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authorMark Wright <gienah@gentoo.org>2020-05-23 22:34:01 +1000
committerMark Wright <gienah@gentoo.org>2020-05-23 22:42:05 +1000
commit03406d4343f6bf8e63fcc86bfc6264cdb429fefb (patch)
treef4d1d3915223c76b2305d9e8530dac3c53e0e00a
parentdev-db/mariadb: bump to v5.5.68 (diff)
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sci-mathematics/rstudio: Remove old
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
-rw-r--r--sci-mathematics/rstudio/Manifest13
-rw-r--r--sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch18
-rw-r--r--sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch60
-rw-r--r--sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch45
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch130
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch76
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch38
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch143
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch460
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch220
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch167
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch46
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch13
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch31
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch13
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch32
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch118
-rw-r--r--sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch53
-rw-r--r--sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild255
-rw-r--r--sci-mathematics/rstudio/rstudio-1.2.1335.ebuild254
20 files changed, 0 insertions, 2185 deletions
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index 314a334a3e7..6821cacc59b 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -1,16 +1,3 @@
-DIST chromedriver-linux 19303552 BLAKE2B 610396fd74f2adc4c249ca971a53a6dd4ab06145d0b37d59adf66180dfada52192b20203bf3d992c270bd4f787df5c85511ca325aed06cbd9318add3eccfde30 SHA512 18774ede961dec222058dd0e3f128d63732cd444ee310136b44d5bf508a4f2f2c164a2c8d195d80bce8b5fb6303559e167f82f384e4a58e30f48b151a4206ee8
DIST core-dictionaries.zip 876339 BLAKE2B f29afcbf5a7f8ec635e5a5b248d978af286d18488f54c9a09a2b95fde19b796e4473e5846402a46dd24b71c6e4167512539aaa32ab6d99713d500a80aaf46796 SHA512 9c5830cc9fed575e223f1c61f02e48c5aea6801bb0cd2586f02437c17fdffdb1d36c396d5a8ecbe02ba01196e73458304345b1f6b92c052bc7a7d05961fac2c9
-DIST gin-1.5.zip 1055663 BLAKE2B 11b86245d54967f0c76f22f7460fb752c410db3c59a019bb538a48fd0de7e87552f2f5bb9ce604e6ed508136a6a2b0814f061161579429daae8ca55b1a448114 SHA512 3f6649565f9600daaca6ddf3fb431925b5a1ce1ada38e6389de64cef617abba9d3f49c555d0a20053fb06f17ccbe4e1141b39966fbe4b2975d7b120377504897
-DIST gin-2.1.2.zip 1341053 BLAKE2B 515338ba50ba2183c101b42183e42ebf15613aae8751a0dcedb4b047de4ca8fab85eb240f5f0c92955441dbb87e80b3edbdae8d83f1e74f74c7de067d18cf108 SHA512 03407b6318ffb0dd504ce520649ed90e845f13fbdbd0bfb4d7e3b127842f1735093e39674077c3a04a11d434aefdc3a734652c3f85e8ab00ff37ae760ccb8dbb
-DIST gwt-2.7.0.zip 108818328 BLAKE2B 9af969f3f2577be041fcfb58f228fab4b5479fa0da5ff054ab0a59cad751590a1b4ae8d7fabc8a50e3b0e5d7eb9b2896c485d929421f75e6a2f6513480438a31 SHA512 a1eed5cc25c888cf81d4f22b1f9494d5d8567b911f7aeb1d164a6359120543668280afe1a3ffc9ed87b139c7db67fbcaaabde2066e3279909d7cd6fc22eaf499
-DIST gwt-2.8.1.zip 95650299 BLAKE2B 3853d50d1346e313903b6f0c4b8405ce9e896e51652483e5c7e9d711daa213e1341c71765b4a3fb061b58f90d49420245963a0480db8b71fe7aed6cd43782c14 SHA512 feeb00cb0413c2703dfd6931f57ba669813bd65f814715f2c04dd6dc69e885a8048337272333d7504c48e9fa52cdab699f854ee13211228ab142a1f458ee33ae
-DIST packrat-0.98.1000.tar.gz 97677 BLAKE2B 282fe33dc5ba366ceea05a222ae2d018bc3ad8f35fad73c585a3d4901c3287e6902277a9c7ca087854f3944bd85ff1b1d1f02869ece686b10f946e2f1cb1296c SHA512 2290c768ecf27a037e73c3f8336b9fd71c68ff19d071b4a8fbc469550d29007cacacdb75f854f73b5db2139a5104f129b85a3612e2ee47bd6118ee13f7d103a6
-DIST rmarkdown-0.98.1000.tar.gz 1423820 BLAKE2B eac8c9cf438c9b44ddfe954602dd67a83764b0c988b3ba571877c986b0d5d237059ed6643a86bb404428857ec8c346bfecd12f7cd15cde301cb0ce331f842b7f SHA512 df3540c24c87930fe55bff2ffe67c86c219800cb00ed72ba9451ecd0d0cad411548a78c1a04b9a2e301e853616dcb77e09129c4e48ade6f16d3f14b7ea7e4852
-DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 BLAKE2B 1f3f9fe71d7b50ab5108dfdbd3cc0b882bcc935ee58e8a9145b07a18bb86c39bc45e321a13add24df99492bc30548df716775c339bcbf4efc2bfe158299ae55a SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade
-DIST rstudio-1.1.463.tar.gz 20203779 BLAKE2B 97f879539cbb7051af362a8469795a47feb42d18ff46dbbdffe36e0685d1cd5704848b3bf5a5611d482a09567722e35288527302cd521b18e2a48b347c919e17 SHA512 987347563a9726363c28d866e1372eae8eb19a5cbd0e33c7ee0e0c8f90471c4b69de0f559c00410523841b6c090b584652e01496f5db33c015a4554d2f4e179b
-DIST rstudio-1.2.1335.tar.gz 20440199 BLAKE2B cdd54a7df5a234bcc6d440f4ba5b45e58ea469f8dac5a17d9088f9d65035495c86b5a308cde28a224648f96a74038299863291f3c516a1d567762ecc5bfb079c SHA512 90657effc55264bf3efa1a8a5d2bbe94a37727f0450202ade99b9fbb71ea75b6dd9fa798d17cd4d1a1a97a16f186de8004d1888b6ea43f36d5252508520d3cde
DIST rstudio-1.2.5033.tar.gz 20456976 BLAKE2B 3cbca6a5180690104dddf1456168bd38708d4152ed9b7a167035dd66e270aeb6405169d34461cbd899738be1872607e3f3b6f81ff0b3c9e6a9ed965a889b1393 SHA512 3569d4fed342275a9905c87e4f97be63b6391d2c37f75397e06201a7c31f80d94799214f51ff8e57d458ef18d5e54afe1ec8a7c56ac05ed8b8225ecca72d1daf
DIST rstudio-1.2.5042.tar.gz 20456999 BLAKE2B 3251ab2511daefefa395256fedb273ecc36dbc8118457474e3647f7616baea91301e597896582ad4b191195fc7baf17645c4c25b9a957a0c17a6251151b1dd87 SHA512 e09f2360abecde0c16e240e6838efb270a355bec3d3982ffde2b01b32b21e9281fef465734edbfeb5e05375529cc7f06d5b5d41304f367982f53ae7ad98e20f9
-DIST selenium-java-2.37.0.zip 24625928 BLAKE2B b369a805ae96f0d0913c4be42888d9c2a1e213ff982f9daefe73fadb705baa80ab0186ab50ed52609e83697cffaf8d617d06d75405cb8e1c3fe8e7c5b81dba25 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779
-DIST selenium-server-standalone-2.37.0.jar 34730734 BLAKE2B 3899b1d4c5f9153c1f9f13bec66f7c1456ea2e0f34db7d8e54a1ce9063c33a05b3cf95216c2ae06bb40504f72f343a4b9ba6c8553fbbc340e7c18a5b612dde5c SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018
-DIST shinyapps-0.98.1000.tar.gz 910095 BLAKE2B 4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c
diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch b/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch
deleted file mode 100644
index a336fccbc98..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-Some gcc hardening options were added, however since we add
-"-Wl,--as-needed" we end up with "-Wl,--as-needed;-Wl,-z,relro" which
-leads to linker errors about unknown options, if we make it so the
-as-needed option is the last option on the line, everything is fine.
