChangeLog 363 RMD160 19d0d4926d34d52c906e11fef60b3d7d713c0b4f SHA1 d3248b7ba9d5b2aa8af1c6c77802199041720c0e SHA256 9a3bb08c6357408656ecf892cbe5e25eb62f53211e8276237b383d7548755242
-MD5 29a1e620d057818eb5edbc12f4c1f9ac ChangeLog 363
-RMD160 19d0d4926d34d52c906e11fef60b3d7d713c0b4f ChangeLog 363
-SHA256 9a3bb08c6357408656ecf892cbe5e25eb62f53211e8276237b383d7548755242 ChangeLog 363
-MISC metadata.xml 261 RMD160 d7630eceb5ae049fa36c58ed3c9f6fe7780c15bf SHA1 6ded05d9eaded2a6b810b7f80dd2dc3270bbff8e SHA256 8bbae243cac9cf6fc1d24a0582390bd1184df161f4d7f87300874e6a7860b15c
-MD5 5cfd1e62f34b60928bc68a829d31d4eb metadata.xml 261
-RMD160 d7630eceb5ae049fa36c58ed3c9f6fe7780c15bf metadata.xml 261
-SHA256 8bbae243cac9cf6fc1d24a0582390bd1184df161f4d7f87300874e6a7860b15c metadata.xml 261
-MD5 290f19d04f4c5d01712c2acb82451690 files/digest-generecon-1.2.1-r1 247
-RMD160 b8e2df20a2475c5a5d2866b0f7dff927a1021b5c files/digest-generecon-1.2.1-r1 247
-SHA256 e444905c55f0025a00372c2456d27b2b7cedfe82e03b7fd54807f26646903eed files/digest-generecon-1.2.1-r1 247
diff --git a/sci-biology/generecon/files/digest-generecon-1.2.1-r1 b/sci-biology/generecon/files/digest-generecon-1.2.1-r1
deleted file mode 100644
index 03adaf567..000000000
--- a/sci-biology/generecon/files/digest-generecon-1.2.1-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 bda6f2a7c40ddbe5f694050a299ef6a4 generecon-1.2.1.tar.gz 238270
-RMD160 f625ec81db88556a33e76f63c5c242b70e951f0f generecon-1.2.1.tar.gz 238270
-SHA256 b35496ab6baf0bda45dc7a934385441cc92bfac39cb0a261a541ad8b258ba446 generecon-1.2.1.tar.gz 238270
diff --git a/sci-biology/generecon/files/generecon-docfiles.patch b/sci-biology/generecon/files/generecon-docfiles.patch
deleted file mode 100644
index 79d63e73f..000000000
--- a/sci-biology/generecon/files/generecon-docfiles.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Nuar generecon-1.2.1.orig/Makefile.am generecon-1.2.1/Makefile.am
---- generecon-1.2.1.orig/Makefile.am 2006-04-19 12:52:18.000000000 -0300
-+++ generecon-1.2.1/Makefile.am 2006-04-19 12:55:53.000000000 -0300
-@@ -31,7 +31,7 @@
- bin_PROGRAMS = generecon
-
-
--docdir = ${prefix}/share/generecon/doc
-+docdir = ${prefix}/share/doc/#PF#
- dist_doc_DATA =
- test_inputdir = ${prefix}/share/generecon/test-input
- dist_test_input_DATA =
diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild
deleted file mode 100644
index 7adfb5cf5..000000000
--- a/sci-biology/generecon/generecon-1.2.1-r1.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils
-
-DESCRIPTION="Generecon performs linkage disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain Monte Carlo methods."
-HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/"
-SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz"
-SLOT="0"
-
-# License of the package. This must match the name of file(s) in
-# /usr/portage/licenses/. For complex license combination see the developer
-# docs on gentoo.org for details.
-LICENSE="GPL-2"
-
-KEYWORDS="x86"
-
-DEPEND="dev-scheme/guile
- sci-libs/gsl"
-
-src_unpack() {
- unpack ${A}
- sed 's|#PF#|'${PF}'|g' ${FILESDIR}/${PN}-docfiles.patch > ${PN}-docfiles.patch
-
- epatch ${PN}-docfiles.patch
-
- cd ${S}
- pwd
- einfo "Regenerating autotools files..."
- aclocal || die "aclocal failed"
- automake || die "automake failed"
-}
-
-src_install() {
- make DESTDIR=${D} install || die "make install failed"
-}
diff --git a/sci-biology/generecon/metadata.xml b/sci-biology/generecon/metadata.xml
deleted file mode 100644
index 963198591..000000000
--- a/sci-biology/generecon/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci</herd>
- <maintainer>
- <email>lucas.chiesa@gmail.com</email>
- <name>Lucas Chiesa</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/glimmer/ChangeLog b/sci-biology/glimmer/ChangeLog
deleted file mode 100644
index 2fc95e1e1..000000000
--- a/sci-biology/glimmer/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-biology/glimmer
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +glimmer-3.02.ebuild:
- Mass import from sunrise
-
- 14 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +glimmer-3.02.ebuild,
- +metadata.xml:
- new package sci-biology/glimmer (bug 170895)
-
diff --git a/sci-biology/glimmer/Manifest b/sci-biology/glimmer/Manifest
deleted file mode 100644
index 1b08c4db9..000000000
--- a/sci-biology/glimmer/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST glimmer302.tar.gz 5637075 RMD160 bc29bb045f7a4179504cb3843741393f42e11ab8 SHA1 e2f27fdab82cd8978f1452bfcd4c0287c52b77b7 SHA256 a1e422ee56f495f9f99e1741ba2043f026fc8182afcc47cb20cfd2d989537221
-EBUILD glimmer-3.02.ebuild 839 RMD160 5f3881415516349d932ea51632b8ae19f5e3c0af SHA1 979d34e653b1139a6400f694161133634d40ec69 SHA256 00f660e15cfe8084b3b65e488e5041743194722b7786ca114f22ec368b6e11e5
-MD5 2431066d7e43a58b06fdaff0e2f9bd85 glimmer-3.02.ebuild 839
-RMD160 5f3881415516349d932ea51632b8ae19f5e3c0af glimmer-3.02.ebuild 839
-SHA256 00f660e15cfe8084b3b65e488e5041743194722b7786ca114f22ec368b6e11e5 glimmer-3.02.ebuild 839
-MISC ChangeLog 365 RMD160 07fd0d884f3aebb2fc0c13de4d3f0df1d391ca85 SHA1 14ae9ea74f773515a0109a3c223a685e2c488cd3 SHA256 88f2c93b45b8e227684111cd0c2780229cc20937826784e70156b3146749a161
-MD5 ae0cdbff2c11ed541c08f17a9d9b3b2a ChangeLog 365
-RMD160 07fd0d884f3aebb2fc0c13de4d3f0df1d391ca85 ChangeLog 365
-SHA256 88f2c93b45b8e227684111cd0c2780229cc20937826784e70156b3146749a161 ChangeLog 365
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 0598b7144226d863734ebb1b24afbf42 files/digest-glimmer-3.02 235
-RMD160 9847204829229587d689348ec41f339162f447c6 files/digest-glimmer-3.02 235
-SHA256 8f9193b635bdf44fde42e859c109f9b3d0edf3b5e1eba9ddea979671561ffedd files/digest-glimmer-3.02 235
diff --git a/sci-biology/glimmer/files/digest-glimmer-3.02 b/sci-biology/glimmer/files/digest-glimmer-3.02
deleted file mode 100644
index b724ad949..000000000
--- a/sci-biology/glimmer/files/digest-glimmer-3.02
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3e933b79c7d019eb48fa87b9fda1e1ee glimmer302.tar.gz 5637075
-RMD160 bc29bb045f7a4179504cb3843741393f42e11ab8 glimmer302.tar.gz 5637075
-SHA256 a1e422ee56f495f9f99e1741ba2043f026fc8182afcc47cb20cfd2d989537221 glimmer302.tar.gz 5637075
diff --git a/sci-biology/glimmer/glimmer-3.02.ebuild b/sci-biology/glimmer/glimmer-3.02.ebuild
deleted file mode 100644
index 2814ad994..000000000
--- a/sci-biology/glimmer/glimmer-3.02.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(delete_all_version_separators)
-
-DESCRIPTION="An HMM-based microbial gene finding system from TIGR"
-HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/"
-SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S=${WORKDIR}/${PN}${PV}
-
-src_compile() {
- sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \
- -e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths"
- cd src
- emake || die "emake failed"
-}
-
-src_install() {
- rm bin/test
- dobin bin/*
-
- dodir /usr/share/${PN}/scripts
- insinto /usr/share/${PN}/scripts
- doins scripts/*
-
- dodoc glim302notes.pdf
-}
diff --git a/sci-biology/glimmer/metadata.xml b/sci-biology/glimmer/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/glimmer/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog
deleted file mode 100644
index 918e4112f..000000000
--- a/sci-biology/glimmerhmm/ChangeLog
+++ /dev/null
@@ -1,16 +0,0 @@
-# ChangeLog for sci-biology/glimmerhmm
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +glimmerhmm-3.0.1.ebuild:
- Mass import from sunrise
-
- 15 Mar 2007; Christian Faulhammer <opfer@gentoo.org>
- glimmerhmm-3.0.1.ebuild:
- Orthographic sex-up
-
- 14 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +glimmerhmm-3.0.1.ebuild,
- +metadata.xml:
- new package sci-biology/glimmerhmm (bug 170964)
-
diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest
deleted file mode 100644
index e07e63b79..000000000
--- a/sci-biology/glimmerhmm/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST GlimmerHMM-3.0.1.tar.gz 45475952 RMD160 273cb74458e3f444cd9f8ca9f6618335aea5465f SHA1 6caf10a3fb79660e48d88560869dee0394961f1a SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4
-EBUILD glimmerhmm-3.0.1.ebuild 1256 RMD160 63bbac5df129a0867aa0ab6e025710c8683cdcf6 SHA1 c517e20085e5e716435c0d29bd1a3bae9228e2d1 SHA256 0a9df33ae04c5b275999041573f0935b32be4797da0b48211e88dbe277d7dfe5
-MD5 660bd1edbd45fe60d64f23417d319a80 glimmerhmm-3.0.1.ebuild 1256
-RMD160 63bbac5df129a0867aa0ab6e025710c8683cdcf6 glimmerhmm-3.0.1.ebuild 1256
-SHA256 0a9df33ae04c5b275999041573f0935b32be4797da0b48211e88dbe277d7dfe5 glimmerhmm-3.0.1.ebuild 1256
-MISC ChangeLog 486 RMD160 7d213d91b90390472c3afbf1a921ccbbfc6111c3 SHA1 7c1d8b78c09b3c2344874ca9923aab99cf0656d8 SHA256 87dcfa56bc3f3a8f104c7fcf893596d6ab677a982af26651336a7b8854fd31f1
-MD5 6f733ec00f6a44d4d0e8c47297f1b91a ChangeLog 486
-RMD160 7d213d91b90390472c3afbf1a921ccbbfc6111c3 ChangeLog 486
-SHA256 87dcfa56bc3f3a8f104c7fcf893596d6ab677a982af26651336a7b8854fd31f1 ChangeLog 486
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 6031057f170ba3e39d873476919294cf files/digest-glimmerhmm-3.0.1 256
-RMD160 30de1bc3c8be7819528bdbaea8be47a38d92b3a5 files/digest-glimmerhmm-3.0.1 256
-SHA256 a5ceb414b56313f97ef383cc3debda25408bcf877376fc456319a55e6f4f769e files/digest-glimmerhmm-3.0.1 256
diff --git a/sci-biology/glimmerhmm/files/digest-glimmerhmm-3.0.1 b/sci-biology/glimmerhmm/files/digest-glimmerhmm-3.0.1
deleted file mode 100644
index 9ab418485..000000000
--- a/sci-biology/glimmerhmm/files/digest-glimmerhmm-3.0.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e98e0bad04507b7f661e6b9876c3d1f6 GlimmerHMM-3.0.1.tar.gz 45475952
-RMD160 273cb74458e3f444cd9f8ca9f6618335aea5465f GlimmerHMM-3.0.1.tar.gz 45475952
-SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4 GlimmerHMM-3.0.1.tar.gz 45475952
diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
deleted file mode 100644
index 61f3a2740..000000000
--- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-MY_P=GlimmerHMM
-
-DESCRIPTION="An eukaryotic gene finding system from TIGR"
-HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
-SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S=${WORKDIR}/${MY_P}
-
-src_compile() {
- sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \
- -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed"
- sed -i 's/^CFLAGS[ ]*=.*//' */makefile
-
- cd sources
- emake || die "emake failed in sources"
- cd "${S}/train" || die "failed to cd"
- emake || die "emake failed in train"
-}
-
-src_install() {
- dobin sources/glimmerhmm train/trainGlimmerHMM
-
- dodir /usr/share/${PN}/{lib,models,training_utils}
- insinto /usr/share/${PN}/lib
- doins train/*.pm
- insinto /usr/share/${PN}/models
- doins -r trained_dir/*
- insinto /usr/share/${PN}/training_utils
- insopts -m755
- doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
-
- dodoc README.first train/readme.train
-}
diff --git a/sci-biology/glimmerhmm/metadata.xml b/sci-biology/glimmerhmm/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/glimmerhmm/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/gmap/ChangeLog b/sci-biology/gmap/ChangeLog
deleted file mode 100644
index 6e87b45e7..000000000
--- a/sci-biology/gmap/ChangeLog
+++ /dev/null
@@ -1,31 +0,0 @@
-# ChangeLog for sci-biology/gmap
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 11 Sep 2007; weaver <weaver@horizon.ath.cx> +gmap-2007.07.16.ebuild:
- version bump
-
- 30 May 2007; weaver <weaver@horizon.ath.cx> files/digest-gmap-2007.05.25,
- Manifest:
- upstream re-rolled tarball due to single bug, updating digests
-
- 29 May 2007; weaver <weaver@horizon.ath.cx> +gmap-2007.05.25.ebuild:
- version bump
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> ChangeLog:
- Mass import from sunrise
-
- 15 Apr 2007; Stefan Schweizer <genstef@gentoo.org> gmap-2006.12.18.ebuild:
- Remove RESTRICT=mirror, gmap license allows redistribution
-
- 09 Jan 2007; Markus Ullmann <jokey@gentoo.org> -gmap-2006.12.12.ebuild:
- Drop old
-
- 03 Jan 2007; Andrey Kislyuk (weaver) <weaver@horizon.ath.cx>
- +gmap-2006.12.18.ebuild:
- new version
-
- 12 Dec 2006; Andrey Kislyuk (weaver) <weaver@horizon.ath.cx>
- +gmap-20060421.ebuild, +metadata.xml:
- New ebuild, see Bug 135103
-
diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest
deleted file mode 100644
index bddd171b4..000000000
--- a/sci-biology/gmap/Manifest
+++ /dev/null
@@ -1,32 +0,0 @@
-DIST gmap-2006-12-18.tar.gz 829170 RMD160 fb247cc2c792ebb49742b33eecec2352b75c5123 SHA1 d9f2f7248176897c153f15bc00029a703fed6c5a SHA256 992f9f2058f83b4a84ffb84c9aaba75fc18d8ccdb0a0be66086f7f94f3ba5675
-DIST gmap-2007-05-25.tar.gz 953535 RMD160 203ae638492522e9acea435b1128386b19185ec1 SHA1 c167fc0d50816caae5e964464bcb60abd6087e8d SHA256 f1488314856819940ca39f4f7f106e2099e43d29d7e95e047cee7771357ce506
-DIST gmap-2007-07-16.tar.gz 964986 RMD160 ea375b06eb6d14c0c4d2b2d07374f81792b81ccd SHA1 6862cd16b156720f374a967be6b9dc9f71878bc5 SHA256 9634bde9f2a59630561eee957bd2fc90a96e20d1859ca00180a16279ad8e40f1
-EBUILD gmap-2006.12.18.ebuild 589 RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b SHA1 bda2d2d3b5d20803a141e8c0ab7da52f0a395839 SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54
-MD5 73bb62eca876fea0a2aa915e40999062 gmap-2006.12.18.ebuild 589
-RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b gmap-2006.12.18.ebuild 589
-SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54 gmap-2006.12.18.ebuild 589
-EBUILD gmap-2007.05.25.ebuild 589 RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b SHA1 bda2d2d3b5d20803a141e8c0ab7da52f0a395839 SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54
-MD5 73bb62eca876fea0a2aa915e40999062 gmap-2007.05.25.ebuild 589
-RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b gmap-2007.05.25.ebuild 589
-SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54 gmap-2007.05.25.ebuild 589
-EBUILD gmap-2007.07.16.ebuild 589 RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b SHA1 bda2d2d3b5d20803a141e8c0ab7da52f0a395839 SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54
-MD5 73bb62eca876fea0a2aa915e40999062 gmap-2007.07.16.ebuild 589
-RMD160 fb37510fd9269a5ae82e8e58c167cda5477bb94b gmap-2007.07.16.ebuild 589
-SHA256 ca6bb5ca0e0443c308fb7b54313856c94f835dd4c9d5a3f5a6b6d60e658add54 gmap-2007.07.16.ebuild 589
-MISC ChangeLog 1001 RMD160 5d1a59e49fe0f3048cdb9813d69678d81865c9cd SHA1 e9db8a958d3b2cfcfcf052884f14f6de154ad806 SHA256 922b20dc231bf2032749dd92237c7a0d644d5411d154770f89ff3e5271747b33
-MD5 de04957664b6882771a4a5a99a73f579 ChangeLog 1001
-RMD160 5d1a59e49fe0f3048cdb9813d69678d81865c9cd ChangeLog 1001
-SHA256 922b20dc231bf2032749dd92237c7a0d644d5411d154770f89ff3e5271747b33 ChangeLog 1001
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 3105018bf8979d9f1b80cbc08d4a265d files/digest-gmap-2006.12.18 247
-RMD160 96744012a8023c6774884a9765561c933f8c971d files/digest-gmap-2006.12.18 247
-SHA256 f29e1072fadc0b29ff68666daed3acfa0db6654a5f53d3f262689a5380f9ee70 files/digest-gmap-2006.12.18 247
-MD5 9c6340106627755634ebc7ddb50549b2 files/digest-gmap-2007.05.25 247
-RMD160 0ac0751508d05b974e91b1fb2c70bbf636b3ba91 files/digest-gmap-2007.05.25 247
-SHA256 57c982b127d72c168d5257afa30b8c36317204bf33a231b8c8b9f90928158b2b files/digest-gmap-2007.05.25 247
-MD5 9c557610d38ea3647108bc87a13cdced files/digest-gmap-2007.07.16 247
-RMD160 d7fc8a2a0e92e803fbc9b2373bc041ae2f4f7bff files/digest-gmap-2007.07.16 247
-SHA256 666f055a6e1e199d4dc5ea3472299d445c894c6b004ba0d63dfc4710b1153a4c files/digest-gmap-2007.07.16 247
diff --git a/sci-biology/gmap/files/digest-gmap-2006.12.18 b/sci-biology/gmap/files/digest-gmap-2006.12.18
deleted file mode 100644
index 664f48e6c..000000000
--- a/sci-biology/gmap/files/digest-gmap-2006.12.18
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 05630cc5956d483da218c93b743e004a gmap-2006-12-18.tar.gz 829170
-RMD160 fb247cc2c792ebb49742b33eecec2352b75c5123 gmap-2006-12-18.tar.gz 829170
-SHA256 992f9f2058f83b4a84ffb84c9aaba75fc18d8ccdb0a0be66086f7f94f3ba5675 gmap-2006-12-18.tar.gz 829170
diff --git a/sci-biology/gmap/files/digest-gmap-2007.05.25 b/sci-biology/gmap/files/digest-gmap-2007.05.25
deleted file mode 100644
index c5a785ac4..000000000
--- a/sci-biology/gmap/files/digest-gmap-2007.05.25
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 8a5eff72f44a1ea9db1b30a611718449 gmap-2007-05-25.tar.gz 953535
-RMD160 203ae638492522e9acea435b1128386b19185ec1 gmap-2007-05-25.tar.gz 953535
-SHA256 f1488314856819940ca39f4f7f106e2099e43d29d7e95e047cee7771357ce506 gmap-2007-05-25.tar.gz 953535
diff --git a/sci-biology/gmap/files/digest-gmap-2007.07.16 b/sci-biology/gmap/files/digest-gmap-2007.07.16
deleted file mode 100644
index 64febb433..000000000
--- a/sci-biology/gmap/files/digest-gmap-2007.07.16
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 b8d8637323d0c1d22a1d7def4d5e0afa gmap-2007-07-16.tar.gz 964986
-RMD160 ea375b06eb6d14c0c4d2b2d07374f81792b81ccd gmap-2007-07-16.tar.gz 964986
-SHA256 9634bde9f2a59630561eee957bd2fc90a96e20d1859ca00180a16279ad8e40f1 gmap-2007-07-16.tar.gz 964986
diff --git a/sci-biology/gmap/gmap-2006.12.18.ebuild b/sci-biology/gmap/gmap-2006.12.18.ebuild
deleted file mode 100644
index 2ee4ed983..000000000
--- a/sci-biology/gmap/gmap-2006.12.18.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://www.gene.com/share/gmap/src/gmap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_install() {
- emake install DESTDIR="${D}" || die "emake install failed"
- dodoc AUTHORS ChangeLog README
-}
diff --git a/sci-biology/gmap/gmap-2007.05.25.ebuild b/sci-biology/gmap/gmap-2007.05.25.ebuild
deleted file mode 100644
index 2ee4ed983..000000000
--- a/sci-biology/gmap/gmap-2007.05.25.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://www.gene.com/share/gmap/src/gmap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_install() {
- emake install DESTDIR="${D}" || die "emake install failed"
- dodoc AUTHORS ChangeLog README
-}
diff --git a/sci-biology/gmap/gmap-2007.07.16.ebuild b/sci-biology/gmap/gmap-2007.07.16.ebuild
deleted file mode 100644
index 2ee4ed983..000000000
--- a/sci-biology/gmap/gmap-2007.07.16.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
-HOMEPAGE="http://www.gene.com/share/gmap/"
-SRC_URI="http://www.gene.com/share/gmap/src/gmap-${MY_PV}.tar.gz"
-
-LICENSE="gmap"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/gmap-${MY_PV}"
-
-src_install() {
- emake install DESTDIR="${D}" || die "emake install failed"
- dodoc AUTHORS ChangeLog README
-}
diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/gmap/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/kalign/ChangeLog b/sci-biology/kalign/ChangeLog
deleted file mode 100644
index 67a193de8..000000000
--- a/sci-biology/kalign/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for sci-biology/kalign
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 29 Apr 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Added ~amd64.
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +kalign-2.03.ebuild:
- Mass import from sunrise
-
- 18 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +kalign-2.03.ebuild,
- +metadata.xml:
- New Ebuild for bug 175116
-
diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest
deleted file mode 100644
index 61a877ea1..000000000
--- a/sci-biology/kalign/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST kalign_2.03.orig.tar.gz 114022 RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd SHA1 c856d14b537a9139fc601e4de98870293a3aceb4 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0
-EBUILD kalign-2.03.ebuild 529 RMD160 02c6f1a4019b664be2263a9d03aec13c36c5e4aa SHA1 adfa98b67fe55fd56f3b767b39cb7c1d8e730355 SHA256 959b57056021948137f09c1404423e82e0e4ac30f274b942c2a110a20a22e6cf
-MD5 8ac9cdf7c3106dedd256682e711cf51f kalign-2.03.ebuild 529
-RMD160 02c6f1a4019b664be2263a9d03aec13c36c5e4aa kalign-2.03.ebuild 529
-SHA256 959b57056021948137f09c1404423e82e0e4ac30f274b942c2a110a20a22e6cf kalign-2.03.ebuild 529
-MISC ChangeLog 343 RMD160 bcaff9788619b5f05e8fac144b7f233204414e09 SHA1 7de36f7cfc492dc5c995ad52116ffdec31e74bfe SHA256 4972a48319334ca6f4a9042b70d6dacaf88c729e5f9636c4b20f7c2fadef59df
-MD5 4f0bdebfc8dc7dd844b3cd37146e5832 ChangeLog 343
-RMD160 bcaff9788619b5f05e8fac144b7f233204414e09 ChangeLog 343
-SHA256 4972a48319334ca6f4a9042b70d6dacaf88c729e5f9636c4b20f7c2fadef59df ChangeLog 343
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 d84ac9676b1c40aa1a4a60dc45844ce3 files/digest-kalign-2.03 250
-RMD160 411b63d9fbd2948186ab62bb8e46ca8d1d3da690 files/digest-kalign-2.03 250
-SHA256 3956c75c0783a86fe6059bbc8c71ef2f98a9a1e61966eee3f142bc08f69cbcfe files/digest-kalign-2.03 250
diff --git a/sci-biology/kalign/files/digest-kalign-2.03 b/sci-biology/kalign/files/digest-kalign-2.03
deleted file mode 100644
index a292b31e0..000000000
--- a/sci-biology/kalign/files/digest-kalign-2.03
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 7ad1642cbb1853528c40d0fe6f235fce kalign_2.03.orig.tar.gz 114022
-RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd kalign_2.03.orig.tar.gz 114022
-SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0 kalign_2.03.orig.tar.gz 114022
diff --git a/sci-biology/kalign/kalign-2.03.ebuild b/sci-biology/kalign/kalign-2.03.ebuild
deleted file mode 100644
index 79bea1903..000000000
--- a/sci-biology/kalign/kalign-2.03.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="Global and progressive multiple sequence alignment"
-HOMEPAGE="http://msa.cgb.ki.se/"
-SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}"
-
-src_unpack() {
- unpack ${A}
- sed -i 's/^CFLAGS.*= -O9/CFLAGS := ${CFLAGS} -O3/' ${S}/Makefile.in
-}
-
-src_install() {
- dobin kalign
- dodoc README
-}
diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/kalign/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog
deleted file mode 100644
index b0bc8509d..000000000
--- a/sci-biology/mummer/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-biology/mummer
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +mummer-3.19.ebuild:
- Mass import from sunrise
-
- 07 Mar 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +mummer-3.19.ebuild,
- +metadata.xml:
- New package, Bug 169793
-
diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest
deleted file mode 100644
index 094924a8a..000000000
--- a/sci-biology/mummer/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST MUMmer3.19.tar.gz 3141991 RMD160 54f3c692efb8bde7762c48186919754f2a8c178c SHA1 8906bab6bd43b307461de8b5f44122a115799533 SHA256 c590264e0def7de9259083de085f589ea39dc729d7f491790340b6b0abf3d6ab
-EBUILD mummer-3.19.ebuild 1462 RMD160 5f8b0b879579bbb191e127ff8502cf85ad24a1d6 SHA1 4fe7b3203592abf4fef23576225389304983102a SHA256 a4b07705f9363862d0a22418b3afbf90a1170653b3417f6217d69febf0ea70a5
-MD5 6e44430e8985e9ae0c49344af52c4d8d mummer-3.19.ebuild 1462
-RMD160 5f8b0b879579bbb191e127ff8502cf85ad24a1d6 mummer-3.19.ebuild 1462
-SHA256 a4b07705f9363862d0a22418b3afbf90a1170653b3417f6217d69febf0ea70a5 mummer-3.19.ebuild 1462
-MISC ChangeLog 341 RMD160 3af940375849fd821b9a26f495ec4dfe0d0e43d2 SHA1 343e404673256e84eaa87aab34f23c2fd0e10677 SHA256 fba592d098848186f7e54967015b44ca01753a11251c505add0bd83d361364eb
-MD5 583803d6dae0bbc9e2aa180ea0886f9a ChangeLog 341
-RMD160 3af940375849fd821b9a26f495ec4dfe0d0e43d2 ChangeLog 341
-SHA256 fba592d098848186f7e54967015b44ca01753a11251c505add0bd83d361364eb ChangeLog 341
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 aecc1fc23d65ba16769fc4b9cd7661f1 files/digest-mummer-3.19 235
-RMD160 579c3b585978eb4b23bdb2029556279eb7b7f1a7 files/digest-mummer-3.19 235
-SHA256 03a7db30ce80070d11adee5be808e1752dccd73cbffc5b73c4b131430b63ecc3 files/digest-mummer-3.19 235
diff --git a/sci-biology/mummer/files/digest-mummer-3.19 b/sci-biology/mummer/files/digest-mummer-3.19
deleted file mode 100644
index 52ef1125f..000000000
--- a/sci-biology/mummer/files/digest-mummer-3.19
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 7e0aa1c7da68c31b66fda9687171d9ff MUMmer3.19.tar.gz 3141991
-RMD160 54f3c692efb8bde7762c48186919754f2a8c178c MUMmer3.19.tar.gz 3141991
-SHA256 c590264e0def7de9259083de085f589ea39dc729d7f491790340b6b0abf3d6ab MUMmer3.19.tar.gz 3141991
diff --git a/sci-biology/mummer/metadata.xml b/sci-biology/mummer/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/mummer/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/mummer/mummer-3.19.ebuild b/sci-biology/mummer/mummer-3.19.ebuild
deleted file mode 100644
index a6b3e4c0c..000000000
--- a/sci-biology/mummer/mummer-3.19.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-MY_P=MUMmer${PV}
-DESCRIPTION="A rapid whole genome aligner"
-HOMEPAGE="http://mummer.sourceforge.net/"
-SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE="doc"
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S=${WORKDIR}/${MY_P}
-
-src_compile() {
- emake || die "emake failed"
-
- sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \
- -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \
- -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \
- -e 's|\(set bindir = \).*|\1/usr/bin|' \
- -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \
- -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \
- scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths"
- sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh
-}
-
-src_install() {
- dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \
- exact-tandems promer repeat-match show-aligns gaps mummer \
- show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/*
- newbin annotate mummer-annotate
-
- dodir /usr/share/${PN}/{lib,scripts}
- insinto /usr/share/${PN}/scripts
- doins scripts/{*.awk,*.csh,*.pl}
- insinto /usr/share/${PN}/lib
- doins scripts/Foundation.pm
-
- dodoc ACKNOWLEDGEMENTS ChangeLog README
- insinto /usr/share/doc/${PF}
- use doc && doins -r docs
-}
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog
deleted file mode 100644
index ad24df867..000000000
--- a/sci-biology/phrap/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/phrap
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +phrap-0.990329.ebuild:
- Mass import from sunrise
-
- 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +phrap-0.990329.ebuild,
- +metadata.xml:
- new package (bug 114094)
-
diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest
deleted file mode 100644
index b91e36473..000000000
--- a/sci-biology/phrap/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST phrap-distrib.tar.Z 366163 RMD160 f6d15059903868b907df225b9022b47957f4004a SHA1 69d9343d1d3bc7edcab2ebca222370fc9db7b9f7 SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc
-EBUILD phrap-0.990329.ebuild 864 RMD160 8b68c2d90e42141a40be209940becdaa49905a86 SHA1 2d932bf847b0caf4b29bdd070a3b45bf6667b59d SHA256 4a45b1a66fee1b89b5ef05ab43e64302092c84fba3860459a4224fd7ed92c51b
-MD5 4a1adcef5c69fe9cbf938427605a9a15 phrap-0.990329.ebuild 864
-RMD160 8b68c2d90e42141a40be209940becdaa49905a86 phrap-0.990329.ebuild 864
-SHA256 4a45b1a66fee1b89b5ef05ab43e64302092c84fba3860459a4224fd7ed92c51b phrap-0.990329.ebuild 864
-MISC ChangeLog 349 RMD160 df3f1863d3b262b9e132f56cca3ef29c32abec3a SHA1 fab185ba0db30f7e38348a51c320e18a07bfd3c5 SHA256 7f9bdafcf31c81b9645bbbe686713674401db183400afc50fe7645e362a0b0e6
-MD5 fe91acfe41cdb2b1bf6c9cda15f70023 ChangeLog 349
-RMD160 df3f1863d3b262b9e132f56cca3ef29c32abec3a ChangeLog 349
-SHA256 7f9bdafcf31c81b9645bbbe686713674401db183400afc50fe7645e362a0b0e6 ChangeLog 349
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 ff974aab20ef25dcbd88133eb69a3050 files/digest-phrap-0.990329 238
-RMD160 0b184a131052786397b0ba8d5d426290710b4b6b files/digest-phrap-0.990329 238
-SHA256 f6fe89aa7f79d89a054545bbd328c858d58f0df88fae08af5873f6c58480b699 files/digest-phrap-0.990329 238
diff --git a/sci-biology/phrap/files/digest-phrap-0.990329 b/sci-biology/phrap/files/digest-phrap-0.990329
deleted file mode 100644
index 20d49a807..000000000
--- a/sci-biology/phrap/files/digest-phrap-0.990329
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 35175595801cafd22ec348fb9dba0ce4 phrap-distrib.tar.Z 366163
-RMD160 f6d15059903868b907df225b9022b47957f4004a phrap-distrib.tar.Z 366163
-SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc phrap-distrib.tar.Z 366163
diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/phrap/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/phrap/phrap-0.990329.ebuild b/sci-biology/phrap/phrap-0.990329.ebuild
deleted file mode 100644
index 06cffa641..000000000
--- a/sci-biology/phrap/phrap-0.990329.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities"
-HOMEPAGE="http://www.phrap.org/"
-SRC_URI="phrap-distrib.tar.Z"
-
-LICENSE="phrap"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
- einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file"
- einfo '"distrib.tar.Z", then rename it to "phrap-distrib.tar.Z" and put it in'
- einfo "${DISTDIR}"
-}
-
-src_compile() {
- sed -i 's/CFLAGS=/#CFLAGS=/' makefile
- sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' phrapview
- emake || die "emake failed"
-}
-
-src_install() {
- dobin cluster cross_match loco phrap phrapview swat
- for i in {general,phrap,swat}.doc ; do
- newdoc ${i} ${i}.txt
- done
-}
diff --git a/sci-biology/proda/ChangeLog b/sci-biology/proda/ChangeLog
deleted file mode 100644
index 7ca249fa6..000000000
--- a/sci-biology/proda/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/proda
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +proda-1.0.ebuild:
- Mass import from sunrise
-
- 22 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +proda-1.0.ebuild, +metadata.xml:
- new package (bug 175524)
-
diff --git a/sci-biology/proda/Manifest b/sci-biology/proda/Manifest
deleted file mode 100644
index 2b789efde..000000000
--- a/sci-biology/proda/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST proda_1_0.tar.gz 38868 RMD160 b024496c935cebb74d50479d8cdeacce820358b1 SHA1 44303e1639b5c52278758d23d149ef1c434593a4 SHA256 439a93bf35e1a29ac1d5dde51e61f2cb174618596afaaaaa27d33a8ea1868a08
-EBUILD proda-1.0.ebuild 703 RMD160 46c755309e2925f3ebcc6ede718cd7b3d38c8469 SHA1 e9c55e5782f00660795cb8749c5373f4c1124bbd SHA256 8c454b35cafb73ca9c77662f922cff590498d39dafca97bbf2a4803e8d8c6524
-MD5 22682139eeb32de1232bd4f3d7456da0 proda-1.0.ebuild 703
-RMD160 46c755309e2925f3ebcc6ede718cd7b3d38c8469 proda-1.0.ebuild 703
-SHA256 8c454b35cafb73ca9c77662f922cff590498d39dafca97bbf2a4803e8d8c6524 proda-1.0.ebuild 703
-MISC ChangeLog 335 RMD160 913d0c1816d44d2b575580909498c0ab71a2d16c SHA1 0d4cb7d8379e35695dc9f76df4d6120bd1d7cbbc SHA256 c9a0ed83283201f9dc4e644e83668eb162f6be98cf08e9b55c3df4748355c85d
-MD5 5d191f83083ca000ac4f86904fa8cd4e ChangeLog 335
-RMD160 913d0c1816d44d2b575580909498c0ab71a2d16c ChangeLog 335
-SHA256 c9a0ed83283201f9dc4e644e83668eb162f6be98cf08e9b55c3df4748355c85d ChangeLog 335
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 d66b9a5871deb48c5aebd2e205314e86 files/digest-proda-1.0 226
-RMD160 b047cfb9499fabf3e38310ecb357c0139bf23a7a files/digest-proda-1.0 226
-SHA256 cdfd52e024fa633e85826e1b4d6dac73adcbe64588f1868059bfd1e0231818c8 files/digest-proda-1.0 226
diff --git a/sci-biology/proda/files/digest-proda-1.0 b/sci-biology/proda/files/digest-proda-1.0
deleted file mode 100644
index 6d0162087..000000000
--- a/sci-biology/proda/files/digest-proda-1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 99a0c04983d043f70e74b33ba6f38018 proda_1_0.tar.gz 38868
-RMD160 b024496c935cebb74d50479d8cdeacce820358b1 proda_1_0.tar.gz 38868
-SHA256 439a93bf35e1a29ac1d5dde51e61f2cb174618596afaaaaa27d33a8ea1868a08 proda_1_0.tar.gz 38868
diff --git a/sci-biology/proda/metadata.xml b/sci-biology/proda/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/proda/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/proda/proda-1.0.ebuild b/sci-biology/proda/proda-1.0.ebuild
deleted file mode 100644
index f38a59413..000000000
--- a/sci-biology/proda/proda-1.0.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '_')
-
-DESCRIPTION="Multiple alignment of protein sequences with repeated and shuffled elements"
-HOMEPAGE="http://proda.stanford.edu/"
-SRC_URI="http://proda.stanford.edu/proda_${MY_PV}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}"
-
-src_unpack() {
- unpack ${A}
- sed -i -e 's/^\(CXXFLAGS =\)/#\1/' \
- -e 's/#CXXFLAGS = \(-O3.*$(OTHERFLAGS) -funroll-loops\)/CXXFLAGS := ${CXXFLAGS} \1/' \
- "${S}/Makefile" || die "sed failed"
-}
-
-src_install() {
- dobin proda
-}
diff --git a/sci-biology/repeatmasker-libraries/ChangeLog b/sci-biology/repeatmasker-libraries/ChangeLog
deleted file mode 100644
index 6314ec8cb..000000000
--- a/sci-biology/repeatmasker-libraries/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/repeatmasker-libraries
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +repeatmasker-libraries-20061006.ebuild:
- Mass import from sunrise
-
- 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +repeatmasker-libraries-20061006.ebuild, +metadata.xml:
- new package (bug 114096)
-
diff --git a/sci-biology/repeatmasker-libraries/Manifest b/sci-biology/repeatmasker-libraries/Manifest
deleted file mode 100644
index f8676f39e..000000000
--- a/sci-biology/repeatmasker-libraries/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST repeatmaskerlibraries-20061006.tar.gz 5673785 RMD160 ea08ba4dfd49462b92ea9c6ffe64777ec67144d0 SHA1 5cb34e5c9a968f7e6b4a38c642856827469b857c SHA256 a3813d6e1960954f739ec3bb97cf56e9de4e238e420c28caf13c62cbbe247c4b
-EBUILD repeatmasker-libraries-20061006.ebuild 732 RMD160 dee404c6e4f28821b214c4d9900ff700681d9d02 SHA1 df3b98700d4a123cbdfdcdd458a7349ba2e33e26 SHA256 07726f54d11b2d51a951f4af72bce3cd0e9c4d2b64db1ad801640fa3772b4bee
-MD5 64047993e47f8d8eb4ee89de9b997cd0 repeatmasker-libraries-20061006.ebuild 732
-RMD160 dee404c6e4f28821b214c4d9900ff700681d9d02 repeatmasker-libraries-20061006.ebuild 732
-SHA256 07726f54d11b2d51a951f4af72bce3cd0e9c4d2b64db1ad801640fa3772b4bee repeatmasker-libraries-20061006.ebuild 732
-MISC ChangeLog 400 RMD160 a7b967a97f44050f6aecf9b38cdb5b92153840a9 SHA1 d0acfd86dca1bd200621949093c8487155fb2f62 SHA256 65b876add1d030a87ba29b8aba86bf7ced4e3aa90b100a6b79bf9241e2b9cbcf
-MD5 11aa8806469c87e2115220185dcba76b ChangeLog 400
-RMD160 a7b967a97f44050f6aecf9b38cdb5b92153840a9 ChangeLog 400
-SHA256 65b876add1d030a87ba29b8aba86bf7ced4e3aa90b100a6b79bf9241e2b9cbcf ChangeLog 400
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 aabf0ed56a1c19284d0f8b5cadd67bfa files/digest-repeatmasker-libraries-20061006 295
-RMD160 0178405e653cd56670f004d34bf223a67d0eb084 files/digest-repeatmasker-libraries-20061006 295
-SHA256 8b025628149fa976ca845cb917f7d425652e91c5e28935a37e11a0a5902a459c files/digest-repeatmasker-libraries-20061006 295
diff --git a/sci-biology/repeatmasker-libraries/files/digest-repeatmasker-libraries-20061006 b/sci-biology/repeatmasker-libraries/files/digest-repeatmasker-libraries-20061006
deleted file mode 100644
index 002d19366..000000000
--- a/sci-biology/repeatmasker-libraries/files/digest-repeatmasker-libraries-20061006
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 65ca44b2b3e784ec764d6b67d0d9f8a3 repeatmaskerlibraries-20061006.tar.gz 5673785
-RMD160 ea08ba4dfd49462b92ea9c6ffe64777ec67144d0 repeatmaskerlibraries-20061006.tar.gz 5673785
-SHA256 a3813d6e1960954f739ec3bb97cf56e9de4e238e420c28caf13c62cbbe247c4b repeatmaskerlibraries-20061006.tar.gz 5673785
diff --git a/sci-biology/repeatmasker-libraries/metadata.xml b/sci-biology/repeatmasker-libraries/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/repeatmasker-libraries/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20061006.ebuild b/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20061006.ebuild
deleted file mode 100644
index 6e1d528ce..000000000
--- a/sci-biology/repeatmasker-libraries/repeatmasker-libraries-20061006.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A special version of RepBase used by RepeatMasker"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="repeatmaskerlibraries-${PV}.tar.gz"
-
-LICENSE="as-is"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/Libraries"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
- einfo "Please register and download repeatmaskerlibraries-${PV}.tar.gz"
- einfo 'at http://www.girinst.org/'
- einfo '(select the "Repbase Update - RepeatMasker edition" link)'
- einfo 'and place it in '${DISTDIR}
-}
-
-src_install() {
- dodir /usr/share/repeatmasker/Libraries
- insinto /usr/share/repeatmasker/Libraries
- doins "${S}/"*
-}
diff --git a/sci-biology/repeatmasker/ChangeLog b/sci-biology/repeatmasker/ChangeLog
deleted file mode 100644
index 1c7082d50..000000000
--- a/sci-biology/repeatmasker/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/repeatmasker
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +repeatmasker-3.1.7.ebuild:
- Mass import from sunrise
-
- 20 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +repeatmasker-3.1.7.ebuild,
- +metadata.xml:
- new package (bug 114096)
-
diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
deleted file mode 100644
index 687ba7881..000000000
--- a/sci-biology/repeatmasker/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST RepeatMasker-open-3-1-7.tar.gz 8197799 RMD160 fda43f7e3ebe3dbf655b3071e93e6d47fdb8f1e3 SHA1 f36f09f2d4173437ac5eb090ea471b95fdfa832b SHA256 56c2866f7e489e5f606872ff97b509ae29e2b8816b8fd2ad0938edb7c6f788b8
-EBUILD repeatmasker-3.1.7.ebuild 1257 RMD160 dbc84c1ae3d41eaaf785199a665a12b0485053d4 SHA1 e3eb4f37c5683863702f11e18219e72fe3859bed SHA256 e8aca73edea668ad3a5f44ede1402fa65b6c1e5116572189c391a50850c6ae2c
-MD5 956cae84557800d6c95e712926c9e389 repeatmasker-3.1.7.ebuild 1257
-RMD160 dbc84c1ae3d41eaaf785199a665a12b0485053d4 repeatmasker-3.1.7.ebuild 1257
-SHA256 e8aca73edea668ad3a5f44ede1402fa65b6c1e5116572189c391a50850c6ae2c repeatmasker-3.1.7.ebuild 1257
-MISC ChangeLog 364 RMD160 e1877e532b0e93379bc19763efdf5b7358257cc9 SHA1 28c87840dc383e8b463c91888b644b2084398ea3 SHA256 179cbb0e848c489075df2c00191e97c5b9bf1cb55b564548a958c2ab2c063584
-MD5 bd8e377c8f80129cdb99bf8c782acf47 ChangeLog 364
-RMD160 e1877e532b0e93379bc19763efdf5b7358257cc9 ChangeLog 364
-SHA256 179cbb0e848c489075df2c00191e97c5b9bf1cb55b564548a958c2ab2c063584 ChangeLog 364
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 b9174bf38df7183f531cd70d0d632398 files/digest-repeatmasker-3.1.7 274
-RMD160 ec16d4108ead1718bd87b747216101b5f927cb17 files/digest-repeatmasker-3.1.7 274
-SHA256 fb42ae786b0974ae5f923335c6f985f9e766378d65ad42d76f50368a5c85c496 files/digest-repeatmasker-3.1.7 274
diff --git a/sci-biology/repeatmasker/files/digest-repeatmasker-3.1.7 b/sci-biology/repeatmasker/files/digest-repeatmasker-3.1.7
deleted file mode 100644
index cd87a7a2c..000000000
--- a/sci-biology/repeatmasker/files/digest-repeatmasker-3.1.7
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 2b3f5055eeae3cdf6c110d77ae10eafc RepeatMasker-open-3-1-7.tar.gz 8197799
-RMD160 fda43f7e3ebe3dbf655b3071e93e6d47fdb8f1e3 RepeatMasker-open-3-1-7.tar.gz 8197799
-SHA256 56c2866f7e489e5f606872ff97b509ae29e2b8816b8fd2ad0938edb7c6f788b8 RepeatMasker-open-3-1-7.tar.gz 8197799
diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/repeatmasker/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild b/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild
deleted file mode 100644
index d3ff1ce82..000000000
--- a/sci-biology/repeatmasker/repeatmasker-3.1.7.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator
-
-MY_PV=$(replace_all_version_separators '-')
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="sci-biology/phrap
- sci-biology/repeatmasker-libraries"
-
-S="${WORKDIR}/RepeatMasker"
-
-src_compile() {
- sed -i 's/system( "clear" );//' "${S}/configure"
- cat << END | "${S}/configure" || die "configure failed"
-
-/usr/bin
-/usr/share/${PN}
-1
-/usr/bin
-Y
-4
-END
- sed -i '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}/RepeatMaskerConfig.pm" || die "sed failed"
- sed -i 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker} || die "sed failed"
-}
-
-src_install() {
- dobin DateRepeats ProcessRepeats RepeatMasker
-
- dodir /usr/share/${PN}/lib
- insinto /usr/share/${PN}/lib
- doins "${S}"/*.pm
-
- insinto /usr/share/${PN}
- doins -r util Matrices
- keepdir /usr/share/${PN}/Libraries
-
- dodoc README INSTALL repeatmasker.help daterepeats.help
-}
diff --git a/sci-biology/sibsim4/ChangeLog b/sci-biology/sibsim4/ChangeLog
deleted file mode 100644
index 83fc95f4a..000000000
--- a/sci-biology/sibsim4/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for sci-biology/sibsim4
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 11 Sep 2007; weaver <weaver@horizon.ath.cx> +sibsim4-0.15.ebuild:
- version bump
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +sibsim4-0.14.ebuild:
- Mass import from sunrise
-
- 18 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +sibsim4-0.14.ebuild,
- +metadata.xml:
- new package (bug 175143)
-
diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest
deleted file mode 100644
index 40a2c2acb..000000000
--- a/sci-biology/sibsim4/Manifest
+++ /dev/null
@@ -1,24 +0,0 @@
-DIST SIBsim4-0.14.tar.gz 28956 RMD160 7e54d8973d750d80516c3cc2ce358230e3e8c4cf SHA1 ee4215b191b494074df4fe33088097e00e789393 SHA256 15c0493ddc21cb4086bcc2f72d6e7ac470256cd8d87605de359b59a853fb9596
-DIST SIBsim4-0.15.tar.gz 29090 RMD160 b9c56dd5bc2c69a2eefce7b15aa064d53c5ee8f0 SHA1 c0660daa7b95d986fc08dd6247014bbf3631cdd5 SHA256 d2b9c40d5935f1dc2bd66a65f80a907e0cfa7d317d304090ad32aa28b9f46a1b
-EBUILD sibsim4-0.14.ebuild 542 RMD160 272b1b10dbd5346f28615b60b3293084da1c968e SHA1 3ec8dd7a03def6ffca466ab4cb1c104694708834 SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b
-MD5 05729babe5c14d6cb34049e7d9de7696 sibsim4-0.14.ebuild 542
-RMD160 272b1b10dbd5346f28615b60b3293084da1c968e sibsim4-0.14.ebuild 542
-SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b sibsim4-0.14.ebuild 542
-EBUILD sibsim4-0.15.ebuild 542 RMD160 272b1b10dbd5346f28615b60b3293084da1c968e SHA1 3ec8dd7a03def6ffca466ab4cb1c104694708834 SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b
-MD5 05729babe5c14d6cb34049e7d9de7696 sibsim4-0.15.ebuild 542
-RMD160 272b1b10dbd5346f28615b60b3293084da1c968e sibsim4-0.15.ebuild 542
-SHA256 b2ce925f5529d246dc4bcd9744889e0f3bcc9be7ff4041c8b119694bfea8a07b sibsim4-0.15.ebuild 542
-MISC ChangeLog 429 RMD160 f0cac89ceeef990602eb76883532e934c0b19851 SHA1 a3a863686f2477f003b3a94aecc01b6b708750f1 SHA256 a99f78b1ab05bb2504312d4f3d0e90b1e64b5573768d8a7a65d2489aebca4ed6
-MD5 9b3d7b0ad4a40db64b76e95debe86ccd ChangeLog 429
-RMD160 f0cac89ceeef990602eb76883532e934c0b19851 ChangeLog 429
-SHA256 a99f78b1ab05bb2504312d4f3d0e90b1e64b5573768d8a7a65d2489aebca4ed6 ChangeLog 429
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 800b79024b4b386017dac71d76999d9f files/digest-sibsim4-0.14 235
-RMD160 7744aa21f20c76c2038c18d72045cffdd8467b45 files/digest-sibsim4-0.14 235
-SHA256 93ae4b12c5399bb383e443a5a1ef2c44bdac1ffcc2b014d819fef71c077ead08 files/digest-sibsim4-0.14 235
-MD5 f1db1ddcb44150a0fb642bb36126d9e5 files/digest-sibsim4-0.15 235
-RMD160 4e7b441cbfad17958cc84e458a21db33c9d48a7b files/digest-sibsim4-0.15 235
-SHA256 9489f844fbc15a156541911e2fe5f8145b6cbd303b4a430d95eca0031bc01c69 files/digest-sibsim4-0.15 235
diff --git a/sci-biology/sibsim4/files/digest-sibsim4-0.14 b/sci-biology/sibsim4/files/digest-sibsim4-0.14
deleted file mode 100644
index a431daadd..000000000
--- a/sci-biology/sibsim4/files/digest-sibsim4-0.14
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 b63af91d9cacf7d4f557d72119f934e5 SIBsim4-0.14.tar.gz 28956
-RMD160 7e54d8973d750d80516c3cc2ce358230e3e8c4cf SIBsim4-0.14.tar.gz 28956
-SHA256 15c0493ddc21cb4086bcc2f72d6e7ac470256cd8d87605de359b59a853fb9596 SIBsim4-0.14.tar.gz 28956
diff --git a/sci-biology/sibsim4/files/digest-sibsim4-0.15 b/sci-biology/sibsim4/files/digest-sibsim4-0.15
deleted file mode 100644
index 02db39a0a..000000000
--- a/sci-biology/sibsim4/files/digest-sibsim4-0.15
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 4cef55d0a357c047989e003872d5e142 SIBsim4-0.15.tar.gz 29090
-RMD160 b9c56dd5bc2c69a2eefce7b15aa064d53c5ee8f0 SIBsim4-0.15.tar.gz 29090
-SHA256 d2b9c40d5935f1dc2bd66a65f80a907e0cfa7d317d304090ad32aa28b9f46a1b SIBsim4-0.15.tar.gz 29090
diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/sibsim4/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/sibsim4/sibsim4-0.14.ebuild b/sci-biology/sibsim4/sibsim4-0.14.ebuild
deleted file mode 100644
index 64ada6178..000000000
--- a/sci-biology/sibsim4/sibsim4-0.14.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner"
-HOMEPAGE="http://sibsim4.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/SIBsim4-${PV}"
-
-src_unpack() {
- unpack ${A}
- sed -i 's/CFLAGS = \(.*\)/CFLAGS := \1 ${CFLAGS}/' ${S}/Makefile
-}
-
-src_install() {
- dobin SIBsim4
- doman SIBsim4.1
-}
diff --git a/sci-biology/sibsim4/sibsim4-0.15.ebuild b/sci-biology/sibsim4/sibsim4-0.15.ebuild
deleted file mode 100644
index 64ada6178..000000000
--- a/sci-biology/sibsim4/sibsim4-0.15.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner"
-HOMEPAGE="http://sibsim4.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/SIBsim4-${PV}"
-
-src_unpack() {
- unpack ${A}
- sed -i 's/CFLAGS = \(.*\)/CFLAGS := \1 ${CFLAGS}/' ${S}/Makefile
-}
-
-src_install() {
- dobin SIBsim4
- doman SIBsim4.1
-}
diff --git a/sci-biology/tgi-tools/ChangeLog b/sci-biology/tgi-tools/ChangeLog
deleted file mode 100644
index 9c5619c04..000000000
--- a/sci-biology/tgi-tools/ChangeLog
+++ /dev/null
@@ -1,20 +0,0 @@
-# ChangeLog for sci-biology/tgi-tools
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +tgi-tools-0.1.ebuild:
- Mass import from sunrise
-
- 15 Apr 2007; Stefan Schweizer <genstef@gentoo.org> tgi-tools-0.1.ebuild:
- Remove RESTRICT=mirror, Artistic license allows redistribution
-
- 14 Dec 2006; Markus Ullmann <jokey@gentoo.org> tgi-tools-0.1.ebuild:
- Whiteys
-
- 12 Dec 2006; Jakub Moc <jakub@gentoo.org> tgi-tools-0.1.ebuild:
- QA: quoting, formatting, nomirror -> mirror etc.
