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authorSergei Trofimovich <slyfox@gentoo.org>2016-09-18 23:51:40 +0100
committerSergei Trofimovich <slyfox@gentoo.org>2016-09-18 23:51:40 +0100
commit3602af844edaa72d2e2e62018e61466fa3117a51 (patch)
tree2d597e9d83973e6a79420d635d97c60cbdc2f6db /sci-biology/abyss/abyss-1.9.0.ebuild
parentmedia-plugins/gst-transcoder: version bump 1.8.1 → 1.8.2 (diff)
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sci-biology/abyss: pin boost subslot, noticed by Soap
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology/abyss/abyss-1.9.0.ebuild')
-rw-r--r--sci-biology/abyss/abyss-1.9.0.ebuild53
1 files changed, 0 insertions, 53 deletions
diff --git a/sci-biology/abyss/abyss-1.9.0.ebuild b/sci-biology/abyss/abyss-1.9.0.ebuild
deleted file mode 100644
index c32b477ad42..00000000000
--- a/sci-biology/abyss/abyss-1.9.0.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-inherit autotools toolchain-funcs
-
-DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
-SRC_URI="https://github.com/bcgsc/abyss/archive/1.9.0.tar.gz -> ${P}.tar.gz"
-
-LICENSE="abyss"
-SLOT="0"
-IUSE="+mpi openmp misc-haskell"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- dev-cpp/sparsehash
- dev-libs/boost
- misc-haskell? ( dev-libs/gmp:0=
- virtual/libffi:0=
- )
- mpi? ( virtual/mpi )
-"
-DEPEND="${RDEPEND}
- misc-haskell? ( dev-lang/ghc
- dev-haskell/mmap )
-"
-
-# todo: --enable-maxk=N configure option
-# todo: fix automagic mpi toggling
-
-PATCHES=(
- "${FILESDIR}"/${P}-ac_prog_ar.patch
- "${FILESDIR}"/${P}-gcc-6.patch
-)
-
-src_prepare() {
- default
- tc-export AR
- sed -i -e "s/-Werror//" configure.ac || die #365195
- sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
- eautoreconf
-}
-
-src_configure() {
- # disable building haskell tool Misc/samtobreak
- # unless request by user: bug #534412
- use misc-haskell || export ac_cv_prog_ac_ct_GHC=
-
- econf $(use_enable openmp)
-}