-
-diff --git a/src/cpp/CMakeLists.txt b/src/cpp/CMakeLists.txt
-index 0589ca0..fe5bd5f 100644
---- a/src/cpp/CMakeLists.txt
-+++ b/src/cpp/CMakeLists.txt
-@@ -57,7 +57,7 @@ if(UNIX)
- add_definitions(-D_FORTIFY_SOURCE=2)
- add_definitions(-fstack-protector --param ssp-buffer-size=4)
- add_definitions(-pie -fPIE)
-- set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,-z,relro,-z,now")
-+ set(CMAKE_EXE_LINKER_FLAGS "-Wl,-z,relro,-z,now ${CMAKE_EXE_LINKER_FLAGS}")
- endif()
-
- # Win32 specific global directives
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch b/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch
deleted file mode 100644
index bf66bd23678..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch
+++ /dev/null
@@ -1,60 +0,0 @@
---- rstudio-0.99.473-orig/src/cpp/desktop/CMakeLists.txt 2015-08-12 09:58:43.000000000 +1000
-+++ rstudio-0.99.473/src/cpp/desktop/CMakeLists.txt 2015-08-30 23:16:11.396175587 +1000
-@@ -93,7 +93,12 @@
- find_package(Qt5DBus REQUIRED)
- endif()
-
--
-+find_path(QTSINGLEAPPLIB_INCLUDE_DIR NAMES QtSingleApplication
-+ PATH_SUFFIXES QtSolutions
-+ PATHS
-+ /usr/include/qt5)
-+find_library(QTSINGLEAPPLIB Qt5Solutions_SingleApplication-2.6
-+ libQt5Solutions_SingleApplication-2.6)
-
- # disable clang warnings for qt sources
- if(APPLE)
-@@ -113,7 +118,6 @@
-
- set(MOC_DESKTOP_HEADER_FILES ${DESKTOP_HEADER_FILES})
- list(REMOVE_ITEM MOC_DESKTOP_HEADER_FILES
-- ${CMAKE_CURRENT_SOURCE_DIR}/3rdparty/qtsingleapplication/qtlockedfile.h
- ${CMAKE_CURRENT_SOURCE_DIR}/DesktopDetectRHome.hpp
- ${CMAKE_CURRENT_SOURCE_DIR}/DesktopOptions.hpp
- ${CMAKE_CURRENT_SOURCE_DIR}/DesktopRVersion.hpp
-@@ -175,8 +179,6 @@
- DesktopSubMenu.cpp
- DesktopSynctex.cpp
- DesktopNetworkAccessManager.cpp
-- 3rdparty/qtsingleapplication/qtsingleapplication.cpp
-- 3rdparty/qtsingleapplication/qtlocalpeer.cpp
- )
-
- if(WIN32)
-@@ -219,6 +221,7 @@
- ${CORE_SOURCE_DIR}/include
- ${CMAKE_CURRENT_SOURCE_DIR}
- ${CMAKE_CURRENT_BINARY_DIR}
-+ ${QTSINGLEAPPLIB_INCLUDE_DIR}
- ${TESTS_INCLUDE_DIR}
- )
-
-@@ -332,6 +335,7 @@
-
- # set link dependencies
- target_link_libraries(rstudio
-+ ${QTSINGLEAPPLIB}
- ${QT_LIBRARIES}
- rstudio-core
- ${LINK_FLAGS}
---- rstudio-0.99.473-orig/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-12 09:58:43.000000000 +1000
-+++ rstudio-0.99.473/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-30 21:41:21.616934106 +1000
-@@ -16,7 +16,7 @@
- #ifndef DESKTOP_POSIX_APPLICATION_HPP
- #define DESKTOP_POSIX_APPLICATION_HPP
-
--#include "3rdparty/qtsingleapplication/QtSingleApplication"
-+#include <QtSingleApplication>
-
- namespace rstudio {
- namespace desktop {
diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch b/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch
deleted file mode 100644
index 483613cc5c0..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch
+++ /dev/null
@@ -1,45 +0,0 @@
---- rstudio-0.99.879-orig/src/gwt/build.xml 2016-02-12 09:24:39.000000000 +1100
-+++ rstudio-0.99.879/src/gwt/build.xml 2016-02-20 00:25:39.458756693 +1100
-@@ -25,6 +25,7 @@
- <property name="gwt.extra.args" value=""/>
- <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
- <property name="ace.bin" value="src/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
-+ <property environment="env"/>
-
- <path id="project.class.path">
- <pathelement location="bin"/>
-@@ -101,8 +102,10 @@
- <pathelement location="src"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
- <jvmarg value="-Xmx1536M"/>
-+ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
- <arg value="-war"/>
- <arg value="www"/>
- <arg value="-localWorkers"/>
-@@ -142,6 +145,7 @@
- <pathelement location="src"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <jvmarg value="-Xmx2048M"/>
- <arg value="-war"/>
- <arg value="www"/>
-@@ -163,6 +167,7 @@
- <pathelement location="src"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <jvmarg value="-Xmx2048M"/>
- <arg value="-src"/>
- <arg value = "src"/>
-@@ -194,6 +199,7 @@
- <pathelement location="src"/>
- <path refid="test.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <arg value="org.rstudio.studio.selenium.RStudioTestSuite"/>
- </java>
- </sequential>
diff --git a/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch
deleted file mode 100644
index b2a1a33b44c..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch
+++ /dev/null
@@ -1,130 +0,0 @@
---- rstudio-1.0.44-orig/CMakeGlobals.txt 2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/CMakeGlobals.txt 2016-12-01 23:33:04.149326324 +1100
-@@ -123,7 +123,7 @@
- else()
- set(RSTUDIO_INSTALL_BIN bin)
- endif()
-- set(RSTUDIO_INSTALL_SUPPORTING .)
-+ set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
- endif()
-
- # if the install prefix is /usr/local then tweak as appropriate
---- rstudio-1.0.44-orig/src/cpp/server/CMakeLists.txt 2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/src/cpp/server/CMakeLists.txt 2016-12-01 23:35:51.634862018 +1100
-@@ -155,7 +155,7 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
-- DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
-
- # install configured redhat init.d script
- set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
-@@ -163,7 +163,7 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
-- DESTINATION ${RSERVER_INITD_REDHAT_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
-
- # install configured suse init.d script
- set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
-@@ -171,13 +171,13 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
-- DESTINATION ${RSERVER_INITD_SUSE_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
-
- # install pam profile
- set(RSERVER_PAM_DIR "extras/pam")
- set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
- install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
-- DESTINATION ${RSERVER_PAM_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
-
- # install configured apparmor profile
- set(RSERVER_APPARMOR_DIR "extras/apparmor")
-@@ -185,9 +185,9 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_PROFILE}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE})
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE}
-- DESTINATION ${RSERVER_APPARMOR_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
- install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_DIR}/apparmor-profile-load
-- DESTINATION ${RSERVER_APPARMOR_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR})
-
- # install configured upstart profile
- set(RSERVER_UPSTART_DIR "extras/upstart")
-@@ -195,12 +195,12 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
-- DESTINATION ${RSERVER_UPSTART_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
- set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
-- DESTINATION ${RSERVER_UPSTART_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
-
- # install configured systemd profile
- set(RSERVER_SYSTEMD_DIR "extras/systemd")
---- rstudio-1.0.44-orig/src/cpp/server/ServerOptions.cpp 2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/src/cpp/server/ServerOptions.cpp 2016-12-01 23:33:04.151326331 +1100
-@@ -386,8 +386,8 @@
-
- // convert relative paths by completing from the system installation
- // path (this allows us to be relocatable)
-- resolvePath(resourcePath, &wwwLocalPath_);
-- resolvePath(resourcePath, &wwwSymbolMapsPath_);
-+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
-+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
- resolvePath(binaryPath, &authPamHelperPath_);
- resolvePath(binaryPath, &rsessionPath_);
- resolvePath(binaryPath, &rldpathPath_);
---- rstudio-1.0.44-orig/src/cpp/session/SessionOptions.cpp 2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/src/cpp/session/SessionOptions.cpp 2016-12-01 23:33:04.151326331 +1100
-@@ -49,7 +49,7 @@
- namespace session {
-
- namespace {
--const char* const kDefaultPandocPath = "bin/pandoc";
-+const char* const kDefaultPandocPath = "bin";
- const char* const kDefaultPostbackPath = "bin/postback/rpostback";
- const char* const kDefaultRsclangPath = "bin/rsclang";
-
-@@ -481,14 +481,14 @@
- }
-
- // convert relative paths by completing from the app resource path
-- resolvePath(resourcePath_, &rResourcesPath_);
-- resolvePath(resourcePath_, &agreementFilePath_);
-- resolvePath(resourcePath_, &wwwLocalPath_);
-- resolvePath(resourcePath_, &wwwSymbolMapsPath_);
-- resolvePath(resourcePath_, &coreRSourcePath_);
-- resolvePath(resourcePath_, &modulesRSourcePath_);
-- resolvePath(resourcePath_, &sessionLibraryPath_);
-- resolvePath(resourcePath_, &sessionPackageArchivesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
- resolvePostbackPath(resourcePath_, &rpostbackPath_);
- #ifdef _WIN32
- resolvePath(resourcePath_, &consoleIoPath_);
-@@ -498,7 +498,7 @@
- resolvePath(resourcePath_, &sumatraPath_);
- resolvePath(resourcePath_, &winutilsPath_);
- #endif
-- resolvePath(resourcePath_, &hunspellDictionariesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
- resolvePath(resourcePath_, &mathjaxPath_);
- resolvePath(resourcePath_, &libclangHeadersPath_);
- resolvePandocPath(resourcePath_, &pandocPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch
deleted file mode 100644
index 28b0220912a..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch
+++ /dev/null
@@ -1,76 +0,0 @@
-Index: rstudio-1.1.357/src/cpp/session/CMakeLists.txt
-===================================================================
---- rstudio-1.1.357.orig/src/cpp/session/CMakeLists.txt
-+++ rstudio-1.1.357/src/cpp/session/CMakeLists.txt
-@@ -25,9 +25,6 @@ endif()
- if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26")
- message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)")
- endif()
--if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
-- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
--endif()
-
- # we often install embedded versions of these packages but don't do so currently
-
-@@ -38,22 +35,6 @@ endif()
- # message(FATAL_ERROR "rsconnect package not found (re-run install-dependencies script to install)")
- # endif()
-
--# verify libclang is installed
--if(WIN32)
-- set(LIBCLANG_VERSION "3.4")
--else()
-- set(LIBCLANG_VERSION "3.5")
--endif()
--set(LIBCLANG_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/${LIBCLANG_VERSION}")
--if(NOT EXISTS "${LIBCLANG_DIR}")
-- message(FATAL_ERROR "libclang ${LIBCLANG_VERSION} not found (re-run install-dependencies script to install)")
--endif()
--set(LIBCLANG_HEADERS_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers")