-
- 12 Dec 2006; Andrey Kislyuk (weaver) <weaver@horizon.ath.cx>
- +tgi-tools-0.1.ebuild, +metadata.xml:
- New ebuild, Bug 157827
-
diff --git a/sci-biology/tgi-tools/Manifest b/sci-biology/tgi-tools/Manifest
deleted file mode 100644
index 59293b72c..000000000
--- a/sci-biology/tgi-tools/Manifest
+++ /dev/null
@@ -1,26 +0,0 @@
-DIST cdbfasta.tar.gz 23470 RMD160 d587deaac94eced97728b0596022ea5e6a1bc75e SHA1 c7455ad2ac92cd1ee1293f0100fd871d71e4d630 SHA256 6862061d923f49579568e62be06bf434e79dbb56dfafe573353b4eb7d8ab9c9c
-DIST mdust.tar.gz 7526 RMD160 c04a6ba5a56724bfee70b8fe31f0bf4132b74885 SHA1 8885f206d61a76c6623c4115af02793bb52911c4 SHA256 9722806920fc6772dc92f99e7a59554c5f7c35b596dca0df9ed03ff2e5c6440d
-DIST nrcl.tar.gz 13151 RMD160 65f2e829fcf2da0134873eaa13098995b4472e15 SHA1 a9bf20a6f0f10201a03fb51644fa64e2519abd84 SHA256 3402a3efb38e3c7320831ca07e228374bbbba34d5b8a161446a7fc0bf4397808
-DIST psx.tar.gz 7797 RMD160 2b6de75126f19cbb60e1ed0b9988a935ad021a45 SHA1 3e0ac61f9ef2e546ff571bfc269e904138b445b9 SHA256 6759f1001be93fcfca9cebd0c764088c4942f2d7feee100d10cf2fbb39e4cd5a
-DIST pvmsx.tar.gz 10963 RMD160 1d14cb6e25a533f8a9879b04c5eb9e04532874e5 SHA1 562ea8628e47739ec7b98c622c894fe45e210c98 SHA256 c403534a0d13c2457a50c8ff5e9aeb5979d91a56307478b6420b5caf40e62230
-DIST sclust.tar.gz 14370 RMD160 1334a6a555c6ed3c8ad03ed697887bba76e8441e SHA1 19afe2272cb8b01e631313d57c38cd7fc575fc3c SHA256 4550350993a56d4e5e7163247965d4af91c32cc40ff7e0eeff3a0c6e04fd8ef4
-DIST seqclean.tar.gz 181383 RMD160 d3faae9e342e95dcbd66d39d80eb7e53f0527275 SHA1 8b3871cc0d70d71ff1bc7bfedc3638ff60e4c889 SHA256 4175b6ca7d93a7ea39e6dfb513500205c29a61b393a96bb2a7861a5540fd0d6d
-DIST tclust.tar.gz 8864 RMD160 e77a8ce86fa779bbce7c46efbce2245ec7735681 SHA1 35793ddc161c31ce0827073e993f4f6456dbbd35 SHA256 d4f9714f56f77c0e31f0ec9cd9da374899184f40fd688b06292e40412fbb7445
-DIST tgi_cpp_library.tar.gz 58212 RMD160 a85d0e0232a3956f93e521a73075d81d5ecfaaf3 SHA1 1039291f5f0ca617d025bcfacf4f271a3a225001 SHA256 555a81a63233d725868f6179cf3f5d74cceaa040058e2e4ded20f95487c89875
-DIST trimpoly.tar.gz 12562 RMD160 7345812dbbcea3d7fd2018ba1b04254863d171a4 SHA1 3558e9663cba6e6c179ca6f9a019f95d7aa1d4db SHA256 aa8f4a47d45ee534a15edf8e325f341a72d0ce0fa659ccfd8591c15bef44da4f
-DIST zmsort.tar.gz 5537 RMD160 cf6599dbd417f5ea50ec41db7909a2415ac28e68 SHA1 27a88033d99da8671fcae598f21e5b8cb7089e40 SHA256 32c5b72e22ae0fbd1784174dcff74e1a40817e29e98b2a0a32a21d83ace6b7fd
-EBUILD tgi-tools-0.1.ebuild 1556 RMD160 3a3782fd845e309a5a5cef84a870d7529581f684 SHA1 1fb231c11bf653fd7645380cb0c4fbbeb2478f0a SHA256 d5548b8ea3e0600a731e8bf9b186dd4027bcc7422b0960a17e072041e817d15e
-MD5 8c76fb96266f761e7ce56e28e236bfd3 tgi-tools-0.1.ebuild 1556
-RMD160 3a3782fd845e309a5a5cef84a870d7529581f684 tgi-tools-0.1.ebuild 1556
-SHA256 d5548b8ea3e0600a731e8bf9b186dd4027bcc7422b0960a17e072041e817d15e tgi-tools-0.1.ebuild 1556
-MISC ChangeLog 697 RMD160 d873f6a3192e71e8499646192ef725f58987ba96 SHA1 5f916419a43396c3ecd92b93f1ec732ca4f65999 SHA256 2111f501e89d7be9aa417de1aa13d2163740c3b7284d93c07db3924385e5ed57
-MD5 427621e2286227ccc8a41d25fb35aedd ChangeLog 697
-RMD160 d873f6a3192e71e8499646192ef725f58987ba96 ChangeLog 697
-SHA256 2111f501e89d7be9aa417de1aa13d2163740c3b7284d93c07db3924385e5ed57 ChangeLog 697
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 b74c49cd884b0fc9e4063bbf4f668097 files/digest-tgi-tools-0.1 2402
-RMD160 64d7dc05d77a3600c7db302a0b2fc562ff01c6b6 files/digest-tgi-tools-0.1 2402
-SHA256 228c18a3a616b8bb8c1c977bfe05a5908bc5795380e9886dd7e3d8ed02c5042d files/digest-tgi-tools-0.1 2402
diff --git a/sci-biology/tgi-tools/files/digest-tgi-tools-0.1 b/sci-biology/tgi-tools/files/digest-tgi-tools-0.1
deleted file mode 100644
index 366567bf2..000000000
--- a/sci-biology/tgi-tools/files/digest-tgi-tools-0.1
+++ /dev/null
@@ -1,33 +0,0 @@
-MD5 e42d20b19adeafdf4162f32482bce1b0 cdbfasta.tar.gz 23470
-RMD160 d587deaac94eced97728b0596022ea5e6a1bc75e cdbfasta.tar.gz 23470
-SHA256 6862061d923f49579568e62be06bf434e79dbb56dfafe573353b4eb7d8ab9c9c cdbfasta.tar.gz 23470
-MD5 9cd31b3a1647c3e0f955694a57903c0a mdust.tar.gz 7526
-RMD160 c04a6ba5a56724bfee70b8fe31f0bf4132b74885 mdust.tar.gz 7526
-SHA256 9722806920fc6772dc92f99e7a59554c5f7c35b596dca0df9ed03ff2e5c6440d mdust.tar.gz 7526
-MD5 1888e9dc225052b3b9bda1ca9e6b0e03 nrcl.tar.gz 13151
-RMD160 65f2e829fcf2da0134873eaa13098995b4472e15 nrcl.tar.gz 13151
-SHA256 3402a3efb38e3c7320831ca07e228374bbbba34d5b8a161446a7fc0bf4397808 nrcl.tar.gz 13151
-MD5 09e181d2c5e71460164e301a24a055cf psx.tar.gz 7797
-RMD160 2b6de75126f19cbb60e1ed0b9988a935ad021a45 psx.tar.gz 7797
-SHA256 6759f1001be93fcfca9cebd0c764088c4942f2d7feee100d10cf2fbb39e4cd5a psx.tar.gz 7797
-MD5 7350f170008b232c1935de743cc40c4e pvmsx.tar.gz 10963
-RMD160 1d14cb6e25a533f8a9879b04c5eb9e04532874e5 pvmsx.tar.gz 10963
-SHA256 c403534a0d13c2457a50c8ff5e9aeb5979d91a56307478b6420b5caf40e62230 pvmsx.tar.gz 10963
-MD5 a8bc3fb633bf1a3dcd56cbde29352dac sclust.tar.gz 14370
-RMD160 1334a6a555c6ed3c8ad03ed697887bba76e8441e sclust.tar.gz 14370
-SHA256 4550350993a56d4e5e7163247965d4af91c32cc40ff7e0eeff3a0c6e04fd8ef4 sclust.tar.gz 14370
-MD5 ce4a5cc23c6458dd959e0e5dd0cd22ce seqclean.tar.gz 181383
-RMD160 d3faae9e342e95dcbd66d39d80eb7e53f0527275 seqclean.tar.gz 181383
-SHA256 4175b6ca7d93a7ea39e6dfb513500205c29a61b393a96bb2a7861a5540fd0d6d seqclean.tar.gz 181383
-MD5 a0893732e9e427978bf6d460727619a5 tclust.tar.gz 8864
-RMD160 e77a8ce86fa779bbce7c46efbce2245ec7735681 tclust.tar.gz 8864
-SHA256 d4f9714f56f77c0e31f0ec9cd9da374899184f40fd688b06292e40412fbb7445 tclust.tar.gz 8864
-MD5 c568ef74bab896d09c2773b0764d8b31 tgi_cpp_library.tar.gz 58212
-RMD160 a85d0e0232a3956f93e521a73075d81d5ecfaaf3 tgi_cpp_library.tar.gz 58212
-SHA256 555a81a63233d725868f6179cf3f5d74cceaa040058e2e4ded20f95487c89875 tgi_cpp_library.tar.gz 58212
-MD5 dcaee491b6a6765673164acc1158fa3a trimpoly.tar.gz 12562
-RMD160 7345812dbbcea3d7fd2018ba1b04254863d171a4 trimpoly.tar.gz 12562
-SHA256 aa8f4a47d45ee534a15edf8e325f341a72d0ce0fa659ccfd8591c15bef44da4f trimpoly.tar.gz 12562
-MD5 94fd4565d949e140f237d3b2a4c16212 zmsort.tar.gz 5537
-RMD160 cf6599dbd417f5ea50ec41db7909a2415ac28e68 zmsort.tar.gz 5537
-SHA256 32c5b72e22ae0fbd1784174dcff74e1a40817e29e98b2a0a32a21d83ace6b7fd zmsort.tar.gz 5537
diff --git a/sci-biology/tgi-tools/metadata.xml b/sci-biology/tgi-tools/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/tgi-tools/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild b/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
deleted file mode 100644
index 9a50c4bb3..000000000
--- a/sci-biology/tgi-tools/tgi-tools-0.1.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="The Gene Index Project utilities for genomic data processing: seqclean, cdbfasta, psx"
-HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"
-
-for i in seqclean/{seqclean,mdust,trimpoly} cdbfasta/cdbfasta tgicl/{psx,pvmsx,zmsort,tclust,sclust,nrcl,tgi_cpp_library}; do
- SRC_URI="${SRC_URI} ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/${i}.tar.gz"
-done
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE="pvm"
-KEYWORDS="~x86"
-
-DEPEND="pvm? ( sys-cluster/pvm )"
-RDEPEND=${DEPEND}
-
-S=${WORKDIR}
-
-src_unpack() {
- unpack {seqclean,mdust,trimpoly,cdbfasta,tgi_cpp_library}.tar.gz
- for i in nrcl sclust tclust zmsort psx pvmsx; do
- mkdir "${S}"/${i}
- cd "${S}"/${i}
- unpack ${i}.tar.gz
- done
-}
-
-src_compile() {
- sed -i 's/use Mailer;/#use Mailer;/' ${S}/seqclean/seqclean
- sed -i 's/-V\t\tverbose/-V\t\tverbose\\/' ${S}/zmsort/zmsort.cpp
- # TODO: fix error in nrcl
- for i in cdbfasta mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do
- sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${i}/Makefile
- cd ${S}/${i} || die "cd ${i} failed"
- emake || die "emake failed in ${i}"
- done
-}
-
-src_install() {
- dobin cdbfasta/{cdbfasta,cdbyank} seqclean/{seqclean,cln2qual,bin/seqclean.psx}
- for i in mdust psx sclust tclust trimpoly zmsort $(use pvm && echo pvmsx); do
- dobin ${i}/${i}
- done
- for i in cdbfasta seqclean; do
- newdoc ${i}/README README.${i}
- done
-}
diff --git a/sci-biology/tigr-assembler/ChangeLog b/sci-biology/tigr-assembler/ChangeLog
deleted file mode 100644
index 8ac88cca5..000000000
--- a/sci-biology/tigr-assembler/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/tigr-assembler
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 27 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx>
- +tigr-assembler-2.0.ebuild:
- Mass import from sunrise
-
- 19 Apr 2007; Andrey Kislyuk <weaver@horizon.ath.cx> +tigr-assembler-2.0.ebuild,
- +metadata.xml:
- new package (bug 175282)
-
diff --git a/sci-biology/tigr-assembler/Manifest b/sci-biology/tigr-assembler/Manifest
deleted file mode 100644
index 04f274a7e..000000000
--- a/sci-biology/tigr-assembler/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST TIGR_Assembler_v2.tar.gz 3252950 RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 SHA1 8bd1886eb33d203598ac03decc7798a1fa0d85d7 SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42
-EBUILD tigr-assembler-2.0.ebuild 635 RMD160 d899446e7e35320a8a3023d690c45c58b939e062 SHA1 ed6846be95b4b769205fcfa16dfdb4cd4ddb430c SHA256 75cecd058f71fb26541672c951bfeb6461a4e7f021d635ddc377bc83e8cea25c
-MD5 a5fab4210ac95955cd08785622ac6a53 tigr-assembler-2.0.ebuild 635
-RMD160 d899446e7e35320a8a3023d690c45c58b939e062 tigr-assembler-2.0.ebuild 635
-SHA256 75cecd058f71fb26541672c951bfeb6461a4e7f021d635ddc377bc83e8cea25c tigr-assembler-2.0.ebuild 635
-MISC ChangeLog 366 RMD160 456390461b0286ece0f75002dcd49f90bd42e754 SHA1 a6d057fde4a594d8fb2d127bbb443d85ea039d9a SHA256 9b8273b2bfb0bd78ef4656523a6edd6e4fc4d4467c90fdc34995c1f95662c288
-MD5 5fd015ba27ac7f2f4fcaffb0ce3d5ee1 ChangeLog 366
-RMD160 456390461b0286ece0f75002dcd49f90bd42e754 ChangeLog 366
-SHA256 9b8273b2bfb0bd78ef4656523a6edd6e4fc4d4467c90fdc34995c1f95662c288 ChangeLog 366
-MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42
-MD5 1e678929a9fec6632e227bdf2262e9a1 metadata.xml 170
-RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 metadata.xml 170
-SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 metadata.xml 170
-MD5 34ea976ee140a76384b08b8d33f832b0 files/digest-tigr-assembler-2.0 256
-RMD160 88adcd5f128ee53e27bef0bfef88f7e45e11344d files/digest-tigr-assembler-2.0 256
-SHA256 240d7e7304c146d042614059a62e89a5a4911483cba0c8895731f1aadbcffdf2 files/digest-tigr-assembler-2.0 256
diff --git a/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0 b/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0
deleted file mode 100644
index 738d485c7..000000000
--- a/sci-biology/tigr-assembler/files/digest-tigr-assembler-2.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 70b56f15fc9e44436abf67ca8ba909fa TIGR_Assembler_v2.tar.gz 3252950
-RMD160 5b7eaeebf8791acb3b53ab864f6e9c6571c70877 TIGR_Assembler_v2.tar.gz 3252950
-SHA256 b5b660db388788173f7bd9778fe9b1e904bed7f6a464ab6cc92cd4608e70fd42 TIGR_Assembler_v2.tar.gz 3252950
diff --git a/sci-biology/tigr-assembler/metadata.xml b/sci-biology/tigr-assembler/metadata.xml
deleted file mode 100644
index 7e3286984..000000000
--- a/sci-biology/tigr-assembler/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>maintainer-wanted</herd>
-</pkgmetadata>
diff --git a/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild b/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild
deleted file mode 100644
index bc42ce0b6..000000000
--- a/sci-biology/tigr-assembler/tigr-assembler-2.0.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A whole-genome shotgun assembler from TIGR"
-HOMEPAGE="http://www.tigr.org/software/assembler/"
-SRC_URI="ftp://ftp.tigr.org/pub/software/assembler/TIGR_Assembler_v2.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/TIGR_Assembler_v2"
-
-src_compile() {
- sed -i 's/CFLAGS.*= -O/CFLAGS := -O ${CFLAGS}/' "${S}/src/Makefile" || die "sed failed"
- cd "${S}/src"
- emake || die "emake failed"
-}
-
-src_install() {
- dobin bin/{run_TA,TIGR_Assembler}
- dodoc README
-}
diff --git a/sci-chemistry/gtk-gamess/ChangeLog b/sci-chemistry/gtk-gamess/ChangeLog
deleted file mode 100644
index 6b4d550be..000000000
--- a/sci-chemistry/gtk-gamess/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-chemistry/gtk-gamess
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 04 Jan 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
- Initial gtk-gamess ebuild.
-
diff --git a/sci-chemistry/gtk-gamess/Manifest b/sci-chemistry/gtk-gamess/Manifest
deleted file mode 100644
index 5cdfc9df8..000000000
--- a/sci-chemistry/gtk-gamess/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST gtk-gamess-2.00.tar.gz 174125 RMD160 6c57d9222027bdd533980a8bcc138491ce6c8e28 SHA1 66dfddeb756a0cb683815502da3f29ce812a4fdc SHA256 f282cdb94ddccba196b2ea0964cc2c26e3a4db5c8ac3b9f51d72a5a0e45f9e0e
-EBUILD gtk-gamess-2.00.ebuild 592 RMD160 52b1f0e81349f7355241f2a5e7846141f87a40e0 SHA1 444e4f7c1482acc8610ac381a07fc0f14f2451af SHA256 8134e375e0109a49e169e64abc5e3a54e9d4fe98c782cadd85cc4691d6864537
-MD5 ece5fb7eecf346e4f8b1ae695376f8ef gtk-gamess-2.00.ebuild 592
-RMD160 52b1f0e81349f7355241f2a5e7846141f87a40e0 gtk-gamess-2.00.ebuild 592
-SHA256 8134e375e0109a49e169e64abc5e3a54e9d4fe98c782cadd85cc4691d6864537 gtk-gamess-2.00.ebuild 592
-MISC ChangeLog 214 RMD160 27a836a30d4e2932b3efd7aad3cf91e2d3a30275 SHA1 8a7388a436e2669b53052d748b78833371e93b46 SHA256 7ea6c6afc562b04c415e7d9ecb8ac2d2beac50deb8b813b6b46f60e98d554683
-MD5 d8d2ca20c4e26b530a4c94d8ee3f8c22 ChangeLog 214
-RMD160 27a836a30d4e2932b3efd7aad3cf91e2d3a30275 ChangeLog 214
-SHA256 7ea6c6afc562b04c415e7d9ecb8ac2d2beac50deb8b813b6b46f60e98d554683 ChangeLog 214
-MISC metadata.xml 392 RMD160 2d06a6dd8c2e049f9f9994ef8e08d7fd1bbf96b2 SHA1 c4b76377f98397b277c82ced30a9a839901a5e69 SHA256 48aab8e6edc81adc6436c92cc90a65d169e909ec03e6999b1788a14f5dbc7cc1
-MD5 60a56bfc817b25e51cce02d3dd34fb8b metadata.xml 392
-RMD160 2d06a6dd8c2e049f9f9994ef8e08d7fd1bbf96b2 metadata.xml 392
-SHA256 48aab8e6edc81adc6436c92cc90a65d169e909ec03e6999b1788a14f5dbc7cc1 metadata.xml 392
-MD5 5cab4a143ce219d51f29e51ad84ee93b files/digest-gtk-gamess-2.00 247
-RMD160 d882f88459b7bb49f9174dfd48223d148c49e440 files/digest-gtk-gamess-2.00 247
-SHA256 79770943dd1466e9339c39d7cdb95ed7d73e940802274c7d854f739e5ccd87fb files/digest-gtk-gamess-2.00 247
diff --git a/sci-chemistry/gtk-gamess/files/digest-gtk-gamess-2.00 b/sci-chemistry/gtk-gamess/files/digest-gtk-gamess-2.00
deleted file mode 100644
index 1bfa76d7f..000000000
--- a/sci-chemistry/gtk-gamess/files/digest-gtk-gamess-2.00
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e5f13e691d3ff7bfae01b205a62c38ab gtk-gamess-2.00.tar.gz 174125
-RMD160 6c57d9222027bdd533980a8bcc138491ce6c8e28 gtk-gamess-2.00.tar.gz 174125
-SHA256 f282cdb94ddccba196b2ea0964cc2c26e3a4db5c8ac3b9f51d72a5a0e45f9e0e gtk-gamess-2.00.tar.gz 174125
diff --git a/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild b/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild
deleted file mode 100644
index f79ac6d21..000000000
--- a/sci-chemistry/gtk-gamess/gtk-gamess-2.00.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="GTK-GAMESS is a graphical frontend for GAMESS, a General Atomic and Molecular Electronic Structure System"
-HOMEPAGE="http://sourceforge.net/projects/gtk-gamess/"
-
-SRC_URI="mirror://sourceforge/gtk-gamess/${P}.tar.gz"
-LICENSE="GPL-2"
-
-SLOT="0"
-
-KEYWORDS="~amd64"
-
-IUSE=""
-
-RDEPEND=">=gnome-base/libglade-2.4
- >=x11-libs/gtk+-2.6
- dev-libs/libxml2
- sci-chemistry/gamess"
-
-src_install() {
-
- make DESTDIR="${D}" install || die "install failed"
- dodoc README
-}
-
diff --git a/sci-chemistry/gtk-gamess/metadata.xml b/sci-chemistry/gtk-gamess/metadata.xml
deleted file mode 100644
index 141e5e93f..000000000
--- a/sci-chemistry/gtk-gamess/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-<email>je_fro@gentoo.org</email>
-<name>Jeff Gardner</name>
-</maintainer>
-<longdescription lang="en">
-gtk-gamess is a frontend to GAMESS that allows users to queue and run quantum
-chemistry calculations.
-</longdescription>
-</pkgmetadata>
-
diff --git a/sci-electronics/gerbv/ChangeLog b/sci-electronics/gerbv/ChangeLog
deleted file mode 100644
index b7d6288b7..000000000
--- a/sci-electronics/gerbv/ChangeLog
+++ /dev/null
@@ -1,83 +0,0 @@
-# ChangeLog for sci-electronics/gerbv
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-electronics/gerbv/ChangeLog,v 1.13 2006/07/23 22:05:37 tsunam Exp $
-
-*gerbv-1.0.2 (03 Aug 2006)
-
- 03 Aug 2006; Lucas Chiesa <lucas.chiesa@gmail.com> gerbv-1.0.2.ebuild:
- Added new ebuild for 1.0.2.
-
- 23 Jul 2006; Joshua Jackson <tsunam@gentoo.org> gerbv-1.0.1-r1.ebuild:
- Stable x86; bug #141421
-
- 23 Jul 2006; Tobias Scherbaum <dertobi123@gentoo.org>
- gerbv-1.0.1-r1.ebuild:
- ppc stable, bug #141421
-
- 02 Jul 2006; Denis Dupeyron <calchan@gentoo.org> metadata.xml:
- Adjusted metadata, see bug #138062.
-
- 13 Mar 2006; Scott Stoddard <deltacow@gentoo.org> gerbv-1.0.1-r1.ebuild:
- Added ~amd64.
-
- 10 Mar 2006; <plasmaroo@gentoo.org> gerbv-1.0.1-r1.ebuild,
- +files/gerbv-1.0.0-gcc-4.10.patch:
- Fix GCC4 compile issue (bug #125186).
-
- 22 Jan 2006; <plasmaroo@gentoo.org> gerbv-0.15.ebuild, gerbv-0.16-r1.ebuild,
- -gerbv-0.16.ebuild, gerbv-1.0.1-r1.ebuild, -gerbv-1.0.1.ebuild:
- Port to modular X; clear up stale ebuilds.
-
-*gerbv-1.0.1-r1 (01 Oct 2005)
-*gerbv-0.16-r1 (01 Oct 2005)
-
- 01 Oct 2005; Olivier Fisette <ribosome@gentoo.org> +gerbv-0.16-r1.ebuild,
- +gerbv-1.0.1-r1.ebuild:
- Removing deprecated "gtk2" USE flag (bug #106560).
-
- 17 May 2005; Michael Hanselmann <hansmi@gentoo.org> gerbv-0.15.ebuild:
- Stable on ppc.
-
-*gerbv-1.0.1 (13 Mar 2005)
-
- 13 Mar 2005; <plasmaroo@gentoo.org> -gerbv-1.0.0.ebuild,
- +gerbv-1.0.1.ebuild:
- Version bump; bug #83007.
-
- 18 Feb 2005; Michael Hanselmann <hansmi@gentoo.org> gerbv-1.0.0.ebuild:
- Added to ~ppc.
-
-*gerbv-1.0.0 (02 Jan 2005)
-
- 02 Jan 2005; <plasmaroo@gentoo.org> +gerbv-1.0.0.ebuild,
- +files/gerbv-1.0.0-Xinerama.patch:
- Version bump.
-
-*gerbv-0.16 (27 Dec 2004)
-
- 27 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
- +gerbv-0.15.ebuild, +gerbv-0.16.ebuild:
- Moved from app-sci/gerbv to sci-electronics/gerbv.
-
- 23 Oct 2004; <plasmaroo@gentoo.org> gerbv-0.15.ebuild:
- Added "media-libs/gdk-pixbuf" dependency; bug #67304.
-
-*gerbv-0.16 (24 Jun 2004)
-
- 24 Jun 2004; <plasmaroo@gentoo.org> +gerbv-0.16.ebuild:
- Version bump.
-
- 05 Jun 2004; David Holm <dholm@gentoo.org> gerbv-0.15.ebuild:
- Added to ~ppc.
-
- 19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> gerbv-0.15.ebuild:
- Removed S, added IUSE
-
- 30 Mar 2004; Donnie Berkholz <spyderous@gentoo.org>; gerbv-0.15.ebuild:
- Change x11-base/xfree dependency to virtual/x11.
-
-*gerbv-0.15 (27 Nov 2003)
-
- 27 Nov 2003; <plasmaroo@gentoo.org> gerbv-0.15.ebuild:
- Initial import.
-
diff --git a/sci-electronics/gerbv/Manifest b/sci-electronics/gerbv/Manifest
deleted file mode 100644
index dd96e7158..000000000
--- a/sci-electronics/gerbv/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX gerbv-1.0.0-Xinerama.patch 1484 RMD160 0cd65704d2c458424c259c40026d9140a96e4e52 SHA1 8c3dfe7343a83708ece91b9f5bad036a2267ca31 SHA256 db0e17a39e3f8852453cd31000173fc9e3454c7bfa02cff3bcf5bfe8cdd75079
-MD5 8406753908cf0fbdd37a69d1867720db files/gerbv-1.0.0-Xinerama.patch 1484
-RMD160 0cd65704d2c458424c259c40026d9140a96e4e52 files/gerbv-1.0.0-Xinerama.patch 1484
-SHA256 db0e17a39e3f8852453cd31000173fc9e3454c7bfa02cff3bcf5bfe8cdd75079 files/gerbv-1.0.0-Xinerama.patch 1484
-DIST gerbv-1.0.2.tar.gz 1066247 RMD160 f5d7e00fd9576f6ed8d0f1dee457fc9dd2c98c26 SHA1 4ed3bd604eaf6bbefc868f3eb6e379d28ecc0f84 SHA256 87ec664cc5b161047d017f0ca9fbb5de9e428186f010c1f869ecd0a6384e0e7d
-EBUILD gerbv-1.0.2.ebuild 1012 RMD160 b30597b8edb23485dfd57aa1042c0073c1291f54 SHA1 864d806f040d6c6336e880cee3159343c0dd86a3 SHA256 5bfe25fa99847dc1228f9464f8ee8cd9a580869571712f3a8a5be7fde6b16c7b
-MD5 3340616904fe835bfb0e1474ddbd3dc4 gerbv-1.0.2.ebuild 1012
-RMD160 b30597b8edb23485dfd57aa1042c0073c1291f54 gerbv-1.0.2.ebuild 1012
-SHA256 5bfe25fa99847dc1228f9464f8ee8cd9a580869571712f3a8a5be7fde6b16c7b gerbv-1.0.2.ebuild 1012
-MISC ChangeLog 2576 RMD160 2439ea25264684ed87c602df0915928ec2cb7e89 SHA1 5e692f4f2139983ef6bbabe3ca1beab2cbb7ccc2 SHA256 cf8d0f799ac7ee9b83ede9cf85c99c660d50a1e5334ea41e3f9bffd92ed7a03e
-MD5 b09a07b4c88d24efd3122eb23166e4f3 ChangeLog 2576
-RMD160 2439ea25264684ed87c602df0915928ec2cb7e89 ChangeLog 2576
-SHA256 cf8d0f799ac7ee9b83ede9cf85c99c660d50a1e5334ea41e3f9bffd92ed7a03e ChangeLog 2576
-MISC metadata.xml 414 RMD160 0801ddc4c2838d5fdc7ceae7454035fc373d2877 SHA1 b91b7436fc30f9a340fcd030dcc5a809843c03ea SHA256 437f367a7dd127a77d7f0e4880e29ce42b36d6eb2bde9e318142ac45f530851d
-MD5 38c411d4da1ca5929c2f81f849b0f8b5 metadata.xml 414
-RMD160 0801ddc4c2838d5fdc7ceae7454035fc373d2877 metadata.xml 414
-SHA256 437f367a7dd127a77d7f0e4880e29ce42b36d6eb2bde9e318142ac45f530851d metadata.xml 414
-MD5 a6f5b5214a3f0eec1beb56937369cd44 files/digest-gerbv-1.0.2 238
-RMD160 271d3b298ea0e0ebdbb1ff750f251df8aacf6f8f files/digest-gerbv-1.0.2 238
-SHA256 5818fe34cd7491ef3308004309c2892acd858b3e20925ff74bc218d547576ae2 files/digest-gerbv-1.0.2 238
diff --git a/sci-electronics/gerbv/files/digest-gerbv-1.0.2 b/sci-electronics/gerbv/files/digest-gerbv-1.0.2
deleted file mode 100644
index c1a8e30e3..000000000
--- a/sci-electronics/gerbv/files/digest-gerbv-1.0.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 2d5dccd9a060e92916bb7a41ef5433e6 gerbv-1.0.2.tar.gz 1066247
-RMD160 f5d7e00fd9576f6ed8d0f1dee457fc9dd2c98c26 gerbv-1.0.2.tar.gz 1066247
-SHA256 87ec664cc5b161047d017f0ca9fbb5de9e428186f010c1f869ecd0a6384e0e7d gerbv-1.0.2.tar.gz 1066247
diff --git a/sci-electronics/gerbv/files/gerbv-1.0.0-Xinerama.patch b/sci-electronics/gerbv/files/gerbv-1.0.0-Xinerama.patch
deleted file mode 100644
index 40e296b8c..000000000
--- a/sci-electronics/gerbv/files/gerbv-1.0.0-Xinerama.patch
+++ /dev/null
@@ -1,44 +0,0 @@
-diff -ur gerbv-1.0.0/ChangeLog gerbv-1.0.0.new/ChangeLog
---- gerbv-1.0.0/ChangeLog 2004-12-27 23:31:10.000000000 +0000
-+++ gerbv-1.0.0.new/ChangeLog 2005-01-02 01:54:21.074734456 +0000
-@@ -269,6 +269,10 @@
- * src/gerber.c: Doesn't warn anymore if a gerber file requests an
- image rotate on zero degrees. Reported by Balaji V.
-
-+2003-03-03 Jeffrey W. Baker <jwbaker@acm.org>
-+
-+ * src/gerbv.c: fix initial window size for multihead systems.
-+
- 2003-03-02 Stefan Petersen <spe@stacken.kth.se>
-
- * src/draw_amacro.c: Aperture macro primitive 1 is a filled circle.
-diff -ur gerbv-1.0.0/src/gerbv.c gerbv-1.0.0.new/src/gerbv.c
---- gerbv-1.0.0/src/gerbv.c 2004-09-24 20:12:25.000000000 +0100
-+++ gerbv-1.0.0.new/src/gerbv.c 2005-01-02 01:53:21.241830440 +0000
-@@ -2485,7 +2485,7 @@
- GtkWidget *hbox;
- GtkWidget *menubar;
- GtkStyle *textStyle;
-- gint screen_width, width, height;
-+ gint width, height;
- int read_opt;
- int i;
- int req_width = -1, req_height = -1, req_x = 0, req_y = 0;
-@@ -2611,9 +2610,14 @@
- width = req_width;
- height = req_height;
- } else {
-- screen_width = gdk_screen_width();
-- width = screen_width * 3/4;
-- height = width * 3/4;
-+ GdkScreen *screen;
-+ int nmonitors;
-+
-+ screen = gdk_screen_get_default();
-+ nmonitors = gdk_screen_get_n_monitors(screen);
-+
-+ width = gdk_screen_get_width(screen) * 3/4 / nmonitors;
-+ height = gdk_screen_get_height(screen) * 3/4 / nmonitors;
- }
-
- /*
diff --git a/sci-electronics/gerbv/gerbv-1.0.2.ebuild b/sci-electronics/gerbv/gerbv-1.0.2.ebuild
deleted file mode 100644
index c5bc53e6d..000000000
--- a/sci-electronics/gerbv/gerbv-1.0.2.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-electronics/gerbv/gerbv-1.0.1-r1.ebuild,v 1.6 2006/07/23 22:05:37 tsunam Exp $
-
-inherit eutils
-
-DESCRIPTION="gerbv - The gEDA Gerber Viewer"
-SRC_URI="http://www.geda.seul.org/dist/${P}.tar.gz"
-HOMEPAGE="http://www.geda.seul.org"
-
-IUSE="doc png xinerama"
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~ppc ~x86"
-
-DEPEND="=x11-libs/gtk+-2*
- png? ( media-libs/libpng
- media-libs/gdk-pixbuf )"
-
-src_compile() {
- local confOptions
-
- confOptions='--enable-gtk2'
- use xinerama && epatch ${FILESDIR}/${PN}-1.0.0-Xinerama.patch
- use png || confOptions="$confOptions --disable-exportpng"
-
- econf $confOptions || die
- emake || die
-}
-
-src_install () {
- make DESTDIR=${D} install || die
- dodoc AUTHORS COPYING ChangeLog NEWS README TODO
- if use doc; then
- cd doc
- dodoc sources.txt
- use png && dodoc PNG-print/PNGPrintMiniHowto.txt
- docinto eagle
- dodoc eagle/eagle2exc*
- fi
-}
diff --git a/sci-electronics/gerbv/metadata.xml b/sci-electronics/gerbv/metadata.xml
deleted file mode 100644
index 80893f75d..000000000
--- a/sci-electronics/gerbv/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-electronics</herd>
- <longdescription>
- Gerber Viewer (gerbv) is a viewer for Gerber files. The standard supported by
- gerbv is RS-274X. gerbv also supports drill files. The format supported are
- known under names as NC-drill or Excellon.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-electronics/gsmc/ChangeLog b/sci-electronics/gsmc/ChangeLog
deleted file mode 100644
index 4935e3795..000000000
--- a/sci-electronics/gsmc/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-electronics/gsmc
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 23 Oct 2005; Lucas Chiesa <lucas.chiesa@gmail.com> gsmc-1.0.ebuild:
- Changed ${PN}-${PV} to ${P}. It now depends on >=x11-libs/gkt+-2.6.8.
- Removed PREFIX=/usr/ from the make install line.
-
-*gsmc-1.0 (23 Oct 2005)
-
- 23 Oct 2005; Lucas Chiesa <lucas.chiesa@gmail.com> gsmc-1.0.ebuild:
- Initial import of gsmc - A program for doing Smith Chart calculations.
diff --git a/sci-electronics/gsmc/Manifest b/sci-electronics/gsmc/Manifest
deleted file mode 100644
index fba4d2131..000000000
--- a/sci-electronics/gsmc/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST gsmc-1.0.tar.gz 77095 RMD160 ac0f89204a5e450d6e3675be9ea81846680d6d30 SHA1 cc46769c39511d08c81a1c37590c8f89d5e61f32 SHA256 59386860b15d921375f2a254c92f0264dee23642d66fb864fea4940471690c59
-EBUILD gsmc-1.0.ebuild 557 RMD160 3029c263e520f8a59c0f7679de9b306be1f82e47 SHA1 aaef2777dd359a3376d03c1b1e412184e633fa71 SHA256 d99c9925f804c6dd31cdb73d224edb32a26d0e5eec2f342f6c8cf60c442961fb
-MD5 5a711b398637aa0e19984d1000bd9ba8 gsmc-1.0.ebuild 557
-RMD160 3029c263e520f8a59c0f7679de9b306be1f82e47 gsmc-1.0.ebuild 557
-SHA256 d99c9925f804c6dd31cdb73d224edb32a26d0e5eec2f342f6c8cf60c442961fb gsmc-1.0.ebuild 557
-MISC ChangeLog 483 RMD160 4c652163bd09de7957d8d8601de03c147e424cc8 SHA1 e3701e077e2dabcba453d851433475c8d40f1386 SHA256 3b5c38e78cc97a60a151e1b85e13a3435a052b059139bd2723ec5ad632b4a1f9
-MD5 5c46087c8d38096a3ce67c3772714523 ChangeLog 483
-RMD160 4c652163bd09de7957d8d8601de03c147e424cc8 ChangeLog 483
-SHA256 3b5c38e78cc97a60a151e1b85e13a3435a052b059139bd2723ec5ad632b4a1f9 ChangeLog 483
-MISC metadata.xml 253 RMD160 a980be058c9a5aee8bee00e48c38ef728155a038 SHA1 176bcb0c5ee8f51bf2a1dd312fc5677993fa9211 SHA256 40e278af9ee48e5fcdef1a7b8b988c17c55bbcbf6f5e6c3bbc4c8ee833f6b055
-MD5 924d6f15d4bf0da33e4ce42a8be76858 metadata.xml 253
-RMD160 a980be058c9a5aee8bee00e48c38ef728155a038 metadata.xml 253
-SHA256 40e278af9ee48e5fcdef1a7b8b988c17c55bbcbf6f5e6c3bbc4c8ee833f6b055 metadata.xml 253
-MD5 1e9b7aac8b2a01c0ee8dc3987e7d29fd files/digest-gsmc-1.0 223
-RMD160 e2c54033ef8808400e08a4a3e26b3f4b43cd183c files/digest-gsmc-1.0 223
-SHA256 591c6b4ad72f5f0b55835cb975ff353ec88763d596f6e5a5045268129d684d08 files/digest-gsmc-1.0 223
diff --git a/sci-electronics/gsmc/files/digest-gsmc-1.0 b/sci-electronics/gsmc/files/digest-gsmc-1.0
deleted file mode 100644
index 29bbbe1c7..000000000
--- a/sci-electronics/gsmc/files/digest-gsmc-1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 62c8dfef5fda9ecb52ee656ff3559a79 gsmc-1.0.tar.gz 77095
-RMD160 ac0f89204a5e450d6e3675be9ea81846680d6d30 gsmc-1.0.tar.gz 77095
-SHA256 59386860b15d921375f2a254c92f0264dee23642d66fb864fea4940471690c59 gsmc-1.0.tar.gz 77095
diff --git a/sci-electronics/gsmc/gsmc-1.0.ebuild b/sci-electronics/gsmc/gsmc-1.0.ebuild
deleted file mode 100644
index 3c8aae490..000000000
--- a/sci-electronics/gsmc/gsmc-1.0.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-DESCRIPTION="A GTK program for doing Smith Chart calculations"
-HOMEPAGE="http://www.qsl.net/ik5nax/"
-SRC_URI="http://www.qsl.net/ik5nax/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=">=x11-libs/gtk+-2.6.8"
-RDEPEND=""
-
-src_compile() {
- econf || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install() {
- make DESTDIR=${D} install || die "make install failed"
- dodoc AUTHORS NEWS README ChangeLog TODO
-}
diff --git a/sci-electronics/gsmc/metadata.xml b/sci-electronics/gsmc/metadata.xml
deleted file mode 100644
index 06a199400..000000000
--- a/sci-electronics/gsmc/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
- <email> lucas.chiesa@gmail.com </email>
- <name> Lucas Chiesa </name>
-</maintainer>
-</pkgmetadata>
diff --git a/sci-electronics/linsmith/ChangeLog b/sci-electronics/linsmith/ChangeLog
deleted file mode 100644
index cd013f628..000000000
--- a/sci-electronics/linsmith/ChangeLog
+++ /dev/null
@@ -1,48 +0,0 @@
-# ChangeLog for sci-electronics/linsmith
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*linsmith-0.99.1 (15 Jul 2006)
-
- 15 Jul 2006; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.99.1.ebuild:
- Version bump. Removed previous versions.
-
-*linsmith-0.9.8 (06 Jul 2006)
-
- 06 Jul 2006; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.8.ebuild:
- Version bump. Removed previous versions.
-
- 14 Apr 2006; Marcus D. Hanwell <cryos@gentoo.org> linsmith-0.9.5.ebuild:
- Various small cleanups of the ebuild, added examples USE flag and marked
- ~amd64.
-
-*linsmith-0.9.5 (14 Apr 2006)
-
- 14 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.5.ebuild:
- Version bump.
-
-*linsmith-0.9.4 (09 Apr 2006)
-
- 09 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.4.ebuild:
- Version bump. Fixed bug which prevented the documentation from being
- installed when USE="doc" was used. Removed previous versions.
-
-*linsmith-0.9.2 (16 Nov 2005)
-
- 16 Nov 2005; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.2.ebuild:
- Added ebuild for linsmith 0.9.2. Removed lyx dependency as the documentation
- is now distributed in pdf. Added desktop and icon file.
-
-*linsmith-0.9.1 (3 Nov 2005)
-
- 3 Nov 2005; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.1.ebuild:
- Added doc use flag which compiles a lyx manual included in the source.
- Patch Makefile.am to prevent it installing examples in /usr/share/linsmith.
- Added the man page from the debian package.
-
-*linsmith-0.9.0_alpha3 (25 Oct 2005)
-
- 23 Oct 2005; Lucas Chiesa <lucas.chiesa@gmail.com> linsmith-0.9.0_alpha3:
- Initial import of lismith - Smith Charting program, mainly designed for
- educational use. Thanks to Vincent Paeder <vpaeder@net2000.ch> for the initial
- ebuild. Closes bug #79082.
diff --git a/sci-electronics/linsmith/Manifest b/sci-electronics/linsmith/Manifest
deleted file mode 100644
index 72466af16..000000000
--- a/sci-electronics/linsmith/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX linsmith-datafiles.patch 757 RMD160 61cbef351c36677c6a894e3c017c1f57a5724b00 SHA1 54a13968f2593868d483fc221899141f95b61f8d SHA256 b39d2ece3aac52e0bfe35010c436771aa9fa623f2508f290d36e40853fe979ce
-MD5 8eed8f5e5acb161567180193e3c94642 files/linsmith-datafiles.patch 757
-RMD160 61cbef351c36677c6a894e3c017c1f57a5724b00 files/linsmith-datafiles.patch 757
-SHA256 b39d2ece3aac52e0bfe35010c436771aa9fa623f2508f290d36e40853fe979ce files/linsmith-datafiles.patch 757
-DIST linsmith-0.99.1.tar.gz 949495 RMD160 abfd52f666bdd41959883160fcd8c16c1f398302 SHA1 b892b3dfdc4ea5575fc132fca32e5ff1b4ecef48 SHA256 5f58d0419f77be3b9f8e308dda3844121f0b6498e9cdd8f91ba72214a780b3b7
-EBUILD linsmith-0.99.1.ebuild 1437 RMD160 27722c1753caeac6eab30c7e61f6d7b78dffa105 SHA1 122d3002ad8d61dd45fb5f788a64e993403cc4e4 SHA256 9938543742745fdaae8f71ca6f2ce133e08a0f492b7b8eacf10c51b3c0d5a001
-MD5 17be93c919af33ce8439e6aebf12249d linsmith-0.99.1.ebuild 1437
-RMD160 27722c1753caeac6eab30c7e61f6d7b78dffa105 linsmith-0.99.1.ebuild 1437
-SHA256 9938543742745fdaae8f71ca6f2ce133e08a0f492b7b8eacf10c51b3c0d5a001 linsmith-0.99.1.ebuild 1437
-MISC ChangeLog 1810 RMD160 30f98154ce8ebf59d3407f4aacc8800d7d738743 SHA1 6f4b49a54f89440a0c8d9d5ca69a971341d2d32d SHA256 958f30994e4c89fd5d694eed230f01aed969f00f9d71e97130095fee3d555d36
-MD5 b577a5977848000a1c1fcc5795f0545c ChangeLog 1810
-RMD160 30f98154ce8ebf59d3407f4aacc8800d7d738743 ChangeLog 1810
-SHA256 958f30994e4c89fd5d694eed230f01aed969f00f9d71e97130095fee3d555d36 ChangeLog 1810
-MISC metadata.xml 272 RMD160 c1308e7326e25dcbbd93cebf0e45e230909a73cd SHA1 e94b2b237bd541fa1e9ccfd44ce303b4d29efee0 SHA256 ed4065c0dd146c683a3c9a21e3f021d3764696faa99abd43919ebd16d8fb9bed
-MD5 0e05d376f3eda22acfb6a6f17cda96a7 metadata.xml 272
-RMD160 c1308e7326e25dcbbd93cebf0e45e230909a73cd metadata.xml 272
-SHA256 ed4065c0dd146c683a3c9a21e3f021d3764696faa99abd43919ebd16d8fb9bed metadata.xml 272
-MD5 fc25d723ec51e68793ef3f32ec9bb8b0 files/digest-linsmith-0.99.1 247
-RMD160 1b3a19208f565008a11caab32e6e9418db276066 files/digest-linsmith-0.99.1 247
-SHA256 4c0c5b089914df7a3529efecf2e3dff3e17f051c2c6e5d382202a570c4441f5e files/digest-linsmith-0.99.1 247
diff --git a/sci-electronics/linsmith/files/digest-linsmith-0.99.1 b/sci-electronics/linsmith/files/digest-linsmith-0.99.1
deleted file mode 100644
index 435a11e93..000000000
--- a/sci-electronics/linsmith/files/digest-linsmith-0.99.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 af4f5f04a91caaea6bdef0333175c81d linsmith-0.99.1.tar.gz 949495
-RMD160 abfd52f666bdd41959883160fcd8c16c1f398302 linsmith-0.99.1.tar.gz 949495
-SHA256 5f58d0419f77be3b9f8e308dda3844121f0b6498e9cdd8f91ba72214a780b3b7 linsmith-0.99.1.tar.gz 949495
diff --git a/sci-electronics/linsmith/files/linsmith-datafiles.patch b/sci-electronics/linsmith/files/linsmith-datafiles.patch
deleted file mode 100644
index cae7a2a7c..000000000
--- a/sci-electronics/linsmith/files/linsmith-datafiles.patch
+++ /dev/null
@@ -1,30 +0,0 @@
---- Makefile.am.old 2005-11-03 00:56:51.000000000 -0300
-+++ Makefile.am 2005-11-03 00:57:09.000000000 -0300
-@@ -20,15 +20,6 @@
- fi \
- done \
- fi
-- @$(NORMAL_INSTALL)
-- if test -d $(srcdir)/datafiles; then \
-- $(mkinstalldirs) $(DESTDIR)$(datadir)/$(PACKAGE); \
-- for datafile in $(srcdir)/datafiles/*; do \
-- if test -f $$datafile; then \
-- $(INSTALL_DATA) $$datafile $(DESTDIR)$(datadir)/$(PACKAGE); \
-- fi \
-- done \
-- fi
-
- dist-hook:
- if test -d pixmaps; then \
-@@ -39,11 +30,3 @@
- fi \
- done \
- fi
-- if test -d datafiles; then \
-- mkdir $(distdir)/datafiles; \
-- for datafile in datafiles/*; do \
-- if test -f $$datafile; then \
-- cp -p $$datafile $(distdir)/datafiles; \
-- fi \
-- done \
-- fi
diff --git a/sci-electronics/linsmith/linsmith-0.99.1.ebuild b/sci-electronics/linsmith/linsmith-0.99.1.ebuild
deleted file mode 100644
index a986fa744..000000000
--- a/sci-electronics/linsmith/linsmith-0.99.1.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils
-
-DESCRIPTION="linSmith is a Smith Charting program, mainly designed for educational use"
-HOMEPAGE="http://jcoppens.com/soft/linsmith/index.en.php"
-SRC_URI="mirror://sourceforge/linsmith/${P}.tar.gz"
-
-LICENSE="GPL-2 LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc examples"
-
-DEPEND=">=gnome-base/libgnomeprint-2.10.3
- >=dev-libs/libxml2-2.6.20-r2
- >=gnome-base/libgnomeui-2.10.1"
-RDEPEND=""
-
-src_unpack() {
- unpack ${A}
- cd ${S}
- # This patch is to prevent make install copying
- # the examples in /usr/share/linsmith
- # Now they are cp to the correct location.
- epatch ${FILESDIR}/${PN}-datafiles.patch
-
- einfo "Regenerating autotools files..."
- WANT_AUTOMAKE=1.9 automake || die "automake failed"
-}
-
-src_install() {
- # Delete this file, otherwise it is installed with the pixmaps.
- rm pixmaps/Makefile.am~
-
- make DESTDIR=${D} install || die "make install failed"
-
- insinto "/usr/share/${PN}"
- doins datafiles/conv0809
-
- dodoc AUTHORS NEWS README ChangeLog TODO
- doman doc/linsmith.1
-
- insinto "/usr/share/applications"
- doins linsmith.desktop
- insinto "/usr/share/pixmaps/${PN}"
- doins linsmith_icon.xpm
-
- if use doc; then
- insinto "/usr/share/doc/${PF}"
- doins doc/manual.pdf
- fi
-
- if use examples; then
- insinto "/usr/share/doc/${PF}/examples"
- doins datafiles/*.circ datafiles/*.load
- fi
-}
diff --git a/sci-electronics/linsmith/metadata.xml b/sci-electronics/linsmith/metadata.xml
deleted file mode 100644
index 14a9e8c57..000000000
--- a/sci-electronics/linsmith/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-electronics</herd>
-<maintainer>
- <email> lucas.chiesa@gmail.com </email>
- <name> Lucas Chiesa </name>
-</maintainer>
-</pkgmetadata>
-
diff --git a/sci-electronics/ng-spice-rework/ChangeLog b/sci-electronics/ng-spice-rework/ChangeLog
deleted file mode 100644
index f85054f78..000000000
--- a/sci-electronics/ng-spice-rework/ChangeLog
+++ /dev/null
@@ -1,90 +0,0 @@
-# ChangeLog for sci-electronics/ng-spice-rework
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-electronics/ng-spice-rework/ChangeLog,v 1.14 2006/07/02 15:06:13 calchan Exp $
-
-*ng-spice-rework-17-r2 (04 Aug 2006)
-
- 04 Aug 2006; Lucas Chiesa <lucas.chiesa@gmail.com> ng-spice-rework-17-r2.ebuild:
- Added xspice and X use flag. Added --enable-intnoise to econf. Modified dependencies
- to work with X use flag.
-
- 02 Jul 2006; Denis Dupeyron <calchan@gentoo.org> metadata.xml:
- Adjusted metadata, see bug #138062.
-
-*ng-spice-rework-17-r1 (12 May 2006)
-
- 12 May 2006; Denis Dupeyron <calchan@gentoo.org>
- +ng-spice-rework-17-r1.ebuild:
- Backported fixes and patches from live cvs ebuild.
-
- 12 May 2006; Denis Dupeyron <calchan@gentoo.org>
- ng-spice-rework-9999.ebuild:
- Changed SourceForge.net cvs to new host, bug #133081.
-
-*ng-spice-rework-9999 (10 May 2006)
-
- 10 May 2006; Denis Dupeyron <calchan@gentoo.org>
- +files/ng-spice-rework-com_let.patch,
- +files/ng-spice-rework-numparam.patch,
- +files/ng-spice-rework-pipemode.patch,
- +files/ng-spice-rework-postscript.patch, +ng-spice-rework-9999.ebuild:
- Added live CVS ebuild. Options numparam and dot-global are enabled.
- Additional patches for postscript and 'let' command fixes. Patch enabling
- pipe mode for xcircuit.
-
- 01 Jan 2006; <plasmaroo@gentoo.org> ng-spice-rework-17.ebuild:
- Add debug and readline USE flags; bug #106496.
-
- 28 Dec 2005; <plasmaroo@gentoo.org> ng-spice-rework-17.ebuild:
- Fix #116936.
-
- 06 Nov 2005; <plasmaroo@gentoo.org> ng-spice-rework-17.ebuild:
- Disable tests for ng-spice-rework-17 since the provided suite fails (bug
- #108405).
-
-*ng-spice-rework-17 (01 Oct 2005)
-
- 01 Oct 2005; Olivier Fisette <ribosome@gentoo.org>
- +ng-spice-rework-17.ebuild:
- New version (fixes bug #90616).
-
- 17 May 2005; Michael Hanselmann <hansmi@gentoo.org>
- ng-spice-rework-15.ebuild:
- Stable on ppc.
-
- 25 Mar 2005; <plasmaroo@gentoo.org> -ng-spice-rework-14.ebuild:
- Remove redundant ng-spice-rework-14.
-
- 15 Jan 2005; Jan Brinkmann <luckyduck@gentoo.org> ng-spice-rework-15.ebuild:
- added ~amd64 to KEYWORDS. fixes bug #77716.
-
- 29 Dec 2004; <plasmaroo@gentoo.org> ng-spice-rework-15.ebuild,
- +files/ng-spice-rework-15.gcc-3.4.patch:
- Fixing GCC 3.4 compile issues; bug #75901.
-
-*ng-spice-rework-15 (27 Dec 2004)
-
- 27 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
- +ng-spice-rework-14.ebuild, +ng-spice-rework-15.ebuild:
- Moved from app-sci/ng-spice-rework to sci-electronics/ng-spice-rework.
-
- 13 Sep 2004; <plasmaroo@gentoo.org> ng-spice-rework-15.ebuild:
- Added GNU info INFO-DIR index information; bug #63391.
-
- 05 Jun 2004; David Holm <dholm@gentoo.org> ng-spice-rework-15.ebuild:
- Added to ~ppc.
-
- 19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org>
- ng-spice-rework-14.ebuild, ng-spice-rework-15.ebuild:
- Removing S=... with no effect, adding IUSE.
-
-*ng-spice-rework-15 (01 Feb 2004)
-
- 01 Feb 2004; <plasmaroo@gentoo.org> ng-spice-rework-15.ebuild:
- Version bump.
-
-*ng-spice-rework-14 (28 Nov 2003)
-
- 28 Nov 2003; <plasmaroo@gentoo.org> ng-spice-rework-14.ebuild:
- Initial commit.
-
diff --git a/sci-electronics/ng-spice-rework/Manifest b/sci-electronics/ng-spice-rework/Manifest
deleted file mode 100644
index 8aeaf13bc..000000000
--- a/sci-electronics/ng-spice-rework/Manifest
+++ /dev/null
@@ -1,36 +0,0 @@
-AUX ng-spice-rework-15.gcc-3.4.patch 804 RMD160 d5dff5f8e39d828b6eb189dc6fe84141628c9f43 SHA1 f8e5e6956315959e0016c7252ace1996b720ecdf SHA256 788ab5054992038777aafd2dad2fe9307f9352c7d9600e91dd1aa7e273870a2a
-MD5 c9ab994f230b3c02ffca2d9d02e7d33b files/ng-spice-rework-15.gcc-3.4.patch 804
-RMD160 d5dff5f8e39d828b6eb189dc6fe84141628c9f43 files/ng-spice-rework-15.gcc-3.4.patch 804
-SHA256 788ab5054992038777aafd2dad2fe9307f9352c7d9600e91dd1aa7e273870a2a files/ng-spice-rework-15.gcc-3.4.patch 804
-AUX ng-spice-rework-com_let.patch 504 RMD160 cba8324b3a157936f9014f1d4aabbf8051c4d415 SHA1 14763d9a1bfcf6269b9b5aee36b30dd36a2b2157 SHA256 37b61f085883fe53896c04bbad22c4134dc47ad62697ba5c55674c3d2f6418a8
-MD5 8e6c0b550f83239d57f566eaf99c7e84 files/ng-spice-rework-com_let.patch 504
-RMD160 cba8324b3a157936f9014f1d4aabbf8051c4d415 files/ng-spice-rework-com_let.patch 504
-SHA256 37b61f085883fe53896c04bbad22c4134dc47ad62697ba5c55674c3d2f6418a8 files/ng-spice-rework-com_let.patch 504
-AUX ng-spice-rework-numparam.patch 1335 RMD160 b181c90de971e08c931d03cb14a91263fc7585da SHA1 ce1b75c38e7d2d46472adae70bdf6c85a08c4dc9 SHA256 85d93abd480187e5ab62544b37067ec3910beb4e674c6afe64e901c58cc65be0
-MD5 9c454830eb554090989af6b37825e0ba files/ng-spice-rework-numparam.patch 1335
-RMD160 b181c90de971e08c931d03cb14a91263fc7585da files/ng-spice-rework-numparam.patch 1335
-SHA256 85d93abd480187e5ab62544b37067ec3910beb4e674c6afe64e901c58cc65be0 files/ng-spice-rework-numparam.patch 1335
-AUX ng-spice-rework-pipemode.patch 1462 RMD160 466a50ed92c0c8bd922a5e270ce5cc73097a0ae4 SHA1 7f7362e98a226698c6ce3a93a5c971d4cce54d81 SHA256 6cbe5d9b8ab667e628a2d98242457b864c1951067327da1c1e491a7af25ebb2b
-MD5 e354e1af1ad9d7d634ad8cdeeb284c92 files/ng-spice-rework-pipemode.patch 1462
-RMD160 466a50ed92c0c8bd922a5e270ce5cc73097a0ae4 files/ng-spice-rework-pipemode.patch 1462
-SHA256 6cbe5d9b8ab667e628a2d98242457b864c1951067327da1c1e491a7af25ebb2b files/ng-spice-rework-pipemode.patch 1462
-AUX ng-spice-rework-postscript.patch 2842 RMD160 47c3187efa6f60f30b1c32b39e5a188b0f62d29a SHA1 1fb74659001b079c966d5f0fb5c53e5bc8cf9560 SHA256 ccc80d63df56e7d501437b63918ff68e92f08041685a91b471b74835a7c87604
-MD5 1fd91e68ec6e9ed3a1639bc3e2c04fd0 files/ng-spice-rework-postscript.patch 2842
-RMD160 47c3187efa6f60f30b1c32b39e5a188b0f62d29a files/ng-spice-rework-postscript.patch 2842
-SHA256 ccc80d63df56e7d501437b63918ff68e92f08041685a91b471b74835a7c87604 files/ng-spice-rework-postscript.patch 2842
-DIST ng-spice-rework-17.tar.gz 5919637 RMD160 2345cbdb608bfb182d33c1a6497408b22acffb77 SHA1 5ce17a6dff309fae069e0b1e7309eb1c16b4671b SHA256 58ec02a0ab48369724c9e98f9a6aa3e0f400ae7b361ba194f4bf06d1420f4496
-EBUILD ng-spice-rework-17-r2.ebuild 1773 RMD160 f608eb10bdf1ff53ddaa40be15eb897b82674d4c SHA1 37773d217f14aad61d802613990f950ac5a07e61 SHA256 f84c1a755ffc5636dc022f8a0ffd569a4965167b0e686683575471d5b984bbba
-MD5 404f91fcea4ea69d0b7a6e71858fc102 ng-spice-rework-17-r2.ebuild 1773
-RMD160 f608eb10bdf1ff53ddaa40be15eb897b82674d4c ng-spice-rework-17-r2.ebuild 1773
-SHA256 f84c1a755ffc5636dc022f8a0ffd569a4965167b0e686683575471d5b984bbba ng-spice-rework-17-r2.ebuild 1773
-MISC ChangeLog 3177 RMD160 0c895341dadfc2165a436842a02a221d3bc1d7eb SHA1 5267551225ddea7eda8d75bde11d496895ef6d47 SHA256 015e8c98a59ef0f2e9b0823c324f291cdf5a70075e1f9f574c33c4e8a0ddaa60
-MD5 f3bcd346c11793c34c36be392076450d ChangeLog 3177
-RMD160 0c895341dadfc2165a436842a02a221d3bc1d7eb ChangeLog 3177
-SHA256 015e8c98a59ef0f2e9b0823c324f291cdf5a70075e1f9f574c33c4e8a0ddaa60 ChangeLog 3177
-MISC metadata.xml 361 RMD160 6a0aea151a531b83b4df35307363793de698bc16 SHA1 3e5c1bc6ec70c652533c17535a248e06577be702 SHA256 0cb29147232be6569c365b9e694962c7b606a81ce4c4ce7b404a937378a1d0b8
-MD5 921fcc44ad34d71c06a40e571dcf2d86 metadata.xml 361
-RMD160 6a0aea151a531b83b4df35307363793de698bc16 metadata.xml 361
-SHA256 0cb29147232be6569c365b9e694962c7b606a81ce4c4ce7b404a937378a1d0b8 metadata.xml 361
-MD5 3ae6317642f0e94a7abced651296d868 files/digest-ng-spice-rework-17-r2 259
-RMD160 076219722d64354cee58fda4b3c83d5c4902b1e2 files/digest-ng-spice-rework-17-r2 259
-SHA256 b0c80b0c2fd1c736600c67d593954cd2312944139ae0d6f4f00b3a08529c4f79 files/digest-ng-spice-rework-17-r2 259
diff --git a/sci-electronics/ng-spice-rework/files/digest-ng-spice-rework-17-r2 b/sci-electronics/ng-spice-rework/files/digest-ng-spice-rework-17-r2
deleted file mode 100644
index 6f72fd102..000000000
--- a/sci-electronics/ng-spice-rework/files/digest-ng-spice-rework-17-r2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 abe283dea98b913a2122f085076865b1 ng-spice-rework-17.tar.gz 5919637
-RMD160 2345cbdb608bfb182d33c1a6497408b22acffb77 ng-spice-rework-17.tar.gz 5919637
-SHA256 58ec02a0ab48369724c9e98f9a6aa3e0f400ae7b361ba194f4bf06d1420f4496 ng-spice-rework-17.tar.gz 5919637
diff --git a/sci-electronics/ng-spice-rework/files/ng-spice-rework-15.gcc-3.4.patch b/sci-electronics/ng-spice-rework/files/ng-spice-rework-15.gcc-3.4.patch
deleted file mode 100644
index cd9f6ba49..000000000
--- a/sci-electronics/ng-spice-rework/files/ng-spice-rework-15.gcc-3.4.patch
+++ /dev/null
@@ -1,37 +0,0 @@
---- src/frontend/control.c.old 2004-12-29 13:53:16.012519944 +0000
-+++ src/frontend/control.c 2004-12-29 13:53:17.683265952 +0000
-@@ -818,6 +818,17 @@
- return (0); /* va: which value? */
- }
-
-+/* va: This totally frees the control structures */
-+void cp_free_control(void)
-+{
-+ int i;
-+
-+ for (i=stackp; i>=0; i--) ctl_free(control[i]);
-+
-+ control[0] = cend[0] = NULL;
-+ stackp = 0;
-+}
-+
- /* This blows away the control structures... */
- void
- cp_resetcontrol(void)
-@@ -878,16 +889,3 @@
- cend[stackp] = cend[stackp]->co_parent;
- return;
- }
--
--
--/* va: This totally frees the control structures */
--void cp_free_control(void)
--{
-- int i;
--
-- for (i=stackp; i>=0; i--) ctl_free(control[i]);
--
-- control[0] = cend[0] = NULL;
-- stackp = 0;
--}
--
diff --git a/sci-electronics/ng-spice-rework/files/ng-spice-rework-com_let.patch b/sci-electronics/ng-spice-rework/files/ng-spice-rework-com_let.patch
deleted file mode 100644
index 2fc7626e1..000000000
--- a/sci-electronics/ng-spice-rework/files/ng-spice-rework-com_let.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Nadurp ng-spice-rework-17/src/frontend/com_let.c ng-spice-rework-17-r1/src/frontend/com_let.c
---- ng-spice-rework-17/src/frontend/com_let.c 2003-12-25 18:30:50.000000000 +0100
-+++ ng-spice-rework-17-r1/src/frontend/com_let.c 2006-05-06 23:14:10.000000000 +0200
-@@ -156,7 +156,7 @@ com_let(wordlist *wl)
- n->v_flags = (t->v_flags | VF_PERMANENT);
- n->v_length = t->v_length;
-
-- if (!t->v_numdims) {
-+ if ((!t->v_numdims)<=1) {
- n->v_numdims = 1;
- n->v_dims[0] = n->v_length;
- } else {
diff --git a/sci-electronics/ng-spice-rework/files/ng-spice-rework-numparam.patch b/sci-electronics/ng-spice-rework/files/ng-spice-rework-numparam.patch
deleted file mode 100644
index 744f23557..000000000
--- a/sci-electronics/ng-spice-rework/files/ng-spice-rework-numparam.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-diff -Nadurp ng-spice-rework-17/src/frontend/numparam/general.h ng-spice-rework-17-r1/src/frontend/numparam/general.h
---- ng-spice-rework-17/src/frontend/numparam/general.h 2005-04-24 23:18:02.000000000 +0200
-+++ ng-spice-rework-17-r1/src/frontend/numparam/general.h 2006-05-06 23:07:39.000000000 +0200
-@@ -136,7 +136,7 @@ Type(Pchar, char AT)
- #define Str(n,a) char a[n+3]={0,0,(char)n} /* n<255 ! */
- #define Sini(s) sini(s,sizeof(s)-4)
-
--Cconst(Maxstr,2004) /* was 255, string maxlen, may be up to 32000 or so */
-+Cconst(Maxstr,32004) /* was 255, string maxlen, may be up to 32000 or so */
-
- typedef char string[258];
-
-diff -Nadurp ng-spice-rework-17/src/frontend/numparam/numparam.h ng-spice-rework-17-r1/src/frontend/numparam/numparam.h
---- ng-spice-rework-17/src/frontend/numparam/numparam.h 2005-05-29 03:18:20.000000000 +0200
-+++ ng-spice-rework-17-r1/src/frontend/numparam/numparam.h 2006-05-06 23:06:37.000000000 +0200
-@@ -28,8 +28,8 @@ Cconst(Llen,1000)
- typedef char str20 [24];
- typedef char str80 [84];
-
--Cconst(Maxline, 1000) /* size of initial unexpanded circuit code */
--Cconst(Maxckt, 5000) /* size of expanded circuit code */
-+Cconst(Maxline, 10000) /* size of initial unexpanded circuit code */
-+Cconst(Maxckt, 30000) /* size of expanded circuit code */
-
-
- typedef Pchar auxtable; /* dummy */
diff --git a/sci-electronics/ng-spice-rework/files/ng-spice-rework-pipemode.patch b/sci-electronics/ng-spice-rework/files/ng-spice-rework-pipemode.patch
deleted file mode 100644
index 871355f6c..000000000
--- a/sci-electronics/ng-spice-rework/files/ng-spice-rework-pipemode.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-diff -Nadurp ng-spice-rework-17/src/main.c ng-spice-rework-17-r1/src/main.c
---- ng-spice-rework-17/src/main.c 2005-05-31 18:47:48.000000000 +0200
-+++ ng-spice-rework-17-r1/src/main.c 2006-05-09 10:24:47.000000000 +0200
-@@ -516,6 +516,7 @@ show_help(void)
- " -i, --interactive run in interactive mode\n"
- " -n, --no-spiceinit don't load the local or user's config file\n"
- " -o, --output=FILE set the outputfile\n"
-+ " -p, --pipe run in I/O pipe mode\n"
- " -q, --completion activate command completion\n"
- " -r, --rawfile=FILE set the rawfile output\n"
- " -s, --server run spice as a server process\n"
-@@ -738,6 +739,7 @@ main(int argc, char **argv)
- {"interactive", 0, 0, 'i'},
- {"no-spiceinit", 0, 0, 'n'},
- {"output", 0, 0, 'o'},
-+ {"pipe", 0, 0, 'p'},
- {"completion", 0, 0, 'q'},
- {"rawfile", 1, 0, 'r'},
- {"server", 0, 0, 's'},
-@@ -745,7 +747,7 @@ main(int argc, char **argv)
- {0, 0, 0, 0}
- };
-
-- c = getopt_long (argc, argv, "hvbc:ihno:qr:st:",
-+ c = getopt_long (argc, argv, "hvbc:ihno:pqr:st:",
- long_options, &option_index);
- if (c == -1)
- break;
-@@ -779,6 +781,11 @@ main(int argc, char **argv)
- iflag = TRUE;
- break;
-
-+ case 'p': /* Pipe mode */
-+ iflag = TRUE;
-+ istty = TRUE;
-+ break;
-+
- case 'n': /* Don't read initialisation file */
- readinit = FALSE;
- break;
diff --git a/sci-electronics/ng-spice-rework/files/ng-spice-rework-postscript.patch b/sci-electronics/ng-spice-rework/files/ng-spice-rework-postscript.patch
deleted file mode 100644
index e9e1a67e4..000000000
--- a/sci-electronics/ng-spice-rework/files/ng-spice-rework-postscript.patch
+++ /dev/null
@@ -1,79 +0,0 @@
-diff -Nadurp ng-spice-rework-17/src/frontend/postsc.c ng-spice-rework-17-r1/src/frontend/postsc.c
---- ng-spice-rework-17/src/frontend/postsc.c 2005-05-30 22:28:30.000000000 +0200
-+++ ng-spice-rework-17-r1/src/frontend/postsc.c 2006-05-04 09:44:06.000000000 +0200
-@@ -88,14 +88,13 @@ PS_Init(void)
- scale = 1.0;
- }
-
-+ dispdev->numlinestyles = NUMELEMS(linestyle);
- if (!cp_getvar("hcopypscolor", VT_STRING, pscolor)) {
- colorflag = 0;
- dispdev->numcolors = 2;
-- dispdev->numlinestyles = NUMELEMS(linestyle);
- } else {
- colorflag = 1;
- dispdev->numcolors = 18; /* don't know what the maximum should be */
-- dispdev->numlinestyles = 1;
- }
- pscolor[0]='\0';
-
-@@ -118,6 +117,10 @@ PS_Init(void)
- dispdev->height = 10000;
- }
-
-+ dispdev->width *= 1000;
-+ dispdev->height *= 1000;
-+ scale *= 1000.0;
-+
- /* The following side effects have to be considered
- * when the printer is called by com_hardcopy !
