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authorMarek Szuba <marecki@gentoo.org>2020-03-24 23:06:38 +0100
committerMarek Szuba <marecki@gentoo.org>2020-03-24 23:07:43 +0100
commit9e4c8752a1e910bd8fc65e500672de0019b2cffd (patch)
treeff093c08d4fb8c094bf5607d4a098f066363d5d5
parentsys-fs/fuse: Bump to version 3.9.1 (diff)
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dev-perl/Bio-DB-HTS: respect LDFLAGS
Closes: https://bugs.gentoo.org/713816 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Marek Szuba <marecki@gentoo.org>
-rw-r--r--dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild3
-rw-r--r--dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild1
-rw-r--r--dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch22
3 files changed, 25 insertions, 1 deletions
diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
index 745f39851f3..76af57429d3 100644
--- a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -24,6 +24,7 @@ DEPEND="${RDEPEND}
test? ( dev-perl/Test-LeakTrace )"
PATCHES=(
+ "${FILESDIR}/2.11-build_env_ldflags.patch"
"${FILESDIR}/2.11-build_split_htslib_opts.patch"
)
diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
index 6b6736ef6c1..575961ddaf1 100644
--- a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
@@ -24,6 +24,7 @@ DEPEND="${RDEPEND}
test? ( dev-perl/Test-LeakTrace )"
PATCHES=(
+ "${FILESDIR}/2.11-build_env_ldflags.patch"
"${FILESDIR}/2.11-build_split_htslib_opts.patch"
)
diff --git a/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch b/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch
new file mode 100644
index 00000000000..eef07791418
--- /dev/null
+++ b/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch
@@ -0,0 +1,22 @@
+--- a/Build.PL
++++ b/Build.PL
+@@ -107,11 +107,17 @@
+ my $hts_include = $self->config_data('hts_include');
+ my $hts_lib = $self->config_data('hts_lib');
+ my $static = $self->args('static');
++
++ my @env_linker_flags;
++ if ( defined $ENV{LDFLAGS} ) {
++ @env_linker_flags = split qr{\s+}, $ENV{LDFLAGS};
++ }
++
+ $self->include_dirs([$hts_include]);
+ if($static){
+- $self->extra_linker_flags("-L$hts_lib", '-lhts', '-lpthread', '-lz');
++ $self->extra_linker_flags(@env_linker_flags, "-L$hts_lib", '-lhts', '-lpthread', '-lz');
+ }else{
+- $self->extra_linker_flags("-L$hts_lib", "-Wl,-rpath,$hts_lib", '-lhts', '-lpthread', '-lz');
++ $self->extra_linker_flags(@env_linker_flags, "-L$hts_lib", "-Wl,-rpath,$hts_lib", '-lhts', '-lpthread', '-lz');
+ }
+ }
+