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| author |   David Seifert <soap@gentoo.org> | 2017-11-16 13:32:54 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-11-16 14:16:45 +0100 |
| commit | acd76729254ed012b6898eb33fcc59ab8c2076e4 (patch) | |
| tree | 60057fa3db0a39a972284f8ab622544d5fecf0a7 /sci-biology/STAR/STAR-2.5.3a.ebuild | |
| parent | sci-biology/HTSeq: Initial addition (diff) | |
| download | gentoo-acd76729254ed012b6898eb33fcc59ab8c2076e4.tar.gz gentoo-acd76729254ed012b6898eb33fcc59ab8c2076e4.tar.bz2 gentoo-acd76729254ed012b6898eb33fcc59ab8c2076e4.zip | |
sci-biology/STAR: Initial addition
Closes: https://github.com/gentoo/sci/pull/814
Package-Manager: Portage-2.3.14, Repoman-2.3.6
Diffstat (limited to 'sci-biology/STAR/STAR-2.5.3a.ebuild')
| -rw-r--r-- | sci-biology/STAR/STAR-2.5.3a.ebuild | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/STAR/STAR-2.5.3a.ebuild b/sci-biology/STAR/STAR-2.5.3a.ebuild new file mode 100644 index 000000000000..73743cbb4e59 --- /dev/null +++ b/sci-biology/STAR/STAR-2.5.3a.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" +HOMEPAGE="https://github.com/alexdobin/STAR" +SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND="sci-libs/htslib:=" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( "${FILESDIR}"/${PN}-2.5.3a-fix-build-system.patch ) +DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf ) + +pkg_pretend() { + [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp +} + +pkg_setup() { + [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp +} + +src_configure() { + tc-export CC CXX PKG_CONFIG +} + +src_compile() { + emake -C source STAR +} + +src_install() { + dobin source/STAR + einstalldocs +} |