- * gr_init:
-@@ -160,6 +163,7 @@ PS_NewViewport(GRAPH *graph)
- {
- int x1,x2,y1,y2;
- hcopygraphid = graph->graphid;
-+ bool nobg;
-
- if (!(plotfile = fopen(graph->devdep, "w"))) {
- perror(graph->devdep);
-@@ -180,29 +184,33 @@ PS_NewViewport(GRAPH *graph)
- graph->absolute.width = dispdev->width;
- graph->absolute.height = dispdev->height;
- /* Also done in gr_init, if called . . . */
-- graph->viewportxoff = 8 * fontwidth;
-- graph->viewportyoff = 4 * fontheight;
-+ graph->viewportxoff = 8 * graph->fontwidth;
-+ graph->viewportyoff = 4 * graph->fontheight;
-
- xoff = scale * XOFF;
- yoff = scale * YOFF;
-
- x1 = 0.75 * 72;
- y1 = x1;
-- x2 = graph->absolute.width + .75 * 72;
-- y2 = graph->absolute.height + .75 * 72;
-+ x2 = graph->absolute.width / 1000 + 0.75 * 72;
-+ y2 = graph->absolute.height / 1000 + 0.75 * 72;
- /* start file off with a % */
- fprintf(plotfile, "%%!PS-Adobe-3.0 EPSF-3.0\n");
- fprintf(plotfile, "%%%%Creator: nutmeg\n");
- fprintf(plotfile, "%%%%BoundingBox: %d %d %d %d\n",x1,y1,x2,y2);
-
- fprintf(plotfile, "%g %g scale\n", 1.0 / scale, 1.0 / scale);
-+ fprintf(plotfile, "1000 setlinewidth\n");
-
-- if (colorflag == 1){ /* set the background to color0 */
-+ cp_getvar("hcopypsnobg", VT_BOOL, &nobg);
-+ if (!nobg && colorflag == 1){ /* set the background to color0 */
- PS_SelectColor(0);
- fprintf(plotfile,"%s setrgbcolor\n",pscolor);
- fprintf(plotfile,"newpath\n");
-- fprintf(plotfile,"%d %d moveto %d %d lineto\n",x1,y1,x2,y1);
-- fprintf(plotfile,"%d %d lineto %d %d lineto\n",x2,y2,x1,y2);
-+ fprintf(plotfile,"%d %d moveto %d %d lineto\n",
-+ x1*1000,y1*1000,x2*1000,y1*1000);
-+ fprintf(plotfile,"%d %d lineto %d %d lineto\n",
-+ x2*1000,y2*1000,x1*1000,y2*1000);
- fprintf(plotfile,"closepath fill\n");
- }
-
diff --git a/sci-electronics/ng-spice-rework/metadata.xml b/sci-electronics/ng-spice-rework/metadata.xml
deleted file mode 100644
index 97cd3908e..000000000
--- a/sci-electronics/ng-spice-rework/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-electronics</herd>
- <longdescription>
- Ngspice is a mixed-level/mixed-signal circuit simulator. Its code is based on
- three open source software packages: Spice3f5, Cider1b1 and Xspice.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-electronics/ng-spice-rework/ng-spice-rework-17-r2.ebuild b/sci-electronics/ng-spice-rework/ng-spice-rework-17-r2.ebuild
deleted file mode 100644
index faf0db346..000000000
--- a/sci-electronics/ng-spice-rework/ng-spice-rework-17-r2.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-electronics/ng-spice-rework/ng-spice-rework-17-r1.ebuild,v 1.1 2006/05/12 20:49:03 calchan Exp $
-
-inherit eutils
-
-DESCRIPTION="The Next Generation Spice (Electronic Circuit Simulator)."
-SRC_URI="mirror://sourceforge/ngspice/${P}.tar.gz"
-HOMEPAGE="http://ngspice.sourceforge.net"
-LICENSE="BSD GPL-2"
-
-SLOT="0"
-IUSE="readline debug xspice X"
-KEYWORDS="~amd64 ~ppc ~x86"
-
-RDEPEND="X? ( || ( (x11-libs/libXaw
- x11-libs/libX11
- )
- virtual/X11
- ))
- readline? ( >=sys-libs/readline-5.0 )"
-
-DEPEND="${RDEPEND}
- X? ( || ( (x11-proto/xproto
- )
- virtual/X11
- ))"
-
-src_unpack() {
- unpack ${A}
- cd ${S}
- epatch ${FILESDIR}/${PN}-com_let.patch
- epatch ${FILESDIR}/${PN}-numparam.patch
- epatch ${FILESDIR}/${PN}-pipemode.patch
- epatch ${FILESDIR}/${PN}-postscript.patch
-}
-
-src_compile() {
- econf \
- --enable-numparam \
- --enable-dot-global \
- --enable-intnoise \
- --disable-dependency-tracking \
- $(use_with debug) \
- $(use_with readline) \
- $(use_with X) \
- $(use_enable xspice) || die "econf failed"
- emake || die "emake failed"
-}
-
-src_install () {
- local infoFile
- for infoFile in doc/ngspice.info*; do
- echo 'INFO-DIR-SECTION EDA' >> ${infoFile}
- echo 'START-INFO-DIR-ENTRY' >> ${infoFile}
- echo '* NGSPICE: (ngspice). Electronic Circuit Simulator.' >> ${infoFile}
- echo 'END-INFO-DIR-ENTRY' >> ${infoFile}
- done
-
- make DESTDIR="${D}" install || die "make install failed"
- dodoc ANALYSES AUTHORS BUGS ChangeLog DEVICES NEWS \
- README Stuarts_Poly_Notes || die "failed to install documentation"
-
- # We don't need makeidx to be installed
- rm ${D}/usr/bin/makeidx
-}
-
-src_test () {
- # Bug 108405
- true
-}
diff --git a/sci-libs/acml/Manifest b/sci-libs/acml/Manifest
deleted file mode 100644
index 3fdd6082e..000000000
--- a/sci-libs/acml/Manifest
+++ /dev/null
@@ -1,29 +0,0 @@
-AUX blas.pc.in 277 RMD160 8cb47efd4dde249c1167474349f5dfd627cf0db8 SHA1 528846352226a1f2543a7562370a60110c958252 SHA256 36cef41ee7bede42836c6d9b4d8d95ee95270f238ed52994440565741e0db129
-MD5 f00b2103879c1f4c8f85533e2b20d80f files/blas.pc.in 277
-RMD160 8cb47efd4dde249c1167474349f5dfd627cf0db8 files/blas.pc.in 277
-SHA256 36cef41ee7bede42836c6d9b4d8d95ee95270f238ed52994440565741e0db129 files/blas.pc.in 277
-AUX lapack.pc.in 274 RMD160 7d97022fffe23c7b1215de1555851a4057efebe2 SHA1 b6b1c19d6c5fe734bb40877c23f33134838a7f6e SHA256 0a0d676a89f34710c8955178440f5f72114adaa8ec9d73d067f43480360c443a
-MD5 bcc3002846ea0acf7d199f861d83b1d1 files/lapack.pc.in 274
-RMD160 7d97022fffe23c7b1215de1555851a4057efebe2 files/lapack.pc.in 274
-SHA256 0a0d676a89f34710c8955178440f5f72114adaa8ec9d73d067f43480360c443a files/lapack.pc.in 274
-DIST acml-3-6-0-gnu-32bit.tgz 9879145 RMD160 bafa6acd1d8a319fb385245559779450c7bdcd66 SHA1 7dad2ce9fb99572da79e127c711aabe29a888298 SHA256 81ee83babf134bc021e5e64983200abf815531ee20ecc5ecc97a30bbdb5cf6dd
-DIST acml-3-6-0-gnu-64bit.tgz 11101900 RMD160 f6d674a4fbf99e79109bb379d1ba5dbaf88ce010 SHA1 6f5aab32f396ac9cf99a9c142d89f0b835cb54f0 SHA256 240cd40c9f9c993c15ec113278faf8689713b45b7626da2d0c369024bec97c03
-DIST acml-3-6-0-ifort-32bit.tgz 17399749 RMD160 c41ebe1b62470858d176c5815e05893ba4caf4ad SHA1 87254fc12032ea9ea49822e00300774d8cda73b8 SHA256 1585df79ced4ecd6fdcbb59b36e2686b61d6faf7b755d5ac5a267eddeff36340
-DIST acml-3-6-0-ifort-64bit.tgz 21966276 RMD160 a6031f5cdacdc70d11c06cf6d8e8ae3149eff55f SHA1 094eb839d6a84ac5483588e965000862ae7ce40c SHA256 bdfb47a5f018d1bcca257b9223f176726663596ae0e8337dc295a312f8382950
-DIST acml-3-6-1-gfortran-32bit.tgz 17682562 RMD160 abdb8ea2f66f08f478a951b37c5ce5945854a357 SHA1 7606b690061319c50f30af11766694205b03922f SHA256 adec95c65d1042c65fa1490978b76042c3bf9670df7c226cd28431473985898c
-DIST acml-3-6-1-gfortran-64bit-int64.tgz 19802195 RMD160 3cb2317d6a5ec62797c4a11ab1336aabb50e16fa SHA1 a9be2f4ecbfdb6e0f849f545b66e78f752367f00 SHA256 56cbbb6deac2a93d21f3954511ad95ccc2a8ce893fdbf9a8605a2d81deb1fc41
-DIST acml-3-6-1-gfortran-64bit.tgz 20452058 RMD160 8df00704e7ac037dcd55a9207f45d6f0b2214ff8 SHA1 f0d2a10e5db83dc264d6f937189ce10a1f461a4d SHA256 efec543a8185ffb6e6e68db94ef0cbd92c1b9ee1580affe6cd0a73c580ad8bdc
-EBUILD acml-3.6.0-r1.ebuild 3942 RMD160 b029485d7230d4995b65e86bdca29508f96ec934 SHA1 1000c66d0a7e07d560708176481d3d504d78abae SHA256 0d68037cc5c0be70e1fb1a9a700e71e1fa29673a0a25cf6f6a9c210333ae04f9
-MD5 a91c81516a71325e5752bce83f30b693 acml-3.6.0-r1.ebuild 3942
-RMD160 b029485d7230d4995b65e86bdca29508f96ec934 acml-3.6.0-r1.ebuild 3942
-SHA256 0d68037cc5c0be70e1fb1a9a700e71e1fa29673a0a25cf6f6a9c210333ae04f9 acml-3.6.0-r1.ebuild 3942
-EBUILD acml-3.6.1-r1.ebuild 4800 RMD160 5a1ecbbd23e6e35050c05b45c1c4f3e3f760ae92 SHA1 45b3590c0130a6b05662feb52d74abab3d7bfb29 SHA256 248310b9b53178cc54c977ccf3a0e3c3b753b5fbc758f49ea5778ee5240fcf99
-MD5 32143a27766bc1b0174eb6996b2751bd acml-3.6.1-r1.ebuild 4800
-RMD160 5a1ecbbd23e6e35050c05b45c1c4f3e3f760ae92 acml-3.6.1-r1.ebuild 4800
-SHA256 248310b9b53178cc54c977ccf3a0e3c3b753b5fbc758f49ea5778ee5240fcf99 acml-3.6.1-r1.ebuild 4800
-MD5 0825c9a4d803ec3e005d86b883c72998 files/digest-acml-3.6.0-r1 1045
-RMD160 574657f2c6a1f3697428f9522c5d67fa18ce5193 files/digest-acml-3.6.0-r1 1045
-SHA256 47bd4eee1e3dfc0f1b508ce5a41054c23089bb9b9d7add427abcdc24942a1887 files/digest-acml-3.6.0-r1 1045
-MD5 f822ee466ea41e1f6900d64b52a495c6 files/digest-acml-3.6.1-r1 840
-RMD160 47a3138d09b475dcfe429b1ac3fc9c8a31bee749 files/digest-acml-3.6.1-r1 840
-SHA256 b1ab60561ac029d5f444f7c4b5c7c7dc1793f89ae5ec1b20baa7d4bfdb10a025 files/digest-acml-3.6.1-r1 840
diff --git a/sci-libs/acml/acml-3.6.0-r1.ebuild b/sci-libs/acml/acml-3.6.0-r1.ebuild
deleted file mode 100644
index cf96e69d7..000000000
--- a/sci-libs/acml/acml-3.6.0-r1.ebuild
+++ /dev/null
@@ -1,151 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs fortran
-
-DESCRIPTION="AMD Core Math Library (ACML) for x86 and amd64 CPUs"
-HOMEPAGE="http://developer.amd.com/acml.jsp"
-
-MY_PV=${PV//\./\-}
-S=${WORKDIR}
-
-IUSE="openmp ifc doc examples"
-KEYWORDS="~amd64 ~x86"
-
-SRC_URI="amd64? ( ifc? ( acml-${MY_PV}-ifort-64bit.tgz )
- !ifc? ( openmp? ( acml-${MY_PV}-ifort-64bit.tgz )
- !openmp? ( acml-${MY_PV}-gnu-64bit.tgz ) )
- openmp? ( acml-${MY_PV}-ifort-64bit.tgz ) )
- x86? ( ifc? ( acml-${MY_PV}-ifort-32bit.tgz )
- !ifc? ( openmp? ( acml-${MY_PV}-ifort-32bit.tgz )
- !openmp? ( acml-${MY_PV}-gnu-32bit.tgz ) )
- openmp? ( acml-${MY_PV}-ifort-32bit.tgz ) )"
-
-RESTRICT="strip fetch"
-LICENSE="ACML"
-SLOT="0"
-
-DEPEND="app-admin/eselect-blas
- app-admin/eselect-lapack"
-
-RDEPEND="${DEPEND}
- openmp? ( >=dev-lang/ifc-9 )
- doc? ( app-doc/blas-docs app-doc/lapack-docs )"
-
-pkg_nofetch() {
- einfo "Please download the ACML from:"
- einfo "${HOMEPAGE}"
- einfo "and place it in ${DISTDIR}."
- einfo "The previous versions could be found at"
- einfo "http://developer.amd.com/acmlarchive.jsp"
- einfo "SRC=${A} $SRC_URI"
-}
-
-pkg_setup() {
- elog "From version 3.5.0 on, ACML no longer supports"
- elog "hardware without SSE/SSE2 instructions. "
- elog "For older 32-bit hardware that does not support SSE/SSE2,"
- elog "you must continue to use an older version (ACML 3.1.0 and ealier)."
- epause
- FORTRAN=ifc
- FORT=ifort
- ! use ifc && ! use openmp && FORTRAN=g77 && FORT=gnu
- fortran_pkg_setup
-}
-
-src_unpack() {
- unpack ${A}
- (DISTDIR="${S}" unpack contents-acml-*.tgz)
- use openmp || rm -rf ${FORT}*_mp*
- FORTDIRS="$(ls -d ${FORT}*)"
-}
-
-src_compile() {
- einfo "Nothing to compile"
- return
-}
-
-src_test() {
- for fort in ${FORTDIRS}; do
- einfo "Testing acml for $(basename ${fort})"
- cd "${S}/${fort}/examples"
- for d in . acml_mv; do
- cd "${S}/${fort}/examples/${d}"
- emake \
- ACMLDIR="${S}/${fort}" \
- F77="${FORTRANC}" \
- CC="$(tc-getCC)" \
- CPLUSPLUS="$(tc-getCXX)" \
- || die "emake test in ${fort}/examples/${d} failed"
- emake clean
- done
- done
-}
-
-src_install() {
- # respect acml default install dir (and FHS)
- local instdir="/opt/${PN}${PV}"
- dodir ${instdir}
-
- for fort in ${FORTDIRS}; do
- # install acml
- use examples || rm -rf "${S}/${fort}"/examples
- cp -pPR "${S}/${fort}" "${D}${instdir}"
-
- # install profiles
- local acmldir=${instdir}/${fort}
- local libname=${acmldir}/lib/libacml
- local prof=acml-${FORTRANC}
- local extlibs
- local extflags
- if [[ "${fort}" =~ "_mp" ]]; then
- prof="${prof}-openmp"
- extlibs="-lpthread"
- libname="${libname}_mp"
- extflags="${extflags} -openmp"
- fi
- for l in blas lapack; do
- # pkgconfig files
- sed -e "s:@LIBDIR@:$(get_libdir):" \
- -e "s:@PV@:${PV}:" \
- -e "s:@ACMLDIR@:${acmldir}:g" \
- -e "s:@EXTLIBS@:${extlibs}:g" \
- -e "s:@EXTFLAGS@:${extflags}:g" \
- "${FILESDIR}"/${l}.pc.in > ${l}.pc \
- || die "sed ${l}.pc failed"
- insinto ${acmldir}/lib
- doins ${l}.pc
-
- # eselect files
- cat > eselect.${l} << EOF
-${libname}.so /usr/@LIBDIR@/lib${l}.so.0
-${libname}.so /usr/@LIBDIR@/lib${l}.so
-${libname}.a /usr/@LIBDIR@/lib${l}.a
-${acmldir}/lib/${l}.pc /usr/@LIBDIR@/pkgconfig/${l}.pc
-EOF
- eselect ${l} add $(get_libdir) eselect.${l} ${prof}
- done
- echo "LDPATH=${instdir}/${fort}/lib" > 35acml
- echo "INCLUDE=${instdir}/${fort}/include" >> 35acml
- done
-
- # paths
- doenvd 35acml
-
- use doc || rm -rf "${S}"/Doc/acml.pdf "${S}"/Doc/html
- cp -pPR "${S}"/Doc "${D}${instdir}"
-}
-
-pkg_postinst() {
- # set acml if none are set yet
- for l in blas lapack; do
- if [[ -z "$(eselect ${l} show)" ]]; then
- local prof=acml-${FORTRANC}
- use openmp && prof="${prof}-openmp"
- eselect ${l} set ${prof}
- fi
- done
- elog "Use 'eselect blas' and 'eselect lapack' to select"
- elog "one of the multiple acml blas and lapack profiles"
-}
diff --git a/sci-libs/acml/acml-3.6.1-r1.ebuild b/sci-libs/acml/acml-3.6.1-r1.ebuild
deleted file mode 100644
index 48e226d9f..000000000
--- a/sci-libs/acml/acml-3.6.1-r1.ebuild
+++ /dev/null
@@ -1,176 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs fortran
-
-DESCRIPTION="AMD Core Math Library (ACML) for x86 and amd64 CPUs"
-HOMEPAGE="http://developer.amd.com/acml.jsp"
-
-MY_PV=${PV//\./\-}
-S=${WORKDIR}
-SRC_URI="x86? ( acml-${MY_PV}-gfortran-32bit.tgz )
- amd64? ( ( acml-${MY_PV}-gfortran-64bit.tgz )
- int64? ( acml-${MY_PV}-gfortran-64bit-int64.tgz ) )"
-
-
-RESTRICT="strip fetch"
-IUSE="openmp int64 test doc examples"
-LICENSE="ACML"
-KEYWORDS="~amd64 ~x86"
-SLOT="0"
-
-# proper gcc needed for tests
-DEPEND="app-admin/eselect-blas
- openmp? ( test? ( >=sys-devel/gcc-4.2 ) )
- !openmp? ( test? ( =sys-devel/gcc-4.1* ) )
- app-admin/eselect-lapack"
-
-RDEPEND="${DEPEND}
- openmp? ( >=sys-devel/gcc-4.2 )
- !openmp? ( =sys-devel/gcc-4.1* )
- doc? ( app-doc/blas-docs app-doc/lapack-docs )"
-
-pkg_nofetch() {
- einfo "Please download the ACML from:"
- einfo "${HOMEPAGE}"
- einfo "and place it in ${DISTDIR}"
- einfo "The previous versions could be found at"
- einfo "http://developer.amd.com/acmlarchive.jsp"
-}
-
-pkg_setup() {
- elog "From version 3.5.0 on, ACML no longer supports"
- elog "hardware without SSE/SSE2 instructions. "
- elog "For older 32-bit hardware that does not support SSE/SSE2,"
- elog "you must continue to use an older version (ACML 3.1.0 and ealier)."
- epause
- FORTRAN="gfortran"
- fortran_pkg_setup
- if use test; then
- if ! use openmp && [[ $(gcc-version) != "4.1" ]]; then
- eerror "You need gcc-4.1.x to test acml."
- eerror "Please use gcc-config to swicth gcc version 4.1.x"
- die "setup gcc failed"
- elif use openmp && [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]]; then
- eerror "You need gfortran >= 4.2 to use openmp features."
- eerror "Please use gcc-config to switch gcc version >= 4.2"
- die "setup gcc failed"
- fi
- fi
-}
-
-src_unpack() {
- unpack ${A}
- (DISTDIR="${S}" unpack contents-acml-*.tgz)
- case ${FORTRANC} in
- g77) FORT=gnu ;;
- gfortran) FORT=gfortran ;;
- ifc|ifort) FORT=ifort ;;
- *) eerror "Unsupported fortran compiler: ${FORTRANC}"
- die ;;
- esac
- use openmp || rm -rf ${FORT}*_mp*
- FORTDIRS="$(ls -d ${FORT}*)"
-}
-
-src_compile() {
- einfo "Nothing to compile"
- return
-}
-
-src_test() {
- local forts=${FORTDIRS}
- # only testing with current compiler
- use openmp && forts="$(ls -d ${FORT}*_mp*)"
- for fort in ${forts}; do
- einfo "Testing acml for ${fort}"
- cd "${S}/${fort}/examples"
- for d in . acml_mv; do
- cd "${S}/${fort}/examples/${d}"
- emake \
- ACMLDIR="${S}/${fort}" \
- F77="${FORTRANC}" \
- CC="$(tc-getCC)" \
- CPLUSPLUS="$(tc-getCXX)" \
- || die "emake test in ${fort}/examples/${d} failed"
- emake clean
- done
- done
-}
-
-src_install() {
- # respect acml default install dir (and FHS)
- local instdir="/opt/${PN}${PV}"
- dodir ${instdir}
-
- for fort in ${FORTDIRS}; do
- # install acml
- use examples || rm -rf "${S}/${fort}"/examples
- cp -pPR "${S}/${fort}" "${D}${instdir}"
-
- # install profiles
- local acmldir=${instdir}/${fort}
- local libname=${acmldir}/lib/libacml
- local prof=acml-${FORTRANC}
- local extlibs
- local extflags
- if [[ "${fort}" =~ "int64" ]]; then
- prof="${prof}-int64"
- extflags="${extflags} -fdefault-integer-8"
- fi
- if [[ "${fort}" =~ "_mp" ]]; then
- prof="${prof}-openmp"
- extlibs="-lpthread"
- libname="${libname}_mp"
- extflags="${extflags} -fopenmp"
- fi
- for l in blas lapack; do
- # pkgconfig files
- sed -e "s:@LIBDIR@:$(get_libdir):" \
- -e "s:@PV@:${PV}:" \
- -e "s:@ACMLDIR@:${acmldir}:g" \
- -e "s:@EXTLIBS@:${extlibs}:g" \
- -e "s:@EXTFLAGS@:${extflags}:g" \
- "${FILESDIR}"/${l}.pc.in > ${l}.pc \
- || die "sed ${l}.pc failed"
- insinto ${acmldir}/lib
- doins ${l}.pc
-
- # eselect files
- cat > eselect.${l} << EOF
-${libname}.so /usr/@LIBDIR@/lib${l}.so.0
-${libname}.so /usr/@LIBDIR@/lib${l}.so
-${libname}.a /usr/@LIBDIR@/lib${l}.a
-${acmldir}/lib/${l}.pc /usr/@LIBDIR@/pkgconfig/${l}.pc
-EOF
-
- eselect ${l} add $(get_libdir) eselect.${l} ${prof}
- done
- echo "LDPATH=${acmldir}/lib" > ${S}/35acml
- echo "INCLUDE=${acmldir}/include" >> ${S}/35acml
- done
- doenvd "${S}"/35acml
- use doc || rm -rf "${S}"/Doc/acml.pdf "${S}"/Doc/html
- cp -pPR "${S}"/Doc "${D}${instdir}"
-}
-
-pkg_postinst() {
- # set acml if none are set yet
- for l in blas lapack; do
- if [[ -z "$(eselect ${l} show)" ]]; then
- local prof=${FORTRANC}
- use int64 && ext="${prof}-int64"
- use openmp && ext="${prof}-openmp"
- eselect ${l} set ${prof}
- fi
- done
- elog "Use 'eselect blas' and 'eselect lapack' to select"
- elog "one of the multiple acml blas and lapack profiles"
- echo
- if use openmp; then
- elog "Remember that if you want to use openmp"
- elog "You need to switch to gcc >= 4.2 with gcc-config"
- elog "When using ACML without openmp, stick with gcc-4.1.x"
- fi
-}
diff --git a/sci-libs/acml/files/blas.pc.in b/sci-libs/acml/files/blas.pc.in
deleted file mode 100644
index fd1d57ffd..000000000
--- a/sci-libs/acml/files/blas.pc.in
+++ /dev/null
@@ -1,11 +0,0 @@
-prefix=/usr
-exec_prefix=${prefix}
-libdir=/usr/@LIBDIR@
-includedir=@ACMLDIR@/include
-
-Name: blas
-Description: ACML implementations of the Basic Linear Algebra Subroutines
-Version: @PV@
-URL: http://developer.amd.com/acml.jsp
-Libs: -L${libdir} -lblas @EXTLIBS@
-Cflags: @EXTFLAGS@
diff --git a/sci-libs/acml/files/digest-acml-3.6.0-r1 b/sci-libs/acml/files/digest-acml-3.6.0-r1
deleted file mode 100644
index 78ad50e56..000000000
--- a/sci-libs/acml/files/digest-acml-3.6.0-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-MD5 544b271fac69f3a5de4859c42962d257 acml-3-6-0-gnu-32bit.tgz 9879145
-RMD160 bafa6acd1d8a319fb385245559779450c7bdcd66 acml-3-6-0-gnu-32bit.tgz 9879145
-SHA256 81ee83babf134bc021e5e64983200abf815531ee20ecc5ecc97a30bbdb5cf6dd acml-3-6-0-gnu-32bit.tgz 9879145
-MD5 cd29b05621cc8af7094bc30e3d8288e3 acml-3-6-0-gnu-64bit.tgz 11101900
-RMD160 f6d674a4fbf99e79109bb379d1ba5dbaf88ce010 acml-3-6-0-gnu-64bit.tgz 11101900
-SHA256 240cd40c9f9c993c15ec113278faf8689713b45b7626da2d0c369024bec97c03 acml-3-6-0-gnu-64bit.tgz 11101900
-MD5 b142edc1cd30cee76262c7df3d6e491c acml-3-6-0-ifort-32bit.tgz 17399749
-RMD160 c41ebe1b62470858d176c5815e05893ba4caf4ad acml-3-6-0-ifort-32bit.tgz 17399749
-SHA256 1585df79ced4ecd6fdcbb59b36e2686b61d6faf7b755d5ac5a267eddeff36340 acml-3-6-0-ifort-32bit.tgz 17399749
-MD5 e887b75ceec837ba9778b3fe18913faa acml-3-6-0-ifort-64bit.tgz 21966276
-RMD160 a6031f5cdacdc70d11c06cf6d8e8ae3149eff55f acml-3-6-0-ifort-64bit.tgz 21966276
-SHA256 bdfb47a5f018d1bcca257b9223f176726663596ae0e8337dc295a312f8382950 acml-3-6-0-ifort-64bit.tgz 21966276
diff --git a/sci-libs/acml/files/digest-acml-3.6.1-r1 b/sci-libs/acml/files/digest-acml-3.6.1-r1
deleted file mode 100644
index 31c6126b2..000000000
--- a/sci-libs/acml/files/digest-acml-3.6.1-r1
+++ /dev/null
@@ -1,9 +0,0 @@
-MD5 3aa80dc1a5fed2ccedceacffcbf22501 acml-3-6-1-gfortran-32bit.tgz 17682562
-RMD160 abdb8ea2f66f08f478a951b37c5ce5945854a357 acml-3-6-1-gfortran-32bit.tgz 17682562
-SHA256 adec95c65d1042c65fa1490978b76042c3bf9670df7c226cd28431473985898c acml-3-6-1-gfortran-32bit.tgz 17682562
-MD5 1eb1958766688332a83e4b9807031495 acml-3-6-1-gfortran-64bit-int64.tgz 19802195
-RMD160 3cb2317d6a5ec62797c4a11ab1336aabb50e16fa acml-3-6-1-gfortran-64bit-int64.tgz 19802195
-SHA256 56cbbb6deac2a93d21f3954511ad95ccc2a8ce893fdbf9a8605a2d81deb1fc41 acml-3-6-1-gfortran-64bit-int64.tgz 19802195
-MD5 f1df8d99221337e5644e85ca790e19c2 acml-3-6-1-gfortran-64bit.tgz 20452058
-RMD160 8df00704e7ac037dcd55a9207f45d6f0b2214ff8 acml-3-6-1-gfortran-64bit.tgz 20452058
-SHA256 efec543a8185ffb6e6e68db94ef0cbd92c1b9ee1580affe6cd0a73c580ad8bdc acml-3-6-1-gfortran-64bit.tgz 20452058
diff --git a/sci-libs/acml/files/lapack.pc.in b/sci-libs/acml/files/lapack.pc.in
deleted file mode 100644
index e312798d8..000000000
--- a/sci-libs/acml/files/lapack.pc.in
+++ /dev/null
@@ -1,11 +0,0 @@
-prefix=/usr
-exec_prefix=${prefix}
-libdir=/usr/@LIBDIR@
-includedir=@ACMLDIR@/include
-
-Name: lapack
-Description: ACML implementation of the F77 Linear Algebra PACKage
-Version: @PV@
-URL: http://developer.amd.com/acml.jsp
-Libs: -L${libdir} -llapack @EXTLIBS@
-Cflags: @EXTFLAGS@
diff --git a/sci-libs/blas-atlas/Manifest b/sci-libs/blas-atlas/Manifest
deleted file mode 100644
index f1bc79dd7..000000000
--- a/sci-libs/blas-atlas/Manifest
+++ /dev/null
@@ -1,48 +0,0 @@
-AUX atlas-3.7.37-shared-libs.patch 50209 RMD160 aa9b112aee0819c85a67729dafd6c5b306966db9 SHA1 dd88d38a41b5413d9a9ec40b3456e8284c0d4a5f SHA256 1c34034f1342efb38c63485efa67e056b8e3268259d81fd0f089341e34f7309a
-MD5 535722fdc28d77fd14f922ec57d7fa76 files/atlas-3.7.37-shared-libs.patch 50209
-RMD160 aa9b112aee0819c85a67729dafd6c5b306966db9 files/atlas-3.7.37-shared-libs.patch 50209
-SHA256 1c34034f1342efb38c63485efa67e056b8e3268259d81fd0f089341e34f7309a files/atlas-3.7.37-shared-libs.patch 50209
-AUX atlas-asm-gentoo.patch 408 RMD160 3cea2f4a5a96ec22a4d0cfc78d691198a2d1a0da SHA1 493d066be68c66cca1f0c906d588da8983ec7afa SHA256 00f9247d422c758ef8ff43446a36a6dbb7962f94e5d01307318c87a90a78355b
-MD5 fb9ca923b595b67967a744339e7a32a6 files/atlas-asm-gentoo.patch 408
-RMD160 3cea2f4a5a96ec22a4d0cfc78d691198a2d1a0da files/atlas-asm-gentoo.patch 408
-SHA256 00f9247d422c758ef8ff43446a36a6dbb7962f94e5d01307318c87a90a78355b files/atlas-asm-gentoo.patch 408
-AUX blas.pc.in 301 RMD160 e82627c38aa09c8eb2581a4dd8a38c1670ed6098 SHA1 e8c80353ba72bee2848767b70f7575b723b84f15 SHA256 cb993e61b03514c4c69fac43540e45e759cf57635e2a8d6900118543d06ff433
-MD5 b3e049b36e34287f6482a9122dccd604 files/blas.pc.in 301
-RMD160 e82627c38aa09c8eb2581a4dd8a38c1670ed6098 files/blas.pc.in 301
-SHA256 cb993e61b03514c4c69fac43540e45e759cf57635e2a8d6900118543d06ff433 files/blas.pc.in 301
-AUX cblas.pc.in 312 RMD160 a4a66d41736ba1c5fb669c8a96c48f952fb7fcf5 SHA1 85b24f0257e79e8adc8abea3e1117809cc6cf253 SHA256 df3a0733085883397c37fa273d239b0e8c9d875521383f581fdf473013c3b5c3
-MD5 eef01fd3138262258bae911fd6921837 files/cblas.pc.in 312
-RMD160 a4a66d41736ba1c5fb669c8a96c48f952fb7fcf5 files/cblas.pc.in 312
-SHA256 df3a0733085883397c37fa273d239b0e8c9d875521383f581fdf473013c3b5c3 files/cblas.pc.in 312
-AUX eselect.blas.atlas 197 RMD160 fc69bacf24979485653a2d61298fdbf21464c089 SHA1 68de5da171fdd3e0ff5a7773b36cee86bce5b76c SHA256 72e659f90bb5734b50a5ea02d92348dfcf99868ecbabdcf4cb64bf3bded4e3bb
-MD5 a21c4702fce8fdfea0541c2e47f5e348 files/eselect.blas.atlas 197
-RMD160 fc69bacf24979485653a2d61298fdbf21464c089 files/eselect.blas.atlas 197
-SHA256 72e659f90bb5734b50a5ea02d92348dfcf99868ecbabdcf4cb64bf3bded4e3bb files/eselect.blas.atlas 197
-AUX eselect.blas.threaded-atlas 233 RMD160 eb70808c9a2e6a27b4f10f991b5c59a693e75914 SHA1 93c8a25e4e0b1e8168bafcd8fb62109e656f56ad SHA256 85d98b8a4b8eb75927eac32623dc3c6a7ee55a259176196d075f6b112ae35726
-MD5 8a1f2685e5080a6d02239e4cf0f74f75 files/eselect.blas.threaded-atlas 233
-RMD160 eb70808c9a2e6a27b4f10f991b5c59a693e75914 files/eselect.blas.threaded-atlas 233
-SHA256 85d98b8a4b8eb75927eac32623dc3c6a7ee55a259176196d075f6b112ae35726 files/eselect.blas.threaded-atlas 233
-AUX eselect.cblas.atlas 240 RMD160 08dd3aba18a1c0c5a6a9e925a506cd8a6118c906 SHA1 92184db3b149e0225b3f09b02cc29f9eea0d6869 SHA256 44234a398340b79873cf40548c0b67179d42235ddae7ef7c9b8caf7cf2f20ac9
-MD5 adbbbf334d670c397d79db05eae7a5a3 files/eselect.cblas.atlas 240
-RMD160 08dd3aba18a1c0c5a6a9e925a506cd8a6118c906 files/eselect.cblas.atlas 240
-SHA256 44234a398340b79873cf40548c0b67179d42235ddae7ef7c9b8caf7cf2f20ac9 files/eselect.cblas.atlas 240
-AUX eselect.cblas.threaded-atlas 279 RMD160 86b5feb044f2abc3760aa93abc9dcf5d5120d36f SHA1 d5d36f5d475585ef1ef556fc7de20e3688e9bcee SHA256 abb808af099e7ff410186e69ce7e8ada90f6482bc7ebe306bc8b98a00298d82c
-MD5 419b3217f2446bbebef90cce8ff3f8e8 files/eselect.cblas.threaded-atlas 279
-RMD160 86b5feb044f2abc3760aa93abc9dcf5d5120d36f files/eselect.cblas.threaded-atlas 279
-SHA256 abb808af099e7ff410186e69ce7e8ada90f6482bc7ebe306bc8b98a00298d82c files/eselect.cblas.threaded-atlas 279
-AUX war 545 RMD160 6f44c25e739703f988180959608094aa633db7bf SHA1 d90a66e57395e01b94bac9b444590de8fef77aca SHA256 696a8e1cc3918ce5d19f0aa41250d5f052244527a5e3804b025db7938f06ae7b
-MD5 13d26350d75e6993f1b3ec48ca97f14e files/war 545
-RMD160 6f44c25e739703f988180959608094aa633db7bf files/war 545
-SHA256 696a8e1cc3918ce5d19f0aa41250d5f052244527a5e3804b025db7938f06ae7b files/war 545
-DIST atlas3.7.37.tar.bz2 2282682 RMD160 33f728d2d25c396179748c43aeff9ab71107ddc8 SHA1 32ea739fc4682fb2a9b6625d1a912baaf8f31e1a SHA256 bbc56b6355c07666d8021f640da00a35838e87ec4cb4cf52bdbb25336635fd65
-EBUILD blas-atlas-3.7.37.ebuild 6477 RMD160 89da52e5fc4cfef59532dac010a4dc56b6cb8e71 SHA1 9807a5ea10113e611fd3fb2a1f3956f0b4b51495 SHA256 3ee0f78a47dc0b90b96c4ba0010fbfcb67d4008f306df0e1e96f6c8d2df64b79
-MD5 39741ab94ea5f1a9c1741f5ea3b1560c blas-atlas-3.7.37.ebuild 6477
-RMD160 89da52e5fc4cfef59532dac010a4dc56b6cb8e71 blas-atlas-3.7.37.ebuild 6477
-SHA256 3ee0f78a47dc0b90b96c4ba0010fbfcb67d4008f306df0e1e96f6c8d2df64b79 blas-atlas-3.7.37.ebuild 6477
-MISC metadata.xml 580 RMD160 7ce0902e03a760caed898006d33e2b7a02889a4a SHA1 79f4b164312be4ef4997f45bc565245d7e38cf23 SHA256 cdf15df04609b262f0bb8f6b8dad7a5b4c60851d943b4b5112b3e890bc18772c
-MD5 10420bb4a733d750626ceda5880997ad metadata.xml 580
-RMD160 7ce0902e03a760caed898006d33e2b7a02889a4a metadata.xml 580
-SHA256 cdf15df04609b262f0bb8f6b8dad7a5b4c60851d943b4b5112b3e890bc18772c metadata.xml 580
-MD5 45a53428e9977ee64a90079dcb9ad8fd files/digest-blas-atlas-3.7.37 241
-RMD160 7f55a383c5d2af30bfd70a80784139e2370f1428 files/digest-blas-atlas-3.7.37 241
-SHA256 89f61ea37817603d6d7f7ea7001f7915ac64ffb32c2810ea65e6ada54f0677e0 files/digest-blas-atlas-3.7.37 241
diff --git a/sci-libs/blas-atlas/blas-atlas-3.7.37.ebuild b/sci-libs/blas-atlas/blas-atlas-3.7.37.ebuild
deleted file mode 100644
index 40172f4e8..000000000
--- a/sci-libs/blas-atlas/blas-atlas-3.7.37.ebuild
+++ /dev/null
@@ -1,211 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs fortran multilib
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software BLAS implementation"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-MY_PN=${PN/blas-/}
-SRC_URI="mirror://sourceforge/math-atlas/${MY_PN}${PV}.tar.bz2"
-# mirror://gentoo/${MY_PN}-${PV}-shared-libs.patch.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ppc ~ppc64 ~sparc ~x86"
-IUSE="doc"
-
-RDEPEND="app-admin/eselect-blas
- app-admin/eselect-cblas
- dev-util/pkgconfig
- doc? ( app-doc/blas-docs )"
-
-DEPEND="app-admin/eselect-blas
- app-admin/eselect-cblas
- >=sys-devel/libtool-1.5"
-
-S="${WORKDIR}/ATLAS"
-BLD_DIR="${S}/gentoo-build"
-RPATH="${DESTTREE}/$(get_libdir)/blas"
-
-pkg_setup() {
- # icc won't compile (as of icc-10.0.025)
- # and will blow out $PORTAGE_TMPDIR
- if [[ $(tc-getCC) = icc* ]]; then
- eerror "icc compiler is not supported with sci-libs/blas-atlas"
- die "blas-atlas won't compile with icc"
- fi
-
- FORTRAN="g77 gfortran ifc"
- fortran_pkg_setup
- echo
- ewarn "Please make sure to disable CPU throttling completely"
- ewarn "during the compile of blas-atlas. Otherwise, all atlas"
- ewarn "generated timings will be completely random and the"
- ewarn "performance of the resulting libraries will be degraded"
- ewarn "considerably."
- echo
- ewarn "For users of <=gcc-4.1.1 only:"
- ewarn "If you experience failing SANITY tests during"
- ewarn "atlas' compile please try passing -mfpmath=387; this"
- ewarn "option might also result in much better performance"
- ewarn "than using then sse instruction set depending on your"
- ewarn "CPU."