--if(NOT EXISTS "${LIBCLANG_HEADERS_DIR}")
-- message(FATAL_ERROR "libclang builtin-headers not found (re-run install-dependencies script to install)")
--endif()
--
--
- # include files
- file(GLOB_RECURSE SESSION_HEADER_FILES "*.h*")
-
-@@ -465,13 +446,6 @@ if (NOT RSTUDIO_SESSION_WIN64)
- install(DIRECTORY "resources/connections"
- DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
-
-- # install pandoc
-- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/1.19.2.1")
-- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
-- install(FILES ${PANDOC_FILES}
-- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
-- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc)
--
- # install rmarkdown package
- # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz")
- # install(FILES ${RMARKDOWN_PACKAGE}
-@@ -502,24 +476,6 @@ if (NOT RSTUDIO_SESSION_WIN64)
- install(DIRECTORY "resources/profiler"
- DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
-
-- # install libclang
-- if(WIN32)
-- file(GLOB LIBCLANG_32_FILES "${LIBCLANG_DIR}/x86/libclang.*")
-- install(PROGRAMS ${LIBCLANG_32_FILES}
-- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86)
-- file(GLOB LIBCLANG_64_FILES "${LIBCLANG_DIR}/x86_64/libclang.*")
-- install(PROGRAMS ${LIBCLANG_64_FILES}
-- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86_64)
-- else()
-- file(GLOB_RECURSE LIBCLANG_FILES "${LIBCLANG_DIR}/libclang.*")
-- install(PROGRAMS ${LIBCLANG_FILES}
-- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang)
-- endif()
--
-- # install libclang builtin-headers
-- install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers"
-- DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources/libclang")
--
- # install winpty on windows
- if(WIN32)
- install(PROGRAMS "${WINPTY_BINDIR_32}/winpty.dll"
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch b/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch
deleted file mode 100644
index 760c9b56105..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch
+++ /dev/null
@@ -1,38 +0,0 @@
---- rstudio-1.1.453-orig/src/cpp/core/DateTime.cpp 2018-05-15 04:19:30.000000000 +1000
-+++ rstudio-1.1.453/src/cpp/core/DateTime.cpp 2018-07-02 16:19:21.335703471 +1000
-@@ -65,7 +65,7 @@
- using namespace boost::posix_time;
-
- ptime time_t_epoch(date(1970,1,1));
-- return time_t_epoch + seconds(sec);
-+ return time_t_epoch + seconds(static_cast<long>(sec));
- }
-
- boost::posix_time::ptime timeFromMillisecondsSinceEpoch(int64_t ms)
---- rstudio-1.1.453-orig/src/cpp/core/file_lock/FileLock.cpp 2018-05-15 04:19:30.000000000 +1000
-+++ rstudio-1.1.453/src/cpp/core/file_lock/FileLock.cpp 2018-07-02 17:00:35.915695201 +1000
-@@ -133,11 +133,11 @@
-
- // timeout interval
- double timeoutInterval = getFieldPositive(settings, "timeout-interval", kDefaultTimeoutInterval);
-- FileLock::s_timeoutInterval = boost::posix_time::seconds(timeoutInterval);
-+ FileLock::s_timeoutInterval = boost::posix_time::seconds(static_cast<long>(timeoutInterval));
-
- // refresh rate
- double refreshRate = getFieldPositive(settings, "refresh-rate", kDefaultRefreshRate);
-- FileLock::s_refreshRate = boost::posix_time::seconds(refreshRate);
-+ FileLock::s_refreshRate = boost::posix_time::seconds(static_cast<long>(refreshRate));
-
- // logging
- bool loggingEnabled = settings.getBool("enable-logging", false);
-@@ -212,8 +212,8 @@
-
- // default values for static members
- FileLock::LockType FileLock::s_defaultType(FileLock::LOCKTYPE_LINKBASED);
--boost::posix_time::seconds FileLock::s_timeoutInterval(kDefaultTimeoutInterval);
--boost::posix_time::seconds FileLock::s_refreshRate(kDefaultRefreshRate);
-+boost::posix_time::seconds FileLock::s_timeoutInterval(static_cast<long>(kDefaultTimeoutInterval));
-+boost::posix_time::seconds FileLock::s_refreshRate(static_cast<long>(kDefaultRefreshRate));
- bool FileLock::s_loggingEnabled(false);
- bool FileLock::s_isLoadBalanced(false);
- FilePath FileLock::s_logFile;
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch b/sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch
deleted file mode 100644
index 641f7710167..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch
+++ /dev/null
@@ -1,143 +0,0 @@
---- rstudio-1.1.453-orig/src/cpp/session/SessionClientInit.cpp 2018-05-15 04:19:30.000000000 +1000
-+++ rstudio-1.1.453/src/cpp/session/SessionClientInit.cpp 2018-07-02 20:21:41.595654877 +1000
-@@ -105,7 +105,7 @@
- }
-
- // prepare session info
-- json::Object sessionInfo ;
-+ core::json::Object sessionInfo ;
- sessionInfo["clientId"] = clientId;
- sessionInfo["mode"] = options.programMode();
-
-@@ -119,8 +119,8 @@
- }
-
- // temp dir
-- FilePath tempDir = rstudio::r::session::utils::tempDir();
-- Error error = tempDir.ensureDirectory();
-+ core::FilePath tempDir = rstudio::r::session::utils::tempDir();
-+ core::Error error = tempDir.ensureDirectory();
- if (error)
- LOG_ERROR(error);
- sessionInfo["temp_dir"] = tempDir.absolutePath();
-@@ -132,12 +132,12 @@
- sessionInfo["prompt"] = rstudio::r::options::getOption<std::string>("prompt");
-
- // client state
-- json::Object clientStateObject;
-+ core::json::Object clientStateObject;
- rstudio::r::session::clientState().currentState(&clientStateObject);
- sessionInfo["client_state"] = clientStateObject;
-
- // source documents
-- json::Array jsonDocs;
-+ core::json::Array jsonDocs;
- error = modules::source::clientInitDocuments(&jsonDocs);
- if (error)
- LOG_ERROR(error);
-@@ -159,7 +159,7 @@
- if (resumed)
- {
- // console actions
-- json::Object actionsObject;
-+ core::json::Object actionsObject;
- consoleActions.asJson(&actionsObject);
- sessionInfo["console_actions"] = actionsObject;
- }
-@@ -211,12 +211,12 @@
- }
- else
- {
-- sessionInfo["active_project_file"] = json::Value();
-- sessionInfo["project_ui_prefs"] = json::Value();
-- sessionInfo["project_open_docs"] = json::Value();
-+ sessionInfo["active_project_file"] = core::json::Value();
-+ sessionInfo["project_ui_prefs"] = core::json::Value();
-+ sessionInfo["project_open_docs"] = core::json::Value();
- sessionInfo["project_supports_sharing"] = false;
- sessionInfo["project_owned_by_user"] = false;
-- sessionInfo["project_user_data_directory"] = json::Value();
-+ sessionInfo["project_user_data_directory"] = core::json::Value();
- }
-
- sessionInfo["system_encoding"] = std::string(::locale2charset(NULL));
-@@ -253,20 +253,20 @@
- sessionInfo["build_tools_bookdown_website"] =
- module_context::isBookdownWebsite();
-
-- FilePath buildTargetDir = projects::projectContext().buildTargetPath();
-+ core::FilePath buildTargetDir = projects::projectContext().buildTargetPath();
- if (!buildTargetDir.empty())
- {
- sessionInfo["build_target_dir"] = module_context::createAliasedPath(
- buildTargetDir);
-- sessionInfo["has_pkg_src"] = (type == r_util::kBuildTypePackage) &&
-+ sessionInfo["has_pkg_src"] = (type == core::r_util::kBuildTypePackage) &&
- buildTargetDir.childPath("src").exists();
- sessionInfo["has_pkg_vig"] =
-- (type == r_util::kBuildTypePackage) &&
-+ (type == core::r_util::kBuildTypePackage) &&
- buildTargetDir.childPath("vignettes").exists();
- }
- else
- {
-- sessionInfo["build_target_dir"] = json::Value();
-+ sessionInfo["build_target_dir"] = core::json::Value();
- sessionInfo["has_pkg_src"] = false;
- sessionInfo["has_pkg_vig"] = false;
- }
-@@ -274,9 +274,9 @@
- }
- else
- {
-- sessionInfo["build_tools_type"] = r_util::kBuildTypeNone;
-+ sessionInfo["build_tools_type"] = core::r_util::kBuildTypeNone;
- sessionInfo["build_tools_bookdown_website"] = false;
-- sessionInfo["build_target_dir"] = json::Value();
-+ sessionInfo["build_target_dir"] = core::json::Value();
- sessionInfo["has_pkg_src"] = false;
- sessionInfo["has_pkg_vig"] = false;
- }
-@@ -285,7 +285,7 @@
- sessionInfo["presentation_commands"] = options.allowPresentationCommands();
-
- sessionInfo["tutorial_api_available"] = false;
-- sessionInfo["tutorial_api_client_origin"] = json::Value();
-+ sessionInfo["tutorial_api_client_origin"] = core::json::Value();
-
- sessionInfo["build_state"] = modules::build::buildStateAsJson();
- sessionInfo["devtools_installed"] = module_context::isMinimumDevtoolsInstalled();
-@@ -296,7 +296,7 @@
-
- // console history -- we do this at the end because
- // restoreBuildRestartContext may have reset it
-- json::Array historyArray;
-+ core::json::Array historyArray;
- rstudio::r::session::consoleHistory().asJson(&historyArray);
- sessionInfo["console_history"] = historyArray;
- sessionInfo["console_history_capacity"] =
-@@ -364,13 +364,13 @@
-
- sessionInfo["multi_session"] = options.multiSession();
-
-- json::Object rVersionsJson;
-+ core::json::Object rVersionsJson;
- rVersionsJson["r_version"] = module_context::rVersion();
- rVersionsJson["r_home_dir"] = module_context::rHomeDir();
- sessionInfo["r_versions_info"] = rVersionsJson;
-
- sessionInfo["show_user_home_page"] = options.showUserHomePage();
-- sessionInfo["user_home_page_url"] = json::Value();
-+ sessionInfo["user_home_page_url"] = core::json::Value();
-
- sessionInfo["r_addins"] = modules::r_addins::addinRegistryAsJson();
- sessionInfo["package_provided_extensions"] = modules::ppe::indexer().getPayload();
-@@ -394,7 +394,7 @@
-
- // send response (we always set kEventsPending to false so that the client
- // won't poll for events until it is ready)
-- json::JsonRpcResponse jsonRpcResponse ;
-+ core::json::JsonRpcResponse jsonRpcResponse ;
- jsonRpcResponse.setField(kEventsPending, "false");
- jsonRpcResponse.setResult(sessionInfo) ;
- ptrConnection->sendJsonRpcResponse(jsonRpcResponse);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch
deleted file mode 100644
index a7a48572de3..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch
+++ /dev/null
@@ -1,460 +0,0 @@
---- /dev/null 2019-03-19 11:03:33.121000004 +1100
-+++ rstudio-1.1.463/src/cpp/core/include/core/BoostSignals.hpp 2018-11-17 21:24:35.285976284 +1100
-@@ -0,0 +1,40 @@
-+/*
-+ * BoostSignals.hpp
-+ *
-+ * Copyright (C) 2009-18 by RStudio, Inc.
-+ *
-+ * Unless you have received this program directly from RStudio pursuant
-+ * to the terms of a commercial license agreement with RStudio, then
-+ * this program is licensed to you under the terms of version 3 of the
-+ * GNU Affero General Public License. This program is distributed WITHOUT
-+ * ANY EXPRESS OR IMPLIED WARRANTY, INCLUDING THOSE OF NON-INFRINGEMENT,
-+ * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Please refer to the
-+ * AGPL (http://www.gnu.org/licenses/agpl-3.0.txt) for more details.
