From d4d0d1524160afa9709b58edeb13c0dd1eff7c9f Mon Sep 17 00:00:00 2001
From: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Mon, 1 Feb 2021 05:51:13 +0100
Subject: sci-biology/scaffold_builder: drop pack, py2 only

checked the code, and this is still py2 style

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
---
 sci-biology/scaffold_builder/Manifest              |  3 --
 sci-biology/scaffold_builder/metadata.xml          | 15 ---------
 .../scaffold_builder/scaffold_builder-2.2.ebuild   | 39 ----------------------
 3 files changed, 57 deletions(-)
 delete mode 100644 sci-biology/scaffold_builder/Manifest
 delete mode 100644 sci-biology/scaffold_builder/metadata.xml
 delete mode 100644 sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild

diff --git a/sci-biology/scaffold_builder/Manifest b/sci-biology/scaffold_builder/Manifest
deleted file mode 100644
index a78b28651..000000000
--- a/sci-biology/scaffold_builder/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST Manual_v2.1.pdf 25897 BLAKE2B 8a5a54609554904e8c29102df6588c7b4ea50e69bebf286ebb0e6c7fcca497ab4f0d7642e36458b3776ac0d2df50f9ad8ae6838a47f21eda79c53c12d0f273c1 SHA512 48ba5fcd33ba7585c970d29df477686afe19ed0d0d30184661cab3ac10e39fdbce6174ec85a126c18eac038c62464068b5c012a70ca256c9ec5c7ef4032710ab
-DIST scaffold_builder_v2.2.zip 20963 BLAKE2B ffd21d3d353cc075507fd23b98c36f085992abcd365d725d6251f15f049e2de39bd287a60c14d1788d135dbad3deac38c39fb11c62c2a9f01f3a1f3ab10ab8c1 SHA512 cb728a705f82324cf45674252e7d47413f4a70d728d147a7421335ae836d9d209b8f6b0c4b0ae10ce3ba9b2ab7928a0c6c63a58fae53b05c66578579faec029c
-DIST scaffold_builder_v2_help.doc 50176 BLAKE2B 2b49f43a89c58045f67adc48b8ba3b91325e9d8bf9bb22b4048d60dfebb39a5d3acea54813fe84bce78fa91dbeb2898923cc67e7acdf3aaff7bdb32ef1cc4758 SHA512 1c3fdf085864a9a1cf684578af468166e4034c55a5576ab3d190443c323272152dcc19678d509cb2cccb3aac15570861f7483f4400638c8ef5af7aa1a6689ff2
diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
deleted file mode 100644
index 0f267b755..000000000
--- a/sci-biology/scaffold_builder/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">downloads</remote-id>
-	</upstream>
-</pkgmetadata>
diff --git a/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild b/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild
deleted file mode 100644
index 9f60e82c6..000000000
--- a/sci-biology/scaffold_builder/scaffold_builder-2.2.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-r1
-
-DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds"
-HOMEPAGE="
-	https://sourceforge.net/projects/scaffold-b
-	https://edwards.sdsu.edu/scaffold_builder"
-SRC_URI="
-	https://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v${PV}.zip
-	https://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc
-	https://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
-	sci-biology/mummer"
-DEPEND="${RDEPEND}"
-BDEPEND="app-arch/unzip"
-
-S="${WORKDIR}"
-
-src_install(){
-	echo "#! /usr/bin/env python" > scaffold_builder.pyy || die
-	cat scaffold_builder.py >> scaffold_builder.pyy || die
-	mv scaffold_builder.pyy scaffold_builder.py || die
-	python_foreach_impl python_doscript scaffold_builder.py
-	dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc
-	newdoc "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder.pdf
-}
-- 
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