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authorDavid Seifert <soap@gentoo.org>2017-02-19 19:41:38 +0100
committerDavid Seifert <soap@gentoo.org>2017-02-19 19:44:39 +0100
commitb40760bd69c57dae5c57650ee8507e5ac0d54b1c (patch)
treed7f9eda41d0c3bea0672d71435d21d4bf314b024 /sci-biology
parentsci-biology/embassy-vienna: Remove old (diff)
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sci-biology/emboss: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3937
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/emboss/emboss-6.6.0.ebuild67
1 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/emboss/emboss-6.6.0.ebuild b/sci-biology/emboss/emboss-6.6.0.ebuild
deleted file mode 100644
index 8b1d211efd1..00000000000
--- a/sci-biology/emboss/emboss-6.6.0.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=1
-
-inherit autotools-utils emboss-r1 eutils readme.gentoo-r1
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos"
-IUSE+=" minimal"
-LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0"
-
-RDEPEND+="!games-action/xbomber
- !sys-devel/cons"
-PDEPEND+="
- !minimal? (
- sci-biology/aaindex
- sci-biology/cutg
- sci-biology/primer3
- sci-biology/prints
- sci-biology/prosite
- sci-biology/rebase
- )"
-
-S="${WORKDIR}"/EMBOSS-${PV}
-
-DOCS=( ChangeLog AUTHORS NEWS THANKS FAQ )
-
-PATCHES=(
- "${FILESDIR}"/${P}_fix-build-system.patch
- "${FILESDIR}"/${P}_FORTIFY_SOURCE-fix.patch
- "${FILESDIR}"/${P}_plplot-declarations.patch
- "${FILESDIR}"/${P}_qa-implicit-declarations.patch
-)
-
-src_install() {
- # Use autotools-utils_* to remove useless *.la files
- autotools-utils_src_install
-
- readme.gentoo_create_doc
-
- # Install env file for setting libplplot and acd files path.
- cat > 22emboss <<- EOF
- # ACD files location
- EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd"
- EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data"
- EOF
- doenvd 22emboss
-
- # Remove useless dummy files
- find "${ED}"/usr/share/EMBOSS -name dummyfile -delete || die "Failed to remove dummy files."
-
- # Move the provided codon files to a different directory. This will avoid
- # user confusion and file collisions on case-insensitive file systems (see
- # bug #115446). This change is documented in "README.gentoo".
- mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} || \
- die "Failed to move CODON directory."
-}
-
-pkg_postinst() {
- readme.gentoo_print_elog
-}