-+ *
-+ */
-+
-+#ifndef CORE_RSTUDIO_BOOST_SIGNALS_HPP
-+#define CORE_RSTUDIO_BOOST_SIGNALS_HPP
-+
-+#if RSTUDIO_BOOST_SIGNALS_VERSION == 1
-+
-+# include <boost/signals.hpp>
-+# define RSTUDIO_BOOST_SIGNAL boost::signal
-+# define RSTUDIO_BOOST_CONNECTION boost::signals::connection
-+# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals::scoped_connection
-+# define RSTUDIO_BOOST_LAST_VALUE boost::last_value
-+
-+#elif RSTUDIO_BOOST_SIGNALS_VERSION == 2
-+
-+# include <boost/signals2.hpp>
-+# define RSTUDIO_BOOST_SIGNAL boost::signals2::signal
-+# define RSTUDIO_BOOST_CONNECTION boost::signals2::connection
-+# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals2::scoped_connection
-+# define RSTUDIO_BOOST_LAST_VALUE boost::signals2::last_value
-+
-+#else
-+# error "Unrecognized RSTUDIO_BOOST_SIGNALS_VERSION"
-+#endif
-+
-+#endif // CORE_RSTUDIO_BOOST_SIGNALS_HPP
-+
---- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100
-@@ -208,6 +208,18 @@
- message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}")
- endif()
-
-+# allow opt-in to using Boost.Signals2
-+# TODO: remove this in RStudio v1.3 and port to signals2
-+if(NOT RSTUDIO_BOOST_SIGNALS_VERSION)
-+ if (BOOST_VERSION VERSION_LESS 1.69.0)
-+ set(RSTUDIO_BOOST_SIGNALS_VERSION 1)
-+ else()
-+ set(RSTUDIO_BOOST_SIGNALS_VERSION 2)
-+ endif()
-+endif()
-+
-+message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
-+add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION})
-
- # add boost as system include directory
- include_directories(SYSTEM ${Boost_INCLUDE_DIRS})
---- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-11-17 21:24:35.285976284 +1100
-@@ -20,8 +20,8 @@
-
- #include <boost/utility.hpp>
- #include <boost/circular_buffer.hpp>
--#include <boost/signal.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/json/Json.hpp>
-
- namespace rstudio {
-@@ -44,7 +44,7 @@
- public:
- typedef boost::circular_buffer<std::string>::value_type value_type;
- typedef boost::circular_buffer<std::string>::const_iterator const_iterator;
-- typedef boost::signal<void (const std::string&)> AddSignal;
-+ typedef RSTUDIO_BOOST_SIGNAL<void (const std::string&)> AddSignal;
-
- private:
- ConsoleHistory();
-@@ -86,8 +86,7 @@
- core::Error loadFromFile(const core::FilePath& filePath, bool verifyFile);
- core::Error saveToFile(const core::FilePath& filePath) const;
-
-- boost::signals::connection connectOnAdd(
-- const AddSignal::slot_function_type& slot)
-+ RSTUDIO_BOOST_CONNECTION connectOnAdd(const AddSignal::slot_function_type& slot)
- {
- return onAdd_.connect(slot);
- }
---- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RGraphics.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/include/r/session/RGraphics.hpp 2018-11-17 21:24:35.286976293 +1100
-@@ -19,6 +19,8 @@
- #include <boost/system/error_code.hpp>
- #include <boost/date_time/posix_time/ptime.hpp>
-
-+#include <core/BoostSignals.hpp>
-+
- namespace rstudio {
- namespace r {
- namespace session {
-@@ -56,8 +58,8 @@
- #include <vector>
-
- #include <boost/function.hpp>
--#include <boost/signal.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/Error.hpp>
- #include <core/json/Json.hpp>
-
-@@ -162,7 +164,7 @@
- virtual void clear() = 0;
-
- // subscribe to showManipulator event
-- virtual boost::signal<void ()>& onShowManipulator() = 0;
-+ virtual RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() = 0;
-
- // set manipulator values
- virtual void setPlotManipulatorValues(const core::json::Object& values) = 0;
---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-11-17 21:24:35.286976293 +1100
-@@ -540,7 +540,7 @@
-
-
-
--boost::signal<void ()>& PlotManager::onShowManipulator()
-+RSTUDIO_BOOST_SIGNAL<void ()>& PlotManager::onShowManipulator()
- {
- return plotManipulatorManager().onShowManipulator();
- }
---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-11-17 21:24:35.287976303 +1100
-@@ -22,10 +22,10 @@
- #include <boost/utility.hpp>
- #include <boost/shared_ptr.hpp>
- #include <boost/function.hpp>
--#include <boost/signal.hpp>
- #include <boost/regex.hpp>
- #include <boost/circular_buffer.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/Error.hpp>
- #include <core/FilePath.hpp>
-
-@@ -45,10 +45,10 @@
-
- struct GraphicsDeviceEvents
- {
-- boost::signal<void (SEXP)> onNewPage;
-- boost::signal<void ()> onDrawing;
-- boost::signal<void ()> onResized;
-- boost::signal<void ()> onClosed;
-+ RSTUDIO_BOOST_SIGNAL<void (SEXP)> onNewPage;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onDrawing;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onResized;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onClosed;
- };
-
- class PlotManipulatorManager;
-@@ -110,7 +110,7 @@
-
- virtual void clear();
-
-- virtual boost::signal<void ()>& onShowManipulator() ;
-+ virtual RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() ;
- virtual void setPlotManipulatorValues(const core::json::Object& values);
- virtual void manipulatorPlotClicked(int x, int y);
-
---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-11-17 21:24:35.287976303 +1100
-@@ -184,7 +184,7 @@
- }
-
-
--boost::signal<void ()>& PlotManipulatorManager::onShowManipulator()
-+RSTUDIO_BOOST_SIGNAL<void ()>& PlotManipulatorManager::onShowManipulator()
- {
- return onShowManipulator_;
- }
---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-11-17 21:24:35.287976303 +1100
-@@ -16,8 +16,7 @@
- #ifndef R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP
- #define R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP
-
--#include <boost/signal.hpp>
--
-+#include <core/BoostSignals.hpp>
- #include <core/Error.hpp>
- #include <core/json/Json.hpp>
-
-@@ -53,7 +52,7 @@
- public:
- core::Error initialize(const UnitConversionFunctions& convert);
-
-- boost::signal<void ()>& onShowManipulator() ;
-+ RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() ;
- void setPlotManipulatorValues(const core::json::Object& values);
- void manipulatorPlotClicked(int x, int y);
-
-@@ -85,7 +84,7 @@
- bool replayingManipulator_;
-
- // manipulator event hook
-- boost::signal<void ()> onShowManipulator_;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onShowManipulator_;
-
- // unit conversion function
- UnitConversionFunctions convert_;
---- rstudio-1.1.463-orig/src/cpp/server/include/server/ServerSessionManager.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/server/include/server/ServerSessionManager.hpp 2018-11-17 21:27:05.255436316 +1100
-@@ -20,9 +20,9 @@
- #include <vector>
- #include <map>
-
--#include <boost/signals.hpp>
- #include <boost/asio/io_service.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/Thread.hpp>
-
- #include <core/system/PosixSystem.hpp>
---- rstudio-1.1.463-orig/src/cpp/session/SessionMain.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/SessionMain.cpp 2018-11-17 21:24:35.288976313 +1100
-@@ -33,12 +33,12 @@
- #include <boost/lexical_cast.hpp>
- #include <boost/format.hpp>
-
--#include <boost/signals.hpp>
- #include <boost/date_time/posix_time/posix_time.hpp>
- #include <boost/algorithm/string/predicate.hpp>
- #include <boost/algorithm/string/join.hpp>
-
- #include <core/Error.hpp>
-+#include <core/BoostSignals.hpp>
- #include <core/BoostThread.hpp>
- #include <core/ConfigUtils.hpp>
- #include <core/FilePath.hpp>
---- rstudio-1.1.463-orig/src/cpp/session/SessionModuleContext.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/SessionModuleContext.cpp 2018-11-17 21:24:35.289976322 +1100
-@@ -19,10 +19,10 @@
-
- #include <boost/assert.hpp>
- #include <boost/utility.hpp>
--#include <boost/signal.hpp>
- #include <boost/format.hpp>
- #include <boost/numeric/conversion/cast.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/BoostThread.hpp>
- #include <core/Error.hpp>
- #include <core/FilePath.hpp>
-@@ -586,13 +586,13 @@
-
- int nextGroup_;
-
-- boost::signal<void(const r::session::RSuspendOptions&,Settings*),
-- boost::last_value<void>,
-+ RSTUDIO_BOOST_SIGNAL<void(const r::session::RSuspendOptions&,Settings*),
-+ RSTUDIO_BOOST_LAST_VALUE<void>,
- int,
- std::less<int> > suspendSignal_;
-
-- boost::signal<void(const Settings&),
-- boost::last_value<void>,
-+ RSTUDIO_BOOST_SIGNAL<void(const Settings&),
-+ RSTUDIO_BOOST_LAST_VALUE<void>,
- int,
- std::greater<int> > resumeSignal_;
- };
---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-11-17 21:24:35.290976332 +1100
-@@ -20,10 +20,10 @@
- #include <deque>
-
- #include <boost/regex.hpp>
--#include <boost/signals.hpp>
- #include <boost/circular_buffer.hpp>
- #include <boost/enable_shared_from_this.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/system/Process.hpp>
- #include <core/terminal/PrivateCommand.hpp>
-
-@@ -146,7 +146,7 @@
- void setPromptHandler(
- const boost::function<bool(const std::string&, Input*)>& onPrompt);
-
-- boost::signal<void(int)>& onExit() { return onExit_; }
-+ RSTUDIO_BOOST_SIGNAL<void(int)>& onExit() { return onExit_; }
-
- std::string handle() const { return procInfo_->getHandle(); }
- InteractionMode interactionMode() const { return procInfo_->getInteractionMode(); }
-@@ -264,7 +264,7 @@
- boost::mutex inputOutputQueueMutex_;
-
- boost::function<bool(const std::string&, Input*)> onPrompt_;
-- boost::signal<void(int)> onExit_;
-+ RSTUDIO_BOOST_SIGNAL<void(int)> onExit_;
-
- // regex for prompt detection
- boost::regex controlCharsPattern_;
---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionModuleContext.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/include/session/SessionModuleContext.hpp 2018-11-17 21:28:25.019212857 +1100
-@@ -21,9 +21,9 @@
-
- #include <boost/utility.hpp>
- #include <boost/function.hpp>
--#include <boost/signals.hpp>
- #include <boost/shared_ptr.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/HtmlUtils.hpp>
- #include <core/system/System.hpp>
- #include <core/system/ShellUtils.hpp>
-@@ -315,35 +315,35 @@
- // session events
- struct Events : boost::noncopyable
- {
-- boost::signal<void (core::json::Object*)> onSessionInfo;
-- boost::signal<void ()> onClientInit;
-- boost::signal<void ()> onBeforeExecute;
-- boost::signal<void(const std::string&)> onConsolePrompt;
-- boost::signal<void(const std::string&)> onConsoleInput;
-- boost::signal<void(const std::string&, const std::string&)>
-+ RSTUDIO_BOOST_SIGNAL<void (core::json::Object*)> onSessionInfo;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onClientInit;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onBeforeExecute;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onConsolePrompt;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onConsoleInput;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&)>
- onActiveConsoleChanged;
-- boost::signal<void (ConsoleOutputType, const std::string&)>
-+ RSTUDIO_BOOST_SIGNAL<void (ConsoleOutputType, const std::string&)>
- onConsoleOutput;
-- boost::signal<void()> onUserInterrupt;
-- boost::signal<void (ChangeSource)> onDetectChanges;
-- boost::signal<void (core::FilePath)> onSourceEditorFileSaved;
-- boost::signal<void(bool)> onDeferredInit;
-- boost::signal<void(bool)> afterSessionInitHook;
-- boost::signal<void(bool)> onBackgroundProcessing;
-- boost::signal<void(bool)> onShutdown;
-- boost::signal<void ()> onQuit;
-- boost::signal<void ()> onDestroyed;
-- boost::signal<void (const std::vector<std::string>&)>
-+ RSTUDIO_BOOST_SIGNAL<void()> onUserInterrupt;
-+ RSTUDIO_BOOST_SIGNAL<void (ChangeSource)> onDetectChanges;
-+ RSTUDIO_BOOST_SIGNAL<void (core::FilePath)> onSourceEditorFileSaved;
-+ RSTUDIO_BOOST_SIGNAL<void(bool)> onDeferredInit;
-+ RSTUDIO_BOOST_SIGNAL<void(bool)> afterSessionInitHook;
-+ RSTUDIO_BOOST_SIGNAL<void(bool)> onBackgroundProcessing;
