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# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
inherit versionator toolchain-funcs
MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
HOMEPAGE="http://zlab.bu.edu/clover/"
SRC_URI="http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz http://zlab.bu.edu/clover/jaspar2005core"
LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~x86"
DEPEND=""
RDEPEND=""
S="${WORKDIR}/${PN}-${MY_PV}"
src_unpack() {
unpack ${PN}-${MY_PV}.tar.gz
}
src_compile() {
sed -i "s:g++:$(tc-getCXX):; s:-Wall -O3:${CFLAGS}:" Makefile || die "sed failed"
emake || die "emake failed"
}
src_install() {
dobin clover
dodir "/usr/share/${PN}"
insinto "/usr/share/${PN}"
doins ${DISTDIR}/jaspar2005core || die
}
pkg_postinst() {
einfo "The motif library jaspar2005core has been installed in"
einfo " /usr/share/clover/jaspar2005core"
einfo "You can pass this library to clover for motif search, or use your own library."
}
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