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authorDavid Seifert <soap@gentoo.org>2016-09-03 10:55:18 +0200
committerDavid Seifert <soap@gentoo.org>2016-09-03 10:55:18 +0200
commit9574df41e529782826a9e6b32bdbac1678f47875 (patch)
tree2edb5ce830068f38609d5430a0c5094cc2749894 /sci-biology/bwa/bwa-0.7.15.ebuild
parentsci-biology/tophat: Various QA fixes, handle python properly (diff)
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sci-biology/bwa: Version bump to 0.7.15
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology/bwa/bwa-0.7.15.ebuild')
-rw-r--r--sci-biology/bwa/bwa-0.7.15.ebuild37
1 files changed, 37 insertions, 0 deletions
diff --git a/sci-biology/bwa/bwa-0.7.15.ebuild b/sci-biology/bwa/bwa-0.7.15.ebuild
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+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
+HOMEPAGE="http://bio-bwa.sourceforge.net/"
+SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~x64-macos"
+
+RDEPEND="dev-lang/perl"
+
+DOCS=( NEWS.md README-alt.md README.md )
+PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
+
+src_configure() {
+ tc-export CC AR
+ default
+}
+
+src_install() {
+ dobin bwa
+
+ doman bwa.1
+
+ exeinto /usr/libexec/${PN}
+ doexe qualfa2fq.pl xa2multi.pl
+
+ einstalldocs
+}