From 28a4553de32754b0a5bba92424537bb31bd72e1f Mon Sep 17 00:00:00 2001
From: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Mon, 1 Feb 2021 10:14:09 +0100
Subject: sci-biology/Trinotate: version bump 3.2.1

no keywords, because dep trinityrnaseq is missing them

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
---
 sci-biology/Trinotate/Manifest               |  2 +-
 sci-biology/Trinotate/Trinotate-2.0.1.ebuild | 44 ---------------------------
 sci-biology/Trinotate/Trinotate-3.2.1.ebuild | 45 ++++++++++++++++++++++++++++
 3 files changed, 46 insertions(+), 45 deletions(-)
 delete mode 100644 sci-biology/Trinotate/Trinotate-2.0.1.ebuild
 create mode 100644 sci-biology/Trinotate/Trinotate-3.2.1.ebuild

diff --git a/sci-biology/Trinotate/Manifest b/sci-biology/Trinotate/Manifest
index 9fa9b8c64..30ecd61fa 100644
--- a/sci-biology/Trinotate/Manifest
+++ b/sci-biology/Trinotate/Manifest
@@ -1 +1 @@
-DIST Trinotate-2.0.1.tar.gz 29226683 BLAKE2B 427b9deb88729b870bca2b617af5cc14a4e2cfcee0e300eef35013e851c58009e1ac6ca3f5d699ea133aec2ab6a2b0de98df09d763a349c58d3fd8990db37a40 SHA512 389ae53c53910b26cc78578cd3803cf14925964e2209e1baabdce78f3a2a73d064f6484e0355cc9597f4cd13ec09ba93da97b19cdc5646fb9f8f4ab91fbc98db
+DIST Trinotate-3.2.1.tar.gz 29794455 BLAKE2B b630b4750540aeefaed598d34038ebc4bf0147f998d9a45038759b1f02cd210835b88cdc7e8e5b8e194ade05b410f8e76ea562c09dcbf09bfa56cfffafa207c3 SHA512 0c2c5021156651644cfcec09bdd19f45c4dd5ab5dd63effbacca3ffc13a32ff3b2050d8fe860e4302ade142f350c895303925542aa730c16abe0721654f8cad7
diff --git a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild b/sci-biology/Trinotate/Trinotate-2.0.1.ebuild
deleted file mode 100644
index 13dd775aa..000000000
--- a/sci-biology/Trinotate/Trinotate-2.0.1.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit perl-module eutils toolchain-funcs
-
-DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes"
-HOMEPAGE="http://trinotate.github.io"
-SRC_URI="https://github.com/Trinotate/Trinotate/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-BroadInstitute"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	sci-biology/ncbi-tools++
-	sci-biology/trinityrnaseq
-	sci-biology/TransDecoder"
-
-# http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer
-# >=sci-biology/rnammer-2.3.2
-#
-# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp
-# >=sci-biology/signalp-4
-#
-# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm
-
-# We suggest you rename this version of hmmsearch from hmmer-2 package to 'hmmsearch2'.
-# In the 'rnammer' software configuration, edit the rnammer script to point
-# $HMMSEARCH_BINARY = "/path/to/hmmsearch2";
-
-src_install(){
-	perl_set_version
-	dobin Trinotate
-	insinto /usr/share/"${PN}"
-	doins -r admin java sample_data util TrinotateWeb
-	insinto ${VENDOR_LIB}/${PN}
-	doins -r PerlLib/*
-	dodoc Release.Notes
-}
diff --git a/sci-biology/Trinotate/Trinotate-3.2.1.ebuild b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
new file mode 100644
index 000000000..85807d4a0
--- /dev/null
+++ b/sci-biology/Trinotate/Trinotate-3.2.1.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit perl-module toolchain-funcs
+
+DESCRIPTION="Annotation and analysis pipeline for de novo assembled transcriptomes"
+HOMEPAGE="https://github.com/Trinotate/Trinotate.github.io/wiki"
+SRC_URI="https://github.com/Trinotate/Trinotate/archive/${PN}-v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-BroadInstitute"
+SLOT="0"
+KEYWORDS=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sci-biology/ncbi-tools++
+	sci-biology/trinityrnaseq
+	sci-biology/TransDecoder
+"
+
+# http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer
+# >=sci-biology/rnammer-2.3.2
+#
+# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?signalp
+# >=sci-biology/signalp-4
+#
+# http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm
+
+# We suggest you rename this version of hmmsearch from hmmer-2 package to 'hmmsearch2'.
+# In the 'rnammer' software configuration, edit the rnammer script to point
+# $HMMSEARCH_BINARY = "/path/to/hmmsearch2";
+
+S="${WORKDIR}/${PN}-${PN}-v${PV}"
+
+src_install(){
+	perl_set_version
+	dobin Trinotate
+	insinto /usr/share/"${PN}"
+	doins -r admin sample_data util TrinotateWeb
+	insinto ${VENDOR_LIB}/${PN}
+	doins -r PerlLib/*
+	dodoc notes README.md README.txt Changelog.txt
+}
-- 
cgit v1.2.3-65-gdbad