-+ RSTUDIO_BOOST_SIGNAL<void(bool)> onShutdown;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onQuit;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onDestroyed;
-+ RSTUDIO_BOOST_SIGNAL<void (const std::vector<std::string>&)>
- onLibPathsChanged;
-- boost::signal<void (const std::string&)> onPackageLoaded;
-- boost::signal<void ()> onPackageLibraryMutated;
-- boost::signal<void ()> onPreferencesSaved;
-- boost::signal<void (const core::DistributedEvent&)>
-+ RSTUDIO_BOOST_SIGNAL<void (const std::string&)> onPackageLoaded;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onPackageLibraryMutated;
-+ RSTUDIO_BOOST_SIGNAL<void ()> onPreferencesSaved;
-+ RSTUDIO_BOOST_SIGNAL<void (const core::DistributedEvent&)>
- onDistributedEvent;
-- boost::signal<void (core::FilePath)> onPermissionsChanged;
-+ RSTUDIO_BOOST_SIGNAL<void (core::FilePath)> onPermissionsChanged;
-
- // signal for detecting extended type of documents
-- boost::signal<std::string(boost::shared_ptr<source_database::SourceDocument>),
-+ RSTUDIO_BOOST_SIGNAL<std::string(boost::shared_ptr<source_database::SourceDocument>),
- firstNonEmpty<std::string> > onDetectSourceExtendedType;
- };
-
---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-11-17 21:24:35.291976342 +1100
-@@ -21,8 +21,8 @@
-
- #include <boost/utility.hpp>
- #include <boost/shared_ptr.hpp>
--#include <boost/signals.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/FilePath.hpp>
- #include <core/json/Json.hpp>
-
-@@ -204,14 +204,14 @@
- // source database events
- struct Events : boost::noncopyable
- {
-- boost::signal<void(boost::shared_ptr<SourceDocument>)> onDocUpdated;
-- boost::signal<void(const std::string&,
-+ RSTUDIO_BOOST_SIGNAL<void(boost::shared_ptr<SourceDocument>)> onDocUpdated;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&,
- boost::shared_ptr<SourceDocument>)> onDocRenamed;
-- boost::signal<void(const std::string&)> onDocAdded;
-- boost::signal<void(
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onDocAdded;
-+ RSTUDIO_BOOST_SIGNAL<void(
- boost::shared_ptr<source_database::SourceDocument>)> onDocPendingRemove;
-- boost::signal<void(const std::string&, const std::string&)> onDocRemoved;
-- boost::signal<void()> onRemoveAll;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&)> onDocRemoved;
-+ RSTUDIO_BOOST_SIGNAL<void()> onRemoveAll;
- };
-
- Events& events();
---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionUserSettings.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/include/session/SessionUserSettings.hpp 2018-11-17 21:24:35.291976342 +1100
-@@ -20,8 +20,8 @@
-
- #include <boost/utility.hpp>
- #include <boost/scoped_ptr.hpp>
--#include <boost/signal.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/Settings.hpp>
- #include <core/FilePath.hpp>
- #include <core/StringUtils.hpp>
-@@ -62,7 +62,7 @@
- friend UserSettings& userSettings();
-
- public:
-- boost::signal<void()> onChanged;
-+ RSTUDIO_BOOST_SIGNAL<void()> onChanged;
-
- public:
- // COPYING: boost::noncopyable
---- rstudio-1.1.463-orig/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-11-17 21:24:35.291976342 +1100
-@@ -22,8 +22,8 @@
- #include <boost/utility.hpp>
- #include <boost/shared_ptr.hpp>
- #include <boost/foreach.hpp>
--#include <boost/signals.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/FileInfo.hpp>
- #include <core/FilePath.hpp>
- #include <core/Settings.hpp>
-@@ -220,10 +220,10 @@
-
- bool hasFileMonitor_;
- std::vector<std::string> monitorSubscribers_;
-- boost::signal<void(const tree<core::FileInfo>&)> onMonitoringEnabled_;
-- boost::signal<void(const std::vector<core::system::FileChangeEvent>&)>
-+ RSTUDIO_BOOST_SIGNAL<void(const tree<core::FileInfo>&)> onMonitoringEnabled_;
-+ RSTUDIO_BOOST_SIGNAL<void(const std::vector<core::system::FileChangeEvent>&)>
- onFilesChanged_;
-- boost::signal<void()> onMonitoringDisabled_;
-+ RSTUDIO_BOOST_SIGNAL<void()> onMonitoringDisabled_;
- };
-
- ProjectContext& projectContext();
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch
deleted file mode 100644
index d90ce005a1a..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch
+++ /dev/null
@@ -1,220 +0,0 @@
---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionPlots.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/SessionPlots.hpp 2018-11-17 21:24:35.292976352 +1100
-@@ -16,7 +16,7 @@
- #ifndef SESSION_PLOTS_HPP
- #define SESSION_PLOTS_HPP
-
--#include <boost/signals.hpp>
-+#include <core/BoostSignals.hpp>
-
- namespace rstudio {
- namespace core {
-@@ -35,9 +35,9 @@
-
- struct Events : boost::noncopyable
- {
-- boost::signal<void()> onBeforeNewPlot;
-- boost::signal<void()> onBeforeNewGridPage;
-- boost::signal<void()> onNewPlot;
-+ RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewPlot;
-+ RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewGridPage;
-+ RSTUDIO_BOOST_SIGNAL<void()> onNewPlot;
- };
-
- Events& events();
---- rstudio-1.1.463-orig/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-11-17 21:24:35.293976361 +1100
-@@ -15,11 +15,11 @@
-
- #include "SessionSourceCpp.hpp"
-
--#include <boost/signal.hpp>
- #include <boost/algorithm/string/trim.hpp>
- #include <boost/algorithm/string/predicate.hpp>
- #include <boost/algorithm/string/join.hpp>
-
-+#include <core/BoostSignals.hpp>
- #include <core/Error.hpp>
- #include <core/FilePath.hpp>
- #include <core/StringUtils.hpp>
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-11-17 21:24:35.294976371 +1100
-@@ -142,7 +142,7 @@
- LOG_ERROR(error);
-
- // capture console output, error
-- boost::signals::scoped_connection consoleHandler =
-+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
- module_context::events().onConsoleOutput.connect(
- boost::bind(chunkConsoleOutputHandler,
- _1,
-@@ -219,7 +219,7 @@
- LOG_ERROR(error);
-
- // capture console output, error
-- boost::signals::scoped_connection consoleHandler =
-+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
- module_context::events().onConsoleOutput.connect(
- boost::bind(chunkConsoleOutputHandler,
- _1,
-@@ -363,7 +363,7 @@
- LOG_ERROR(error);
-
- // capture console output, error
-- boost::signals::scoped_connection consoleHandler =
-+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler =
- module_context::events().onConsoleOutput.connect(
- boost::bind(chunkConsoleOutputHandler,
- _1,
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-11-17 21:24:35.294976371 +1100
-@@ -16,6 +16,8 @@
- #include "SessionRmdNotebook.hpp"
- #include "NotebookCapture.hpp"
-
-+#include <boost/make_shared.hpp>
-+
- namespace rstudio {
- namespace session {
- namespace modules {
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-11-17 21:24:35.295976381 +1100
-@@ -441,7 +441,7 @@
- }
-
- // unhook all our event handlers
-- BOOST_FOREACH(const boost::signals::connection connection, connections_)
-+ BOOST_FOREACH(const RSTUDIO_BOOST_CONNECTION connection, connections_)
- {
- connection.disconnect();
- }
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-11-17 21:24:35.295976381 +1100
-@@ -18,8 +18,7 @@
-
- #include <session/SessionModuleContext.hpp>
-
--#include <boost/signal.hpp>
--
-+#include <core/BoostSignals.hpp>
- #include <core/json/Json.hpp>
-
- #include <r/RSexp.hpp>
-@@ -99,7 +98,7 @@
- bool hasErrors_;
-
- std::vector<boost::shared_ptr<NotebookCapture> > captures_;
-- std::vector<boost::signals::connection> connections_;
-+ std::vector<RSTUDIO_BOOST_CONNECTION> connections_;
- };
-
- } // namespace notebook
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-11-17 21:24:35.295976381 +1100
-@@ -20,11 +20,12 @@
-
- #include <boost/format.hpp>
- #include <boost/foreach.hpp>
--#include <boost/signals/connection.hpp>
-
--#include <core/system/FileMonitor.hpp>
--#include <core/StringUtils.hpp>
-+#include <core/BoostSignals.hpp>
- #include <core/Exec.hpp>
-+#include <core/StringUtils.hpp>
-+
-+#include <core/system/FileMonitor.hpp>
-
- #include <session/SessionModuleContext.hpp>
-
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-11-17 21:24:35.296976391 +1100
-@@ -18,8 +18,10 @@
- #define SESSION_NOTEBOOK_PLOTS_HPP
-
- #include <boost/function.hpp>
--#include <boost/signals/connection.hpp>
-+
-+#include <core/BoostSignals.hpp>
- #include <core/FilePath.hpp>
-+
- #include <r/RSexp.hpp>
-
- #include "NotebookCapture.hpp"
-@@ -80,9 +82,9 @@
-
- unsigned lastOrdinal_;
-
-- boost::signals::connection onBeforeNewPlot_;
-- boost::signals::connection onBeforeNewGridPage_;
-- boost::signals::connection onNewPlot_;
-+ RSTUDIO_BOOST_CONNECTION onBeforeNewPlot_;
-+ RSTUDIO_BOOST_CONNECTION onBeforeNewGridPage_;
-+ RSTUDIO_BOOST_CONNECTION onNewPlot_;
-
- double width_;
- double height_;
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-11-17 21:24:35.296976391 +1100
-@@ -87,7 +87,7 @@
- pInput_->enque(kThreadQuitCommand);
-
- // unregister handlers
-- BOOST_FOREACH(boost::signals::connection connection, handlers_)
-+ BOOST_FOREACH(RSTUDIO_BOOST_CONNECTION connection, handlers_)
- {
- connection.disconnect();
- }
-@@ -651,7 +651,7 @@
- boost::shared_ptr<ChunkExecContext> execContext_;
-
- // registered signal handlers
-- std::vector<boost::signals::connection> handlers_;
-+ std::vector<RSTUDIO_BOOST_CONNECTION> handlers_;
-
- // the thread which submits console input, and the queue which feeds it
- boost::thread console_;
---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-11-17 21:24:35.296976391 +1100
-@@ -18,7 +18,8 @@
- #define SESSION_RMARKDOWN_NOTEBOOK_HPP
-
- #include <ctime>
--#include <boost/signals.hpp>
-+
-+#include <core/BoostSignals.hpp>
- #include <core/json/Json.hpp>
-
- #define kChunkLibDir "lib"
-@@ -76,24 +77,24 @@
- struct Events : boost::noncopyable
- {
- // Document {0}, chunk {1} from context id {3} execution completed
-- boost::signal<void(const std::string&, const std::string&,
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&,
- const std::string&)>
- onChunkExecCompleted;
-
- // Document {0}, chunk {1} had console output of type {2} and text {3}
-- boost::signal<void(const std::string&, const std::string&, int,
-+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&, int,
- const std::string&)>
- onChunkConsoleOutput;
-
-- boost::signal<void(const core::FilePath&, const core::FilePath&,
-+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
- const core::json::Value& metadata, unsigned ordinal)>
- onPlotOutput;
-- boost::signal<void(const core::FilePath&, const core::FilePath&,
-+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
- const core::json::Value& metadata)> onHtmlOutput;
-- boost::signal<void(const core::json::Object&)> onErrorOutput;
-- boost::signal<void(const core::FilePath&, const core::FilePath&,
-+ RSTUDIO_BOOST_SIGNAL<void(const core::json::Object&)> onErrorOutput;
-+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&,
- const core::json::Value& metadata)> onDataOutput;
-- boost::signal<void(Condition condition, const std::string& message)>
-+ RSTUDIO_BOOST_SIGNAL<void(Condition condition, const std::string& message)>
- onCondition;
- };
-
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch
deleted file mode 100644
index 961723fd224..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch
+++ /dev/null
@@ -1,167 +0,0 @@
---- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100
-+++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:41:02.712507842 +1100
-@@ -175,6 +175,9 @@
- set(Boost_USE_STATIC_LIBS ON)
- set(BOOST_INCLUDEDIR ${RSTUDIO_TOOLS_BOOST}/include)
- find_package(Boost ${BOOST_VERSION} REQUIRED)
-+ if(NOT Boost_VERSION VERSION_LESS 1.69.0)
-+ list(REMOVE_ITEM BOOST_LIBS signals)
-+ endif()
-
- # define library list manually (find_package doesn't always pick them up)
- set(BOOST_LIB_DIR ${RSTUDIO_TOOLS_BOOST}/lib)
