diff options
| -rw-r--r-- | sci-biology/sga/sga-9999.ebuild | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild index 38212a3e2..8ec029f94 100644 --- a/sci-biology/sga/sga-9999.ebuild +++ b/sci-biology/sga/sga-9999.ebuild @@ -19,6 +19,7 @@ DEPEND="dev-cpp/sparsehash sys-libs/zlib jemalloc? ( dev-libs/jemalloc )" RDEPEND="${DEPEND} + sci-biology/abyss python? ( sci-biology/pysam sci-biology/ruffus )" @@ -30,7 +31,14 @@ src_configure(){ } src_compile(){ - cd src || die + # https://github.com/AlgoLab/FastStringGraph/issues/1#issuecomment-345999596 + # https://github.com/jts/sga/issues/106 + # https://github.com/jts/sga/pull/110 + # https://github.com/jts/sga/issues/108 + # + # other unreviewed patches: + # https://github.com/jts/sga/issues/96 + cd src || die "Try -atd=g++-98, try gcc-5 or -std=c++03" default } |