- echo
- epause 10
-}
-
-src_unpack() {
- unpack ${A}
- cd ${S}
-
- #epatch "${DISTDIR}"/${MY_PN}-${PV}-shared-libs.patch.bz2
- epatch "${FILESDIR}"/${MY_PN}-${PV}-shared-libs.patch
- epatch "${FILESDIR}"/${MY_PN}-asm-gentoo.patch
-
- # increase amount of workspace to improve threaded performance
- sed -e "s:16777216:167772160:" -i include/atlas_lvl3.h || \
- die "Failed to fix ATL_MaxMalloc"
-
- sed -e "s:= gcc:= $(tc-getCC) ${CFLAGS}:" \
- -i CONFIG/src/SpewMakeInc.c || die "Failed to fix Spewmake"
-
- mkdir ${BLD_DIR} || die "failed to generate build directory"
- cd ${BLD_DIR}
- cp "${FILESDIR}"/war . && chmod a+x war || \
- die "failed to install war"
-
- local archselect
- if [[ "${ARCH}" == "amd64" || "${ARCH}" == "ppc64" ]]; then
- archselect="-b 64"
- elif [ "${ARCH}" == "alpha" ]; then
- archselect=""
- else
- archselect="-b 32"
- fi
-
- ../configure \
- --cc="$(tc-getCC)" \
- --cflags="${CFLAGS}" \
- --prefix="${D}/${DESTTREE}" \
- --libdir="${D}/${DESTTREE}/$(get_libdir)/atlas" \
- --incdir="${D}/${DESTTREE}/include" \
- -C ac "$(tc-getCC)" -F ac "${CFLAGS}" \
- -C if "${FORTRANC}" -F if "${FFLAGS:--O2}" \
- -Ss pmake "\$(MAKE) ${MAKEOPTS}" \
- -Si cputhrchk 0 ${archselect} \
- || die "configure failed"
-
-
-}
-
-src_compile() {
- cd ${BLD_DIR}
- emake -j1 || die "emake failed"
-
- make shared LIBDIR="$(get_libdir)" RPATH="${RPATH}/atlas" || \
- die "failed to build shared libraries"
-
- # build shared libraries of threaded libraries if applicable
- if [ -d gentoo/libptcblas.a ]; then
- make ptshared LIBDIR="$(get_libdir)" RPATH="${RPATH}/threaded-atlas" || \
- die "failed to build threaded shared libraries"
- fi
-}
-
-src_test() {
- # make check does not work because
- # we don't build lapack libs
- for i in F77 C; do
- einfo "Testing ${i} interface"
- cd ${BLD_DIR}/interfaces/blas/${i}/testing
- make sanity_test || die "make tests for ${i} failed"
- if [ -d ${BLD_DIR}/gentoo/libptf77blas.a ]; then
- make ptsanity_test || die "make tests threaded for ${i}failed"
- fi
- done
- echo "Timing ATLAS"
- cd ${BLD_DIR}
- make time || die "make time failed"
-}
-
-src_install () {
- dodir "${RPATH}"/atlas
- cd ${BLD_DIR}/gentoo/libs
- cp -P libatlas* "${D}/${DESTTREE}/$(get_libdir)" || \
- die "Failed to install libatlas"
-
- # pkgconfig files
- local extlibs="-lm"
- local threadlibs
- [[ ${FORTRANC} == "gfortran" ]] && extlibs="${extlibs} -lgfortran"
- [[ ${FORTRANC} == "g77" ]] && extlibs="${extlibs} -lg2c"
- cp "${FILESDIR}"/blas.pc.in blas.pc
- cp "${FILESDIR}"/cblas.pc.in cblas.pc
- sed -i \
- -e "s:@LIBDIR@:$(get_libdir):" \
- -e "s:@PV@:${PV}:" \
- -e "s:@EXTLIBS@:${extlibs}:g" \
- -e "s:@THREADLIBS@:${threadlibs}:g" \
- *blas.pc || die "sed *blas.pc failed"
-
- cp -P *blas* "${D}/${RPATH}"/atlas || \
- die "Failed to install blas/cblas"
- eselect blas add $(get_libdir) "${FILESDIR}"/eselect.blas.atlas atlas
- eselect cblas add $(get_libdir) "${FILESDIR}"/eselect.cblas.atlas atlas
-
- if [ -d ${BLD_DIR}/gentoo/threaded-libs ]
- then
- dodir "${RPATH}"/threaded-atlas
- cd ${BLD_DIR}/gentoo/threaded-libs
-
- # pkgconfig files
- cp ${FILESDIR}/blas.pc.in blas.pc
- cp ${FILESDIR}/cblas.pc.in cblas.pc
- threadlibs="-lpthread"
- sed -i \
- -e "s:@LIBDIR@:$(get_libdir):" \
- -e "s:@PV@:${PV}:" \
- -e "s:@EXTLIBS@:${extlibs}:g" \
- -e "s:@THREADLIBS@:${threadlibs}:g" \
- *blas.pc || die "sed *blas.pc failed"
-
- cp -P * "${D}/${RPATH}"/threaded-atlas || \
- die "Failed to install threaded atlas"
- eselect blas add $(get_libdir) "${FILESDIR}"/eselect.blas.threaded-atlas threaded-atlas
- eselect cblas add $(get_libdir) "${FILESDIR}"/eselect.cblas.threaded-atlas threaded-atlas
- fi
-
- insinto "${DESTTREE}"/include/atlas
- doins "${S}"/include/cblas.h "${S}"/include/atlas_misc.h \
- "${S}"/include/atlas_enum.h || \
- die "failed to install headers"
-
- # These headers contain the architecture-specific
- # optimizations determined by ATLAS. The atlas-lapack build
- # is much shorter if they are available, so save them:
- doins ${BLD_DIR}/include/*.h || \
- die "failed to install timing headers"
-
- # some docs
- cd "${S}"/doc
- dodoc INDEX.txt AtlasCredits.txt ChangeLog || die "dodoc failed"
- # atlas specific doc (blas generic docs installed by blas-docs)
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins atlas*pdf cblasqref.pdf || die "doins docs failed"
- fi
-}
-
-pkg_postinst() {
- local THREADED
- [ -f "${RPATH}"/threaded-atlas/libcblas.a ] && THREADED="threaded-"
- [[ -z "$(eselect blas show)" ]] && eselect blas set ${THREADED}atlas
- [[ -z "$(eselect cblas show)" ]] && eselect cblas set ${THREADED}atlas
-
- elog "Use 'eselect blas' and 'eselect cblas' (as root) to select"
- elog "one of the ATLAS blas and cblas profiles."
- elog "Use 'pkg-config --libs blas' to link with ATLAS blas."
- elog "Use 'pkg-config --cflags cblas' and 'pkg-config --libs cblas'"
- elog "to compile and link with ATLAS cblas"
-}
diff --git a/sci-libs/blas-atlas/files/atlas-3.7.37-shared-libs.patch b/sci-libs/blas-atlas/files/atlas-3.7.37-shared-libs.patch
deleted file mode 100644
index edbd32e2b..000000000
--- a/sci-libs/blas-atlas/files/atlas-3.7.37-shared-libs.patch
+++ /dev/null
@@ -1,1393 +0,0 @@
-diff -Nur ATLAS.orig/CONFIG/src/atlconf_misc.c ATLAS/CONFIG/src/atlconf_misc.c
---- ATLAS.orig/CONFIG/src/atlconf_misc.c 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/CONFIG/src/atlconf_misc.c 2007-08-18 13:48:46.000000000 +0100
-@@ -769,3 +769,28 @@
- }
- return(new);
- }
-+
-+char *NewConcatenedString(char *old, char *app)
-+/*
-+ * RETURNS: string holding : old + app
-+ * NOTE: frees old string after copy
-+ */
-+
-+{
-+ char *new;
-+ if (!old)
-+ {
-+ new = malloc(sizeof(char)*(strlen(app)+1));
-+ assert(new);
-+ strcpy(new, app);
-+ }
-+ else
-+ {
-+ new = malloc(sizeof(char)*(strlen(old) + strlen(app)+1));
-+ assert(new);
-+ strcpy(new, old);
-+ strcat(new, app);
-+ free(old);
-+ }
-+ return(new);
-+}
-diff -Nur ATLAS.orig/CONFIG/src/config.c ATLAS/CONFIG/src/config.c
---- ATLAS.orig/CONFIG/src/config.c 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/CONFIG/src/config.c 2007-08-18 13:48:43.000000000 +0100
-@@ -284,7 +284,7 @@
- if (verb > 1) fprintf(stderr, "SUCCESS!\n");
- F77LIBdir = NewStringCopy(sp-2);
- F77LIBdir = NewAppendedString(F77LIBdir, "-l");
-- F77LIBdir = NewAppendedString(F77LIBdir, f77lib);
-+ F77LIBdir = NewConcatenedString(F77LIBdir, f77lib);
- if (verb)
- fprintf(stderr, "F77LIB = %s\n", F77LIBdir);
- return(F77LIBdir);
-diff -Nur ATLAS.orig/CONFIG/src/Makefile ATLAS/CONFIG/src/Makefile
---- ATLAS.orig/CONFIG/src/Makefile 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/CONFIG/src/Makefile 2007-08-18 13:44:42.000000000 +0100
-@@ -347,6 +347,18 @@
- $(MAKE) -f Make.top sanity_test
- pttest :
- $(MAKE) -f Make.top ptsanity_test
-+shared :
-+ $(MAKE) -f Make.top shared arch=$(arch)
-+shared-strip :
-+ $(MAKE) -f Make.top shared-strip arch=$(arch)
-+ptshared :
-+ $(MAKE) -f Make.top ptshared arch=$(arch)
-+ptshared-strip :
-+ $(MAKE) -f Make.top ptshared-strip arch=$(arch)
-+liblapack.so :
-+ $(MAKE) -f Make.top liblapack.so arch=$(arch)
-+
-+
- $(INCINSTdir) :
- mkdir -p $(INCINSTdir)
- chmod 0755 $(INCINSTdir)
-diff -Nur ATLAS.orig/CONFIG/src/SpewMakeInc.c ATLAS/CONFIG/src/SpewMakeInc.c
---- ATLAS.orig/CONFIG/src/SpewMakeInc.c 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/CONFIG/src/SpewMakeInc.c 2007-08-18 13:44:42.000000000 +0100
-@@ -642,10 +642,12 @@
- fprintf(fpout, " NCFLAGS = $(ICCFLAGS)\n");
- fprintf(fpout, "\n CLINKER = $(ICC)\n CLINKFLAGS = $(ICCFLAGS)\n");
- fprintf(fpout, " FLINKER = $(F77)\n FLINKFLAGS = $(F77FLAGS)\n");
-- fprintf(fpout, " FCLINKFLAGS = $(FLINKFLAGS)");
-- if (strstr(comps[F77_], "ifort") && !OSIsWin(OS))
-- fprintf(fpout, " -nofor_main");
-- fprintf(fpout, "\n ARCHIVER = ar\n");
-+ fprintf(fpout, " FLINKER = $(F77)\n FLINKFLAGS = $(F77FLAGS)");
-+ if (strstr(comps[F77_], "ifort"))
-+ fprintf(fpout, " -nofor_main");
-+ fprintf(fpout, "\n LIBTOOL = libtool --mode=compile\n");
-+ fprintf(fpout, " FCLINKFLAGS = $(FLINKFLAGS)\n");
-+ fprintf(fpout, " ARCHIVER = $(BLDdir)/war ar\n");
- fprintf(fpout, " ARFLAGS = r\n");
- if (OS == OSOSX && MachIsPPC(mach))
- fprintf(fpout, " RANLIB = ranlib\n\n");
-diff -Nur ATLAS.orig/include/gentoo_libtool.inc ATLAS/include/gentoo_libtool.inc
---- ATLAS.orig/include/gentoo_libtool.inc 1970-01-01 01:00:00.000000000 +0100
-+++ ATLAS/include/gentoo_libtool.inc 2007-08-18 13:44:42.000000000 +0100
-@@ -0,0 +1,8 @@
-+ICC:=$(LIBTOOL) --tag=CC $(ICC)
-+SMC:=$(LIBTOOL) --tag=CC $(SMC)
-+DMC:=$(LIBTOOL) --tag=CC $(DMC)
-+SKC:=$(LIBTOOL) --tag=CC $(SKC)
-+DKC:=$(LIBTOOL) --tag=CC $(DKC)
-+XCC:=$(LIBTOOL) --tag=CC $(XCC)
-+F77:=$(LIBTOOL) --tag=F77 $(F77)
-+
-diff -Nur ATLAS.orig/makes/Make.aux ATLAS/makes/Make.aux
---- ATLAS.orig/makes/Make.aux 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.aux 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/auxil
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- ptobj = ATL_ptflushcache.o
- obj = ATL_flushcache.o ATL_cputime.o ATL_walltime.o ATL_xerbla.o ATL_lcm.o \
- ATL_buildinfo.o ATL_ssyreflect.o ATL_sgemoveT.o ATL_sgemove.o \
-@@ -118,12 +120,16 @@
-
- ATL_cputime.o : $(SYSdir)/ATL_cputime.o
- cp $(SYSdir)/ATL_cputime.o ATL_cputime.o
-+ ln -sf $(SYSdir)/ATL_cputime.lo ATL_cputime.lo
-+ ln -sf $(SYSdir)/.libs/ATL_cputime.o .libs/ATL_cputime.o
- $(SYSdir)/ATL_cputime.o: $(SYSdir)/ATL_cputime.c
- cd $(SYSdir) ; $(MAKE) ATL_cputime.o
- $(SYSdir)/ATL_cputime.c:
- cd $(SYSdir) ; $(MAKE) ATL_cputime.o
- ATL_walltime.o : $(SYSdir)/ATL_walltime.o
- cp $(SYSdir)/ATL_walltime.o ATL_walltime.o
-+ ln -sf $(SYSdir)/ATL_walltime.lo ATL_walltime.lo
-+ ln -sf $(SYSdir)/.libs/ATL_walltime.o .libs/ATL_walltime.o
- $(SYSdir)/ATL_walltime.o: $(SYSdir)/ATL_walltime.c
- cd $(SYSdir) ; $(MAKE) ATL_walltime.o
- $(SYSdir)/ATL_walltime.c:
-diff -Nur ATLAS.orig/makes/Make.bin ATLAS/makes/Make.bin
---- ATLAS.orig/makes/Make.bin 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.bin 2007-08-18 13:44:42.000000000 +0100
-@@ -58,11 +58,11 @@
- cd $(BLDdir)/src/blas/level3 ; $(MAKE) lib
- cd $(BLDdir)/src/blas/pklevel3 ; $(MAKE) lib
- cd $(BLDdir)/src/blas/reference/level3 ; $(MAKE) lib
-- cd $(BLDdir)/src/lapack ; $(MAKE) lib
-+# cd $(BLDdir)/src/lapack ; $(MAKE) lib
- cd $(BLDdir)/interfaces/blas/C/src ; $(MAKE) all
- - cd $(BLDdir)/interfaces/blas/F77/src ; $(MAKE) lib
-- cd $(BLDdir)/interfaces/lapack/C/src ; $(MAKE) lib
-- - cd $(BLDdir)/interfaces/lapack/F77/src ; $(MAKE) lib
-+# cd $(BLDdir)/interfaces/lapack/C/src ; $(MAKE) lib
-+# - cd $(BLDdir)/interfaces/lapack/F77/src ; $(MAKE) lib
-
- IPostTune:
- cd $(L3Tdir) ; $(MAKE) res/atlas_trsmNB.h
-@@ -1079,7 +1079,7 @@
- cd $(L1Bdir) ; $(MAKE) slvl1
-
- slapack :
-- cd $(BLDdir)/src/lapack ; $(MAKE) slib
-+# cd $(BLDdir)/src/lapack ; $(MAKE) slib
-
- xsprintblk : sprintblk.o
- $(CLINKER) -o $@ sprintblk.o $(ATLASlib)
-@@ -1972,7 +1972,7 @@
- cd $(L1Bdir) ; $(MAKE) dlvl1
-
- dlapack :
-- cd $(BLDdir)/src/lapack ; $(MAKE) dlib
-+# cd $(BLDdir)/src/lapack ; $(MAKE) dlib
-
- xdprintblk : dprintblk.o
- $(CLINKER) -o $@ dprintblk.o $(ATLASlib)
-@@ -2865,7 +2865,7 @@
- cd $(L1Bdir) ; $(MAKE) clvl1
-
- clapack :
-- cd $(BLDdir)/src/lapack ; $(MAKE) clib
-+# cd $(BLDdir)/src/lapack ; $(MAKE) clib
-
- xcprintblk : cprintblk.o
- $(CLINKER) -o $@ cprintblk.o $(ATLASlib)
-@@ -3758,7 +3758,7 @@
- cd $(L1Bdir) ; $(MAKE) zlvl1
-
- zlapack :
-- cd $(BLDdir)/src/lapack ; $(MAKE) zlib
-+# cd $(BLDdir)/src/lapack ; $(MAKE) zlib
-
- xzprintblk : zprintblk.o
- $(CLINKER) -o $@ zprintblk.o $(ATLASlib)
-diff -Nur ATLAS.orig/makes/Make.cblas ATLAS/makes/Make.cblas
---- ATLAS.orig/makes/Make.cblas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.cblas 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/interfaces/blas/C/src/
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- aobj = cblas_xerbla.o cblas_errprn.o
- sptlvl3obj = cblas_sptgemm.o cblas_sptsymm.o cblas_sptsyr2k.o cblas_sptsyrk.o \
- cblas_spttrmm.o cblas_spttrsm.o
-diff -Nur ATLAS.orig/makes/Make.Clp ATLAS/makes/Make.Clp
---- ATLAS.orig/makes/Make.Clp 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.Clp 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/interfaces/lapack/C/src
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = clapack_sgesv.o clapack_sgetrf.o clapack_sgetri.o clapack_sgetrs.o \
- clapack_slauum.o clapack_sposv.o clapack_spotrf.o clapack_spotri.o \
- clapack_spotrs.o clapack_strtri.o
-diff -Nur ATLAS.orig/makes/Make.f77blas ATLAS/makes/Make.f77blas
---- ATLAS.orig/makes/Make.f77blas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.f77blas 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/interfaces/blas/F77/src
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.Flp ATLAS/makes/Make.Flp
---- ATLAS.orig/makes/Make.Flp 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.Flp 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/interfaces/lapack/F77/src
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_f77wrap_sgesv.o ATL_f77wrap_sgetnb.o ATL_f77wrap_sgetrf.o \
- ATL_f77wrap_sgetri.o ATL_f77wrap_sgetrs.o ATL_f77wrap_slauum.o \
- ATL_f77wrap_sposv.o ATL_f77wrap_spotrf.o ATL_f77wrap_spotrs.o \
-diff -Nur ATLAS.orig/makes/Make.gpmm ATLAS/makes/Make.gpmm
---- ATLAS.orig/makes/Make.gpmm 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.gpmm 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/pklevel3/gpmm
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- all : lib
- lib : dlib slib zlib clib
- clean : sclean dclean cclean zclean
-diff -Nur ATLAS.orig/makes/Make.l1ptblas ATLAS/makes/Make.l1ptblas
---- ATLAS.orig/makes/Make.l1ptblas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l1ptblas 2007-08-18 13:44:42.000000000 +0100
-@@ -1,3 +1,5 @@
-+include $(INCSdir)/gentoo_libtool.inc
-+
- slib:
- dlib:
- clib:
-diff -Nur ATLAS.orig/makes/Make.l1ref ATLAS/makes/Make.l1ref
---- ATLAS.orig/makes/Make.l1ref 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l1ref 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,10 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/reference/level1
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l1src ATLAS/makes/Make.l1src
---- ATLAS.orig/makes/Make.l1src 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l1src 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level1
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_dsdot.o ATL_sdsdot.o ATL_srotg.o ATL_srotm.o ATL_srotmg.o
-
- dobj = ATL_drotg.o ATL_drotm.o ATL_drotmg.o
-@@ -17,29 +19,29 @@
-
- sgen :
- $(MAKE) Make_srot
-- $(MAKE) -f Make_srot lib
-+ $(MAKE) -f Make_srot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_saxpby
-- $(MAKE) -f Make_saxpby lib
-+ $(MAKE) -f Make_saxpby lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_scpsc
-- $(MAKE) -f Make_scpsc lib
-+ $(MAKE) -f Make_scpsc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_sset
-- $(MAKE) -f Make_sset lib
-+ $(MAKE) -f Make_sset lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_snrm2
-- $(MAKE) -f Make_snrm2 lib
-+ $(MAKE) -f Make_snrm2 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_sasum
-- $(MAKE) -f Make_sasum lib
-+ $(MAKE) -f Make_sasum lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_sdot
-- $(MAKE) -f Make_sdot lib
-+ $(MAKE) -f Make_sdot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_sswap
-- $(MAKE) -f Make_sswap lib
-+ $(MAKE) -f Make_sswap lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_sscal
-- $(MAKE) -f Make_sscal lib
-+ $(MAKE) -f Make_sscal lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_scopy
-- $(MAKE) -f Make_scopy lib
-+ $(MAKE) -f Make_scopy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_saxpy
-- $(MAKE) -f Make_saxpy lib
-+ $(MAKE) -f Make_saxpy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_siamax
-- $(MAKE) -f Make_siamax lib
-+ $(MAKE) -f Make_siamax lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- slvl1 : slib
- slib : slib.grd
- $(MAKE) sgen
-@@ -52,29 +54,29 @@
- rm -f $(sobj) s*.grd
- dgen :
- $(MAKE) Make_drot
-- $(MAKE) -f Make_drot lib
-+ $(MAKE) -f Make_drot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_daxpby
-- $(MAKE) -f Make_daxpby lib
-+ $(MAKE) -f Make_daxpby lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dcpsc
-- $(MAKE) -f Make_dcpsc lib
-+ $(MAKE) -f Make_dcpsc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dset
-- $(MAKE) -f Make_dset lib
-+ $(MAKE) -f Make_dset lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dnrm2
-- $(MAKE) -f Make_dnrm2 lib
-+ $(MAKE) -f Make_dnrm2 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dasum
-- $(MAKE) -f Make_dasum lib
-+ $(MAKE) -f Make_dasum lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_ddot
-- $(MAKE) -f Make_ddot lib
-+ $(MAKE) -f Make_ddot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dswap
-- $(MAKE) -f Make_dswap lib
-+ $(MAKE) -f Make_dswap lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dscal
-- $(MAKE) -f Make_dscal lib
-+ $(MAKE) -f Make_dscal lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_dcopy
-- $(MAKE) -f Make_dcopy lib
-+ $(MAKE) -f Make_dcopy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_daxpy
-- $(MAKE) -f Make_daxpy lib
-+ $(MAKE) -f Make_daxpy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_diamax
-- $(MAKE) -f Make_diamax lib
-+ $(MAKE) -f Make_diamax lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- dlvl1 : dlib
- dlib : dlib.grd
- $(MAKE) dgen
-@@ -87,31 +89,31 @@
- rm -f $(dobj) d*.grd
- cgen :
- $(MAKE) Make_crot
-- $(MAKE) -f Make_crot lib
-+ $(MAKE) -f Make_crot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_caxpby
-- $(MAKE) -f Make_caxpby lib
-+ $(MAKE) -f Make_caxpby lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_ccpsc
-- $(MAKE) -f Make_ccpsc lib
-+ $(MAKE) -f Make_ccpsc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cset
-- $(MAKE) -f Make_cset lib
-+ $(MAKE) -f Make_cset lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cnrm2
-- $(MAKE) -f Make_cnrm2 lib
-+ $(MAKE) -f Make_cnrm2 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_casum
-- $(MAKE) -f Make_casum lib
-+ $(MAKE) -f Make_casum lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cdot
-- $(MAKE) -f Make_cdot lib
-+ $(MAKE) -f Make_cdot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cswap
-- $(MAKE) -f Make_cswap lib
-+ $(MAKE) -f Make_cswap lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cscal
-- $(MAKE) -f Make_cscal lib
-+ $(MAKE) -f Make_cscal lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_ccopy
-- $(MAKE) -f Make_ccopy lib
-+ $(MAKE) -f Make_ccopy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_caxpy
-- $(MAKE) -f Make_caxpy lib
-+ $(MAKE) -f Make_caxpy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_ciamax
-- $(MAKE) -f Make_ciamax lib
-+ $(MAKE) -f Make_ciamax lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_cdotc
-- $(MAKE) -f Make_cdotc lib
-+ $(MAKE) -f Make_cdotc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- clvl1 : clib
- clib : slib clib.grd
- $(MAKE) cgen
-@@ -124,31 +126,31 @@
- rm -f $(cobj) c*.grd
- zgen :
- $(MAKE) Make_zrot
-- $(MAKE) -f Make_zrot lib
-+ $(MAKE) -f Make_zrot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zaxpby
-- $(MAKE) -f Make_zaxpby lib
-+ $(MAKE) -f Make_zaxpby lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zcpsc
-- $(MAKE) -f Make_zcpsc lib
-+ $(MAKE) -f Make_zcpsc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zset
-- $(MAKE) -f Make_zset lib
-+ $(MAKE) -f Make_zset lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_znrm2
-- $(MAKE) -f Make_znrm2 lib
-+ $(MAKE) -f Make_znrm2 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zasum
-- $(MAKE) -f Make_zasum lib
-+ $(MAKE) -f Make_zasum lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zdot
-- $(MAKE) -f Make_zdot lib
-+ $(MAKE) -f Make_zdot lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zswap
-- $(MAKE) -f Make_zswap lib
-+ $(MAKE) -f Make_zswap lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zscal
-- $(MAKE) -f Make_zscal lib
-+ $(MAKE) -f Make_zscal lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zcopy
-- $(MAKE) -f Make_zcopy lib
-+ $(MAKE) -f Make_zcopy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zaxpy
-- $(MAKE) -f Make_zaxpy lib
-+ $(MAKE) -f Make_zaxpy lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_ziamax
-- $(MAKE) -f Make_ziamax lib
-+ $(MAKE) -f Make_ziamax lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(MAKE) Make_zdotc
-- $(MAKE) -f Make_zdotc lib
-+ $(MAKE) -f Make_zdotc lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- zlvl1 : zlib
- zlib : dlib zlib.grd
- $(MAKE) zgen
-diff -Nur ATLAS.orig/makes/Make.l1tune ATLAS/makes/Make.l1tune
---- ATLAS.orig/makes/Make.l1tune 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l1tune 2007-08-18 13:44:42.000000000 +0100
-@@ -1221,7 +1221,7 @@
- ./xaxpysrch -p c
- cp -f GEN/* $(L1Bdir)/.
- ATL_caxpy_stub.o : $(mySRCdir)/AXPY/axpy_stub.c
-- $(ICC) $(ICCFLAGS) -DSCPLX -c -o $@ $(mySRCdir)/AXPY/axpy_stub.c
-+ $(LIBTOOL) --tag=CC $(ICC) $(ICCFLAGS) -DSCPLX -c -o $@ $(mySRCdir)/AXPY/axpy_stub.c
- caxpytime.o : $(mySRCdir)/axpytime.c
- $(ICC) $(ICCFLAGS) -o caxpytime.o -c -DSCPLX $(mySRCdir)/axpytime.c
- caxpytest.o : $(mySRCdir)/axpytest.c tstlib.grd
-diff -Nur ATLAS.orig/makes/Make.l2 ATLAS/makes/Make.l2
---- ATLAS.orig/makes/Make.l2 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level2/
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l2aux ATLAS/makes/Make.l2aux
---- ATLAS.orig/makes/Make.l2aux 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2aux 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level2/kernel
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l2kern ATLAS/makes/Make.l2kern
---- ATLAS.orig/makes/Make.l2kern 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2kern 2007-08-18 13:44:42.000000000 +0100
-@@ -1,5 +1,7 @@
- include Make.inc
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_sgpmvUN_a1_x1_b0_y1.o ATL_sgpmvLN_a1_x1_b0_y1.o \
- ATL_sgpmvUN_a1_x1_b1_y1.o ATL_sgpmvLN_a1_x1_b1_y1.o \
- ATL_sgpmvUN_a1_x1_bX_y1.o ATL_sgpmvLN_a1_x1_bX_y1.o
-diff -Nur ATLAS.orig/makes/Make.l2ptblas ATLAS/makes/Make.l2ptblas
---- ATLAS.orig/makes/Make.l2ptblas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2ptblas 2007-08-18 13:44:42.000000000 +0100
-@@ -1,3 +1,5 @@
-+include $(INCSdir)/gentoo_libtool.inc
-+
- slib:
- dlib:
- clib:
-diff -Nur ATLAS.orig/makes/Make.l2ref ATLAS/makes/Make.l2ref
---- ATLAS.orig/makes/Make.l2ref 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2ref 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/reference/level2
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l2src ATLAS/makes/Make.l2src
---- ATLAS.orig/makes/Make.l2src 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l2src 2007-08-18 13:44:42.000000000 +0100
-@@ -1,5 +1,7 @@
- include Make.inc
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_sktrmvLNN.o ATL_sktrmvLNU.o ATL_sktrmvLTN.o ATL_sktrmvLTU.o \
- ATL_sktrmvUNN.o ATL_sktrmvUNU.o ATL_sktrmvUTN.o ATL_sktrmvUTU.o \
- ATL_strmv.o ATL_strmvLN.o ATL_strmvLT.o ATL_strmvUN.o ATL_strmvUT.o
-diff -Nur ATLAS.orig/makes/Make.l3 ATLAS/makes/Make.l3
---- ATLAS.orig/makes/Make.l3 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level3
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l3aux ATLAS/makes/Make.l3aux
---- ATLAS.orig/makes/Make.l3aux 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3aux 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level3/rblas
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l3kern ATLAS/makes/Make.l3kern
---- ATLAS.orig/makes/Make.l3kern 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3kern 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/level3/kernel
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_ssycopyL_a1.o ATL_ssycopyL_aX.o ATL_ssycopyU_a1.o \
- ATL_ssycopyU_aX.o ATL_ssymmLL.o ATL_ssymmLU.o ATL_ssymmRL.o \
- ATL_ssymmRU.o ATL_ssyr2kLN.o ATL_ssyr2kLT.o ATL_ssyr2kUN.o \
-diff -Nur ATLAS.orig/makes/Make.l3ptblas ATLAS/makes/Make.l3ptblas
---- ATLAS.orig/makes/Make.l3ptblas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3ptblas 2007-08-18 13:44:42.000000000 +0100
-@@ -40,6 +40,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/pthreads/blas/level3
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l3ref ATLAS/makes/Make.l3ref
---- ATLAS.orig/makes/Make.l3ref 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3ref 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/reference/level3
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.l3tune ATLAS/makes/Make.l3tune
---- ATLAS.orig/makes/Make.l3tune 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.l3tune 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/tune/blas/level3
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- $(SYSdir)/time.o:
- cd $(SYSdir) ; $(MAKE) time.o
-
-@@ -33,16 +35,16 @@
-
- force_build :
-
--res/atlas_trsmNB.h : xgen_trsmnb res/sTRSM_NB res/dTRSM_NB
-- ./xgen_trsmnb
-- rm -f $(INCAdir)/atlas_trsmNB.h
-- cp res/atlas_trsmNB.h $(INCAdir)/.
-+res/atlas_trsmNB.h :
-+# ./xgen_trsmnb
-+# rm -f $(INCAdir)/atlas_trsmNB.h
-+# cp res/atlas_trsmNB.h $(INCAdir)/.
- xgen_trsmnb : $(mySRCdir)/gen_trsmnb.c
- $(XCC) $(XCCFLAGS) -o $@ $(mySRCdir)/gen_trsmnb.c
-
- res/sTRSM_NB :
-- $(MAKE) xsinvtrsm
-- $(ATLRUN) $(L3Tdir) xsinvtrsm
-+# $(MAKE) xsinvtrsm
-+# $(ATLRUN) $(L3Tdir) xsinvtrsm
- xsinvtrsm : sinvtrsm.o ATL_strsm.o
- $(MAKE) sbindep
- $(FLINKER) $(FCLINKFLAGS) -o $@ sinvtrsm.o ATL_strsm.o \
-@@ -57,8 +59,8 @@
- $(SKC) -o $@ -c $(sKCFLAGS) -DSREAL $(mySRCdir)/ATL_trsm.c
-
- res/dTRSM_NB :
-- $(MAKE) xdinvtrsm
-- $(ATLRUN) $(L3Tdir) xdinvtrsm
-+# $(MAKE) xdinvtrsm
-+# $(ATLRUN) $(L3Tdir) xdinvtrsm
- xdinvtrsm : dinvtrsm.o ATL_dtrsm.o
- $(MAKE) dbindep
- $(FLINKER) $(FCLINKFLAGS) -o $@ dinvtrsm.o ATL_dtrsm.o \
-@@ -73,8 +75,8 @@
- $(DKC) -o $@ -c $(dKCFLAGS) -DDREAL $(mySRCdir)/ATL_trsm.c
-
- res/cTRSM_NB :
-- $(MAKE) xcinvtrsm
-- $(ATLRUN) $(L3Tdir) xcinvtrsm
-+# $(MAKE) xcinvtrsm
-+# $(ATLRUN) $(L3Tdir) xcinvtrsm
- xcinvtrsm : cinvtrsm.o ATL_ctrsm.o
- $(MAKE) cbindep
- $(FLINKER) $(FCLINKFLAGS) -o $@ cinvtrsm.o ATL_ctrsm.o \
-@@ -89,8 +91,8 @@
- $(CKC) -o $@ -c $(cKCFLAGS) -DSCPLX $(mySRCdir)/ATL_trsm.c
-
- res/zTRSM_NB :
-- $(MAKE) xzinvtrsm
-- $(ATLRUN) $(L3Tdir) xzinvtrsm
-+# $(MAKE) xzinvtrsm
-+# $(ATLRUN) $(L3Tdir) xzinvtrsm
- xzinvtrsm : zinvtrsm.o ATL_ztrsm.o
- $(MAKE) zbindep
- $(FLINKER) $(FCLINKFLAGS) -o $@ zinvtrsm.o ATL_ztrsm.o \
-diff -Nur ATLAS.orig/makes/Make.lpsrc ATLAS/makes/Make.lpsrc
---- ATLAS.orig/makes/Make.lpsrc 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.lpsrc 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/lapack
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- all : lib
- lib : dlib slib zlib clib
- clean : sclean dclean cclean zclean
-diff -Nur ATLAS.orig/makes/Make.miptblas ATLAS/makes/Make.miptblas
---- ATLAS.orig/makes/Make.miptblas 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.miptblas 2007-08-18 13:44:42.000000000 +0100
-@@ -39,6 +39,9 @@
- #
- include Make.inc
- mySRCdir = $(SRCdir)/src/pthreads/misc
-+
-+include $(INCSdir)/gentoo_libtool.inc
-+
- #
- ########################################################################
- #
-diff -Nur ATLAS.orig/makes/Make.mmsrc ATLAS/makes/Make.mmsrc
---- ATLAS.orig/makes/Make.mmsrc 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.mmsrc 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/gemm
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- $(INCAdir)/atlas_type.h :
- cd $(SYSdir) ; $(MAKE) RunTyp
-
-@@ -82,7 +84,7 @@
- sclean :
- rm -f $(sobj) s*.grd
- scleanuplib :
-- cd KERNEL ; $(MAKE) -f sMakefile slib
-+ cd KERNEL ; $(MAKE) -f sMakefile slib ICC="$(ICC)"
-
- slib :
- $(MAKE) auxillib scleanuplib susergemm
-@@ -223,7 +225,7 @@
- dclean :
- rm -f $(dobj) d*.grd
- dcleanuplib :
-- cd KERNEL ; $(MAKE) -f dMakefile dlib
-+ cd KERNEL ; $(MAKE) -f dMakefile dlib ICC="$(ICC)"
-
- dlib :
- $(MAKE) auxillib dcleanuplib dusergemm
-@@ -364,7 +366,7 @@
- cclean :
- rm -f $(cobj) c*.grd
- ccleanuplib :
-- cd KERNEL ; $(MAKE) -f cMakefile clib
-+ cd KERNEL ; $(MAKE) -f cMakefile clib ICC="$(ICC)"
-
- clib :
- $(MAKE) auxillib ccleanuplib cusergemm
-@@ -616,7 +618,7 @@
- zclean :
- rm -f $(zobj) z*.grd
- zcleanuplib :
-- cd KERNEL ; $(MAKE) -f zMakefile zlib
-+ cd KERNEL ; $(MAKE) -f zMakefile zlib ICC="$(ICC)"
-
- zlib :
- $(MAKE) auxillib zcleanuplib zusergemm
-diff -Nur ATLAS.orig/makes/Make.mvsrc ATLAS/makes/Make.mvsrc
---- ATLAS.orig/makes/Make.mvsrc 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.mvsrc 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/gemv
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_sgemv.o
-
- dobj = ATL_dgemv.o
-@@ -19,7 +21,7 @@
- clean : sclean dclean cclean zclean
-
- dlib :
-- $(PMAKE) -f Make_dmv dlib
-+ $(PMAKE) -f Make_dmv dlib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(PMAKE) dlib.grd
- dlib.grd : $(dobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(dobj)
-@@ -28,7 +30,7 @@
- dclean :
- rm -f $(dobj) d*.grd
- slib :
-- $(PMAKE) -f Make_smv slib
-+ $(PMAKE) -f Make_smv slib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(PMAKE) slib.grd
- slib.grd : $(sobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(sobj)
-@@ -37,7 +39,7 @@
- sclean :
- rm -f $(sobj) s*.grd
- clib :
-- $(PMAKE) -f Make_cmv clib
-+ $(PMAKE) -f Make_cmv clib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(PMAKE) clib.grd
- clib.grd : $(cobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(cobj)
-@@ -46,7 +48,7 @@
- cclean :
- rm -f $(cobj) c*.grd
- zlib :
-- $(PMAKE) -f Make_zmv zlib
-+ $(PMAKE) -f Make_zmv zlib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- $(PMAKE) zlib.grd
- zlib.grd : $(zobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(zobj)
-diff -Nur ATLAS.orig/makes/Make.mvtune ATLAS/makes/Make.mvtune
---- ATLAS.orig/makes/Make.mvtune 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.mvtune 2007-08-18 13:44:42.000000000 +0100
-@@ -178,26 +178,26 @@
- sgemvtune.o : $(mySRCdir)/gemvtune.c
- $(ICC) -c $(ICCFLAGS) -o $@ -DSREAL $(mySRCdir)/gemvtune.c
- ATL_ssymv.o : $(mySRCdir)/ATL_symv.c atlas_smvN.h atlas_smvS.h
-- $(SKC) -c -I$(MVTdir) $(sKCFLAGS) -o $@ -DSREAL $(mySRCdir)/ATL_symv.c
-+ $(LIBTOOL) --tag=CC $(SKC) -c -I$(MVTdir) $(sKCFLAGS) -o $@ -DSREAL $(mySRCdir)/ATL_symv.c
- ATL_sgemv.o : ATL_gemv.c atlas_smv.h atlas_smvN.h atlas_smvT.h
-- $(SKC) -c -I$(MVTdir) $(sKCFLAGS) -o $@ -DSREAL ATL_gemv.c
-+ $(LIBTOOL) --tag=CC $(SKC) -c -I$(MVTdir) $(sKCFLAGS) -o $@ -DSREAL ATL_gemv.c
- ATL_sgemvN_b0.o : ATL_sgemvN.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETA0 -DALPHA1 ATL_sgemvN.c
- ATL_sgemvN_b1.o : ATL_sgemvN.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETA1 -DALPHA1 ATL_sgemvN.c
- ATL_sgemvN_bX.o : ATL_sgemvN.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETAX -DALPHA1 ATL_sgemvN.c
- ATL_sgemvT_b0.o : ATL_sgemvT.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETA0 -DALPHA1 ATL_sgemvT.c
- ATL_sgemvT_b1.o : ATL_sgemvT.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETA1 -DALPHA1 ATL_sgemvT.c
- ATL_sgemvT_bX.o : ATL_sgemvT.c
-- $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
-+ $(LIBTOOL) --tag=CC $(sMVCC) -c -I$(MVTdir) $(sMVFLAGS) $(CDEFS) $(EXTFLAGS) -o $@ \
- -DSREAL -DBETAX -DALPHA1 ATL_sgemvT.c
-
- res/sMVRES : xmvsearch force_build
-diff -Nur ATLAS.orig/makes/Make.pkl3 ATLAS/makes/Make.pkl3
---- ATLAS.orig/makes/Make.pkl3 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.pkl3 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/pklevel3
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- all : lib
- lib : dlib slib zlib clib
- clean : sclean dclean cclean zclean
-diff -Nur ATLAS.orig/makes/Make.r1src ATLAS/makes/Make.r1src
---- ATLAS.orig/makes/Make.r1src 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.r1src 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/ger
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- sobj = ATL_sger.o
- dobj = ATL_dger.o
- cobj = ATL_cgeru.o ATL_cgerc.o
-@@ -17,7 +19,7 @@
-
- dlib :
- $(PMAKE) dlib.grd
-- $(PMAKE) -f Make_dr1 lib
-+ $(PMAKE) -f Make_dr1 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- dlib.grd : $(dobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(dobj)
- $(RANLIB) $(ATLASlib)
-@@ -26,7 +28,7 @@
- rm -f $(dobj) d*.grd
- slib :
- $(PMAKE) slib.grd
-- $(PMAKE) -f Make_sr1 lib
-+ $(PMAKE) -f Make_sr1 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- slib.grd : $(sobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(sobj)
- $(RANLIB) $(ATLASlib)
-@@ -35,7 +37,7 @@
- rm -f $(sobj) s*.grd
- clib :
- $(PMAKE) clib.grd
-- $(PMAKE) -f Make_cr1 lib
-+ $(PMAKE) -f Make_cr1 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- clib.grd : $(cobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(cobj)
- $(RANLIB) $(ATLASlib)
-@@ -44,7 +46,7 @@
- rm -f $(cobj) c*.grd
- zlib :
- $(PMAKE) zlib.grd
-- $(PMAKE) -f Make_zr1 lib
-+ $(PMAKE) -f Make_zr1 lib ICC="$(ICC)" SKC="$(SKC)" DKC="$(DKC)"
- zlib.grd : $(zobj)
- $(ARCHIVER) $(ARFLAGS) $(ATLASlib) $(zobj)
- $(RANLIB) $(ATLASlib)
-diff -Nur ATLAS.orig/makes/Make.r1tune ATLAS/makes/Make.r1tune
---- ATLAS.orig/makes/Make.r1tune 2007-08-10 16:57:41.000000000 +0100
-+++ ATLAS/makes/Make.r1tune 2007-08-18 13:44:42.000000000 +0100
-@@ -74,12 +74,12 @@
- ATL_sger.o : ATL_ger.c atlas_sr1.h
- $(ICC) -c $(ICCFLAGS) -o $@ -DSREAL -I$(R1Tdir) ATL_ger.c
- ATL_sger1.o : ATL_sger1.c
-- $(sR1CC) -c $(CDEFS) $(sR1CFLAGS) -I$(R1Tdir) -o $@ -DSREAL ATL_sger1.c
-+ $(LIBTOOL) --tag=CC $(sR1CC) -c $(CDEFS) $(sR1CFLAGS) -I$(R1Tdir) -o $@ -DSREAL ATL_sger1.c
- ATL_sger1c.o : ATL_sger1.c
-- $(sR1CC) -c $(CDEFS) $(sR1CFLAGS) -I$(R1Tdir) -o $@ -DSREAL -DConj_ \
-+ $(LIBTOOL) --tag=CC $(sR1CC) -c $(CDEFS) $(sR1CFLAGS) -I$(R1Tdir) -o $@ -DSREAL -DConj_ \
- ATL_sger1.c
- ATL_sger1_dummy.o : ATL_sger1_dummy.c
-- $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DSREAL ATL_sger1_dummy.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DSREAL ATL_sger1_dummy.c
-
- res/sR1RES : xr1search force_build
- ./xr1search -p s
-@@ -177,14 +177,14 @@
- cger1tune.o : $(mySRCdir)/ger1tune.c
- $(ICC) -c $(ICCFLAGS) -o $@ -DSCPLX $(mySRCdir)/ger1tune.c
- ATL_cger.o : ATL_ger.c atlas_cr1.h
-- $(ICC) -c $(ICCFLAGS) -o $@ -DSCPLX -I$(R1Tdir) ATL_ger.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) -o $@ -DSCPLX -I$(R1Tdir) ATL_ger.c
- ATL_cger1.o : ATL_cger1.c
-- $(cR1CC) -c $(CDEFS) $(cR1CFLAGS) -I$(R1Tdir) -o $@ -DSCPLX ATL_cger1.c
-+ $(LIBTOOL) --tag=CC $(cR1CC) -c $(CDEFS) $(cR1CFLAGS) -I$(R1Tdir) -o $@ -DSCPLX ATL_cger1.c
- ATL_cger1c.o : ATL_cger1.c
-- $(cR1CC) -c $(CDEFS) $(cR1CFLAGS) -I$(R1Tdir) -o $@ -DSCPLX -DConj_ \
-+ $(LIBTOOL) --tag=CC $(cR1CC) -c $(CDEFS) $(cR1CFLAGS) -I$(R1Tdir) -o $@ -DSCPLX -DConj_ \
- ATL_cger1.c
- ATL_cger1_dummy.o : ATL_cger1_dummy.c
-- $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DSCPLX ATL_cger1_dummy.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DSCPLX ATL_cger1_dummy.c
-
- res/cR1RES : xr1search force_build
- ./xr1search -p c
-@@ -230,14 +230,14 @@
- zger1tune.o : $(mySRCdir)/ger1tune.c
- $(ICC) -c $(ICCFLAGS) -o $@ -DDCPLX $(mySRCdir)/ger1tune.c
- ATL_zger.o : ATL_ger.c atlas_zr1.h
-- $(ICC) -c $(ICCFLAGS) -o $@ -DDCPLX -I$(R1Tdir) ATL_ger.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) -o $@ -DDCPLX -I$(R1Tdir) ATL_ger.c
- ATL_zger1.o : ATL_zger1.c
-- $(zR1CC) -c $(CDEFS) $(zR1CFLAGS) -I$(R1Tdir) -o $@ -DDCPLX ATL_zger1.c
-+ $(LIBTOOL) --tag=CC $(zR1CC) -c $(CDEFS) $(zR1CFLAGS) -I$(R1Tdir) -o $@ -DDCPLX ATL_zger1.c
- ATL_zger1c.o : ATL_zger1.c
-- $(zR1CC) -c $(CDEFS) $(zR1CFLAGS) -I$(R1Tdir) -o $@ -DDCPLX -DConj_ \
-+ $(LIBTOOL) --tag=CC $(zR1CC) -c $(CDEFS) $(zR1CFLAGS) -I$(R1Tdir) -o $@ -DDCPLX -DConj_ \
- ATL_zger1.c
- ATL_zger1_dummy.o : ATL_zger1_dummy.c
-- $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DDCPLX ATL_zger1_dummy.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) -I$(R1Tdir) -o $@ -DDCPLX ATL_zger1_dummy.c
-
- res/zR1RES : xr1search force_build
- ./xr1search -p z
-diff -Nur ATLAS.orig/makes/Make.sprk ATLAS/makes/Make.sprk
---- ATLAS.orig/makes/Make.sprk 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/makes/Make.sprk 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/blas/pklevel3/sprk
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- all : lib
- lib : dlib slib zlib clib
- clean : sclean dclean cclean zclean
-diff -Nur ATLAS.orig/makes/Make.sysinfo ATLAS/makes/Make.sysinfo
---- ATLAS.orig/makes/Make.sysinfo 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/makes/Make.sysinfo 2007-08-18 13:44:42.000000000 +0100
-@@ -111,12 +111,12 @@
- ATL_cputime.c :
- cp $(mySRCdir)/ATL_cputime.c .
