summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorDavid Seifert <soap@gentoo.org>2016-09-03 10:55:18 +0200
committerDavid Seifert <soap@gentoo.org>2016-09-03 10:55:18 +0200
commit9574df41e529782826a9e6b32bdbac1678f47875 (patch)
tree2edb5ce830068f38609d5430a0c5094cc2749894
parentsci-biology/tophat: Various QA fixes, handle python properly (diff)
downloadgentoo-9574df41e529782826a9e6b32bdbac1678f47875.tar.gz
gentoo-9574df41e529782826a9e6b32bdbac1678f47875.tar.bz2
gentoo-9574df41e529782826a9e6b32bdbac1678f47875.zip
sci-biology/bwa: Version bump to 0.7.15
Package-Manager: portage-2.3.0
-rw-r--r--sci-biology/bwa/Manifest2
-rw-r--r--sci-biology/bwa/bwa-0.7.15.ebuild (renamed from sci-biology/bwa/bwa-0.7.13.ebuild)11
-rw-r--r--sci-biology/bwa/files/bwa-0.7.15-Makefile.patch (renamed from sci-biology/bwa/files/bwa-0.7.13-Makefile.patch)0
3 files changed, 6 insertions, 7 deletions
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest
index 3cf0fb132cb..5589b916838 100644
--- a/sci-biology/bwa/Manifest
+++ b/sci-biology/bwa/Manifest
@@ -1,2 +1,2 @@
DIST bwa-0.7.12.tar.bz2 184599 SHA256 701dcad147ae470d741717a72c369b338df7f80bff4bb8eee8176c66f16d608c SHA512 3ea093b861c1596d20b1ee0336468b66e52bc9f26e3d0bcbba0ddccc7fe9b1af2c7e1ed2a4e1366fe93fec348152becc126d5f4685dae54f05e6c582488b3abd WHIRLPOOL 4b8651dedf2e09980850e7212fc2a77dc86b06f708af2077cff28cc843858b15825a203e3e02e7728418e9eb539004404f7c4b234c1f65de6a7b7dfe4dcfd1d0
-DIST bwa-0.7.13.tar.bz2 189670 SHA256 559b3c63266e5d5351f7665268263dbb9592f3c1c4569e7a4a75a15f17f0aedc SHA512 37966e914321d17b5a1d4e3a7786abdd9dd476e4dd7aaf924fb0e0726e3827a1414d9ffccc114a1a334943c8dde38273ce5fafdd1b429ab0f3cbf47ddbd6bedf WHIRLPOOL 86b278b301aa1ff4334c0d78709a61dc034895deb6aa2bd60ee45a595198343e7d60db458c61168b8c61a6ace21db394583b6314a56df3171a151f554c07f769
+DIST bwa-0.7.15.tar.bz2 189806 SHA256 2f56afefa49acc9bf45f12edb58e412565086cc20be098b8bf15ec07de8c0515 SHA512 cb862342aef1042751de55df095b4dac8344d9b41f00b0cca7f748829bf7fba71d15e4c7deaaa255eca6ee6af3ba58b370944ee702150cf17c29fb50ff25fa26 WHIRLPOOL 5d57d37339ff6c68c47ba0147ea21e4faa9a6cbbea2e66130e69bbb19802621ad22ae26889c06000109684961ed9d872605bffd469ddf97af2f1fdca3b8bd316
diff --git a/sci-biology/bwa/bwa-0.7.13.ebuild b/sci-biology/bwa/bwa-0.7.15.ebuild
index 2ce3ff34f35..fab85aacfaf 100644
--- a/sci-biology/bwa/bwa-0.7.13.ebuild
+++ b/sci-biology/bwa/bwa-0.7.15.ebuild
@@ -17,13 +17,12 @@ KEYWORDS="~amd64 ~x86 ~x64-macos"
RDEPEND="dev-lang/perl"
-PATCHES=(
- "${FILESDIR}"/${P}-Makefile.patch
-)
+DOCS=( NEWS.md README-alt.md README.md )
+PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
-src_prepare() {
- default
+src_configure() {
tc-export CC AR
+ default
}
src_install() {
@@ -34,5 +33,5 @@ src_install() {
exeinto /usr/libexec/${PN}
doexe qualfa2fq.pl xa2multi.pl
- dodoc NEWS.md README-alt.md README.md
+ einstalldocs
}
diff --git a/sci-biology/bwa/files/bwa-0.7.13-Makefile.patch b/sci-biology/bwa/files/bwa-0.7.15-Makefile.patch
index 39b437a0289..39b437a0289 100644
--- a/sci-biology/bwa/files/bwa-0.7.13-Makefile.patch
+++ b/sci-biology/bwa/files/bwa-0.7.15-Makefile.patch