From 3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0 Mon Sep 17 00:00:00 2001
From: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue, 31 Mar 2015 18:19:08 +0200
Subject: sci-biology/abacas: new package

Package-Manager: portage-2.2.18
---
 sci-biology/abacas/ChangeLog           |  9 +++++++++
 sci-biology/abacas/Manifest            |  1 +
 sci-biology/abacas/abacas-1.3.1.ebuild | 33 +++++++++++++++++++++++++++++++++
 sci-biology/abacas/metadata.xml        |  9 +++++++++
 4 files changed, 52 insertions(+)
 create mode 100644 sci-biology/abacas/ChangeLog
 create mode 100644 sci-biology/abacas/Manifest
 create mode 100644 sci-biology/abacas/abacas-1.3.1.ebuild
 create mode 100644 sci-biology/abacas/metadata.xml

diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog
new file mode 100644
index 000000000..7f3ad388a
--- /dev/null
+++ b/sci-biology/abacas/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/abacas
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*abacas-1.3.1 (31 Mar 2015)
+
+  31 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +abacas-1.3.1.ebuild, +metadata.xml:
+  sci-biology/abacas: new package
diff --git a/sci-biology/abacas/Manifest b/sci-biology/abacas/Manifest
new file mode 100644
index 000000000..f95aff4f7
--- /dev/null
+++ b/sci-biology/abacas/Manifest
@@ -0,0 +1 @@
+DIST abacas.1.3.1.pl 64936 SHA256 0afee209a4f879987b320e2f882bc0eab540a7a712a81a5f01b9795d2749310d SHA512 5b60f85439ab751e4b43eba827dc8b4a8ad7d3acbbdc1f13a0f83e227cf8eb4d94dd5a32c4e6e37aa4e263758973ada5ab8e476685c56b6856c06218b547f76f WHIRLPOOL 5b99ee3aab66f06ccd74f4393dff42f1525a8b2c2c7679dfde180bb2262dd4c9d2d3a45585ed39d10f38c6f53d3b3089be9c65ee1b22d90938fcc09c8da14500
diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild
new file mode 100644
index 000000000..e44862d18
--- /dev/null
+++ b/sci-biology/abacas/abacas-1.3.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Order and orientate contigs, design primers for gap closing"
+HOMEPAGE="http://abacas.sourceforge.net"
+SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl"
+
+LICENSE="GPL-2+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-lang/perl
+	sci-biology/mummer"
+
+S="${WORKDIR}"
+
+src_prepare(){
+	cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die
+	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die
+}
+src_install(){
+	dobin abacas.pl
+}
+
+pkg_postinst(){
+	einfo "To view the results use Artemis ACT (sci-biology/artemis)"
+}
diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
new file mode 100644
index 000000000..2bc893037
--- /dev/null
+++ b/sci-biology/abacas/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>
-- 
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