- ATL_cputime.o : ATL_cputime.c
-- $(ICC) -c $(ICCFLAGS) ATL_cputime.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) ATL_cputime.c
-
- ATL_walltime.c :
- cp $(mySRCdir)/ATL_walltime.c .
- ATL_walltime.o : ATL_walltime.c
-- $(ICC) -c $(ICCFLAGS) ATL_walltime.c
-+ $(LIBTOOL) --tag=CC $(ICC) -c $(ICCFLAGS) ATL_walltime.c
-
- ATL_Xwalltime.o : ATL_walltime.o
- $(XCC) $(XCCFLAGS) -c -o ATL_Xwalltime.o ATL_walltime.c
-diff -Nur ATLAS.orig/makes/Make.tstsrc ATLAS/makes/Make.tstsrc
---- ATLAS.orig/makes/Make.tstsrc 2007-08-10 16:57:42.000000000 +0100
-+++ ATLAS/makes/Make.tstsrc 2007-08-18 13:44:42.000000000 +0100
-@@ -1,6 +1,8 @@
- include Make.inc
- mySRCdir = $(SRCdir)/src/testing
-
-+include $(INCSdir)/gentoo_libtool.inc
-+
- INCdep = $(INCSdir)/atlas_misc.h $(INCSdir)/atlas_f77.h \
- $(INCSdir)/atlas_tst.h
- INCdep1 = $(INCSdir)/atlas_misc.h $(INCSdir)/atlas_tst.h
-diff -Nur ATLAS.orig/Make.top ATLAS/Make.top
---- ATLAS.orig/Make.top 2007-08-10 16:57:40.000000000 +0100
-+++ ATLAS/Make.top 2007-08-18 13:44:42.000000000 +0100
-@@ -24,6 +24,75 @@
- - fgrep -e fault -e FAULT -e error -e ERROR -e fail -e FAIL \
- bin/sanity.out
- @ echo "DONE"
-+
-+
-+shared: INSTALLER = cp
-+shared: libatlas.so libblas.so libcblas.so
-+
-+shared-strip: INSTALLER = install -s
-+shared-strip: libatlas.so libblas.so libcblas.so
-+
-+ptshared: INSTALLER = cp
-+ptshared: libptblas.so libptcblas.so
-+
-+ptshared-strip: INSTALLER = install -s
-+ptshared-strip: libptblas.so libptcblas.so
-+
-+libatlas.so:
-+ mkdir -p gentoo/libs
-+ @echo
-+ @echo Linking a really big library, please be patient...
-+ @echo
-+ cd gentoo/libatlas.a ; \
-+ libtool --mode=link --tag=CC $(CC) $(LIBS) -o libatlas.la \
-+ *.lo -rpath /usr/$(LIBDIR) ; \
-+ libtool --mode=install $(INSTALLER) libatlas.la $(BLDdir)/gentoo/libs
-+
-+libblas.so:
-+ cd gentoo/libf77blas.a ; \
-+ libtool --mode=link --tag=CC $(CC) $(F77SYSLIB) -o libblas.la \
-+ ../libs/libatlas.la *.lo -rpath $(RPATH); \
-+ rm -f .libs/libblas.so.0.0.0; \
-+ $(CC) -shared .libs/*.o $(LDFLAGS) $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.so \
-+ -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \
-+ libtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/libs
-+
-+libcblas.so:
-+ cd gentoo/libcblas.a ; \
-+ libtool --mode=link --tag=CC $(CC) -o libcblas.la \
-+ ../libs/libatlas.la *.lo -rpath $(RPATH) ; \
-+ rm -f .libs/libcblas.so.0.0.0; \
-+ $(CC) -shared .libs/*.o $(LDFLAGS) $(BLDdir)/gentoo/libs/libatlas.so \
-+ -Wl,-soname -Wl,libcblas.so.0 -o .libs/libcblas.so.0.0.0; \
-+ libtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/libs
-+
-+libptblas.so:
-+ mkdir -p gentoo/threaded-libs
-+ cd gentoo/libptf77blas.a ; \
-+ libtool --mode=link --tag=CC $(CC) $(F77SYSLIB) -o libblas.la \
-+ ../libs/libatlas.la *.lo -rpath $(RPATH); \
-+ rm -f .libs/libblas.so.0.0.0; \
-+ $(CC) -shared .libs/*.o $(F77SYSLIB) $(BLDdir)/gentoo/libs/libatlas.so \
-+ -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \
-+ libtool --mode=install $(INSTALLER) libblas.la $(BLDdir)/gentoo/threaded-libs
-+
-+libptcblas.so:
-+ cd gentoo/libptcblas.a ; \
-+ libtool --mode=link --tag=CC $(CC) -o libcblas.la \
-+ ../libs/libatlas.la *.lo -rpath $(RPATH); \
-+ rm -f .libs/libcblas.so.0.0.0; \
-+ $(CC) -shared .libs/*.o $(BLDdir)/gentoo/libs/libatlas.so \
-+ -Wl,-soname -Wl,libcblas.so.0 -o .libs/libcblas.so.0.0.0; \
-+ libtool --mode=install $(INSTALLER) libcblas.la $(BLDdir)/gentoo/threaded-libs
-+
-+liblapack.so:
-+ mkdir -p gentoo/libs
-+ cd gentoo/liblapack.a ; \
-+ libtool --mode=link --tag=CC $(CC) $(F77SYSLIB) -o liblapack.la \
-+ *.lo -rpath $(RPATH) -lblas -lcblas -latlas ; \
-+ libtool --mode=install $(INSTALLER) liblapack.la $(BLDdir)/gentoo/libs
-+
-+
- sanity_test :
- @ echo "BUILDING TESTERS:"
- cd bin ; $(MAKE) sanity_test
-diff -Nur ATLAS.orig/tune/blas/gemm/emit_mm.c ATLAS/tune/blas/gemm/emit_mm.c
---- ATLAS.orig/tune/blas/gemm/emit_mm.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/gemm/emit_mm.c 2007-08-18 13:44:42.000000000 +0100
-@@ -2606,6 +2606,12 @@
- assert(fp);
-
- fprintf(fp, "include ../Make.inc\n\n");
-+ fprintf(fp, "ICC:=$(LIBTOOL) --tag=CC $(ICC)\n\n");
-+ fprintf(fp, "SMC:=$(LIBTOOL) --tag=CC $(SMC)\n\n");
-+ fprintf(fp, "DMC:=$(LIBTOOL) --tag=CC $(DMC)\n\n");
-+ fprintf(fp, "SKC:=$(LIBTOOL) --tag=CC $(SKC)\n\n");
-+ fprintf(fp, "DKC:=$(LIBTOOL) --tag=CC $(DKC)\n\n");
-+ fprintf(fp, "XCC:=$(LIBTOOL) --tag=CC $(XCC)\n\n");
- fprintf(fp, "CDEFS2 = $(CDEFS)");
- for (i=0; i < 3; i++)
- if (cp[i]) fprintf(fp, " -DATL_UCLEAN%c", cwh[i]);
-@@ -2685,7 +2691,7 @@
- wp->NBs[k], wp->imult, wp->fixed, betas[j]);
- else sprintf(fnam, "ATL_%cNBmm_b%c", pre, betas[j]);
- fprintf(fp, "%s.o : %s.c \n", fnam, fnam);
-- fprintf(fp, "\t%s $(CDEFS2) -DATL_BETA=%c -c %s %s.c\n",
-+ fprintf(fp, "\t$(LIBTOOL) --tag=CC %s $(CDEFS2) -DATL_BETA=%c -c %s %s.c\n",
- wp->CC, betas[j], wp->CCFLAGS, fnam);
- }
- }
-diff -Nur ATLAS.orig/tune/blas/gemv/mvsearch.c ATLAS/tune/blas/gemv/mvsearch.c
---- ATLAS.orig/tune/blas/gemv/mvsearch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/gemv/mvsearch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -512,7 +512,7 @@
- fprintf(fp, "include Make.inc\n\n");
-
- if (ccN[0] == '\0') fprintf(fp, "MVNCC = $(%cKC)\n", UPR);
-- else fprintf(fp, "MVNCC = %s\n", ccN);
-+ else fprintf(fp, "MVNCC = $(LIBTOOL) --tag=CC %s\n", ccN);
- if (ccN[0] == '\0' && ccflagsN[0] != '\0')
- fprintf(fp, "MVNFLAGS = $(CDEFS) $(%cKCFLAGS) %s -D%s\n",
- UPR, ccflagsN, typ);
-@@ -526,7 +526,7 @@
- }
-
- if (ccT[0] == '\0') fprintf(fp, "MVTCC = $(%cKC)\n", UPR);
-- else fprintf(fp, "MVTCC = %s\n", ccT);
-+ else fprintf(fp, "MVTCC = $(LIBTOOL) --tag=CC %s\n", ccT);
- if (ccT[0] == '\0' && ccflagsT[0] != '\0')
- fprintf(fp, "MVTFLAGS = $(CDEFS) $(%cKCFLAGS) %s -D%s\n",
- UPR, ccflagsT, typ);
-@@ -540,7 +540,7 @@
- }
-
- if (ccS[0] == '\0') fprintf(fp, "MVSCC = $(%cKC)\n", UPR);
-- else fprintf(fp, "MVSCC = %s\n", ccS);
-+ else fprintf(fp, "MVSCC = $(LIBTOOL) --tag=CC %s\n", ccS);
- if (ccS[0] == '\0' && ccflagsS[0] != '\0')
- fprintf(fp, "MVSFLAGS = $(CDEFS) $(%cKCFLAGS) %s -D%s",
- UPR, ccflagsS, typ);
-diff -Nur ATLAS.orig/tune/blas/level1/asumsrch.c ATLAS/tune/blas/level1/asumsrch.c
---- ATLAS.orig/tune/blas/level1/asumsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/asumsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -180,7 +181,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/axpbysrch.c ATLAS/tune/blas/level1/axpbysrch.c
---- ATLAS.orig/tune/blas/level1/axpbysrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/axpbysrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -188,7 +189,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/axpysrch.c ATLAS/tune/blas/level1/axpysrch.c
---- ATLAS.orig/tune/blas/level1/axpysrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/axpysrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -186,7 +187,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/copysrch.c ATLAS/tune/blas/level1/copysrch.c
---- ATLAS.orig/tune/blas/level1/copysrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/copysrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -180,7 +181,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/cpscsrch.c ATLAS/tune/blas/level1/cpscsrch.c
---- ATLAS.orig/tune/blas/level1/cpscsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/cpscsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -186,7 +187,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/dotsrch.c ATLAS/tune/blas/level1/dotsrch.c
---- ATLAS.orig/tune/blas/level1/dotsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/dotsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -161,6 +161,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -182,7 +183,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/iamaxsrch.c ATLAS/tune/blas/level1/iamaxsrch.c
---- ATLAS.orig/tune/blas/level1/iamaxsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/iamaxsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -179,7 +180,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/nrm2srch.c ATLAS/tune/blas/level1/nrm2srch.c
---- ATLAS.orig/tune/blas/level1/nrm2srch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/nrm2srch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -180,7 +181,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/rotsrch.c ATLAS/tune/blas/level1/rotsrch.c
---- ATLAS.orig/tune/blas/level1/rotsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/rotsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -189,7 +190,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/scalsrch.c ATLAS/tune/blas/level1/scalsrch.c
---- ATLAS.orig/tune/blas/level1/scalsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/scalsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -187,7 +188,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/setsrch.c ATLAS/tune/blas/level1/setsrch.c
---- ATLAS.orig/tune/blas/level1/setsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/setsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -181,7 +182,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
-diff -Nur ATLAS.orig/tune/blas/level1/swapsrch.c ATLAS/tune/blas/level1/swapsrch.c
---- ATLAS.orig/tune/blas/level1/swapsrch.c 2007-08-10 16:58:24.000000000 +0100
-+++ ATLAS/tune/blas/level1/swapsrch.c 2007-08-18 13:44:42.000000000 +0100
-@@ -159,6 +159,7 @@
- FILE *fpin;
- FILENODE *fbase, *fn, *fp=NULL;
- char ln[512], rout[256], auth[256], cc[256], ccflags[256];
-+ char temp[256];
- char *pcc, *pccflags;
- int i, n, ID, alpha, beta, incX, incY;
-
-@@ -180,7 +181,10 @@
- assert(fgets(ccflags, 512, fpin) != NULL);
- FixFlags(cc);
- FixFlags(ccflags);
-- pcc = cc;
-+ /* Gentoo pcc = cc; */
-+ strcpy(temp, "$(LIBTOOL) --tag=CC ");
-+ strcat(temp, cc);
-+ pcc = temp;
- pccflags = ccflags;
- }
- else pcc = pccflags = NULL;
diff --git a/sci-libs/blas-atlas/files/atlas-asm-gentoo.patch b/sci-libs/blas-atlas/files/atlas-asm-gentoo.patch
deleted file mode 100644
index ca5a7a8ee..000000000
--- a/sci-libs/blas-atlas/files/atlas-asm-gentoo.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur ATLAS/include/contrib/camm_dpa.h ATLAS-new/include/contrib/camm_dpa.h
---- ATLAS/include/contrib/camm_dpa.h 2006-09-09 15:33:15.000000000 -0400
-+++ ATLAS-new/include/contrib/camm_dpa.h 2006-09-26 10:18:24.000000000 -0400
-@@ -1619,7 +1619,7 @@
- #if defined(SCPLX) || (defined(DCPLX) && defined(ATL_SSE2))
- ,"m" (w)
- #endif
-- :"ax","bx","cx","dx","si","di");
-+ :"ax","cx","dx","si","di");
-
-
- }
diff --git a/sci-libs/blas-atlas/files/blas.pc.in b/sci-libs/blas-atlas/files/blas.pc.in
deleted file mode 100644
index 8c0eefe28..000000000
--- a/sci-libs/blas-atlas/files/blas.pc.in
+++ /dev/null
@@ -1,11 +0,0 @@
-prefix=/usr
-exec_prefix=${prefix}
-libdir=/usr/@LIBDIR@
-includedir=${prefix}/include
-
-Name: blas
-Description: Automatically Tuned Linear Algebra Software F77 BLAS implementation
-Version: @PV@
-URL: http://math-atlas.sourceforge.net/
-Libs: -L${libdir} -lblas -latlas @THREADLIBS@
-Libs.private: @EXTLIBS@
diff --git a/sci-libs/blas-atlas/files/cblas.pc.in b/sci-libs/blas-atlas/files/cblas.pc.in
deleted file mode 100644
index d40314043..000000000
--- a/sci-libs/blas-atlas/files/cblas.pc.in
+++ /dev/null
@@ -1,12 +0,0 @@
-prefix=/usr
-exec_prefix=${prefix}
-libdir=/usr/@LIBDIR@
-includedir=${prefix}/include
-
-Name: cblas
-Description: Automatically Tuned Linear Algebra Software C BLAS implementation
-Version: @PV@
-URL: http://math-atlas.sourceforge.net/
-Libs: -L${libdir} -lcblas -latlas
-Libs.private: @EXTLIBS@
-Cflags: -I${includedir}
diff --git a/sci-libs/blas-atlas/files/digest-blas-atlas-3.7.37 b/sci-libs/blas-atlas/files/digest-blas-atlas-3.7.37
deleted file mode 100644
index a1918b9e2..000000000
--- a/sci-libs/blas-atlas/files/digest-blas-atlas-3.7.37
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5c3fb9a4c74e8426105558a23b2215ff atlas3.7.37.tar.bz2 2282682
-RMD160 33f728d2d25c396179748c43aeff9ab71107ddc8 atlas3.7.37.tar.bz2 2282682
-SHA256 bbc56b6355c07666d8021f640da00a35838e87ec4cb4cf52bdbb25336635fd65 atlas3.7.37.tar.bz2 2282682
diff --git a/sci-libs/blas-atlas/files/eselect.blas.atlas b/sci-libs/blas-atlas/files/eselect.blas.atlas
deleted file mode 100644
index a6f69f03d..000000000
--- a/sci-libs/blas-atlas/files/eselect.blas.atlas
+++ /dev/null
@@ -1,4 +0,0 @@
-blas/atlas/libblas.so /usr/@LIBDIR@/libblas.so
-blas/atlas/libblas.so.0 /usr/@LIBDIR@/libblas.so.0
-blas/atlas/libblas.a /usr/@LIBDIR@/libblas.a
-../blas/atlas/blas.pc /usr/@LIBDIR@/pkgconfig/blas.pc
diff --git a/sci-libs/blas-atlas/files/eselect.blas.threaded-atlas b/sci-libs/blas-atlas/files/eselect.blas.threaded-atlas
deleted file mode 100644
index 501e89e07..000000000
--- a/sci-libs/blas-atlas/files/eselect.blas.threaded-atlas
+++ /dev/null
@@ -1,4 +0,0 @@
-blas/threaded-atlas/libblas.so /usr/@LIBDIR@/libblas.so
-blas/threaded-atlas/libblas.so.0 /usr/@LIBDIR@/libblas.so.0
-blas/threaded-atlas/libblas.a /usr/@LIBDIR@/libblas.a
-../blas/threaded-atlas/blas.pc /usr/@LIBDIR@/pkgconfig/blas.pc
diff --git a/sci-libs/blas-atlas/files/eselect.cblas.atlas b/sci-libs/blas-atlas/files/eselect.cblas.atlas
deleted file mode 100644
index a8e0b74fb..000000000
--- a/sci-libs/blas-atlas/files/eselect.cblas.atlas
+++ /dev/null
@@ -1,5 +0,0 @@
-blas/atlas/libcblas.so /usr/@LIBDIR@/libcblas.so
-blas/atlas/libcblas.so.0 /usr/@LIBDIR@/libcblas.so.0
-blas/atlas/libcblas.a /usr/@LIBDIR@/libcblas.a
-../blas/atlas/cblas.pc /usr/@LIBDIR@/pkgconfig/cblas.pc
-atlas/cblas.h /usr/include/cblas.h
diff --git a/sci-libs/blas-atlas/files/eselect.cblas.threaded-atlas b/sci-libs/blas-atlas/files/eselect.cblas.threaded-atlas
deleted file mode 100644
index 1af2a211e..000000000
--- a/sci-libs/blas-atlas/files/eselect.cblas.threaded-atlas
+++ /dev/null
@@ -1,5 +0,0 @@
-blas/threaded-atlas/libcblas.so /usr/@LIBDIR@/libcblas.so
-blas/threaded-atlas/libcblas.so.0 /usr/@LIBDIR@/libcblas.so.0
-blas/threaded-atlas/libcblas.so.0 /usr/@LIBDIR@/libcblas.a
-../blas/threaded-atlas/cblas.pc /usr/@LIBDIR@/pkgconfig/cblas.pc
-cblas/cblas.h /usr/include/cblas.h
diff --git a/sci-libs/blas-atlas/files/war b/sci-libs/blas-atlas/files/war
deleted file mode 100644
index 2093f033a..000000000
--- a/sci-libs/blas-atlas/files/war
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/bash
-#
-# war -- wrapper for the archiver
-#
-# Executed by ATLAS build as:
-# full_path/war ARCHIVER ARFLAGS LIBNAME.a OBJS.lo
-
-TOPDIR=$(echo $0 | sed 's/\(.*\)\/.*/\1/')
-PWD=$(pwd)
-
-ARCHIVER=$1
-LIBRARY=$(echo $3 | sed 's/.*\/\(.*\)/\1/')
-OBJ_DIR=${TOPDIR}/gentoo/$LIBRARY
-
-if [ ! -x $OBJ_DIR ]; then mkdir -p ${OBJ_DIR}/.libs; fi
-
-$ARCHIVER $@
-
-shift 3
-for obj in $@ ; do
- lobj=$(echo $obj | sed 's/\.o/\.lo/')
- ln -sf ${PWD}/$obj ${OBJ_DIR}/$obj
- ln -sf ${PWD}/$lobj ${OBJ_DIR}/$lobj
- ln -sf ${PWD}/.libs/$obj ${OBJ_DIR}/.libs/$obj
-done
-
diff --git a/sci-libs/blas-atlas/metadata.xml b/sci-libs/blas-atlas/metadata.xml
deleted file mode 100644
index dc7cebf64..000000000
--- a/sci-libs/blas-atlas/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-ATLAS is an approach for the automatic generation and optimization of
-numerical software. Currently ATLAS supplies optimized versions for
-the complete set of linear algebra kernels known as the Basic Linear
-Algebra Subroutines (BLAS), and a subset of the linear algebra
-routines in the LAPACK library.
-The libraries in this package contain BLAS FORTRAN77 and C
-implementations
-</longdescription>
-</pkgmetadata>
diff --git a/sci-libs/camd/Manifest b/sci-libs/camd/Manifest
deleted file mode 100644
index 72098a26b..000000000
--- a/sci-libs/camd/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-AUX camd-2.2.0-autotools.patch 2035 RMD160 31b6827ccafc0a3ff4b6d869f306321cd13acd4b SHA1 82900c21a0c91ff54096e8cffec3254c9c6d7e3e SHA256 97e9a314a21526e77886948507e1e200724d14e77d93a2d85330900cd4763bf5
-MD5 0a5ebecb488f868075a65be5246fb76f files/camd-2.2.0-autotools.patch 2035
-RMD160 31b6827ccafc0a3ff4b6d869f306321cd13acd4b files/camd-2.2.0-autotools.patch 2035
-SHA256 97e9a314a21526e77886948507e1e200724d14e77d93a2d85330900cd4763bf5 files/camd-2.2.0-autotools.patch 2035
-DIST CAMD-2.2.0.tar.gz 227593 RMD160 ac91f020edac556d19fb23a5f88dfd0837f85b0a SHA1 02d323da119d3203714b3c1948f62c9813ba39a7 SHA256 a8a2254335e7dfbca7e19904fdf1a5e6149c41e141356d08121e6f806b209f45
-EBUILD camd-2.2.0.ebuild 900 RMD160 8d366c3813f2aa2aaa5f64f751861cb89b910f42 SHA1 08640b607f44539225b4abb58df19f1aff4a7a6f SHA256 50efc44995e12b4a69548019771565c12a7a7d3c22bd9aa3e0a5350e3451f31b
-MD5 bd77ea3db566c1cc08e086bc702b0c5b camd-2.2.0.ebuild 900
-RMD160 8d366c3813f2aa2aaa5f64f751861cb89b910f42 camd-2.2.0.ebuild 900
-SHA256 50efc44995e12b4a69548019771565c12a7a7d3c22bd9aa3e0a5350e3451f31b camd-2.2.0.ebuild 900
-MD5 7fae9c445b0db21953459aca75852d38 files/digest-camd-2.2.0 232
-RMD160 1ada9cab0094ecf3729258cf86f80f8a0993e24b files/digest-camd-2.2.0 232
-SHA256 098441680ce138f32e917c549809eb5faba0cbac5e59c5bbcf386f4446a06e25 files/digest-camd-2.2.0 232
diff --git a/sci-libs/camd/camd-2.2.0.ebuild b/sci-libs/camd/camd-2.2.0.ebuild
deleted file mode 100644
index 30ef6a7ac..000000000
--- a/sci-libs/camd/camd-2.2.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools eutils
-
-MY_PN=CAMD
-DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/camd"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc"
-DEPEND="sci-libs/ufconfig"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_unpack() {
- unpack "${A}"
- cd "${S}"
- epatch "${FILESDIR}"/${P}-autotools.patch
- eautoreconf
-}
-
-src_test() {
- cd "${S}"/Demo
- emake test || die "emake test failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README.txt Doc/ChangeLog || die "dodoc failed"
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins Doc/CAMD_UserGuide.pdf || die "pdf install failed"
- fi
-}
diff --git a/sci-libs/camd/files/camd-2.2.0-autotools.patch b/sci-libs/camd/files/camd-2.2.0-autotools.patch
deleted file mode 100644
index f80e16546..000000000
--- a/sci-libs/camd/files/camd-2.2.0-autotools.patch
+++ /dev/null
@@ -1,68 +0,0 @@
---- Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am 2007-09-21 15:21:37.353444654 +0100
-@@ -0,0 +1,3 @@
-+SUBDIRS = Demo Source
-+EXTRA_DIST = README.txt
-+include_HEADERS = Include/camd.h Include/camd_internal.h
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-21 15:22:18.395783523 +0100
-@@ -0,0 +1,12 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(camd, 2.2.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CONFIG_FILES([Source/Makefile
-+ Demo/Makefile
-+ Makefile])
-+AC_OUTPUT
---- Source/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am 2007-09-21 15:25:49.019786301 +0100
-@@ -0,0 +1,14 @@
-+CAMDCSRC = camd_aat.c camd_1.c camd_2.c camd_dump.c camd_postorder.c camd_defaults.c \
-+ camd_order.c camd_control.c camd_info.c camd_valid.c camd_preprocess.c
-+
-+lib_LTLIBRARIES = libcamd.la
-+noinst_LTLIBRARIES = libcamdi.la libcamdl.la
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+libcamdi_la_SOURCES = $(CAMDCSRC)
-+libcamdi_la_CPPFLAGS = $(AM_CPPFLAGS) -DDINT
-+libcamdl_la_SOURCES = $(CAMDCSRC)
-+libcamdl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
-+
-+libcamd_la_SOURCES = camd_global.c
-+libcamd_la_LIBADD = libcamdl.la libcamdi.la
---- Demo/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am 2007-09-21 15:24:43.448049581 +0100
-@@ -0,0 +1,27 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+AM_LDFLAGS = -lm
-+check_PROGRAMS = \
-+ camd_demo \
-+ camd_l_demo \
-+ camd_demo2 \
-+ camd_simple
-+
-+LDADD = $(top_builddir)/Source/libcamd.la
-+
-+camd_demo_SOURCES = camd_demo.c
-+camd_l_demo_SOURCES = camd_l_demo.c
-+camd_demo2_SOURCES = camd_demo2.c
-+camd_simple_SOURCES = camd_simple.c
-+
-+test: $(check_PROGRAMS)
-+ @for i in $(check_PROGRAMS); do \
-+ echo "Testing $$i"; \
-+ ./$$i > my_$$i.out; \
-+ if ! diff $$i.out my_$$i.out; then \
-+ echo "Test $$i failed!"; \
-+ exit 1; \
-+ fi \
-+ done;
-+
-+clean-local:
-+ rm -f my*.out
diff --git a/sci-libs/camd/files/digest-camd-2.2.0 b/sci-libs/camd/files/digest-camd-2.2.0
deleted file mode 100644
index 9989226e4..000000000
--- a/sci-libs/camd/files/digest-camd-2.2.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 d80d35bbdb113da3d79e8b52d7b32144 CAMD-2.2.0.tar.gz 227593
-RMD160 ac91f020edac556d19fb23a5f88dfd0837f85b0a CAMD-2.2.0.tar.gz 227593
-SHA256 a8a2254335e7dfbca7e19904fdf1a5e6149c41e141356d08121e6f806b209f45 CAMD-2.2.0.tar.gz 227593
diff --git a/sci-libs/ccolamd/Manifest b/sci-libs/ccolamd/Manifest
deleted file mode 100644
index ac7d166f2..000000000
--- a/sci-libs/ccolamd/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-AUX ccolamd-2.7.0-autotools.patch 1783 RMD160 516646a84fa3e32323b4996165b3bb6e25d5f416 SHA1 1d8ed1a5a3ca7b67e8abbdc392ee7baf152d2412 SHA256 80ea61f926d749def7ca3bf1a57666028e60b209e683766906722d546445170a
-MD5 1697bd49063912208c11f660c5392215 files/ccolamd-2.7.0-autotools.patch 1783
-RMD160 516646a84fa3e32323b4996165b3bb6e25d5f416 files/ccolamd-2.7.0-autotools.patch 1783
-SHA256 80ea61f926d749def7ca3bf1a57666028e60b209e683766906722d546445170a files/ccolamd-2.7.0-autotools.patch 1783
-AUX colamd-2.7.0-autotools.patch 454 RMD160 3892d5ebb9a51d2e8dc2fd46630283d678c8efff SHA1 3fcfb357063fe513f80115e7e8b13ab8e4dab704 SHA256 81da0b26c3bfb8f5a52e127f6236862b3fbd550e07f28cd60a86e08c2e5fbcf9
-MD5 867609e39f435dd8465474c1b9707433 files/colamd-2.7.0-autotools.patch 454
-RMD160 3892d5ebb9a51d2e8dc2fd46630283d678c8efff files/colamd-2.7.0-autotools.patch 454
-SHA256 81da0b26c3bfb8f5a52e127f6236862b3fbd550e07f28cd60a86e08c2e5fbcf9 files/colamd-2.7.0-autotools.patch 454
-DIST CCOLAMD-2.7.0.tar.gz 62566 RMD160 e2eb0e8a70e76f0b9e96373b42124ed5b6e6bcec SHA1 6486c30cfdc83814e2230dea022aff9354f65943 SHA256 b3244c3072516ce1b6c37cd57190dc514c6d8b937431a4addbbc3a4fd1ef3711
-EBUILD ccolamd-2.7.0.ebuild 777 RMD160 6e19b50e536c68256a8d6a417ae7f4aa31d9f370 SHA1 9f1d6ba427119c7af762ee9390eadbb01b1726d9 SHA256 14c1921d3b7126d4c5e0cb87a2a50d36392f642b211e81de74796ecbd1d73f93
-MD5 d15e6860dcab53fd8e011f373c1dc20d ccolamd-2.7.0.ebuild 777
-RMD160 6e19b50e536c68256a8d6a417ae7f4aa31d9f370 ccolamd-2.7.0.ebuild 777
-SHA256 14c1921d3b7126d4c5e0cb87a2a50d36392f642b211e81de74796ecbd1d73f93 ccolamd-2.7.0.ebuild 777
-MD5 1a05ba1c76408ed13ccb37018b7edf6e files/digest-ccolamd-2.7.0 238
-RMD160 6c80849f16c0f62ce8f91eef867a14b469a97d0c files/digest-ccolamd-2.7.0 238
-SHA256 b2c3de9fff77b227a852a57bd351c1d5387239c2f1d4fdc42b65b6879cb5eece files/digest-ccolamd-2.7.0 238
diff --git a/sci-libs/ccolamd/ccolamd-2.7.0.ebuild b/sci-libs/ccolamd/ccolamd-2.7.0.ebuild
deleted file mode 100644
index 03b4dec79..000000000
--- a/sci-libs/ccolamd/ccolamd-2.7.0.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools eutils
-
-MY_PN=CCOLAMD
-DESCRIPTION="Column approximate minimum degree ordering algorithm"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/ccolamd"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND="sci-libs/ufconfig"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/${P}-autotools.patch
- eautoreconf
-}
-
-src_test() {
- cd "${S}"/Demo
- emake test || die "emake test failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README.txt Doc/ChangeLog || die "dodoc failed"
-}
diff --git a/sci-libs/ccolamd/files/ccolamd-2.7.0-autotools.patch b/sci-libs/ccolamd/files/ccolamd-2.7.0-autotools.patch
deleted file mode 100644
index 755c8b7c0..000000000
--- a/sci-libs/ccolamd/files/ccolamd-2.7.0-autotools.patch
+++ /dev/null
@@ -1,60 +0,0 @@
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-21 16:03:04.073238283 +0100
-@@ -0,0 +1,13 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(ccolamd, 2.7.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CONFIG_FILES([
-+ Source/Makefile
-+ Demo/Makefile
-+ Makefile])
-+AC_OUTPUT
---- Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am 2007-09-21 16:03:31.218785219 +0100
-@@ -0,0 +1,3 @@
-+SUBDIRS = Demo Source
-+EXTRA_DIST = Doc/ChangeLog README.txt
-+include_HEADERS = Include/ccolamd.h
---- Source/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am 2007-09-21 16:13:29.964905816 +0100
-@@ -0,0 +1,10 @@
-+AM_CPPFLAGS = -I$(top_builddir)/Include
-+lib_LTLIBRARIES = libccolamd.la
-+noinst_LTLIBRARIES = libccolamdl.la libccolamdi.la
-+
-+libccolamdl_la_SOURCES = ccolamd.c
-+libccolamdl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
-+libccolamdi_la_SOURCES = ccolamd.c
-+
-+libccolamd_la_SOURCES = ccolamd_global.c
-+libccolamd_la_LIBADD = libccolamdl.la libccolamdi.la
---- Demo/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am 2007-09-21 16:15:45.513372469 +0100
-@@ -0,0 +1,22 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+check_PROGRAMS = \
-+ ccolamd_example \
-+ ccolamd_l_example
-+
-+LDADD = $(top_builddir)/Source/libccolamd.la -lm
-+ccolamd_example_SOURCES = ccolamd_example.c
-+ccolamd_l_example_SOURCES = ccolamd_l_example.c
-+
-+test: $(check_PROGRAMS)
-+ @for i in $(check_PROGRAMS); do \
-+ echo "Testing $$i"; \
-+ ./$$i > my_$$i.out; \
-+ if ! diff $$i.out my_$$i.out; then \
-+ echo "Test $$i failed!"; \
-+ exit 1; \
-+ fi \
-+ done;
-+
-+clean-local:
-+ rm -f my*.out
diff --git a/sci-libs/ccolamd/files/colamd-2.7.0-autotools.patch b/sci-libs/ccolamd/files/colamd-2.7.0-autotools.patch
deleted file mode 100644
index adceddc06..000000000
--- a/sci-libs/ccolamd/files/colamd-2.7.0-autotools.patch
+++ /dev/null
@@ -1,16 +0,0 @@
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-21 16:03:04.073238283 +0100
-@@ -0,0 +1,13 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(ccolamd, 2.7.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CONFIG_FILES([
-+ Source/Makefile
-+ Demo/Makefile
-+ Makefile])
-+AC_OUTPUT
diff --git a/sci-libs/ccolamd/files/digest-ccolamd-2.7.0 b/sci-libs/ccolamd/files/digest-ccolamd-2.7.0
deleted file mode 100644
index 4381cee8b..000000000
--- a/sci-libs/ccolamd/files/digest-ccolamd-2.7.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 8cab3137260f4514eafd2c62ea4045ea CCOLAMD-2.7.0.tar.gz 62566
-RMD160 e2eb0e8a70e76f0b9e96373b42124ed5b6e6bcec CCOLAMD-2.7.0.tar.gz 62566
-SHA256 b3244c3072516ce1b6c37cd57190dc514c6d8b937431a4addbbc3a4fd1ef3711 CCOLAMD-2.7.0.tar.gz 62566
diff --git a/sci-libs/cgal-python/Manifest b/sci-libs/cgal-python/Manifest
deleted file mode 100644
index 1276d4c44..000000000
--- a/sci-libs/cgal-python/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-DIST cgal-python-0.9.1.tar.gz 146703 RMD160 e52f352b359678132db3019ed2d5edec57dd93a3 SHA1 38d08c28ac31eb2f84289a7e2487c49b2575b11f SHA256 507608cf34e6bdee77fdc0aaa753a2d882a8e1f36fb2531bc52a44774bc902e1
-EBUILD cgal-python-0.9.1.ebuild 1107 RMD160 5535aa19d07856cf7a17e8d99ead8e5b5dd16cec SHA1 92887ad601aa5a5361a77a7a3756275883bc81dc SHA256 370c1847ff7deb0eed3e5064cc76bbccfb80fde54dc7b2f8c1f258f30a7b963e
-MD5 8b70c2f8a269312aa01ea850d1fa26ba cgal-python-0.9.1.ebuild 1107
-RMD160 5535aa19d07856cf7a17e8d99ead8e5b5dd16cec cgal-python-0.9.1.ebuild 1107
-SHA256 370c1847ff7deb0eed3e5064cc76bbccfb80fde54dc7b2f8c1f258f30a7b963e cgal-python-0.9.1.ebuild 1107
-MISC metadata.xml 169 RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d SHA1 0c953712f9b97d5ab3f95ae71997ffbc96c4007d SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180
-MD5 710d6aa631e09429775457ff1d26b14e metadata.xml 169
-RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d metadata.xml 169
-SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180 metadata.xml 169
-MD5 892875192ee722b10dbd56dc7b402378 files/digest-cgal-python-0.9.1 253
-RMD160 f7bd3ed27dbc7bbe7721ff811e0085aa381e7765 files/digest-cgal-python-0.9.1 253
-SHA256 c6b74b654cb72e5f6d0b08bd03627006cb63a503418e2de8862e5d9a9d1bdd2d files/digest-cgal-python-0.9.1 253
diff --git a/sci-libs/cgal-python/cgal-python-0.9.1.ebuild b/sci-libs/cgal-python/cgal-python-0.9.1.ebuild
deleted file mode 100644
index 64ee76434..000000000
--- a/sci-libs/cgal-python/cgal-python-0.9.1.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit python toolchain-funcs
-
-DESCRIPTION="Provide Python bindings for the CGAL library"
-HOMEPAGE="http://cgal-python.gforge.inria.fr/"
-SRC_URI="http://gforge.inria.fr/frs/download.php/945/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE="examples"
-
-DEPEND="sci-libs/cgal"
-RDEPEND="sci-libs/cgal"
-
-src_unpack(){
- python_version
- unpack "${A}"
- cd "${S}"
- # include python header needed by boost
- for i in $(find ./bindings/ -name Makefile); do
- sed "s:-I../..:-I/usr/include/python${PYVER} -I../..:g" -i $i
- sed "s:@g++:$(tc-getCXX) -fno-strict-aliasing:g" -i $i
- done
-}
-
-src_compile(){
- CGAL_MAKEFILE=/usr/share/CGAL/makefile emake
-}
-
-src_install(){
- CGAL_MAKEFILE=/usr/share/CGAL/makefile emake package
- pylibdir="$(${python} -c 'from distutils.sysconfig import get_python_lib;print get_python_lib()')"
- dodir "${pylibdir}"
- cp -r cgal_package/CGAL "${D}/${pylibdir}"
- if use example; then
- dodir /usr/share/doc/${P}
- cp -r ./test "${D}/usr/share/doc/${P}"
- fi
-}
diff --git a/sci-libs/cgal-python/files/digest-cgal-python-0.9.1 b/sci-libs/cgal-python/files/digest-cgal-python-0.9.1
deleted file mode 100644
index ae4b3e943..000000000
--- a/sci-libs/cgal-python/files/digest-cgal-python-0.9.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 333243df2f1c7f90cf9d8122a9f56c1a cgal-python-0.9.1.tar.gz 146703
-RMD160 e52f352b359678132db3019ed2d5edec57dd93a3 cgal-python-0.9.1.tar.gz 146703
-SHA256 507608cf34e6bdee77fdc0aaa753a2d882a8e1f36fb2531bc52a44774bc902e1 cgal-python-0.9.1.tar.gz 146703
diff --git a/sci-libs/cgal-python/metadata.xml b/sci-libs/cgal-python/metadata.xml
deleted file mode 100644
index 3190fbf9c..000000000
--- a/sci-libs/cgal-python/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-geosciences</herd>
-</pkgmetadata>
diff --git a/sci-libs/cgal/Manifest b/sci-libs/cgal/Manifest
deleted file mode 100644
index 235083e1c..000000000
--- a/sci-libs/cgal/Manifest
+++ /dev/null
@@ -1,20 +0,0 @@
-AUX cgal_redhat.patch 847 RMD160 e2a34445fc5d4ef3ff700e640ae0c0724cc8b014 SHA1 f68421364555d0f0b1c55f33aee65de94023bb0a SHA256 150b3c57a2031f95e5227628806d5f4bc587cc10f68bc3e7335d374a4db277a5
-MD5 f69ced473d9b5702771c1dfefd7fc74d files/cgal_redhat.patch 847
-RMD160 e2a34445fc5d4ef3ff700e640ae0c0724cc8b014 files/cgal_redhat.patch 847
-SHA256 150b3c57a2031f95e5227628806d5f4bc587cc10f68bc3e7335d374a4db277a5 files/cgal_redhat.patch 847
-AUX cgal_soname.patch 436 RMD160 abbaf339bc91c55cc85688b0d431c73314c37838 SHA1 3a290d1844fa59c4015860931eb772aef698144b SHA256 1d51e828c7c4a13e0d9ba9120a55d09ffde5a35b8b4141827868e0f6805a4ae1
-MD5 2b451c68c6ee52ae7f164037763b7b20 files/cgal_soname.patch 436
-RMD160 abbaf339bc91c55cc85688b0d431c73314c37838 files/cgal_soname.patch 436
-SHA256 1d51e828c7c4a13e0d9ba9120a55d09ffde5a35b8b4141827868e0f6805a4ae1 files/cgal_soname.patch 436
-DIST CGAL-3.2.1.tar.gz 6391058 RMD160 a0d484140c58f19c0aecd2085588df4d51d41165 SHA1 7999cdd99b35324a6cd0c4c1747e08f5bcd87b95 SHA256 b3dd4fa56744738cb77f18c5097a409fa0ab8245e745fb56e8ebca4311c2a353
-EBUILD cgal-3.2.1.ebuild 3640 RMD160 63328ed295a0f90cede55b177bce19b9be33000b SHA1 78fcb2727f174047d074add1458c01e920042a68 SHA256 9c175795ca341598bc2cabf362400a921f455f2a8d180f5d4c16efe0ab97eea3
-MD5 572bcf311609c2c005d49ffe615c721e cgal-3.2.1.ebuild 3640
-RMD160 63328ed295a0f90cede55b177bce19b9be33000b cgal-3.2.1.ebuild 3640
-SHA256 9c175795ca341598bc2cabf362400a921f455f2a8d180f5d4c16efe0ab97eea3 cgal-3.2.1.ebuild 3640
-MISC metadata.xml 169 RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d SHA1 0c953712f9b97d5ab3f95ae71997ffbc96c4007d SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180
-MD5 710d6aa631e09429775457ff1d26b14e metadata.xml 169
-RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d metadata.xml 169
-SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180 metadata.xml 169
-MD5 dc033dfccb20de803df1e0254d7dca06 files/digest-cgal-3.2.1 235
-RMD160 0a8e4765afd2e0db26228a534d13ae5dfe496221 files/digest-cgal-3.2.1 235
-SHA256 167f6578b165524dfe77dd81175a519d1a2a7a0deca879e04f45382ba0b5fbe8 files/digest-cgal-3.2.1 235
diff --git a/sci-libs/cgal/cgal-3.2.1.ebuild b/sci-libs/cgal/cgal-3.2.1.ebuild
deleted file mode 100644
index 3c61263ad..000000000
--- a/sci-libs/cgal/cgal-3.2.1.ebuild
+++ /dev/null
@@ -1,121 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit eutils toolchain-funcs qt3
-
-DESCRIPTION="The Computational Geometry Algorithms Library is an Open
-Source C++ library of geometric algorithms and data structures."
