From d0ba0e33274628d86bfa3ace5efc31c0821487cd Mon Sep 17 00:00:00 2001
From: Alexey Shvetsov <alexxy@gentoo.org>
Date: Tue, 29 Oct 2019 12:09:25 +0300
Subject: sci-chemistry/MotionCor2: Add motioncor2

Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
---
 sci-chemistry/MotionCor2/Manifest                |  1 +
 sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild | 49 ++++++++++++++++++++++++
 sci-chemistry/MotionCor2/metadata.xml            | 16 ++++++++
 3 files changed, 66 insertions(+)
 create mode 100644 sci-chemistry/MotionCor2/Manifest
 create mode 100644 sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild
 create mode 100644 sci-chemistry/MotionCor2/metadata.xml

diff --git a/sci-chemistry/MotionCor2/Manifest b/sci-chemistry/MotionCor2/Manifest
new file mode 100644
index 000000000..092136ca6
--- /dev/null
+++ b/sci-chemistry/MotionCor2/Manifest
@@ -0,0 +1 @@
+DIST MotionCor2_1.2.6.zip 1781089 BLAKE2B cfb210948cc24824e353f5725aa710d0ca41b7c68fb65e6f3f9c3386d59c6359b87bc71f087d2f8429afea13fba8645f554a6a2b365ff6d47722ed0d7c95c49b SHA512 165085e635a03ff89d5f8d32e2b1edf7ab8c4ac7839cd9b83cb8d0b6a6a6a1c606554e969c0848681a51757bc927088513b8ccdf28b5d8a42ff69aa746b30a7f
diff --git a/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild b/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild
new file mode 100644
index 000000000..8fae639a3
--- /dev/null
+++ b/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild
@@ -0,0 +1,49 @@
+# Copyright 2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="Correction of electron beam-induced sample motion"
+HOMEPAGE="https://emcore.ucsf.edu/ucsf-motioncor2"
+SRC_URI="${PN}_${PV}.zip"
+
+LICENSE="UCSF-Motioncor2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda92 +cuda101"
+
+DEPEND="
+	cuda92? ( =dev-util/nvidia-cuda-toolkit-9.2* )
+	cuda101? ( =dev-util/nvidia-cuda-toolkit-10.1* )
+	media-libs/tiff
+	app-arch/xz-utils
+	|| ( media-libs/jpeg:62 media-libs/libjpeg-turbo )
+"
+RDEPEND="${DEPEND}"
+BDEPEND=""
+
+REQUIRED_USE="^^ ( cuda92 cuda101 )"
+
+RESTRICT="fetch"
+VERSION="MotionCor2 v1.2.6 (05-22.2019, Linux) now Cuda v8.0,9.2,10.1"
+
+S="${WORKDIR}"
+
+pkg_nofetch() {
+		echo
+		elog "Please download ${PN}_${PV}.zip from"
+		elog "${HOMEPAGE}."
+		elog "Be sure to select the version ${VERSION} tarball!!"
+		elog "Then move the tarball to"
+		elog "${DISTDIR}/${P}.tar.gz"
+		echo
+}
+
+src_install() {
+	dodoc MotionCor2-UserManual-09-13-2018.pdf
+	if use cuda92; then
+		newbin MotionCor2_1.2.6-Cuda92 ${PN}
+	elif use cuda101; then
+		newbin MotionCor2_1.2.6-Cuda101 ${PN}
+	fi
+}
diff --git a/sci-chemistry/MotionCor2/metadata.xml b/sci-chemistry/MotionCor2/metadata.xml
new file mode 100644
index 000000000..75c4f5d9f
--- /dev/null
+++ b/sci-chemistry/MotionCor2/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-chemistry@gentoo.org</email>
+		<name>Gentoo Chemistry Project</name>
+	</maintainer>
+	<maintainer type="person">
+		<email>alexxy@gentoo.org</email>
+		<name>Alexey Shvetsov</name>
+	</maintainer>
+	<use>
+		<flag name="cuda92">Install cuda-9.2 version</flag>
+		<flag name="cuda101">Install cuda-10.1 version</flag>
+	</use>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad