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authorPatrice Clement <monsieurp@gentoo.org>2015-10-07 23:08:48 +0000
committerPatrice Clement <monsieurp@gentoo.org>2015-10-07 23:09:43 +0000
commit02b0fcbb539a7d9518e3095ee8aea1ceed105eb7 (patch)
treefd1cde5942069a5ba28cccad97363fe601b9683c /dev-java/colt
parentMerge remote-tracking branch 'remotes/github/pr/159' courtesy of Sergiy Borod... (diff)
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dev-java/colt: Remove dev-java/concurrent-util dependency. Fixes bug 546496.
Monkey patch sources and make use of java.concurrent.util packages from the SDK instead. Raise jdk/jre to 1.7. Drop ppc+ppc64. Package-Manager: portage-2.2.20.1 Signed-off-by: Patrice Clement <monsieurp@gentoo.org>
Diffstat (limited to 'dev-java/colt')
-rw-r--r--dev-java/colt/colt-1.2.0-r3.ebuild48
-rw-r--r--dev-java/colt/files/colt-1.2.0-remove-concurrent-util-imports.patch210
2 files changed, 258 insertions, 0 deletions
diff --git a/dev-java/colt/colt-1.2.0-r3.ebuild b/dev-java/colt/colt-1.2.0-r3.ebuild
new file mode 100644
index 00000000000..68ae524fced
--- /dev/null
+++ b/dev-java/colt/colt-1.2.0-r3.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+JAVA_PKG_IUSE="source doc"
+
+inherit java-pkg-2 java-ant-2 eutils
+
+DESCRIPTION="A set of Open Source Libraries for High Performance Scientific and Technical Computing in Java"
+SRC_URI="http://dsd.lbl.gov/~hoschek/colt-download/releases/${P}.tar.gz"
+HOMEPAGE="http://www-itg.lbl.gov/~hoschek/colt/"
+
+LICENSE="colt"
+IUSE=""
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=">=virtual/jdk-1.7"
+RDEPEND=">=virtual/jre-1.7"
+
+S="${WORKDIR}/${PN}"
+
+EANT_BUILD_TARGET="javac jar"
+JAVA_ANT_REWRITE_CLASSPATH="true"
+JAVA_ANT_ENCODING="ISO-8859-1"
+
+# [0]: I don't know but it must be useful.
+# [1]: Monkey patch manually some classes to get rid of the
+# oswego.edu.concurrent.util imports.
+PATCHES=(
+ "${FILESDIR}/${P}-benchmark-no-deprecation.patch"
+ "${FILESDIR}/${P}-remove-concurrent-util-imports.patch"
+)
+
+java_prepare() {
+ epatch "${PATCHES[@]}"
+
+ find "${S}" -name \*.jar -exec rm -v {} \; || die
+}
+
+src_install() {
+ java-pkg_dojar "lib/${PN}.jar"
+
+ dohtml README.html || die
+ use doc && java-pkg_dojavadoc doc/api
+ use source && java-pkg_dosrc src/*
+}
diff --git a/dev-java/colt/files/colt-1.2.0-remove-concurrent-util-imports.patch b/dev-java/colt/files/colt-1.2.0-remove-concurrent-util-imports.patch
new file mode 100644
index 00000000000..2cfbef761ba
--- /dev/null
+++ b/dev-java/colt/files/colt-1.2.0-remove-concurrent-util-imports.patch
@@ -0,0 +1,210 @@
+--- src/cern/colt/matrix/linalg/SmpBlas.java.orig 2015-10-07 22:23:44.969486000 +0000
++++ src/cern/colt/matrix/linalg/SmpBlas.java 2015-10-07 22:29:15.475486000 +0000
+@@ -10,7 +10,8 @@
+
+ import cern.colt.matrix.DoubleMatrix1D;
+ import cern.colt.matrix.DoubleMatrix2D;
+-import EDU.oswego.cs.dl.util.concurrent.FJTask;
++
++import java.util.concurrent.ForkJoinTask;
+ /**
+ Parallel implementation of the Basic Linear Algebra System for symmetric multi processing boxes.
+ Currently only a few algorithms are parallelised; the others are fully functional, but run in sequential mode.
+@@ -198,7 +199,7 @@
+
+ // set up concurrent tasks
+ int span = width/noOfTasks;
+- final FJTask[] subTasks = new FJTask[noOfTasks];
++ final ForkJoinTask[] subTasks = new ForkJoinTask[noOfTasks];
+ for (int i=0; i<noOfTasks; i++) {
+ final int offset = i*span;
+ if (i==noOfTasks-1) span = width - span*i; // last span may be a bit larger
+@@ -217,24 +218,30 @@
+ CC = C.viewPart(offset,0,span,p);
+ }
+
+- subTasks[i] = new FJTask() {
++ subTasks[i] = new ForkJoinTask() {
+ public void run() {
+ seqBlas.dgemm(transposeA,transposeB,alpha,AA,BB,beta,CC);
+ //System.out.println("Hello "+offset);
+ }
++
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
+ };
+ }
+
+ // run tasks and wait for completion
+- try {
+- this.smp.taskGroup.invoke(
+- new FJTask() {
+- public void run() {
+- coInvoke(subTasks);
+- }
+- }
+- );
+- } catch (InterruptedException exc) {}
++ this.smp.taskGroup.invoke(
++ new ForkJoinTask() {
++ public void run() {
++ invokeAll(subTasks);
++ }
++
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
++ }
++ );
+ }
+ public void dgemv(final boolean transposeA, final double alpha, DoubleMatrix2D A, final DoubleMatrix1D x, final double beta, DoubleMatrix1D y) {
+ /*
+@@ -271,7 +278,7 @@
+
+ // set up concurrent tasks
+ int span = width/noOfTasks;
+- final FJTask[] subTasks = new FJTask[noOfTasks];
++ final ForkJoinTask[] subTasks = new ForkJoinTask[noOfTasks];
+ for (int i=0; i<noOfTasks; i++) {
+ final int offset = i*span;
+ if (i==noOfTasks-1) span = width - span*i; // last span may be a bit larger
+@@ -280,24 +287,30 @@
+ final DoubleMatrix2D AA = A.viewPart(offset,0,span,n);
+ final DoubleMatrix1D yy = y.viewPart(offset,span);
+
+- subTasks[i] = new FJTask() {
++ subTasks[i] = new ForkJoinTask() {
+ public void run() {
+ seqBlas.dgemv(transposeA,alpha,AA,x,beta,yy);
+ //System.out.println("Hello "+offset);
+ }
++
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
+ };
+ }
+
+ // run tasks and wait for completion
+- try {
+- this.smp.taskGroup.invoke(
+- new FJTask() {
+- public void run() {
+- coInvoke(subTasks);
+- }
+- }
+- );
+- } catch (InterruptedException exc) {}
++ this.smp.taskGroup.invoke(
++ new ForkJoinTask() {
++ public void run() {
++ invokeAll(subTasks);
++ }
++
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
++ }
++ );
+ }
+ public void dger(double alpha, DoubleMatrix1D x, DoubleMatrix1D y, DoubleMatrix2D A) {
+ seqBlas.dger(alpha,x,y,A);
+@@ -369,9 +382,6 @@
+ /**
+ * Prints various snapshot statistics to System.out; Simply delegates to {@link EDU.oswego.cs.dl.util.concurrent.FJTaskRunnerGroup#stats}.
+ */
+-public void stats() {
+- if (this.smp!=null) this.smp.stats();
+-}
+ private double xsum(DoubleMatrix2D A) {
+ double[] sums = run(A,true,
+ new Matrix2DMatrix2DFunction() {
+--- src/cern/colt/matrix/linalg/Smp.java.orig 2015-10-07 21:08:19.443486000 +0000
++++ src/cern/colt/matrix/linalg/Smp.java 2015-10-07 22:28:24.722486000 +0000
+@@ -9,12 +9,13 @@
+ package cern.colt.matrix.linalg;
+
+ import cern.colt.matrix.DoubleMatrix2D;
+-import EDU.oswego.cs.dl.util.concurrent.FJTask;
+-import EDU.oswego.cs.dl.util.concurrent.FJTaskRunnerGroup;
++import java.util.concurrent.ForkJoinTask;
++import java.util.concurrent.ForkJoinPool;
++
+ /*
+ */
+ class Smp {
+- protected FJTaskRunnerGroup taskGroup; // a very efficient and light weight thread pool
++ protected ForkJoinPool taskGroup; // a very efficient and light weight thread pool
+
+ protected int maxThreads;
+ /**
+@@ -24,41 +25,39 @@
+ maxThreads = Math.max(1,maxThreads);
+ this.maxThreads = maxThreads;
+ if (maxThreads>1) {
+- this.taskGroup = new FJTaskRunnerGroup(maxThreads);
++ this.taskGroup = new ForkJoinPool(maxThreads);
+ }
+ else { // avoid parallel overhead
+ this.taskGroup = null;
+ }
+ }
+-/**
+- * Clean up deamon threads, if necessary.
+- */
+-public void finalize() {
+- if (this.taskGroup!=null) this.taskGroup.interruptAll();
+-}
+ protected void run(final DoubleMatrix2D[] blocksA, final DoubleMatrix2D[] blocksB, final double[] results, final Matrix2DMatrix2DFunction function) {
+- final FJTask[] subTasks = new FJTask[blocksA.length];
++ final ForkJoinTask[] subTasks = new ForkJoinTask[blocksA.length];
+ for (int i=0; i<blocksA.length; i++) {
+ final int k = i;
+- subTasks[i] = new FJTask() {
++ subTasks[i] = new ForkJoinTask() {
+ public void run() {
+ double result = function.apply(blocksA[k],blocksB != null ? blocksB[k] : null);
+ if (results!=null) results[k] = result;
+ //System.out.print(".");
+ }
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
+ };
+ }
+
+ // run tasks and wait for completion
+- try {
+- this.taskGroup.invoke(
+- new FJTask() {
+- public void run() {
+- coInvoke(subTasks);
+- }
+- }
+- );
+- } catch (InterruptedException exc) {}
++ this.taskGroup.invoke(
++ new ForkJoinTask() {
++ public void run() {
++ invokeAll(subTasks);
++ }
++ public boolean exec() { return true; }
++ public void setRawResult(Object o) {}
++ public Object getRawResult() {return null;}
++ }
++ );
+ }
+ protected DoubleMatrix2D[] splitBlockedNN(DoubleMatrix2D A, int threshold, long flops) {
+ /*
+@@ -186,10 +185,4 @@
+ }
+ return blocks;
+ }
+-/**
+- * Prints various snapshot statistics to System.out; Simply delegates to {@link EDU.oswego.cs.dl.util.concurrent.FJTaskRunnerGroup#stats}.
+- */
+-public void stats() {
+- if (this.taskGroup!=null) this.taskGroup.stats();
+-}
+ }