-HOMEPAGE="http://www.cgal.org/"
-DLPAGE="http://www.cgal.org/download/"
-PKN="$(echo ${PN} | tr {a-z} {A-Z})"
-PK="$(echo ${P} | tr {a-z} {A-Z})"
-SRC_URI="${PK}.tar.gz"
-#SRC_URI="ftp://ftp.mpi-sb.mpg.de/pub/outgoing/${PKN}/${PK}.tar.gz"
-
-LICENSE="LGPL-2 QPL"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE="X zlib qt3 examples"
-RESTRICT="fetch"
-
-DEPEND="zlib? ( sys-libs/zlib )
- qt3? ( $(qt_min_version 3.0) )
- examples? ( $(qt_min_version 3.0) )
- X? ( virtual/x11 )
- dev-libs/mpfr
- sci-libs/libcore
- dev-libs/gmp
- dev-libs/boost"
-RDEPEND="virtual/libc"
-
-S="${WORKDIR}/${PK}"
-
-pkg_nofetch() {
- einfo "Due to license restrictions that may apply to the file in this"
- einfo "package, you must download ${SRC_URI} file manually from"
- einfo "${DLPAGE} and put it in ${DISTDIR}."
-}
-
-src_unpack(){
- if use examples; then
- ewarn "Examples actualy require 28M of disk space."
- fi
- unpack "${A}"
- cd "${S}"
- epatch "${FILESDIR}/${PN}_soname.patch"
- # Patch from redhat bug #199168
- # http://bugzilla.redhat.com/bugzilla/attachment.cgi?id=135376
- # it should be not applied becauseof its textrelaction and issue
- # about undefined symbol: _ZN18QMetaObjectCleanUpC1EPKcPFP11QMetaObjectvE
- # epatch "${FILESDIR}/${PN}_redhat.patch"
-}
-
-src_compile(){
- CGALDIR="${S}/cgal_install_dir"
- myconf="--prefix=${CGALDIR} \
- --with-boost=n \
- --with-boost-param-options=n \
- --with-core=n \
- --with-gmp=n \
- --with-gmpxx=n \
- --with-mpfr=n"
-
- use X && myconf="${myconf} --with-x11=n"
- use zlib && myconf="${myconf} --with-zlib=n"
- if use qt3 || use examples; then
- myconf="${myconf} --with-qt3mt=n --qt_incl_dir ${QTDIR}/include/ \
- --qt_lib_dir ${QTDIR}/lib"
- fi
-
- myconf="${myconf} --without-autofind"
-
- # we use CORE headers provided by libcore
- rm -r "${S}/include/CORE"
-
- ./install_cgal ${myconf} -ni $(which $(tc-getCXX)) || \
- die "Unable to compile"
-}
-
-src_install(){
- SDIR="$(ls ${CGALDIR}/lib/)"
- LIBNAME="${CGALDIR}/lib/${SDIR}/libCGAL"
-
- dolib "${LIBNAME}.a" "${LIBNAME}.so" || die "Unable to install ${LIBNAME}"
- if use qt3 || use examples; then
- dolib "${LIBNAME}Qt.a" ||\
- die "Unable to install ${LIBNAME}Qt.a"
- #"${LIBNAME}Qt.so"
- fi
- dosym "/usr/lib/libCGAL.so" "/usr/lib/libCGAL.so.1" && \
- dosym "/usr/lib/libCGAL.so" "/usr/lib/libCGAL.so.1.0.0" || \
- die "Unable to create symlinks"
-
- CGALINC="${CGALDIR}/include/"
- rm -r "${CGALINC}/OpenNL/LICENSE.OPENNL" || \
- die "Unable to remove uneeded headers"
- if ! use qt3 || ! use examples ; then
- rm $(find ${CGALINC}/CGAL/ -name "Qt*") || \
- die "Unable to remove Qt headers"
- fi
- cp -rp "${CGALINC}" "${D}/usr/" || \
- die "Unable to install headers"
-
- sed "s:${CGALDIR}:/usr:g" -i \
- "${CGALDIR}/make/makefile_${SDIR}" || die "Unable to correct makefle"
- dodir "/usr/share/CGAL" || die "Unable to create share directory"
- cp "${CGALDIR}/make/makefile_${SDIR}" "${D}/usr/share/CGAL/makefile" || \
- die "Unable to install makefile"
- einfo "CGAL_MAKEFILE was installed in : /usr/share/CGAL/makefile"
-
- if use examples; then
- dodir /usr/share/doc/${P}
- cp -r "${S}/demo" "${D}/usr/share/doc/${P}"
- cp -r "${S}/examples" "${D}/usr/share/doc/${P}"
- einfo "There are 2 directories : demo and examples in"
- einfo "/usr/share/doc/${P}"
- einfo "which contains samples applications. To compile them"
- einfo "use the following command :"
- einfo "CGAL_MAKEFILE=/usr/share/CGAL/makefile make"
- fi
-}
diff --git a/sci-libs/cgal/files/cgal_redhat.patch b/sci-libs/cgal/files/cgal_redhat.patch
deleted file mode 100644
index 77a4073e1..000000000
--- a/sci-libs/cgal/files/cgal_redhat.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-diff -ur src/CGALQt/makefile src/CGALQt/makefile
---- src/CGALQt/makefile 2006-05-23 17:15:58.000000000 +0200
-+++ src/CGALQt/makefile 2006-05-24 15:59:33.000000000 +0200
-@@ -71,15 +71,21 @@
-
- static_lib: lib
-
--lib: lib_no_install
-+lib: lib_no_install lib_shared
- mv $(CGAL_QT_LIB) $(CGAL_LIB_DESTINATION)
-+ mv libCGALQt.so $(CGAL_LIB_DESTINATION)
-+ rm $(CGAL_OBJECTS)
-
- lib_no_install: $(CGAL_OBJECTS)
- $(CGAL_LIB_CREATE)$(CGAL_QT_LIB) \
- `ls *$(OBJ_EXT) | awk '{for (i=1; i<=NF;++i){printf "$(CGAL_OBJ_PREFIX)";print $$i}}'`\
- $(CGAL_LIB_LDFLAGS)
- $(RANLIB) $(CGAL_QT_LIB)
-- rm $(CGAL_OBJECTS)
-+
-+lib_shared: $(CGAL_OBJECTS)
-+ $(CGAL_SHARED_LIB_CREATE)libCGALQt.so \
-+ `ls *$(OBJ_EXT) | awk '{for (i=1; i<=NF;++i){printf "$(CGAL_OBJ_PREFIX)";print $$i}}'`\
-+ $(CGAL_LIB_LDFLAGS)
-
- clean:
- rm -f $(CGAL_QT_LIB) $(CGAL_OBJECTS) *.moc
diff --git a/sci-libs/cgal/files/cgal_soname.patch b/sci-libs/cgal/files/cgal_soname.patch
deleted file mode 100644
index a0bfb630d..000000000
--- a/sci-libs/cgal/files/cgal_soname.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- install_cgal 2006-07-13 21:01:01.000000000 +0200
-+++ install_cgal 2006-10-04 13:33:18.000000000 +0200
-@@ -767,7 +767,7 @@
- CGAL_OBJ_PREFIX=""
- CGAL_SHARED_LIB_CXXFLAGS="-fpic"
- CGAL_SHARED_LIB_LDFLAGS=
-- CGAL_SHARED_LIB_CREATE="\$(CGAL_CXX) -shared"
-+ CGAL_SHARED_LIB_CREATE="\$(CGAL_CXX) -shared -Wl,-soname,libCGAL.so.1"
- CGAL_SHARED_LIB_INSTALL_NAME=""
- CGAL_WINLIB_CXXFLAGS=""
- CGAL_QT_CXXFLAGS=""
diff --git a/sci-libs/cgal/files/digest-cgal-3.2.1 b/sci-libs/cgal/files/digest-cgal-3.2.1
deleted file mode 100644
index a824a6e97..000000000
--- a/sci-libs/cgal/files/digest-cgal-3.2.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 82c98d44aa88d1154631f266e85d3b35 CGAL-3.2.1.tar.gz 6391058
-RMD160 a0d484140c58f19c0aecd2085588df4d51d41165 CGAL-3.2.1.tar.gz 6391058
-SHA256 b3dd4fa56744738cb77f18c5097a409fa0ab8245e745fb56e8ebca4311c2a353 CGAL-3.2.1.tar.gz 6391058
diff --git a/sci-libs/cgal/metadata.xml b/sci-libs/cgal/metadata.xml
deleted file mode 100644
index 3190fbf9c..000000000
--- a/sci-libs/cgal/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-geosciences</herd>
-</pkgmetadata>
diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest
deleted file mode 100644
index 0165f0f54..000000000
--- a/sci-libs/cholmod/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-AUX cholmod-1.5.0-autotools.patch 19486 RMD160 b722d7f7f5ce1e127c8b21488953c138c95f042b SHA1 7be8a963b720d1b9dafa30637000eae589dca715 SHA256 3d9fc9bc55cd81c80a1e8eeea1cf0eaf79b92201876c21411d0edca1bb6e071f
-MD5 d61d460a5ca2744ec18e2822510a13a4 files/cholmod-1.5.0-autotools.patch 19486
-RMD160 b722d7f7f5ce1e127c8b21488953c138c95f042b files/cholmod-1.5.0-autotools.patch 19486
-SHA256 3d9fc9bc55cd81c80a1e8eeea1cf0eaf79b92201876c21411d0edca1bb6e071f files/cholmod-1.5.0-autotools.patch 19486
-DIST CHOLMOD-1.5.0.tar.gz 1090186 RMD160 f0788e2a7cd4d4f013c292089fbb0cc3248a0f6a SHA1 8e556aa31e67326f9500baea024e61db33a6b9b3 SHA256 d586ee43a9cbbd29b6303124a6be5ebbb459cadfce315524dbd1c2ce31c5f9a1
-EBUILD cholmod-1.5.0.ebuild 1190 RMD160 7e8eaf8cc5efc0560bc46e7cb73c335d9283bae3 SHA1 920c43cf6b9417dcab6fab000d3d6aa01810816d SHA256 3830ccc6a36676a97c0386d176f8d4ea1932fe1c909913793ddbf461714f783b
-MD5 c56d339101a35a37557a1dc185ba114c cholmod-1.5.0.ebuild 1190
-RMD160 7e8eaf8cc5efc0560bc46e7cb73c335d9283bae3 cholmod-1.5.0.ebuild 1190
-SHA256 3830ccc6a36676a97c0386d176f8d4ea1932fe1c909913793ddbf461714f783b cholmod-1.5.0.ebuild 1190
-MD5 c1729053fde70e30f5ce17a7693fc3b5 files/digest-cholmod-1.5.0 244
-RMD160 2ba2625998bf8d033956ea8f6653b224ddc83b81 files/digest-cholmod-1.5.0 244
-SHA256 edf3eb5a6e8c84a9273fe8682f86b04e1244a770558f64c8a1ac27091e1f3e5c files/digest-cholmod-1.5.0 244
diff --git a/sci-libs/cholmod/cholmod-1.5.0.ebuild b/sci-libs/cholmod/cholmod-1.5.0.ebuild
deleted file mode 100644
index 7a7ebbbcb..000000000
--- a/sci-libs/cholmod/cholmod-1.5.0.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools eutils
-
-MY_PN=CHOLMOD
-
-DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="LGPL-2 GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc metis"
-DEPEND="virtual/lapack
- sci-libs/amd
- sci-libs/colamd
- metis? ( sci-libs/camd sci-libs/ccolamd sci-libs/metis )"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_unpack() {
- unpack "${A}"
- cd "${S}"
- epatch "${FILESDIR}"/${P}-autotools.patch
- eautoreconf
-}
-
-src_compile() {
- econf \
- --with-blas="$(pkg-config --libs blas)" \
- --with-lapack="$(pkg-config --libs lapack)" \
- $(use_enable metis) \
- || die "econf failed"
- emake || die "emake failed"
-}
-
-src_test() {
- cd "${S}"/Demo
- emake test || die "emake test failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README.txt Doc/ChangeLog || die "dodoc failed"
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins Doc/UserGuide.pdf || die "pdf install failed"
- fi
-}
diff --git a/sci-libs/cholmod/files/cholmod-1.5.0-autotools.patch b/sci-libs/cholmod/files/cholmod-1.5.0-autotools.patch
deleted file mode 100644
index 0bbbaf397..000000000
--- a/sci-libs/cholmod/files/cholmod-1.5.0-autotools.patch
+++ /dev/null
@@ -1,569 +0,0 @@
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-24 16:48:13.116732815 +0100
-@@ -0,0 +1,69 @@
-+AC_PREREQ(2.59)
-+AC_INIT(cholmod, 1.5.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADERS(UFconfig.h)
-+
-+AC_ARG_ENABLE(metis,
-+ [AC_HELP_STRING([--enable-metis],
-+ [link against and use metis package])],
-+ [enable_metis=$enableval],
-+ [enable_metis="yes"])
-+AC_MSG_RESULT($enable_metis)
-+
-+# By default, cholmod will build with support for metis
-+# Makefiles need to know for linking.
-+if test x$enable_metis = xno; then
-+ AC_DEFINE(NPARTITION)
-+else
-+ AC_CHECK_HEADERS(metis.h)
-+ AC_CHECK_LIB(metis, libmetis__InitTimers, [], \
-+ [AC_MSG_ERROR([Cannot find libmetis])])
-+
-+ AC_CHECK_HEADERS(ccolamd.h)
-+ AC_CHECK_LIB(ccolamd, ccolamd_report, [], \
-+ [AC_MSG_ERROR([Cannot find libccolamd])])
-+
-+ AC_CHECK_HEADERS(camd.h)
-+ AC_CHECK_LIB(camd, camd_info, [], \
-+ [AC_MSG_ERROR([Cannot find libcamd])])
-+fi
-+AM_CONDITIONAL([ENABLE_METIS], [test x$enable_metis = xyes])
-+
-+AC_CHECK_HEADERS(amd.h)
-+AC_CHECK_LIB(amd, amd_info, [], \
-+ [AC_MSG_ERROR([Cannot find libamd])])
-+
-+AC_CHECK_HEADERS(colamd.h)
-+AC_CHECK_LIB(colamd, colamd_recommended, [], \
-+ [AC_MSG_ERROR([Cannot find libcolamd])])
-+
-+sinclude(acx_blas.m4)
-+sinclude(acx_lapack.m4)
-+
-+ACX_LAPACK
-+
-+if test x"$BLAS_LIBS" = x; then
-+ AC_MSG_ERROR([Cannot find blas libraries])
-+fi
-+
-+if test x"$LAPACK_LIBS" = x; then
-+ AC_MSG_ERROR([Cannot find lapack libraries])
-+fi
-+
-+AC_CONFIG_FILES(
-+ Makefile \
-+ Check/Makefile \
-+ Cholesky/Makefile \
-+ Core/Makefile \
-+ Include/Makefile \
-+ MatrixOps/Makefile \
-+ Modify/Makefile \
-+ Partition/Makefile \
-+ Supernodal/Makefile \
-+ Demo/Makefile)
-+AC_OUTPUT
---- Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am 2007-09-24 14:03:45.960027014 +0100
-@@ -0,0 +1,27 @@
-+SUBDIRS = Include Check Cholesky Core MatrixOps Modify Partition Supernodal Demo
-+EXTRA_DIST = README.txt
-+
-+lib_LTLIBRARIES = libcholmod.la
-+
-+# We're just dumping all the libraries into one, no real source code.
-+libcholmod_la_SOURCES =
-+libcholmod_la_LIBADD = \
-+ $(LAPACK_LIBS) $(BLAS_LIBS) -lcolamd -lamd \
-+ $(top_builddir)/Check/libcheck.la \
-+ $(top_builddir)/Core/libcore.la \
-+ $(top_builddir)/MatrixOps/libmops.la \
-+ $(top_builddir)/Supernodal/libsnod.la \
-+ $(top_builddir)/Modify/libmodify.la \
-+ $(top_builddir)/Check/libcheckl.la \
-+ $(top_builddir)/Core/libcorel.la \
-+ $(top_builddir)/MatrixOps/libmopsl.la \
-+ $(top_builddir)/Supernodal/libsnodl.la \
-+ $(top_builddir)/Modify/libmodifyl.la \
-+ $(top_builddir)/Partition/libpart.la \
-+ $(top_builddir)/Partition/libpartl.la \
-+ $(top_builddir)/Cholesky/libcholesky.la \
-+ $(top_builddir)/Cholesky/libcholeskyl.la
-+
-+if ENABLE_METIS
-+ libcholmod_la_LIBADD = -lmetis -lccolamd -lcamd
-+endif
---- Check/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Check/Makefile.am 2007-09-24 16:55:11.720587690 +0100
-@@ -0,0 +1,5 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libcheck.la libcheckl.la
-+libcheck_la_SOURCES = cholmod_check.c cholmod_read.c cholmod_write.c
-+libcheckl_la_SOURCES = $(libcheck_la_SOURCES)
-+libcheckl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Cholesky/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Cholesky/Makefile.am 2007-09-21 17:11:30.694963872 +0100
-@@ -0,0 +1,17 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libcholesky.la libcholeskyl.la
-+libcholesky_la_SOURCES = cholmod_amd.c \
-+ cholmod_analyze.c \
-+ cholmod_colamd.c \
-+ cholmod_etree.c \
-+ cholmod_factorize.c \
-+ cholmod_postorder.c \
-+ cholmod_rcond.c \
-+ cholmod_resymbol.c \
-+ cholmod_rowcolcounts.c \
-+ cholmod_rowfac.c \
-+ cholmod_solve.c \
-+ cholmod_spsolve.c
-+
-+libcholeskyl_la_SOURCES = $(libcholesky_la_SOURCES)
-+libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Core/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Core/Makefile.am 2007-09-24 14:00:31.588950438 +0100
-@@ -0,0 +1,19 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libcore.la libcorel.la
-+libcore_la_SOURCES = cholmod_aat.c \
-+ cholmod_add.c \
-+ cholmod_band.c \
-+ cholmod_change_factor.c \
-+ cholmod_common.c \
-+ cholmod_complex.c \
-+ cholmod_copy.c \
-+ cholmod_dense.c \
-+ cholmod_error.c \
-+ cholmod_factor.c \
-+ cholmod_memory.c \
-+ cholmod_sparse.c \
-+ cholmod_transpose.c \
-+ cholmod_triplet.c
-+
-+libcorel_la_SOURCES = $(libcore_la_SOURCES)
-+libcorel_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Demo/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am 2007-09-24 13:59:52.498722813 +0100
-@@ -0,0 +1,24 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+LDADD = $(top_builddir)/libcholmod.la $(LAPACK_LIBS) $(BLAS_LIBS)
-+
-+if ENABLE_METIS
-+ LDADD += $(METIS_LIBS)
-+endif
-+
-+check_PROGRAMS = cholmod_demo cholmod_l_demo cholmod_simple
-+cholmod_demo_SOURCES = cholmod_demo.c
-+cholmod_l_demo_SOURCES = cholmod_l_demo.c
-+cholmod_simple_SOURCES = cholmod_simple.c
-+
-+test: check
-+ ./cholmod_demo < Matrix/bcsstk01.tri || exit 1
-+ ./cholmod_l_demo < Matrix/bcsstk01.tri || exit 1
-+ ./cholmod_demo < Matrix/lp_afiro.tri || exit 1
-+ ./cholmod_l_demo < Matrix/lp_afiro.tri || exit 1
-+ ./cholmod_demo < Matrix/can___24.mtx || exit 1
-+ ./cholmod_l_demo < Matrix/can___24.mtx || exit 1
-+ ./cholmod_demo < Matrix/c.tri || exit 1
-+ ./cholmod_l_demo < Matrix/c.tri || exit 1
-+ ./cholmod_simple < Matrix/c.tri || exit 1
-+ ./cholmod_simple < Matrix/can___24.mtx || exit 1
-+ ./cholmod_simple < Matrix/bcsstk01.tri || exit 1
---- Include/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Include/Makefile.am 2007-09-24 16:31:54.456722842 +0100
-@@ -0,0 +1,15 @@
-+include_HEADERS = \
-+ cholmod.h \
-+ cholmod_blas.h \
-+ cholmod_check.h \
-+ cholmod_cholesky.h \
-+ cholmod_complexity.h \
-+ cholmod_config.h \
-+ cholmod_core.h \
-+ cholmod_internal.h \
-+ cholmod_io64.h \
-+ cholmod_matrixops.h \
-+ cholmod_modify.h \
-+ cholmod_partition.h \
-+ cholmod_supernodal.h \
-+ cholmod_template.h
---- MatrixOps/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ MatrixOps/Makefile.am 2007-09-21 17:18:50.316016449 +0100
-@@ -0,0 +1,14 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libmops.la libmopsl.la
-+libmops_la_SOURCES = cholmod_drop.c \
-+ cholmod_horzcat.c \
-+ cholmod_norm.c \
-+ cholmod_scale.c \
-+ cholmod_sdmult.c \
-+ cholmod_ssmult.c \
-+ cholmod_submatrix.c \
-+ cholmod_symmetry.c \
-+ cholmod_vertcat.c
-+
-+libmopsl_la_SOURCES = $(libmops_la_SOURCES)
-+libmopsl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Modify/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Modify/Makefile.am 2007-09-21 17:20:50.058840203 +0100
-@@ -0,0 +1,5 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libmodify.la libmodifyl.la
-+libmodify_la_SOURCES = cholmod_rowadd.c cholmod_updown.c cholmod_rowdel.c
-+libmodifyl_la_SOURCES = $(libmodify_la_SOURCES)
-+libmodifyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Partition/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Partition/Makefile.am 2007-09-21 17:21:25.832878849 +0100
-@@ -0,0 +1,6 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libpart.la libpartl.la
-+libpart_la_SOURCES = cholmod_camd.c cholmod_csymamd.c cholmod_nesdis.c cholmod_ccolamd.c cholmod_metis.c
-+
-+libpartl_la_SOURCES = $(libpart_la_SOURCES)
-+libpartl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- Supernodal/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Supernodal/Makefile.am 2007-09-21 17:21:55.906592653 +0100
-@@ -0,0 +1,5 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+noinst_LTLIBRARIES = libsnod.la libsnodl.la
-+libsnod_la_SOURCES = cholmod_super_numeric.c cholmod_super_symbolic.c cholmod_super_solve.c
-+libsnodl_la_SOURCES = $(libsnod_la_SOURCES)
-+libsnodl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
---- acx_blas.m4 1970-01-01 01:00:00.000000000 +0100
-+++ acx_blas.m4 2007-08-04 22:50:48.000000000 +0100
-@@ -0,0 +1,191 @@
-+##### http://autoconf-archive.cryp.to/acx_blas.html
-+#
-+# SYNOPSIS
-+#
-+# ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
-+#
-+# DESCRIPTION
-+#
-+# This macro looks for a library that implements the BLAS
-+# linear-algebra interface (see http://www.netlib.org/blas/). On
-+# success, it sets the BLAS_LIBS output variable to hold the
-+# requisite library linkages.
-+#
-+# To link with BLAS, you should link with:
-+#
-+# $BLAS_LIBS $LIBS $FLIBS
-+#
-+# in that order. FLIBS is the output variable of the
-+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
-+# is sometimes necessary in order to link with F77 libraries. Users
-+# will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
-+# for the same reason.
-+#
-+# Many libraries are searched for, from ATLAS to CXML to ESSL. The
-+# user may also use --with-blas=<lib> in order to use some specific
-+# BLAS library <lib>. In order to link successfully, however, be
-+# aware that you will probably need to use the same Fortran compiler
-+# (which can be set via the F77 env. var.) as was used to compile the
-+# BLAS library.
-+#
-+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS
-+# library is found, and ACTION-IF-NOT-FOUND is a list of commands to
-+# run it if it is not found. If ACTION-IF-FOUND is not specified, the
-+# default action will define HAVE_BLAS.
-+#
-+# This macro requires autoconf 2.50 or later.
-+#
-+# LAST MODIFICATION
-+#
-+# 2007-07-29
-+#
-+# COPYLEFT
-+#
-+# Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
-+#
-+# This program is free software: you can redistribute it and/or
-+# modify it under the terms of the GNU General Public License as
-+# published by the Free Software Foundation, either version 3 of the
-+# License, or (at your option) any later version.
-+#
-+# This program is distributed in the hope that it will be useful, but
-+# WITHOUT ANY WARRANTY; without even the implied warranty of
-+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-+# General Public License for more details.
-+#
-+# You should have received a copy of the GNU General Public License
-+# along with this program. If not, see
-+# <http://www.gnu.org/licenses/>.
-+#
-+# As a special exception, the respective Autoconf Macro's copyright
-+# owner gives unlimited permission to copy, distribute and modify the
-+# configure scripts that are the output of Autoconf when processing
-+# the Macro. You need not follow the terms of the GNU General Public
-+# License when using or distributing such scripts, even though
-+# portions of the text of the Macro appear in them. The GNU General
-+# Public License (GPL) does govern all other use of the material that
-+# constitutes the Autoconf Macro.
-+#
-+# This special exception to the GPL applies to versions of the
-+# Autoconf Macro released by the Autoconf Macro Archive. When you
-+# make and distribute a modified version of the Autoconf Macro, you
-+# may extend this special exception to the GPL to apply to your
-+# modified version as well.
-+
-+AC_DEFUN([ACX_BLAS], [
-+AC_PREREQ(2.50)
-+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
-+acx_blas_ok=no
-+
-+AC_ARG_WITH(blas,
-+ [AC_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
-+case $with_blas in
-+ yes | "") ;;
-+ no) acx_blas_ok=disable ;;
-+ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
-+ *) BLAS_LIBS="-l$with_blas" ;;
-+esac
-+
-+# Get fortran linker names of BLAS functions to check for.
-+AC_F77_FUNC(sgemm)
-+AC_F77_FUNC(dgemm)
-+
-+acx_blas_save_LIBS="$LIBS"
-+LIBS="$LIBS $FLIBS"
-+
-+# First, check BLAS_LIBS environment variable
-+if test $acx_blas_ok = no; then
-+if test "x$BLAS_LIBS" != x; then
-+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
-+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
-+ AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""])
-+ AC_MSG_RESULT($acx_blas_ok)
-+ LIBS="$save_LIBS"
-+fi
-+fi
-+
-+# BLAS linked to by default? (happens on some supercomputers)
-+if test $acx_blas_ok = no; then
-+ save_LIBS="$LIBS"; LIBS="$LIBS"
-+ AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes])
-+ LIBS="$save_LIBS"
-+fi
-+
-+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(atlas, ATL_xerbla,
-+ [AC_CHECK_LIB(f77blas, $sgemm,
-+ [AC_CHECK_LIB(cblas, cblas_dgemm,
-+ [acx_blas_ok=yes
-+ BLAS_LIBS="-lcblas -lf77blas -latlas"],
-+ [], [-lf77blas -latlas])],
-+ [], [-latlas])])
-+fi
-+
-+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(blas, $sgemm,
-+ [AC_CHECK_LIB(dgemm, $dgemm,
-+ [AC_CHECK_LIB(sgemm, $sgemm,
-+ [acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
-+ [], [-lblas])],
-+ [], [-lblas])])
-+fi
-+
-+# BLAS in Alpha CXML library?
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"])
-+fi
-+
-+# BLAS in Alpha DXML library? (now called CXML, see above)
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"])
-+fi
-+
-+# BLAS in Sun Performance library?
-+if test $acx_blas_ok = no; then
-+ if test "x$GCC" != xyes; then # only works with Sun CC
-+ AC_CHECK_LIB(sunmath, acosp,
-+ [AC_CHECK_LIB(sunperf, $sgemm,
-+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
-+ acx_blas_ok=yes],[],[-lsunmath])])
-+ fi
-+fi
-+
-+# BLAS in SCSL library? (SGI/Cray Scientific Library)
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"])
-+fi
-+
-+# BLAS in SGIMATH library?
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(complib.sgimath, $sgemm,
-+ [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
-+fi
-+
-+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(blas, $sgemm,
-+ [AC_CHECK_LIB(essl, $sgemm,
-+ [acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
-+ [], [-lblas $FLIBS])])
-+fi
-+
-+# Generic BLAS library?
-+if test $acx_blas_ok = no; then
-+ AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"])
-+fi
-+
-+AC_SUBST(BLAS_LIBS)
-+
-+LIBS="$acx_blas_save_LIBS"
-+
-+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
-+if test x"$acx_blas_ok" = xyes; then
-+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
-+ :
-+else
-+ acx_blas_ok=no
-+ $2
-+fi
-+])dnl ACX_BLAS
---- acx_lapack.m4 1970-01-01 01:00:00.000000000 +0100
-+++ acx_lapack.m4 2007-08-04 22:50:48.000000000 +0100
-@@ -0,0 +1,133 @@
-+##### http://autoconf-archive.cryp.to/acx_lapack.html
-+#
-+# SYNOPSIS
-+#
-+# ACX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
-+#
-+# DESCRIPTION
-+#
-+# This macro looks for a library that implements the LAPACK
-+# linear-algebra interface (see http://www.netlib.org/lapack/). On
-+# success, it sets the LAPACK_LIBS output variable to hold the
-+# requisite library linkages.
-+#
-+# To link with LAPACK, you should link with:
-+#
-+# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
-+#
-+# in that order. BLAS_LIBS is the output variable of the ACX_BLAS
-+# macro, called automatically. FLIBS is the output variable of the
-+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and
-+# is sometimes necessary in order to link with F77 libraries. Users
-+# will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual),
-+# for the same reason.
-+#
-+# The user may also use --with-lapack=<lib> in order to use some
-+# specific LAPACK library <lib>. In order to link successfully,
-+# however, be aware that you will probably need to use the same
-+# Fortran compiler (which can be set via the F77 env. var.) as was
-+# used to compile the LAPACK and BLAS libraries.
-+#
-+# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK
-+# library is found, and ACTION-IF-NOT-FOUND is a list of commands to
-+# run it if it is not found. If ACTION-IF-FOUND is not specified, the
-+# default action will define HAVE_LAPACK.
-+#
-+# LAST MODIFICATION
-+#
-+# 2007-07-29
-+#
-+# COPYLEFT
-+#
-+# Copyright (c) 2007 Steven G. Johnson <stevenj@alum.mit.edu>
-+#
-+# This program is free software: you can redistribute it and/or
-+# modify it under the terms of the GNU General Public License as
-+# published by the Free Software Foundation, either version 3 of the
-+# License, or (at your option) any later version.
-+#
-+# This program is distributed in the hope that it will be useful, but
-+# WITHOUT ANY WARRANTY; without even the implied warranty of
-+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-+# General Public License for more details.
-+#
-+# You should have received a copy of the GNU General Public License
-+# along with this program. If not, see
-+# <http://www.gnu.org/licenses/>.
-+#
-+# As a special exception, the respective Autoconf Macro's copyright
-+# owner gives unlimited permission to copy, distribute and modify the
-+# configure scripts that are the output of Autoconf when processing
-+# the Macro. You need not follow the terms of the GNU General Public
-+# License when using or distributing such scripts, even though
-+# portions of the text of the Macro appear in them. The GNU General
-+# Public License (GPL) does govern all other use of the material that
-+# constitutes the Autoconf Macro.
-+#
-+# This special exception to the GPL applies to versions of the
-+# Autoconf Macro released by the Autoconf Macro Archive. When you
-+# make and distribute a modified version of the Autoconf Macro, you
-+# may extend this special exception to the GPL to apply to your
-+# modified version as well.
-+
-+AC_DEFUN([ACX_LAPACK], [
-+AC_REQUIRE([ACX_BLAS])
-+acx_lapack_ok=no
-+
-+AC_ARG_WITH(lapack,
-+ [AC_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
-+case $with_lapack in
-+ yes | "") ;;
-+ no) acx_lapack_ok=disable ;;
-+ -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;;
-+ *) LAPACK_LIBS="-l$with_lapack" ;;
-+esac
-+
-+# Get fortran linker name of LAPACK function to check for.
-+AC_F77_FUNC(cheev)
-+
-+# We cannot use LAPACK if BLAS is not found
-+if test "x$acx_blas_ok" != xyes; then
-+ acx_lapack_ok=noblas
-+fi
-+
-+# First, check LAPACK_LIBS environment variable
-+if test "x$LAPACK_LIBS" != x; then
-+ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
-+ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
-+ AC_TRY_LINK_FUNC($cheev, [acx_lapack_ok=yes], [LAPACK_LIBS=""])
-+ AC_MSG_RESULT($acx_lapack_ok)
-+ LIBS="$save_LIBS"
-+ if test acx_lapack_ok = no; then
-+ LAPACK_LIBS=""
-+ fi
-+fi
-+
-+# LAPACK linked to by default? (is sometimes included in BLAS lib)
-+if test $acx_lapack_ok = no; then
-+ save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
-+ AC_CHECK_FUNC($cheev, [acx_lapack_ok=yes])
-+ LIBS="$save_LIBS"
-+fi
-+
-+# Generic LAPACK library?