-@@ -184,11 +187,15 @@
- message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}")
- else()
- add_definitions(-DRSTUDIO_BOOST_NAMESPACE=boost)
-+ find_package(Boost ${BOOST_VERSION} REQUIRED)
-+ if(NOT Boost_VERSION VERSION_LESS 1.69.0)
-+ list(REMOVE_ITEM BOOST_LIBS signals)
-+ endif()
- find_package(Boost ${BOOST_VERSION} REQUIRED COMPONENTS ${BOOST_LIBS})
- message(STATUS "Using system Boost ${BOOST_VERSION}")
- endif()
-
-- # WIN32 BOOST
-+# WIN32 BOOST
- else()
- # hard-code to our own prebuilt boost libs
- add_definitions(-DRSTUDIO_BOOST_NAMESPACE=rstudio_boost)
-@@ -211,14 +218,14 @@
- # allow opt-in to using Boost.Signals2
- # TODO: remove this in RStudio v1.3 and port to signals2
- if(NOT RSTUDIO_BOOST_SIGNALS_VERSION)
-- if (BOOST_VERSION VERSION_LESS 1.69.0)
-+ if (Boost_VERSION VERSION_LESS 1.69.0)
- set(RSTUDIO_BOOST_SIGNALS_VERSION 1)
- else()
- set(RSTUDIO_BOOST_SIGNALS_VERSION 2)
- endif()
- endif()
-
--message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
-+message(STATUS "Using Boost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}")
- add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION})
-
- # add boost as system include directory
---- rstudio-1.1.463-orig/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-11-17 21:41:02.713507852 +1100
-@@ -75,9 +75,9 @@
- const std::string& name() const { return name_; }
- const boost::optional<std::string>& defaultValue() const { return defaultValue_; }
- boost::tribool hasDefault() const { return hasDefault_; }
-- bool isUsed() const { return isUsed_; }
-+ bool isUsed() const { return bool(isUsed_); }
- void setIsUsed(bool value) { isUsed_ = value; }
-- bool isMissingnessHandled() const { return isMissingnessHandled_; }
-+ bool isMissingnessHandled() const { return bool(isMissingnessHandled_); }
- void setMissingnessHandled(bool value) { isMissingnessHandled_ = value; }
-
- private:
-@@ -130,7 +130,7 @@
-
- bool isPrimitive()
- {
-- return isPrimitive_ == true;
-+ return bool(isPrimitive_);
- }
-
- void setIsPrimitive(bool isPrimitive)
---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionRParser.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/session/modules/SessionRParser.cpp 2018-11-17 21:41:02.714507862 +1100
-@@ -390,7 +390,7 @@
- if (!failed)
- {
- DEBUG("--- Found function in pkgInfo index: " << *fnInfo.binding());
-- return fnInfo.performsNse();
-+ return bool(fnInfo.performsNse());
- }
-
- // Handle some special cases first.
---- rstudio-1.1.463-orig/src/tools/clang-ubsan-build 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/clang-ubsan-build 2018-11-17 21:41:02.714507862 +1100
-@@ -10,19 +10,19 @@
-
- : ${RSTUDIO_USE_LIBCXX="Yes"}
- : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
--: ${RSTUDIO_BOOST_VERSION="1.56.0"}
-+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.56.0"}
-
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp \
-- -DLIBR_HOME="${R_HOME}" \
-- -DCMAKE_C_COMPILER="${CC}" \
-- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-- -DCMAKE_CXX_COMPILER="${CXX}" \
-- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \
-- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
-- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \
-+cmake ../cpp \
-+ -DLIBR_HOME="${R_HOME}" \
-+ -DCMAKE_C_COMPILER="${CC}" \
-+ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-+ -DCMAKE_CXX_COMPILER="${CXX}" \
-+ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-+ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \
-+ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
-+ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
- "$@"
- cd ..
-
---- rstudio-1.1.463-orig/src/tools/gcc-ubsan-build 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/gcc-ubsan-build 2018-11-17 21:41:02.715507871 +1100
-@@ -19,19 +19,19 @@
- # NOTE: Boost 1.50.0 not compatible with gcc-6
- : ${RSTUDIO_USE_LIBCXX="No"}
- : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"}
--: ${RSTUDIO_BOOST_VERSION="1.54.0"}
-+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.54.0"}
-
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp \
-- -DLIBR_HOME="${R_HOME}" \
-- -DCMAKE_C_COMPILER="${CC}" \
-- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-- -DCMAKE_CXX_COMPILER="${CXX}" \
-- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \
-- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
-- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \
-+cmake ../cpp \
-+ -DLIBR_HOME="${R_HOME}" \
-+ -DCMAKE_C_COMPILER="${CC}" \
-+ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-+ -DCMAKE_CXX_COMPILER="${CXX}" \
-+ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \
-+ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \
-+ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \
-+ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \
- "$@"
- cd ..
-
---- rstudio-1.1.463-orig/src/tools/xcode-ubsan-build 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/tools/xcode-ubsan-build 2018-11-17 21:41:02.715507871 +1100
-@@ -15,13 +15,13 @@
- # sanitizers released with newer versions of clang)
- mkdir -p "${BUILD_DIR}"
- cd "${BUILD_DIR}"
--cmake ../cpp -GXcode \
-- -DLIBR_HOME="${R_HOME}" \
-- -DLIBR_INCLUDE_DIRS="${R_INCL}" \
-- -DLIBR_DOC_DIR="${R_DOCS}" \
-- -DRSTUDIO_USE_LIBCXX="Yes" \
-- -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \
-- -DRSTUDIO_BOOST_VERSION="1.56.0" \
-+cmake ../cpp -GXcode \
-+ -DLIBR_HOME="${R_HOME}" \
-+ -DLIBR_INCLUDE_DIRS="${R_INCL}" \
-+ -DLIBR_DOC_DIR="${R_DOCS}" \
-+ -DRSTUDIO_USE_LIBCXX="Yes" \
-+ -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \
-+ -DRSTUDIO_BOOST_REQUESTED_VERSION="1.56.0" \
- "$@"
- cmake ../cpp -DLIBR_LIBRARIES="${R_LIBS}/libR.dylib"
- cd ..
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch
deleted file mode 100644
index 320b823355a..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch
+++ /dev/null
@@ -1,46 +0,0 @@
---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/connection.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/connection.hpp 2019-03-30 20:14:40.634057634 +1100
-@@ -296,7 +296,11 @@
- */
- timer_ptr set_timer(long duration, timer_handler callback) {
- timer_ptr new_timer = lib::make_shared<boost::asio::deadline_timer>(
-+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
-+ *m_io_service,
-+#else
- lib::ref(*m_io_service),
-+#endif
- boost::posix_time::milliseconds(duration)
- );
-
---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp 2019-03-30 20:14:36.319021594 +1100
-@@ -184,7 +184,12 @@
- m_io_service = ptr;
- m_external_io_service = true;
- m_acceptor = lib::make_shared<boost::asio::ip::tcp::acceptor>(
-- lib::ref(*m_io_service));
-+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
-+ *m_io_service
-+#else
-+ lib::ref(*m_io_service)
-+#endif
-+ );
-
- m_state = READY;
- ec = lib::error_code();
---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/security/none.hpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/security/none.hpp 2019-03-30 20:15:22.353406097 +1100
-@@ -167,7 +167,12 @@
- }
-
- m_socket = lib::make_shared<boost::asio::ip::tcp::socket>(
-- lib::ref(*service));
-+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000
-+ *service
-+#else
-+ lib::ref(*service)
-+#endif
-+ );
-
- m_state = READY;
-
diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch
deleted file mode 100644
index 914cd942e8f..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- rstudio-1.1.463-orig/src/cpp/server/ServerSecureKeyFile.cpp 2018-10-25 09:42:55.000000000 +1100
-+++ rstudio-1.1.463/src/cpp/server/ServerSecureKeyFile.cpp 2018-11-17 22:17:18.110012955 +1100
-@@ -79,8 +79,8 @@
- return error;
-
- // change mode it so it is only readable and writeable by this user
-- if (changeFileMode(secureKeyPath,
-- core::system::UserReadWriteMode) < 0)
-+ if (!!changeFileMode(secureKeyPath,
-+ core::system::UserReadWriteMode))
- {
- return systemError(errno, ERROR_LOCATION);
- }
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
deleted file mode 100644
index b2c4d2392f6..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-From a11d0454e5fe9c50005a03b9d9de84355df5c7fd Mon Sep 17 00:00:00 2001
-From: Kevin Ushey <kevinushey@gmail.com>
-Date: Fri, 15 Nov 2019 14:54:02 -0800
-Subject: [PATCH] avoid use of deprecated APIs
-
----
- src/cpp/core/FilePath.cpp | 4 +---
- 1 file changed, 1 insertion(+), 3 deletions(-)
-
-diff --git a/src/cpp/shared_core/FilePath.cpp b/src/cpp/shared_core/FilePath.cpp
-index 088366a9d6..495289e7fc 100644
---- a/src/cpp/core/FilePath.cpp
-+++ b/src/cpp/core/FilePath.cpp
-@@ -22,8 +22,6 @@
- #include <windows.h>
- #endif
-
--#define BOOST_FILESYSTEM_NO_DEPRECATED
--
- #define BOOST_NO_CXX11_SCOPED_ENUMS
- #include <boost/filesystem.hpp>
- #undef BOOST_NO_CXX11_SCOPED_ENUMS
-@@ -1032,7 +1030,7 @@
- {
- // NOTE: The path gets round-tripped through toString/fromString, would
- // be nice to have a direct constructor
-- if (!iterationFunction(itr.level(),
-+ if (!iterationFunction(itr.depth(),
- FilePath(BOOST_FS_PATH2STR(itr->path()))))
- {
- // end the iteration if requested
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch
deleted file mode 100644
index e38f5e0c444..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- rstudio-1.2.1335-orig/src/cpp/server_core/SecureKeyFile.cpp 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/cpp/server_core/SecureKeyFile.cpp 2019-04-09 20:47:57.943317208 +1000
-@@ -68,8 +68,8 @@
- return error;
-
- // change mode it so it is only readable and writeable by this user
-- if (changeFileMode(secureKeyPath,
-- core::system::UserReadWriteMode) < 0)
-+ if (!!changeFileMode(secureKeyPath,
-+ core::system::UserReadWriteMode))
- {
- return systemError(errno, ERROR_LOCATION);
- }
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch
deleted file mode 100644
index e2fe83867bc..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch
+++ /dev/null
@@ -1,32 +0,0 @@
---- rstudio-1.2.1335-orig/src/cpp/session/CMakeLists.txt 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/cpp/session/CMakeLists.txt 2019-04-09 17:22:59.210201624 +1000
-@@ -25,9 +25,6 @@
- if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26")
- message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)")
- endif()
--if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
-- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
--endif()
-
- # we often install embedded versions of these packages but don't do so currently
-
-@@ -479,19 +476,6 @@
- install(DIRECTORY "resources/connections"
- DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
-
--# install pandoc
--if(WIN32)
-- set(PANDOC_VERSION "2.6" CACHE INTERNAL "Pandoc version")
--else()
-- set(PANDOC_VERSION "2.3.1" CACHE INTERNAL "Pandoc version")
--endif()
--
--set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}")
--file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
--install(FILES ${PANDOC_FILES}
-- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
-- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc)
--
- # install rmarkdown package
- # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz")
- # install(FILES ${RMARKDOWN_PACKAGE}
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch
deleted file mode 100644
index ba66ef9f0ea..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch
+++ /dev/null
@@ -1,118 +0,0 @@
---- rstudio-1.2.1335-orig/CMakeGlobals.txt 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/CMakeGlobals.txt 2019-04-09 17:10:07.680657631 +1000
-@@ -161,7 +161,7 @@
- set(RSTUDIO_INSTALL_SUPPORTING RStudio.app/Contents/Resources)
- else()
- set(RSTUDIO_INSTALL_BIN bin)
-- set(RSTUDIO_INSTALL_SUPPORTING .)
-+ set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
- endif()
-
- # if the install prefix is /usr/local then tweak as appropriate
---- rstudio-1.2.1335-orig/src/cpp/server/CMakeLists.txt 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/cpp/server/CMakeLists.txt 2019-04-09 16:54:34.740739744 +1000
-@@ -194,7 +194,7 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
-- DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
-
- # install configured redhat init.d script
- set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
-@@ -202,7 +202,7 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
-- DESTINATION ${RSERVER_INITD_REDHAT_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
-
- # install configured suse init.d script
- set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
-@@ -210,13 +210,13 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
- install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
-- DESTINATION ${RSERVER_INITD_SUSE_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
-
- # install pam profile
- set(RSERVER_PAM_DIR "extras/pam")
- set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
- install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
-- DESTINATION ${RSERVER_PAM_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
-
- # install configured upstart profile
- set(RSERVER_UPSTART_DIR "extras/upstart")
-@@ -224,12 +224,12 @@
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
-- DESTINATION ${RSERVER_UPSTART_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
- set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
- configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
- ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
-- DESTINATION ${RSERVER_UPSTART_DIR})
-+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
-
- # install configured systemd profile
- set(RSERVER_SYSTEMD_DIR "extras/systemd")
---- rstudio-1.2.1335-orig/src/cpp/server/ServerOptions.cpp 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/cpp/server/ServerOptions.cpp 2019-04-09 16:54:34.740739744 +1000
-@@ -389,8 +389,8 @@
-
- // convert relative paths by completing from the system installation
- // path (this allows us to be relocatable)
-- resolvePath(resourcePath, &wwwLocalPath_);
-- resolvePath(resourcePath, &wwwSymbolMapsPath_);
-+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
-+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
- resolvePath(binaryPath, &authPamHelperPath_);
- resolvePath(binaryPath, &rsessionPath_);
- resolvePath(binaryPath, &rldpathPath_);
---- rstudio-1.2.1335-orig/src/cpp/session/SessionOptions.cpp 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/cpp/session/SessionOptions.cpp 2019-04-09 17:17:06.035206050 +1000
-@@ -53,7 +53,7 @@
- namespace session {
-
- namespace {
--const char* const kDefaultPandocPath = "bin/pandoc";
-+const char* const kDefaultPandocPath = "bin";
- const char* const kDefaultPostbackPath = "bin/postback/rpostback";
- const char* const kDefaultRsclangPath = "bin/rsclang";
-
-@@ -569,14 +569,14 @@
- }
-
- // convert relative paths by completing from the app resource path
-- resolvePath(resourcePath_, &rResourcesPath_);
-- resolvePath(resourcePath_, &agreementFilePath_);
-- resolvePath(resourcePath_, &wwwLocalPath_);
-- resolvePath(resourcePath_, &wwwSymbolMapsPath_);
-- resolvePath(resourcePath_, &coreRSourcePath_);
-- resolvePath(resourcePath_, &modulesRSourcePath_);
-- resolvePath(resourcePath_, &sessionLibraryPath_);
-- resolvePath(resourcePath_, &sessionPackageArchivesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
- resolvePostbackPath(resourcePath_, &rpostbackPath_);
- #ifdef _WIN32
- resolvePath(resourcePath_, &consoleIoPath_);
-@@ -601,7 +601,7 @@
- }
- winptyPath_ = pty.complete(completion).absolutePath();
- #endif // _WIN32
-- resolvePath(resourcePath_, &hunspellDictionariesPath_);
-+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
- resolvePath(resourcePath_, &mathjaxPath_);
- resolvePath(resourcePath_, &libclangHeadersPath_);
- resolvePandocPath(resourcePath_, &pandocPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch
deleted file mode 100644
index e72df553eeb..00000000000
--- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch
+++ /dev/null
@@ -1,53 +0,0 @@
---- rstudio-1.2.1335-orig/src/gwt/build.xml 2019-03-28 16:08:20.000000000 +1100
-+++ rstudio-1.2.1335/src/gwt/build.xml 2019-04-09 16:44:15.089471934 +1000
-@@ -34,6 +34,7 @@
- <property name="gwt.extra.args" value=""/>
- <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
- <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
-+ <property environment="env"/>
-
- <path id="project.class.path">
- <pathelement location="${build.dir}"/>
-@@ -112,8 +113,10 @@
- <pathelement location="${src.dir}"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
- <jvmarg value="-Xmx1536M"/>
-+ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
- <arg value="-war"/>
- <arg value="${www.dir}"/>
- <arg value="-localWorkers"/>
-@@ -154,6 +157,7 @@
- <pathelement location="${src.dir}"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <jvmarg value="-Xmx2048M"/>
- <arg value="-style"/>
- <arg value="PRETTY"/>
-@@ -176,6 +180,7 @@
- <pathelement location="src"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <jvmarg value="-Xmx2048M"/>
- <arg value="-style"/>
- <arg value="PRETTY"/>
-@@ -202,6 +207,7 @@
- <pathelement location="src"/>
- <path refid="project.class.path"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <jvmarg value="-Xmx2048M"/>
- <arg value="-src"/>
- <arg value = "src"/>
-@@ -237,6 +243,7 @@
- <pathelement location="${test.dir}"/>
- <pathelement location="${src.dir}"/>
- </classpath>
-+ <jvmarg value="-Duser.home=${env.T}"/>
- <classpath refid="project.class.path"/>
- <classpath refid="unittest.class.path"/>
- <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/>
diff --git a/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild b/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild
deleted file mode 100644
index 8b60b2efe5b..00000000000
--- a/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild
+++ /dev/null
@@ -1,255 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean
-
-# TODO
-# * package gin and gwt
-# * use dict from tree, linguas
-# * do src_test (use junit from tree?)
