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| author |   David Seifert <soap@gentoo.org> | 2021-10-03 19:41:36 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2021-10-03 19:41:36 +0200 |
| commit | a7e45d492762de669f6e84b5df12aaf95cae1a1d (patch) | |
| tree | 98e400e7c2e4dc0410765c92a44e238196361976 | |
| parent | dev-python/PyQt-builder: add 1.11.0 (diff) | |
| download | gentoo-a7e45d492762de669f6e84b5df12aaf95cae1a1d.tar.gz gentoo-a7e45d492762de669f6e84b5df12aaf95cae1a1d.tar.bz2 gentoo-a7e45d492762de669f6e84b5df12aaf95cae1a1d.zip | |
sci-libs/htslib: add 1.13
Bug: https://bugs.gentoo.org/799788
Signed-off-by: David Seifert <soap@gentoo.org>
| -rw-r--r-- | sci-libs/htslib/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/htslib/htslib-1.13.ebuild | 52 |
2 files changed, 53 insertions, 0 deletions
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest index 3aac577a0cfd..9e65f247fdf3 100644 --- a/sci-libs/htslib/Manifest +++ b/sci-libs/htslib/Manifest @@ -1 +1,2 @@ DIST htslib-1.10.2.tar.bz2 1306320 BLAKE2B f877bd9c160921f498f4160f687094a1a369732bc9f61cd94a3c9ca311fa9f865505a205e38e0d348a1010b627f1ef07b590cd7e69c945df1d804133b17b2fd1 SHA512 3ecb83b0abccf731cd42b889e352e10dd922524f6e78bcafb04f8c6c71457b0dc1f5f22690b36f03cce7d97a6a905db286243ef4858138068dcac368e4ae1075 +DIST htslib-1.13.tar.bz2 4226834 BLAKE2B ae1f64e564f0f7bea80ea9d276b5d5b2b04fa3c8bd58f2c68966225b4324962f34d8a26b74267ab90dc530dfced1b9c01702d25918fd7a7c74e13913f00d5007 SHA512 16a3d61c115b71406bc4411a0c1176909166b52c4f7bb11614e398df4defaec4d09763413053e4d0d5916921c866d20019096d8fed866e77f9f1cafbd1e95b16 diff --git a/sci-libs/htslib/htslib-1.13.ebuild b/sci-libs/htslib/htslib-1.13.ebuild new file mode 100644 index 000000000000..cfd9cfb3263e --- /dev/null +++ b/sci-libs/htslib/htslib-1.13.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="C library for high-throughput sequencing data formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0/3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bzip2 curl +lzma" + +RDEPEND=" + sys-libs/zlib + bzip2? ( app-arch/bzip2 ) + curl? ( net-misc/curl ) + lzma? ( app-arch/xz-utils )" +DEPEND="${RDEPEND}" + +src_prepare() { + default + + # upstream injects LDFLAGS into the .pc file, + # which is a big nono for QA + sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ + -i htslib.pc.in || die +} + +src_configure() { + econf \ + --disable-gcs \ + --disable-plugins \ + --disable-s3 \ + $(use_enable bzip2 bz2) \ + $(use_enable curl libcurl) \ + $(use_enable lzma) +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_install() { + default + + # doesn't use libtool, can't disable static libraries + find "${ED}" -name '*.a' -delete || die +} |