-+for lapack in lapack lapack_rs6k; do
-+ if test $acx_lapack_ok = no; then
-+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
-+ AC_CHECK_LIB($lapack, $cheev,
-+ [acx_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
-+ LIBS="$save_LIBS"
-+ fi
-+done
-+
-+AC_SUBST(LAPACK_LIBS)
-+
-+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
-+if test x"$acx_lapack_ok" = xyes; then
-+ ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
-+ :
-+else
-+ acx_lapack_ok=no
-+ $2
-+fi
-+])dnl ACX_LAPACK
diff --git a/sci-libs/cholmod/files/digest-cholmod-1.5.0 b/sci-libs/cholmod/files/digest-cholmod-1.5.0
deleted file mode 100644
index 31af2da3f..000000000
--- a/sci-libs/cholmod/files/digest-cholmod-1.5.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 1e247ed94c78f900ddcdd53c1f4803cb CHOLMOD-1.5.0.tar.gz 1090186
-RMD160 f0788e2a7cd4d4f013c292089fbb0cc3248a0f6a CHOLMOD-1.5.0.tar.gz 1090186
-SHA256 d586ee43a9cbbd29b6303124a6be5ebbb459cadfce315524dbd1c2ce31c5f9a1 CHOLMOD-1.5.0.tar.gz 1090186
diff --git a/sci-libs/colamd/Manifest b/sci-libs/colamd/Manifest
deleted file mode 100644
index f46e5dec6..000000000
--- a/sci-libs/colamd/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-AUX colamd-2.7.0-autotools.patch 1772 RMD160 d6994990c9796c3b6d13e3e2e08bc93a9531b74b SHA1 47e2d279c311acb33d5775264c2c5b9e4842290f SHA256 7c07f731584b72a9f05dd98ab448a09b534ec23867ed358e11341631b09ea2a4
-MD5 49d6cf2a59cae26dc4fcf55c54210549 files/colamd-2.7.0-autotools.patch 1772
-RMD160 d6994990c9796c3b6d13e3e2e08bc93a9531b74b files/colamd-2.7.0-autotools.patch 1772
-SHA256 7c07f731584b72a9f05dd98ab448a09b534ec23867ed358e11341631b09ea2a4 files/colamd-2.7.0-autotools.patch 1772
-DIST COLAMD-2.7.0.tar.gz 55923 RMD160 50cffcbc7d2e757fb2ced406888c27c954c79451 SHA1 da12f698c251eecdf7966a62f5bd6ec11bb238f2 SHA256 e4f3a1231efe3ff98b1ef19b6b003cb42d93d935b865adcd1467a895b40fce6d
-EBUILD colamd-2.7.0.ebuild 775 RMD160 998a62b71f3f0c6adb2c1fe91d8b703cb9c7b23a SHA1 8d11f41e398c421587ca7c8dd3f60f3e3f67f550 SHA256 5368635eb97e7bad49d11f0dcc285ec203b86afef743c1039efdbd6262eb1437
-MD5 0c72224ffea5baa6a4d6bdd68607f5b3 colamd-2.7.0.ebuild 775
-RMD160 998a62b71f3f0c6adb2c1fe91d8b703cb9c7b23a colamd-2.7.0.ebuild 775
-SHA256 5368635eb97e7bad49d11f0dcc285ec203b86afef743c1039efdbd6262eb1437 colamd-2.7.0.ebuild 775
-MD5 c57322d2533ebf95a3757adcbd90b5ae files/digest-colamd-2.7.0 235
-RMD160 358ac538d96b2b6017393003b556a2f20865df44 files/digest-colamd-2.7.0 235
-SHA256 ba7c7a39b8727b8ee04b78fb2f31ff3187d47040d75e2f2cb602cc2d831be4ad files/digest-colamd-2.7.0 235
diff --git a/sci-libs/colamd/colamd-2.7.0.ebuild b/sci-libs/colamd/colamd-2.7.0.ebuild
deleted file mode 100644
index af5b7a3d7..000000000
--- a/sci-libs/colamd/colamd-2.7.0.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools eutils
-
-MY_PN=COLAMD
-DESCRIPTION="Column approximate minimum degree ordering algorithm"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/colamd"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND="sci-libs/ufconfig"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/${P}-autotools.patch
- eautoreconf
-}
-
-src_test() {
- cd "${S}"/Demo
- emake test || die "emake test failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README.txt Doc/ChangeLog || die "dodoc failed"
-}
diff --git a/sci-libs/colamd/files/colamd-2.7.0-autotools.patch b/sci-libs/colamd/files/colamd-2.7.0-autotools.patch
deleted file mode 100644
index 0dd23e038..000000000
--- a/sci-libs/colamd/files/colamd-2.7.0-autotools.patch
+++ /dev/null
@@ -1,58 +0,0 @@
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-21 15:33:53.034845689 +0100
-@@ -0,0 +1,12 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(colamd, 2.7.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADER( UFconfig.h )
-+AC_OUTPUT(
-+ Makefile \
-+ Demo/Makefile \
-+ Source/Makefile)
---- Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am 2007-09-21 15:34:02.954449258 +0100
-@@ -0,0 +1,3 @@
-+SUBDIRS = Source Demo
-+include_HEADERS = $(top_srcdir)/Include/colamd.h
-+EXTRA_DIST = README.txt
---- Source/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am 2007-09-21 15:33:38.437315407 +0100
-@@ -0,0 +1,11 @@
-+AM_CFLAGS = -I$(top_builddir)/Include
-+lib_LTLIBRARIES = libcolamd.la
-+noinst_LTLIBRARIES = libcolamdi.la libcolamdl.la
-+
-+libcolamdl_la_SOURCES = colamd.c
-+libcolamdl_la_CPPFLAGS = -DDLONG
-+
-+libcolamdi_la_SOURCES = colamd.c
-+
-+libcolamd_la_SOURCES = colamd_global.c
-+libcolamd_la_LIBADD = libcolamdi.la libcolamdl.la
---- Demo/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am 2007-09-21 15:57:36.290559012 +0100
-@@ -0,0 +1,20 @@
-+LDADD = $(top_builddir)/Source/libcolamd.la
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+check_PROGRAMS = colamd_example colamd_l_example
-+colamd_example_SOURCES = colamd_example.c
-+colamd_l_example_SOURCES = colamd_l_example.c
-+colamd_l_example_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
-+
-+test: $(check_PROGRAMS)
-+ @for i in $(check_PROGRAMS); do \
-+ echo "Testing $$i"; \
-+ ./$$i > my_$$i.out; \
-+ if ! diff $$i.out my_$$i.out; then \
-+ echo "Testing $$i failed"; \
-+ exit 1; \
-+ fi \
-+ done;
-+
-+clean-local:
-+ rm -f my*.out
diff --git a/sci-libs/colamd/files/digest-colamd-2.7.0 b/sci-libs/colamd/files/digest-colamd-2.7.0
deleted file mode 100644
index bd52c725f..000000000
--- a/sci-libs/colamd/files/digest-colamd-2.7.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 311831d640af502ebfcd567d5afbcd5c COLAMD-2.7.0.tar.gz 55923
-RMD160 50cffcbc7d2e757fb2ced406888c27c954c79451 COLAMD-2.7.0.tar.gz 55923
-SHA256 e4f3a1231efe3ff98b1ef19b6b003cb42d93d935b865adcd1467a895b40fce6d COLAMD-2.7.0.tar.gz 55923
diff --git a/sci-libs/cxsparse/Manifest b/sci-libs/cxsparse/Manifest
deleted file mode 100644
index 1518b7a7c..000000000
--- a/sci-libs/cxsparse/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-AUX cxsparse-2.0.7-autotools.patch 3329 RMD160 0aaeb07b2ba7f2a66d1c5f43c376e856073efbba SHA1 6714ac7da73ff9c1837d48668de77a1153acf79e SHA256 54841d4c6b1f17d29c8b15688a0ac2b01ef7a5f052187dbd3cc357914c30578e
-MD5 157de2b72a3fd96539fa9f21f0360222 files/cxsparse-2.0.7-autotools.patch 3329
-RMD160 0aaeb07b2ba7f2a66d1c5f43c376e856073efbba files/cxsparse-2.0.7-autotools.patch 3329
-SHA256 54841d4c6b1f17d29c8b15688a0ac2b01ef7a5f052187dbd3cc357914c30578e files/cxsparse-2.0.7-autotools.patch 3329
-DIST CXSparse.tar.gz 1901144 RMD160 3199e809bd9d7f09a83beb148e4bb04c02ebf032 SHA1 f9a06735432c9a7ff79a8c278139210840d12acd SHA256 c744c22e69fe329e0cd85d160c347aa0e928302112745df8b8c911caac5b43b5
-EBUILD cxsparse-2.0.7.ebuild 684 RMD160 93d18aa59e15945f1646043715dc5e330eea08ee SHA1 5d50539cadd8ee6e275bf92741cd55444f5bc80a SHA256 b57ca6fe8f74a6b133002c90c82502e549201d0312eb66481b02ee1133c17c1f
-MD5 7d401041261689403f1469dc12c5044b cxsparse-2.0.7.ebuild 684
-RMD160 93d18aa59e15945f1646043715dc5e330eea08ee cxsparse-2.0.7.ebuild 684
-SHA256 b57ca6fe8f74a6b133002c90c82502e549201d0312eb66481b02ee1133c17c1f cxsparse-2.0.7.ebuild 684
-MD5 81683a172d04d2a3766aa2467ddc6178 files/digest-cxsparse-2.0.7 229
-RMD160 14672d1fe8244f5e3ec5d9b2c39b34a24685892e files/digest-cxsparse-2.0.7 229
-SHA256 1d815f7f58c968c5a6ecca08bb24cc441f380ac4b4fd41613ef2d5517a58b1f5 files/digest-cxsparse-2.0.7 229
diff --git a/sci-libs/cxsparse/cxsparse-2.0.7.ebuild b/sci-libs/cxsparse/cxsparse-2.0.7.ebuild
deleted file mode 100644
index a849f463e..000000000
--- a/sci-libs/cxsparse/cxsparse-2.0.7.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit autotools eutils
-
-MY_PN=CXSparse
-DESCRIPTION="Extended sparse matrix package."
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cxsparse"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${MY_PN}/${MY_PN}.tar.gz"
-
-LICENSE="LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND="sci-libs/ufconfig"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/${P}-autotools.patch
- eautoreconf
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
- dodoc README.txt Doc/ChangeLog || die "dodoc failed"
-}
diff --git a/sci-libs/cxsparse/files/cxsparse-2.0.7-autotools.patch b/sci-libs/cxsparse/files/cxsparse-2.0.7-autotools.patch
deleted file mode 100644
index 85f4f00dc..000000000
--- a/sci-libs/cxsparse/files/cxsparse-2.0.7-autotools.patch
+++ /dev/null
@@ -1,88 +0,0 @@
---- configure.ac 1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac 2007-09-21 16:18:36.345100692 +0100
-@@ -0,0 +1,10 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(cxsparse, 2.0.7, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CONFIG_FILES([Makefile Demo/Makefile Source/Makefile])
-+AC_OUTPUT
-+
---- Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am 2007-09-21 16:49:36.445850688 +0100
-@@ -0,0 +1,3 @@
-+SUBDIRS = Demo Source
-+EXTRA_DIST = README.txt
-+include_HEADERS = Include/cs.h
---- Source/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am 2007-09-21 16:44:40.012957940 +0100
-@@ -0,0 +1,24 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+CS_SOURCE = cs_add.c cs_amd.c cs_chol.c cs_cholsol.c cs_counts.c cs_cumsum.c \
-+ cs_droptol.c cs_dropzeros.c cs_dupl.c cs_entry.c \
-+ cs_etree.c cs_fkeep.c cs_gaxpy.c cs_happly.c cs_house.c cs_ipvec.c \
-+ cs_lsolve.c cs_ltsolve.c cs_lu.c cs_lusol.c cs_util.c cs_multiply.c \
-+ cs_permute.c cs_pinv.c cs_post.c cs_pvec.c cs_qr.c cs_qrsol.c \
-+ cs_scatter.c cs_schol.c cs_sqr.c cs_symperm.c cs_tdfs.c cs_malloc.c \
-+ cs_transpose.c cs_compress.c cs_usolve.c cs_utsolve.c cs_scc.c \
-+ cs_maxtrans.c cs_dmperm.c cs_updown.c cs_print.c cs_norm.c cs_load.c \
-+ cs_dfs.c cs_reach.c cs_spsolve.c cs_leaf.c cs_ereach.c cs_randperm.c
-+
-+lib_LTLIBRARIES = libcxsparse.la
-+noinst_LTLIBRARIES = libcxsparse_di.la libcxsparse_dl.la libcxsparse_ci.la libcxsparse_cl.la
-+
-+libcxsparse_di_la_SOURCES = $(CS_SOURCE)
-+libcxsparse_dl_la_SOURCES = $(CS_SOURCE)
-+libcxsparse_dl_la_CPPFLAGS = $(AM_CPPFLAGS) -DCS_LONG
-+libcxsparse_ci_la_SOURCES = $(CS_SOURCE)
-+libcxsparse_ci_la_CPPFLAGS = $(AM_CPPFLAGS) -DCS_COMPLEX
-+libcxsparse_cl_la_SOURCES = $(CS_SOURCE)
-+libcxsparse_cl_la_CPPFLAGS = $(AM_CPPFLAGS) -DCS_LONG -DCS_COMPLEX
-+
-+libcxsparse_la_SOURCES = cs_convert.c
-+libcxsparse_la_LIBADD = libcxsparse_di.la libcxsparse_dl.la libcxsparse_ci.la libcxsparse_cl.la
---- Demo/Makefile.am 1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am 2007-09-21 16:38:55.422571958 +0100
-@@ -0,0 +1,39 @@
-+check_PROGRAMS = \
-+ cs_ci_demo1 \
-+ cs_ci_demo2 \
-+ cs_ci_demo3 \
-+ cs_cl_demo1 \
-+ cs_cl_demo2 \
-+ cs_cl_demo3 \
-+ cs_demo1 \
-+ cs_demo2 \
-+ cs_demo3 \
-+ cs_di_demo1 \
-+ cs_di_demo2 \
-+ cs_di_demo3 \
-+ cs_dl_demo1 \
-+ cs_dl_demo2 \
-+ cs_dl_demo3 \
-+ cs_idemo \
-+ cs_ldemo
-+
-+LDADD = $(top_builddir)/Source/libcxsparse.la -lm
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+cs_ci_demo1_SOURCES = cs_ci_demo1.c
-+cs_ci_demo2_SOURCES = cs_ci_demo2.c cs_ci_demo.c
-+cs_ci_demo3_SOURCES = cs_ci_demo3.c cs_ci_demo.c
-+cs_cl_demo1_SOURCES = cs_cl_demo1.c
-+cs_cl_demo2_SOURCES = cs_cl_demo2.c cs_cl_demo.c
-+cs_cl_demo3_SOURCES = cs_cl_demo3.c cs_cl_demo.c
-+cs_demo1_SOURCES = cs_demo1.c
-+cs_demo2_SOURCES = cs_demo2.c cs_demo.c
-+cs_demo3_SOURCES = cs_demo3.c cs_demo.c
-+cs_di_demo1_SOURCES = cs_di_demo1.c
-+cs_di_demo2_SOURCES = cs_di_demo2.c cs_di_demo.c
-+cs_di_demo3_SOURCES = cs_di_demo3.c cs_di_demo.c
-+cs_dl_demo1_SOURCES = cs_dl_demo1.c
-+cs_dl_demo2_SOURCES = cs_dl_demo2.c cs_dl_demo.c
-+cs_dl_demo3_SOURCES = cs_dl_demo3.c cs_dl_demo.c
-+cs_idemo_SOURCES = cs_idemo.c
-+cs_ldemo_SOURCES = cs_ldemo.c
diff --git a/sci-libs/cxsparse/files/digest-cxsparse-2.0.7 b/sci-libs/cxsparse/files/digest-cxsparse-2.0.7
deleted file mode 100644
index 36bc8bafa..000000000
--- a/sci-libs/cxsparse/files/digest-cxsparse-2.0.7
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 35cb02fbac577ed84b66a14d63aa5394 CXSparse.tar.gz 1901144
-RMD160 3199e809bd9d7f09a83beb148e4bb04c02ebf032 CXSparse.tar.gz 1901144
-SHA256 c744c22e69fe329e0cd85d160c347aa0e928302112745df8b8c911caac5b43b5 CXSparse.tar.gz 1901144
diff --git a/sci-libs/gsl/ChangeLog b/sci-libs/gsl/ChangeLog
deleted file mode 100644
index 14014c891..000000000
--- a/sci-libs/gsl/ChangeLog
+++ /dev/null
@@ -1,205 +0,0 @@
-# ChangeLog for sci-libs/gsl
-# Copyright 2002-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*gsl-1.10 (19 Sep 2007)
-
- 19 Sep 2007; Sébastien Fabbro <bicatali@gentoo.org> ChangeLog:
- Bump. Fixed cblas stuff.
-
- 16 Sep 2007; Sébastien Fabbro <bicatali@gentoo.org>
- files/eselect.cblas.gsl, metadata.xml:
- fixed link for cblas.h, closing bug #192718, added longdescription.
-
-*gsl-1.9-r1 (21 Aug 2007)
-
- 21 Aug 2007; Sébastien Fabbro <bicatali@gentoo.org> +files/cblas.pc.in,
- +files/eselect.cblas.gsl, +gsl-1.9-r1.ebuild:
- Added eselect and cblas pkg-config files to be a possible implementation of
- virtual/cblas. General cleanup continued.
-
- 12 Jun 2007; Christoph Mende <angelos@gentoo.org> gsl-1.9.ebuild:
- Stable on amd64 wrt bug 180916
-
- 09 Jun 2007; nixnut <nixnut@gentoo.org> gsl-1.9.ebuild:
- Stable on ppc wrt bug 180916
-
- 07 Jun 2007; Markus Rothe <corsair@gentoo.org> gsl-1.9.ebuild:
- Stable on ppc64; bug #180916
-
- 06 Jun 2007; Raúl Porcel <armin76@gentoo.org> gsl-1.9.ebuild:
- alpha/ia64/x86 stable wrt #180916
-
- 05 Jun 2007; Jeroen Roovers <jer@gentoo.org> gsl-1.9.ebuild:
- Stable for HPPA (bug #180916).
-
- 05 Jun 2007; Gustavo Zacarias <gustavoz@gentoo.org> gsl-1.9.ebuild:
- Stable on sparc wrt #180916
-
- 28 Mar 2007; Fabian Groffen <grobian@gentoo.org> gsl-1.7.ebuild,
- gsl-1.8.ebuild, gsl-1.9.ebuild:
- Dropped ppc-macos keyword, see you in prefix
-
- 28 Mar 2007; Raúl Porcel <armin76@gentoo.org> gsl-1.8.ebuild:
- ia64 stable wrt bug 167860
-
- 27 Mar 2007; Michael Cummings <mcummings@gentoo.org> gsl-1.9.ebuild:
- Tested on swarm for USE-flag changes in dev-perl/PDL
-
- 15 Mar 2007; Markus Dittrich <markusle@gentoo.org> gsl-1.9.ebuild:
- Some general clean-ups thanks to Santiago M. Mola Velasco
- <cooldwind@gmail.com> (see bug #170919).
-
- 06 Mar 2007; Simon Stelling <blubb@gentoo.org> gsl-1.8.ebuild:
- stable on amd64; bug 169212
-
- 28 Feb 2007; Roy Marples <uberlord@gentoo.org> gsl-1.9.ebuild:
- Add ~x86-fbsd keyword.
-
- 24 Feb 2007; nixnut <nixnut@gentoo.org> gsl-1.8.ebuild:
- Stable on ppc wrt bug 167860
-
- 24 Feb 2007; Markus Rothe <corsair@gentoo.org> gsl-1.8.ebuild:
- Stable on ppc64; bug #167860
-
- 22 Feb 2007; Christian Faulhammer <opfer@gentoo.org> gsl-1.8.ebuild:
- stable x86; bug 167860
-
- 22 Feb 2007; Jeroen Roovers <jer@gentoo.org> gsl-1.8.ebuild:
- Stable for HPPA (bug #167860).
-
-*gsl-1.9 (21 Feb 2007)
-
- 21 Feb 2007; Markus Dittrich <markusle@gentoo.org> +gsl-1.9.ebuild:
- Version bump.
-
- 21 Feb 2007; Markus Dittrich <markusle@gentoo.org> gsl-1.8.ebuild:
- Removed filtering of -mfpmath=sse since otherwise tests fail
- on a -mfpmath=sse built toolchain.
-
- 06 Feb 2007; Gustavo Zacarias <gustavoz@gentoo.org> gsl-1.8.ebuild:
- Stable on sparc
-
- 18 Jan 2007; Ferris McCormick <fmccor@gentoo.org> gsl-1.7.ebuild:
- Stable on sparc (no problems reported for 15 months).
-
- 01 Nov 2006; Donnie Berkholz <dberkholz@gentoo.org>; ChangeLog:
- Update for my nick change spyderous -> dberkholz.
-
- 17 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/gsl-1.6-deps.diff, gsl-1.8.ebuild:
- (#134063) Fix for --as-needed.
-
- 16 Jun 2006; Markus Rothe <corsair@gentoo.org> gsl-1.7.ebuild:
- Stable on ppc64
-
- 23 May 2006; Markus Rothe <corsair@gentoo.org> gsl-1.4.ebuild:
- Stable on ppc64
-
-*gsl-1.8 (11 Apr 2006)
-
- 11 Apr 2006; George Shapovalov <george@gentoo.org> +gsl-1.8.ebuild:
- new version
-
- 10 Mar 2006; Aron Griffis <agriffis@gentoo.org> gsl-1.7.ebuild:
- Mark 1.7 stable on ia64
-
- 22 Feb 2006; Emanuele Giaquinta <exg@gentoo.org> gsl-1.7.ebuild:
- Stable on ppc.
-
- 08 Feb 2006; Aron Griffis <agriffis@gentoo.org> gsl-1.7.ebuild:
- Mark 1.7 stable on alpha
-
- 18 Jan 2006; Marcus D. Hanwell <cryos@gentoo.org> gsl-1.7.ebuild:
- Stable on amd64.
-
- 10 Nov 2005; Fabian Groffen <grobian@gentoo.org> gsl-1.7.ebuild:
- Marked ~ppc-macos (bug #111578)
-
-*gsl-1.7 (14 Oct 2005)
-
- 14 Oct 2005; Marcus D. Hanwell <cryos@gentoo.org> +gsl-1.7.ebuild:
- Version bump, closes bug 106895.
-
- 26 Jun 2005; Olivier Fisette <ribosome@gentoo.org> -files/k6-undef.diff,
- -gsl-1.3.ebuild:
- Removed obsolete version and unused patch.
-
-*gsl-1.6 (16 Jan 2005)
-
- 16 Jan 2005; Olivier Fisette <ribosome@gentoo.org> gsl-1.3.ebuild,
- gsl-1.4.ebuild, +gsl-1.6.ebuild:
- New version. Fixed HOMEPAGE and SRC_URI (use the GNU mirrors).
-
- 29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
- Change encoding to UTF-8 for GLEP 31 compliance
-
-*gsl-1.4 (28 Dec 2004)
-
- 28 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
- +files/k6-undef.diff, +gsl-1.3.ebuild, +gsl-1.4.ebuild:
- Moved from dev-libs/gsl to sci-libs/gsl.
-
- 23 Dec 2004; Markus Rothe <corsair@gentoo.org> gsl-1.4.ebuild:
- Added ~ppc64 to KEYWORDS; bug #74046
-
- 01 Jul 2004; Jeremy Huddleston <eradicator@gentoo.org> gsl-1.3.ebuild,
- gsl-1.4.ebuild:
- virtual/glibc -> virtual/libc
-
- 23 May 2004; Bryan Østergaard <kloeri@gentoo.org> gsl-1.4.ebuild:
- Stable on alpha.
-
- 02 May 2004; David Holm <dholm@gentoo.org> gsl-1.4.ebuild:
- Added to ~ppc.
-
- 14 Apr 2004; <kloeri@gentoo.org> gsl-1.4.ebuild:
- Keyworded ~alpha.
-
- 10 Mar 2004; Patrick Kursawe <phosphan@gentoo.org> gsl-1.0.ebuild,
- gsl-1.1.1.ebuild, gsl-1.2.ebuild, gsl-1.3.ebuild, gsl-1.4.ebuild:
- Cleanup, bump to stable
-
- 21 Nov 2003; George Shapovalov <george@gentoo.org> gsl-1.3.ebuild, gsl-1.4.ebuild :
- added "filter-mpmath sse", fixes #33059
-
-*gsl-1.4 (18 Nov 2003)
-
- 18 Nov 2003; Stephen Diener <sediener@gentoo.org> gsl-1.4.ebuild:
- Version bump.
-
- 13 Jun 2003; George Shapovalov <george@gentoo.org> gsl-1.3.ebuild :
- added filter-flags -ffast-math (#22696), some cleanups.
-
-*gsl-1.1.1 (12 Jun 2003)
-
- 12 Jun 2003; <msterret@gentoo.org> gsl-1.1.1.ebuild:
- fix Header
-
-*gsl-1.3 (14 Feb 2003)
-
- 14 Feb 2003; Martin Holzer <mholzer@gentoo.org> gsl-1.3.ebuild,
- files/digest-gsl-1.3 ChangeLog :
- Version bump. Closes #15665.
-
-*gsl-1.2 (06 Aug 2002)
-
- 18 Oct 2002; George Shapovalov <george@gentoo.org> gsl-1.2.ebuild,
- files/k6-undef.diff :
-
- fix building on k6 systems. Thanks to Charles G. Waldman <cgw@alum.mit.edu>, #9011
-
- 06 Aug 2002; George Shapovalov <george@gentoo.org> gsl-1.2.ebuild,
- files/digest-gsl-1.2 :
-
- new version, renaiming old ebuild sufficed
-
-*gsl-1.0 (1 Feb 2002)
-
- 1 Feb 2002; G.Bevin <gbevin@gentoo.org> ChangeLog :
-
- Added initial ChangeLog which should be updated whenever the package is
- updated in any way. This changelog is targetted to users. This means that the
- comments should well explained and written in clean English. The details about
- writing correct changelogs are explained in the skel.ChangeLog file which you
- can find in the root directory of the portage repository.
diff --git a/sci-libs/gsl/Manifest b/sci-libs/gsl/Manifest
deleted file mode 100644
index 1a845f93e..000000000
--- a/sci-libs/gsl/Manifest
+++ /dev/null
@@ -1,28 +0,0 @@
-AUX cblas.pc.in 290 RMD160 4fc855a67383ac17b68c29d8f10307178919e217 SHA1 ec23b2092a5498beb602c9b558af8abcf5dd6358 SHA256 f47133de2f49a5ff53c8e295d03fbe8923c79cd0978cedb903cfdf7e57a873a1
-MD5 a3aa0d987b3770c85cb8b79f215583c1 files/cblas.pc.in 290
-RMD160 4fc855a67383ac17b68c29d8f10307178919e217 files/cblas.pc.in 290
-SHA256 f47133de2f49a5ff53c8e295d03fbe8923c79cd0978cedb903cfdf7e57a873a1 files/cblas.pc.in 290
-AUX eselect.cblas.gsl 216 RMD160 b2c3d435952eb73fcd02406fbd087176407c1f76 SHA1 814489871b93c2b4f7195fb9bbef1227e04c36cf SHA256 2be1ba93a0bafa73df52913f54d1c7fd299aa1cd0a98c5fbe4eac894073ebac7
-MD5 0a4eac4ceb14f3fdbed0c7145522b6e9 files/eselect.cblas.gsl 216
-RMD160 b2c3d435952eb73fcd02406fbd087176407c1f76 files/eselect.cblas.gsl 216
-SHA256 2be1ba93a0bafa73df52913f54d1c7fd299aa1cd0a98c5fbe4eac894073ebac7 files/eselect.cblas.gsl 216
-AUX gsl-cblas.patch 2857 RMD160 2bc2973635d608cdaf73849ba1a85797bbf7dc74 SHA1 b97d867aa5389d258ec04383a1598ae1fad25446 SHA256 e0286230eff05faf9bf2c5c320a0a3a8855286ba2a5fb163cb07a5386e60c5bf
-MD5 a1165d10cfae7ee7fc928c9c47e4076e files/gsl-cblas.patch 2857
-RMD160 2bc2973635d608cdaf73849ba1a85797bbf7dc74 files/gsl-cblas.patch 2857
-SHA256 e0286230eff05faf9bf2c5c320a0a3a8855286ba2a5fb163cb07a5386e60c5bf files/gsl-cblas.patch 2857
-DIST gsl-1.10.tar.gz 2842422 RMD160 0b6ac2b1aec6a93521941620a824ae78f79adebb SHA1 401d0203d362948e30d0b3c58601a3bc52d0bfd4 SHA256 ea3968b58bfc7619f47bf5ff64a7198a38c72419d24b844e71e48823a4776ff0
-EBUILD gsl-1.10.ebuild 1958 RMD160 897ff1dc0b77a3bfe9b8485557310f63a53fd904 SHA1 36b13508106e338c3f505208a58dad5009007ec5 SHA256 3e98ed26184f5c065223b28efeefddbe3f78760d8243c75821c2d2abec222ab1
-MD5 2b3032efa4e3f141e76eb51a76f19e04 gsl-1.10.ebuild 1958
-RMD160 897ff1dc0b77a3bfe9b8485557310f63a53fd904 gsl-1.10.ebuild 1958
-SHA256 3e98ed26184f5c065223b28efeefddbe3f78760d8243c75821c2d2abec222ab1 gsl-1.10.ebuild 1958
-MISC ChangeLog 6675 RMD160 14628e25bfeca916116b9a95a8e505d3be5b4457 SHA1 8024277399b888fe723af40cdcdcc702dec3fd66 SHA256 e4099f58e9b34fbe0c0794c1843e3cc54a39c9edd89846638bc1c2dd17122a35
-MD5 6dafa56826e2704fe9687ab4e3bc7029 ChangeLog 6675
-RMD160 14628e25bfeca916116b9a95a8e505d3be5b4457 ChangeLog 6675
-SHA256 e4099f58e9b34fbe0c0794c1843e3cc54a39c9edd89846638bc1c2dd17122a35 ChangeLog 6675
-MISC metadata.xml 836 RMD160 b943f54adb51092168df6701a8b609d542294ed2 SHA1 6fa1524e79b23126873585c549946acb69999060 SHA256 5a46124b74c2db07241cec1c43eaf3c7f5882fdf9ce9587383b425443ed9a67c
-MD5 529476866309c697ceae813fad490028 metadata.xml 836
-RMD160 b943f54adb51092168df6701a8b609d542294ed2 metadata.xml 836
-SHA256 5a46124b74c2db07241cec1c43eaf3c7f5882fdf9ce9587383b425443ed9a67c metadata.xml 836
-MD5 b700c72ebce59c63bc26115233ef2873 files/digest-gsl-1.10 229
-RMD160 0e0fe6c0cb5f64d212faa5105b545a7054f5b8f5 files/digest-gsl-1.10 229
-SHA256 0cbbd8d5a2163fecec47895c7a73fafcf47e79d3b9930aca339833e08958c8c5 files/digest-gsl-1.10 229
diff --git a/sci-libs/gsl/files/cblas.pc.in b/sci-libs/gsl/files/cblas.pc.in
deleted file mode 100644
index a2580f85e..000000000
--- a/sci-libs/gsl/files/cblas.pc.in
+++ /dev/null
@@ -1,12 +0,0 @@
-prefix=/usr
-exec_prefix=${prefix}
-libdir=/usr/@LIBDIR@
-includedir=${prefix}/include
-
-Name: cblas
-Description: GSL C Implementation of the Basic Linear Algebra Subprograms
-Version: @PV@
-URL: http://www.gnu.org/software/gsl
-Libs: -L${libdir} -lcblas
-Libs.private: -lm
-Cflags: -I${includedir}
diff --git a/sci-libs/gsl/files/digest-gsl-1.10 b/sci-libs/gsl/files/digest-gsl-1.10
deleted file mode 100644
index f17e89c7b..000000000
--- a/sci-libs/gsl/files/digest-gsl-1.10
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 d67be4f2e5560d6cf907e18a428becdc gsl-1.10.tar.gz 2842422
-RMD160 0b6ac2b1aec6a93521941620a824ae78f79adebb gsl-1.10.tar.gz 2842422
-SHA256 ea3968b58bfc7619f47bf5ff64a7198a38c72419d24b844e71e48823a4776ff0 gsl-1.10.tar.gz 2842422
diff --git a/sci-libs/gsl/files/eselect.cblas.gsl b/sci-libs/gsl/files/eselect.cblas.gsl
deleted file mode 100644
index af6fee51f..000000000
--- a/sci-libs/gsl/files/eselect.cblas.gsl
+++ /dev/null
@@ -1,5 +0,0 @@
-libgslcblas.so /usr/@LIBDIR@/libcblas.so
-libgslcblas.so.0 /usr/@LIBDIR@/libcblas.so.0
-libgslcblas.a /usr/@LIBDIR@/libcblas.a
-../blas/gsl/cblas.pc /usr/@LIBDIR@/pkgconfig/cblas.pc
-gsl/gsl_cblas.h /usr/include/cblas.h
diff --git a/sci-libs/gsl/files/gsl-cblas.patch b/sci-libs/gsl/files/gsl-cblas.patch
deleted file mode 100644
index 3861786a1..000000000
--- a/sci-libs/gsl/files/gsl-cblas.patch
+++ /dev/null
@@ -1,90 +0,0 @@
---- configure.ac.orig 2007-09-19 13:25:25.644286706 +0100
-+++ configure.ac 2007-09-19 15:58:30.963832549 +0100
-@@ -130,6 +130,14 @@
- AC_CHECK_LIB(m, cos)
- fi
-
-+dnl Use alternate cblas if specified by user
-+CBLAS_LIBS="-lgslcblas"
-+AC_ARG_WITH(cblas,
-+ [AC_HELP_STRING([--with-cblas=<lib>], [use external CBLAS library <lib>])],
-+ [CBLAS_LIBS="$withval"])
-+AM_CONDITIONAL(LINK_WITH_CBLAS_EXTERNAL, [ test ! "x$CBLAS_LIBS" = x"-lgslcblas" ])
-+AC_SUBST(CBLAS_LIBS)
-+
- dnl Remember to put a definition in acconfig.h for each of these
- AC_CHECK_DECLS(feenableexcept,,,[#define _GNU_SOURCE 1
- #include <fenv.h>])
---- Makefile.am.orig 2007-09-19 13:25:11.299469242 +0100
-+++ Makefile.am 2007-09-19 15:53:28.594601509 +0100
-@@ -15,28 +15,29 @@
-
- EXTRA_DIST = autogen.sh gsl-config.in gsl.pc.in configure.ac THANKS BUGS SUPPORT gsl.spec.in gsl.m4 test_gsl_histogram.sh
-
--lib_LTLIBRARIES = libgsl.la
--libgsl_la_SOURCES = version.c
--libgsl_la_LIBADD = $(SUBLIBS)
--libgsl_la_LDFLAGS = -version-info $(GSL_LT_VERSION)
--noinst_HEADERS = templates_on.h templates_off.h
-+lib_LTLIBRARIES = libgsl.la
-
--MINGW32_HOST = @MINGW32_HOST@
--if MINGW32_HOST
--libgsl_la_LIBADD += cblas/libgslcblas.la
--libgsl_la_LDFLAGS += -no-undefined
-+if LINK_WITH_CBLAS_EXTERNAL
-+gsl_cblas = $(CBLAS_LIBS)
-+else
-+gsl_cblas = cblas/libgslcblas.la
- endif
-
-+libgsl_la_SOURCES = version.c
-+libgsl_la_LDFLAGS = -no-undefined -version-info $(GSL_LT_VERSION)
-+libgsl_la_LIBADD = $(SUBLIBS) $(gsl_cblas)
-+noinst_HEADERS = templates_on.h templates_off.h
-+
- m4datadir = $(datadir)/aclocal
- m4data_DATA = gsl.m4
-
- bin_PROGRAMS = gsl-randist gsl-histogram
-
- gsl_randist_SOURCES = gsl-randist.c
--gsl_randist_LDADD = libgsl.la cblas/libgslcblas.la
-+gsl_randist_LDADD = libgsl.la $(gsl_cblas)
-
- gsl_histogram_SOURCES = gsl-histogram.c
--gsl_histogram_LDADD = libgsl.la cblas/libgslcblas.la
-+gsl_histogram_LDADD = libgsl.la $(gsl_cblas)
-
- check_SCRIPTS = test_gsl_histogram.sh
- TESTS = test_gsl_histogram.sh
---- gsl-config.in.orig 2007-09-19 13:25:39.373069065 +0100
-+++ gsl-config.in 2007-09-19 13:01:31.410346928 +0100
-@@ -19,8 +19,7 @@
- --version output version information
-
- An external CBLAS library can be specified using the GSL_CBLAS_LIB
--environment variable. The GSL CBLAS library is used by default.
--
-+environment variable. By default, it will use the one compiled with gsl: @CBLAS_LIBS@.
- EOF
-
- exit $1
-@@ -62,7 +61,7 @@
- ;;
-
- --libs)
-- : ${GSL_CBLAS_LIB=-lgslcblas}
-+ : ${GSL_CBLAS_LIB=@CBLAS_LIBS@}
- echo @GSL_LIBS@ $GSL_CBLAS_LIB -lm
- ;;
-
---- gsl.pc.in.orig 2007-09-19 13:25:49.477644892 +0100
-+++ gsl.pc.in 2007-09-19 13:01:56.355768487 +0100
-@@ -6,5 +6,5 @@
- Name: GSL
- Description: GNU Scientific Library
- Version: @VERSION@
--Libs: @GSL_LIBS@ -lgslcblas @LIBS@
-+Libs: @GSL_LIBS@ @CBLAS_LIBS@ @LIBS@
- Cflags: @GSL_CFLAGS@
diff --git a/sci-libs/gsl/gsl-1.10.ebuild b/sci-libs/gsl/gsl-1.10.ebuild
deleted file mode 100644
index 5d1e6ef3a..000000000
--- a/sci-libs/gsl/gsl-1.10.ebuild
+++ /dev/null
@@ -1,68 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/gsl/gsl-1.9-r1.ebuild,v 1.1 2007/08/21 17:53:34 bicatali Exp $
-
-inherit eutils flag-o-matic toolchain-funcs autotools
-
-DESCRIPTION="The GNU Scientific Library"
-HOMEPAGE="http://www.gnu.org/software/gsl/"
-SRC_URI="mirror://gnu/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd"
-IUSE="cblas"
-
-DEPEND="app-admin/eselect-cblas
- dev-util/pkgconfig
- cblas? ( virtual/cblas )"
-
-RDEPEND="app-admin/eselect-cblas
- cblas? ( virtual/cblas )"
-
-
-pkg_setup() {
- # icc-10.0.026 did not pass rng tests (last check: gsl-1.10)
- if [[ $(tc-getCC) == icc ]]; then
- eerror "icc known to fail tests. Revert to safer gcc and re-emerge."
- die "gsl does not work when compiled with icc"
- fi
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/gsl-cblas.patch
- eautoreconf
-}
-
-src_compile() {
- # could someone check if they are still needed?
- replace-cpu-flags k6 k6-2 k6-3 i586
- filter-flags -ffast-math
- local myconf=
- use cblas && myconf="--with-cblas=$(pkg-config --libs cblas)"
- econf "${myconf}"|| die "econf failed"
- emake || die 'emake failed.'
-}
-
-src_install() {
- emake install DESTDIR="${D}" || die "emake install failed."
- dodoc AUTHORS BUGS ChangeLog NEWS README SUPPORT \
- THANKS TODO || die "dodoc failed"
-
- # take care of pkgconfig file for cblas implementation.
- sed -e "s/@LIBDIR@/$(get_libdir)/" \
- -e "s/@PV@/${PV}/" \
- "${FILESDIR}"/cblas.pc.in > cblas.pc \
- || die "sed cblas.pc failed"
- insinto /usr/$(get_libdir)/blas/gsl
- doins cblas.pc || die "installing cblas.pc failed"
- eselect cblas add $(get_libdir) "${FILESDIR}"/eselect.cblas.gsl gsl
-}
-
-pkg_postinst() {
- [[ -z "$(eselect cblas show)" ]] && eselect cblas set gsl
- elog "To use CBLAS gsl implementation, you have to issue (as root):"
- elog "\t eselect cblas set gsl"
-}
diff --git a/sci-libs/gsl/metadata.xml b/sci-libs/gsl/metadata.xml
deleted file mode 100644
index a94c243d3..000000000
--- a/sci-libs/gsl/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-The GNU Scientific Library (GSL) is a collection of routines for
-numerical analysis. The routines are written from scratch by the GSL
-team in C, and present a modern API for C programmers, while allowing
-wrappers to be written for very high level languages.
-
-GSL includes data types and routines for complex numbers, vectors,
-matrices, basic linear algebra subroutines (BLAS), eigensystems,
-simulated annealing, minimization, root finding, pseudo-random
-numbers, least-squares fitting, fast Fourier transforms (FFT),
-differential equations, quadrature, Monte Carlo integration, special
-functions, physical constants, and much more.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-libs/ipp/Manifest b/sci-libs/ipp/Manifest
deleted file mode 100644
index 6a1443a0e..000000000
--- a/sci-libs/ipp/Manifest
+++ /dev/null
@@ -1,9 +0,0 @@
-DIST l_ipp_em64t_p_5.2.059.tgz 161964579 RMD160 4e0f4df68d09380f5b8644c366e57813b3ef9fde SHA1 43559dabac3eed24b5a94dc00559466aba885799 SHA256 f71f632f02f307c5e0e38e953184ea286ca2d90c4624dbd205701f9e268ff9a8
-DIST l_ipp_ia32_p_5.2.059.tgz 213000994 RMD160 598e3d92e933546b3e143538985d922624a4335a SHA1 bcf11196a760e54713f59a8a06f58f0a31937853 SHA256 cf7f39231cd56cc04fae8e91cc5c10be155f49a284076714252a3d8d5cce5cac
-EBUILD ipp-5.2.059.ebuild 3067 RMD160 87d32f2a9af22b351678366ea91c511a65a8f5b6 SHA1 9eac1f09b14902f1ed4d698cceef5396b1ea3c52 SHA256 5585f06728555afcf6d8c3262133f0abd74738d8bda5b1573a5cb38462800b4d
-MD5 4c848f2e1ee66583883f14942bf6c8f5 ipp-5.2.059.ebuild 3067
-RMD160 87d32f2a9af22b351678366ea91c511a65a8f5b6 ipp-5.2.059.ebuild 3067
-SHA256 5585f06728555afcf6d8c3262133f0abd74738d8bda5b1573a5cb38462800b4d ipp-5.2.059.ebuild 3067
-MD5 423a9939e4b92c72158379952dcbb153 files/digest-ipp-5.2.059 527
-RMD160 783b292f0d7d6fe1d7481b654d2c187a80c68949 files/digest-ipp-5.2.059 527
-SHA256 c6108bfd4cfa428678753d98c9247449665b6a86ccf80f38c9c87810af128ed0 files/digest-ipp-5.2.059 527
diff --git a/sci-libs/ipp/files/digest-ipp-5.2.059 b/sci-libs/ipp/files/digest-ipp-5.2.059
deleted file mode 100644
index 106daa33e..000000000
--- a/sci-libs/ipp/files/digest-ipp-5.2.059
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 f6d2daeec931c5b5af2ba039048e6a4e l_ipp_em64t_p_5.2.059.tgz 161964579
-RMD160 4e0f4df68d09380f5b8644c366e57813b3ef9fde l_ipp_em64t_p_5.2.059.tgz 161964579
-SHA256 f71f632f02f307c5e0e38e953184ea286ca2d90c4624dbd205701f9e268ff9a8 l_ipp_em64t_p_5.2.059.tgz 161964579
-MD5 38579c892a5f3a29d28fa5b98e55c112 l_ipp_ia32_p_5.2.059.tgz 213000994
-RMD160 598e3d92e933546b3e143538985d922624a4335a l_ipp_ia32_p_5.2.059.tgz 213000994
-SHA256 cf7f39231cd56cc04fae8e91cc5c10be155f49a284076714252a3d8d5cce5cac l_ipp_ia32_p_5.2.059.tgz 213000994
diff --git a/sci-libs/ipp/ipp-5.2.059.ebuild b/sci-libs/ipp/ipp-5.2.059.ebuild
deleted file mode 100644
index a1ba11716..000000000
--- a/sci-libs/ipp/ipp-5.2.059.ebuild
+++ /dev/null
@@ -1,114 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit versionator rpm multilib
-
-PID=721
-PB=${PN}
-DESCRIPTION="Intel(R) Integrated Performance Primitive library for multimedia and data processing"
-HOMEPAGE="http://developer.intel.com/software/products/ipp/"
-
-KEYWORDS="~amd64 ~x86"
-SRC_URI="amd64? ( http://registrationcenter-download.intel.com/irc_nas/${PID}/l_${PB}_em64t_p_${PV}.tgz )
- x86? ( http://registrationcenter-download.intel.com/irc_nas/${PID}/l_${PB}_ia32_p_${PV}.tgz )"
-
-MAJOR=$(get_major_version ${PV})
-MINOR=$(get_version_component_range 2 ${PV})
-
-SLOT="${MAJOR}.${MINOR}"
-LICENSE="${PN}-${MAJOR}.${MINOR}"
-
-IUSE=""
-RESTRICT="strip mirror"
-
-pkg_setup() {
- # setting up license
- [[ -z "${IPP_LICENSE}" ]] && [[ -d /opt/intel/licenses ]] && \
- IPP_LICENSE="$(find /opt/intel/licenses -name *IPP*.lic)"
-
- if [[ -z "${IPP_LICENSE}" ]]; then
- eerror "Did not find any valid ipp license."
- eerror "Please locate your license file and run:"
- eerror "\t IPP_LICENSE=/my/license/dir emerge ${PN}"
- eerror "or place your license in /opt/intel/licenses"
- eerror "Hint: the license file is in the email Intel sent you"
- die "setup ipp license failed"
- fi