-
-# update from scripts in dependencies/common
-# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt
-GWT_VER=2.7.0
-GIN_VER=1.5
-SELENIUM_VER=2.37.0
-CHROMEDRIVER_VER=2.7
-# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
-PANDOC_VER=1.19.2.1
-# ls dependencies/common/*.tar.gz
-PACKRAT_VER=0.98.1000
-RMARKDOWN_VER=0.98.1000
-SHINYAPPS_VER=0.98.1000
-RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
-
-DESCRIPTION="IDE for the R language"
-HOMEPAGE="
- http://www.rstudio.org
- https://github.com/rstudio/rstudio/"
-SRC_URI="
- https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
- https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
- https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
- https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
- https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
-"
-
-LICENSE="AGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="dedicated libressl server"
-
-QT_VER=5.4
-QT_SLOT=5
-RDEPEND="
- >=app-text/pandoc-${PANDOC_VER}
- dev-haskell/pandoc-citeproc
- >=dev-lang/R-2.11.1
- >=dev-libs/boost-1.63:=
- >=dev-libs/mathjax-2.7.4
- sys-apps/util-linux
- >=sys-devel/clang-3.5.0:*
- sys-libs/zlib
- >=virtual/jre-1.8:=
- x11-libs/pango
- !dedicated? (
- >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
- >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
- server? ( sys-libs/pam )
- )
- dedicated? ( sys-libs/pam )
- !libressl? ( dev-libs/openssl:0= )
- libressl? ( dev-libs/libressl:0= )"
-DEPEND="${RDEPEND}
- app-arch/unzip
- dev-java/ant-core
- >=virtual/jdk-1.8:=
- virtual/pkgconfig"
-# test? ( dev-java/junit:4 )
-
-PATCHES=(
- "${FILESDIR}/${PN}-0.99.879-prefs.patch"
- "${FILESDIR}/${PN}-1.0.44-paths.patch"
- "${FILESDIR}/${PN}-1.1.357-clang-pandoc.patch"
- "${FILESDIR}/${PN}-0.98.490-linker_flags.patch"
- "${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch"
- "${FILESDIR}/${PN}-1.0.44-systemd.patch"
- "${FILESDIR}/${PN}-1.1.453-boost-1.67.0.patch"
- "${FILESDIR}/${PN}-1.1.453-core.patch"
- "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p1.patch"
- "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p2.patch"
- "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p3.patch"
- "${FILESDIR}/${PN}-1.1.463-fix-ptr-int-compare.patch"
- "${FILESDIR}/${PN}-1.1.463-boost-1.70.0.patch"
-)
-
-src_unpack() {
- unpack ${P}.tar.gz gwt-${GWT_VER}.zip
- cd "${S}" || die
- mkdir -p src/gwt/lib/{gin,gwt} \
- dependencies/common/dictionaries \
- src/gwt/lib/selenium/${SELENIUM_VER} \
- src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
- mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
- unzip -qd src/gwt/lib/gin/${GIN_VER} \
- "${DISTDIR}"/gin-${GIN_VER}.zip || die
- unzip -qd dependencies/common/dictionaries \
- "${DISTDIR}"/core-dictionaries.zip || die
- unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
- "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
- cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
- src/gwt/lib/selenium/${SELENIUM_VER}/ || die
- cp "${DISTDIR}"/chromedriver-linux \
- src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
- cd dependencies/common || die
- unpack packrat-${PACKRAT_VER}.tar.gz
- unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
- unpack shinyapps-${SHINYAPPS_VER}.tar.gz
- unpack rsconnect_${RSCONNECT_VER}.tar.gz
- cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
- . || die
-}
-
-src_prepare() {
- cmake-utils_src_prepare
- java-pkg-2_src_prepare
- egit_clean
-
- # Enable CMake to install our .service file for systemd usage
- mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
- cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
-
- # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
- # this sed hack for now. ~RMH
- sed -i \
- -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
- src/cpp/server/ServerOptions.cpp \
- src/cpp/session/SessionOptions.cpp || die
-
- # use mathjax from system
- ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
-
- # make sure icons and mime stuff are with prefix
- sed -i \
- -e "s:/usr:${EPREFIX}/usr:g" \
- CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
-
- # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
- sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \
- -i src/cpp/server/ServerOptions.cpp \
- || die
-
- # Set the rsession.conf file location for Gentoo prefix
- sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \
- -i src/cpp/session/SessionOptions.cpp \
- || die
-
- # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
- # It provides a library that has its version number appended to the end,
- # which is difficult to handle in cmake, as find_library does not support
- # searching for wildcard library names. So I find the library name from the
- # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
- rm -rf "${S}"/src/cpp/desktop/3rdparty || die
- local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
- $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
- | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
- -e 's@LIBS \*= -l@@')
- sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
- -i "${S}"/src/cpp/desktop/CMakeLists.txt \
- || die
-
- # The git commit for tag: git rev-list -n 1 v${PV}
- sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
- -i "${S}"/CMakeLists.txt \
- "${S}"/CMakeGlobals.txt \
- || die
-}
-
-src_configure() {
- export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
- export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
- export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
-
- local mycmakeargs=(
- -DDISTRO_SHARE=share/${PN}
- -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
- -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
- -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
- -DRSTUDIO_VERIFY_R_VERSION=FALSE
- )
-
- cmake-utils_src_configure
-}
-
-src_compile() {
- # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
- # P: /root/.oracle_jre_usage.
- export ANT_OPTS="-Duser.home=${T}"
- cmake-utils_src_compile
-}
-
-src_install() {
- export ANT_OPTS="-Duser.home=${T}"
- cmake-utils_src_install
- pax-mark m "${ED}/usr/bin/rstudio"
- doconfd "${FILESDIR}"/rstudio-server.conf
- dodir /etc/rstudio
- insinto /etc/rstudio
- doins "${FILESDIR}"/rsession.conf
- dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
- if use dedicated || use server; then
- dopamd src/cpp/server/extras/pam/rstudio
- newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
- fi
-}
-
-pkg_preinst() {
- use dedicated || gnome2_icon_savelist
- java-pkg-2_pkg_preinst
-}
-
-pkg_postinst() {
- use dedicated || { xdg_desktop_database_update
- xdg_mimeinfo_database_update
- gnome2_icon_cache_update ;}
-
- if use dedicated || use server; then
- enewgroup rstudio-server
- enewuser rstudio-server -1 -1 -1 rstudio-server
- fi
-}
-
-pkg_postrm() {
- use dedicated || { xdg_desktop_database_update
- xdg_mimeinfo_database_update
- gnome2_icon_cache_update ;}
-}
diff --git a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
deleted file mode 100644
index 2ba27bd5148..00000000000
--- a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
+++ /dev/null
@@ -1,254 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean
-
-# TODO
-# * package gin and gwt
-# * use dict from tree, linguas
-# * do src_test (use junit from tree?)
-
-# update from scripts in dependencies/common
-# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt
-GWT_VER=2.8.1
-GIN_VER=2.1.2
-SELENIUM_VER=2.37.0
-CHROMEDRIVER_VER=2.7
-# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
-# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage
-PANDOC_VER=1.19.2.1
-# ls dependencies/common/*.tar.gz
-PACKRAT_VER=0.98.1000
-RMARKDOWN_VER=0.98.1000
-SHINYAPPS_VER=0.98.1000
-RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0
-
-DESCRIPTION="IDE for the R language"
-HOMEPAGE="
- http://www.rstudio.org
- https://github.com/rstudio/rstudio/"
-SRC_URI="
- https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
- https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip
- https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar
- https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux
- https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
- https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz
- https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz
-"
-
-LICENSE="AGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="dedicated libressl server"
-
-QT_VER=5.4
-QT_SLOT=5
-RDEPEND="
- >=app-text/pandoc-${PANDOC_VER}
- dev-haskell/pandoc-citeproc
- >=dev-lang/R-2.11.1
- >=dev-libs/boost-1.63:=
- >=dev-libs/mathjax-2.7.4
- sys-apps/util-linux
- >=sys-devel/clang-3.5.0:*
- sys-libs/zlib
- >=virtual/jre-1.8:=
- x11-libs/pango
- !dedicated? (
- >=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
- >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtwebengine-${QT_VER}:${QT_SLOT}[widgets]
- >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
- >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
- server? ( sys-libs/pam )
- )
- dedicated? ( sys-libs/pam )
- !libressl? ( dev-libs/openssl:0= )
- libressl? ( dev-libs/libressl:0= )"
-DEPEND="${RDEPEND}
- app-arch/unzip
- dev-java/ant-core
- >=virtual/jdk-1.8:=
- virtual/pkgconfig"
-# test? ( dev-java/junit:4 )
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.2.1335-prefs.patch
- "${FILESDIR}"/${PN}-1.2.1335-paths.patch
- "${FILESDIR}"/${PN}-1.2.1335-pandoc.patch
- "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
- "${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
- "${FILESDIR}"/${PN}-1.0.44-systemd.patch
- "${FILESDIR}"/${PN}-1.2.1335-core.patch
- "${FILESDIR}"/${PN}-1.2.1335-fix-ptr-int-compare.patch
- "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
- "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
- "${FILESDIR}"/${PN}-1.2.1335-boost-1.72-filesystem.patch
-)
-
-src_unpack() {
- unpack ${P}.tar.gz gwt-${GWT_VER}.zip
- cd "${S}" || die
- mkdir -p src/gwt/lib/{gin,gwt} \
- dependencies/common/dictionaries \
- src/gwt/lib/selenium/${SELENIUM_VER} \
- src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die
- mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die
- unzip -qd src/gwt/lib/gin/${GIN_VER} \
- "${DISTDIR}"/gin-${GIN_VER}.zip || die
- unzip -qd dependencies/common/dictionaries \
- "${DISTDIR}"/core-dictionaries.zip || die
- unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \
- "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die
- cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \
- src/gwt/lib/selenium/${SELENIUM_VER}/ || die
- cp "${DISTDIR}"/chromedriver-linux \
- src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die
- cd dependencies/common || die
- unpack packrat-${PACKRAT_VER}.tar.gz
- unpack rmarkdown-${RMARKDOWN_VER}.tar.gz
- unpack shinyapps-${SHINYAPPS_VER}.tar.gz
- unpack rsconnect_${RSCONNECT_VER}.tar.gz
- cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \
- . || die
- cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \
- . || die
-}
-
-src_prepare() {
- cmake-utils_src_prepare
- java-pkg-2_src_prepare
- egit_clean
-
- # Enable CMake to install our .service file for systemd usage
- mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
- cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
-
- # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
- # this sed hack for now. ~RMH
- sed -i \
- -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
- src/cpp/server/ServerOptions.cpp \
- src/cpp/session/SessionOptions.cpp || die
-
- # use mathjax from system
- ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
-
- # make sure icons and mime stuff are with prefix
- sed -i \
- -e "s:/usr:${EPREFIX}/usr:g" \
- CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
-
- # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
- sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \
- -i src/cpp/server/ServerOptions.cpp \
- || die
-
- # Set the rsession.conf file location for Gentoo prefix
- sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \
- -i src/cpp/session/SessionOptions.cpp \
- || die
-
- # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
- # It provides a library that has its version number appended to the end,
- # which is difficult to handle in cmake, as find_library does not support
- # searching for wildcard library names. So I find the library name from the
- # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
- rm -rf "${S}"/src/cpp/desktop/3rdparty || die
- local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
- $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
- | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
- -e 's@LIBS \*= -l@@')
- sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
- -i "${S}"/src/cpp/desktop/CMakeLists.txt \
- || die
-
- # The git commit for tag: git rev-list -n 1 v${PV}
- sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
- -i "${S}"/CMakeLists.txt \
- "${S}"/CMakeGlobals.txt \
- || die
-}
-
-src_configure() {
- export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
- export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
- export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
-
- local mycmakeargs=(
- -DDISTRO_SHARE=share/${PN}
- -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
- -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
- -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
- -DRSTUDIO_VERIFY_R_VERSION=FALSE
- )
-
- cmake-utils_src_configure
-}
-
-src_compile() {
- # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
- # P: /root/.oracle_jre_usage.
- export ANT_OPTS="-Duser.home=${T}"
- cmake-utils_src_compile
-}
-
-src_install() {
- export ANT_OPTS="-Duser.home=${T}"
- cmake-utils_src_install
- pax-mark m "${ED}/usr/bin/rstudio"
- doconfd "${FILESDIR}"/rstudio-server.conf
- dodir /etc/rstudio
- insinto /etc/rstudio
- doins "${FILESDIR}"/rsession.conf
- dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
- if use dedicated || use server; then
- dopamd src/cpp/server/extras/pam/rstudio
- newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
- fi
-}
-
-pkg_preinst() {
- use dedicated || gnome2_icon_savelist
- java-pkg-2_pkg_preinst
-}
-
-pkg_postinst() {
- use dedicated || { xdg_desktop_database_update
- xdg_mimeinfo_database_update
- gnome2_icon_cache_update ;}
-
- if use dedicated || use server; then
- enewgroup rstudio-server
- enewuser rstudio-server -1 -1 -1 rstudio-server
- fi
-}
-
-pkg_postrm() {
- use dedicated || { xdg_desktop_database_update
- xdg_mimeinfo_database_update
- gnome2_icon_cache_update ;}
-}