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authorManuel Rüger <mrueg@gentoo.org>2017-02-15 00:39:54 +0100
committerManuel Rüger <mrueg@gentoo.org>2017-02-15 00:39:54 +0100
commitdcd46063e91b45f60d135447ea6d322002322b18 (patch)
tree96073e92d6d8443aa15e6676af85675e6c08d453 /sci-biology
parentsys-apps/miscfiles: Remove old (diff)
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sci-biology/psipred: Remove old
Package-Manager: portage-2.3.3
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/psipred/Manifest2
-rw-r--r--sci-biology/psipred/psipred-3.1.ebuild51
-rw-r--r--sci-biology/psipred/psipred-3.2.ebuild51
3 files changed, 0 insertions, 104 deletions
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index 1c17d7b94a7..4b0dd552e4b 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -1,7 +1,5 @@
DIST psipred3.3.tar.gz 1239746 SHA256 133eef16ba4ac6ff5e10a757290ef794552833f42ed8251ff866ae56d9527c40 SHA512 38f5dd0f6eb6fc38888f9a850604b95904a8626d6862eb0b2a389caaf49af8f81436aa78a087da22281113d8afad2d28e5109ddade7d17718c1028eed8325b7e WHIRLPOOL d3883df88bde12a0f5ba6e195dc37b7104db36d16b5846b978fb045def6c4452edce4361dcced27ed36937bbd8d0e8dd4391b8592dca390941b3450e49cc5d34
DIST psipred3.4.tar.gz 1102416 SHA256 c0eb8877313eb0564d34fc4d0e2d8d22e09d84d245e41008227560a10e64da9d SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919 WHIRLPOOL bdb47f296db1172df08f84b8cf18782e8585a8bc49f190b9783192db0e9d632bd6660437e8a35c24bb5970ca7a556b368c5a93373772f20d4be9a98ef963b902
DIST psipred3.5.tar.gz 1101579 SHA256 107979a6bee968ba1df1ac1ee63bc1611105b83a7d519ab814f848ed955b76d8 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2 WHIRLPOOL fb07fdf550af6c9942e131a4856942c74adb3a7954c433ac7bc27680d9ab2b3db82a5178a15bcea224f7bb0da3cd84c94a4e9188be4fcbd49851037f631732e3
-DIST psipred31.tar.gz 746797 SHA256 2150696cae281bc942a18fc5f1e2057ed70cb6ee7b492c9594cbd99b8f6987dd SHA512 a04482fc5a08de03b2c1ac3eafbc289d476906811ef2557681f00e3ba865488c6061a194c5e12fe3ff38d31f42f13f4e783de1ca4a04508dd38a93c3ad848710 WHIRLPOOL 288d161698726a944b40acb3e2c355e61bad3644bf5edca40fd5e478f9d37e3acc9a91ee199fbadea680ab3a8c974eb8f80dd700dfe790e84d8a862148538dff
-DIST psipred32.tar.gz 747120 SHA256 0775b0f07df87b2afd4989a378fc9b47f462507a264aaf2d56dd0243d9d00343 SHA512 49660d1c3cb9aa4c3ab13e721e23b83d70d0b6ecb772b08bd1058d3293dbcc9642d63092dd9746aa2a3a9085a13ba91e9849172d36954228a4f7a16e6e81050d WHIRLPOOL 24413200771fcee89c123fad25033b3230de3fdd82016ad7d084ddb096c081c46537f35c06578dad84a79a62c493e03b8f7b51be296b04d9568ea00b94293360
DIST psipred321.tar.gz 747151 SHA256 5e88f2402e333be401b3022937b0167a33203f6289a84dd344941546f550f1f8 SHA512 b742f5fd3151bd624452bf37761fa66d364ea5b28d9d005ae6ce6f52fc6f2b17df31d6f1e600bd6c57776a1812f22b1eafbca781b430811a010d74f157a75cd1 WHIRLPOOL bb7111851ffe533b30fd6b77fb1ae396f0dd6506ce941944974c3b5c73c41d1a5b04c5af3d7e697aeb0640c03168b78d8832747940ed0de087df784d2d27e9f1
DIST tdbdata.tar.gz 40241247 SHA256 87b7743538898f6cdf89cc5c18e1ecd040bc6223a01821d2bfc3109f4571851f SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c WHIRLPOOL 37bc0912c6a71d1396489161465c690fb63d28167694d2e43553b6684c1f1f88866b2bf71f9531c7a7f41fc8ca81a6c93c2895ed498a07e3c4836f8c8bf4a34e
diff --git a/sci-biology/psipred/psipred-3.1.ebuild b/sci-biology/psipred/psipred-3.1.ebuild
deleted file mode 100644
index b81c4149b56..00000000000
--- a/sci-biology/psipred/psipred-3.1.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/${PV}-Makefile.patch \
- "${FILESDIR}"/${PV}-path.patch \
- "${FILESDIR}"/${PV}-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC) || die "emake failed"
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install || die "installation failed"
- dobin runpsipred* bin/* BLAST+/runpsipred* || die
- insinto /usr/share/${PN}
- doins -r data || die "failed to install data"
- dodoc README || die "nothing to read"
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
diff --git a/sci-biology/psipred/psipred-3.2.ebuild b/sci-biology/psipred/psipred-3.2.ebuild
deleted file mode 100644
index 418179c4127..00000000000
--- a/sci-biology/psipred/psipred-3.2.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit eutils prefix toolchain-funcs versionator
-
-MY_P="${PN}$(delete_all_version_separators)"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- sci-biology/ncbi-tools
- || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
-DEPEND=""
-
-S="${WORKDIR}"
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/${PV}-fgets.patch
- eprefixify runpsipred*
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC) || die "emake failed"
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install || die "installation failed"
- dobin runpsipred* bin/* BLAST+/runpsipred* || die
- insinto /usr/share/${PN}
- doins -r data || die "failed to install data"
- dodoc README || die "nothing to read"
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}