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authorRobin H. Johnson <robbat2@gentoo.org>2015-08-08 13:49:04 -0700
committerRobin H. Johnson <robbat2@gentoo.org>2015-08-08 17:38:18 -0700
commit56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch)
tree3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-chemistry/procheck/files
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proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-chemistry/procheck/files')
-rw-r--r--sci-chemistry/procheck/files/3.5.4-ldflags.patch49
-rw-r--r--sci-chemistry/procheck/files/procheck-3.5.4-close.patch35
2 files changed, 84 insertions, 0 deletions
diff --git a/sci-chemistry/procheck/files/3.5.4-ldflags.patch b/sci-chemistry/procheck/files/3.5.4-ldflags.patch
new file mode 100644
index 00000000000..453aebe3211
--- /dev/null
+++ b/sci-chemistry/procheck/files/3.5.4-ldflags.patch
@@ -0,0 +1,49 @@
+diff --git a/Makefile b/Makefile
+index c5bb58f..0394b0a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -35,31 +35,31 @@ distrib :
+ # Individual executables
+ # ----------------------
+ anglen : anglen.o
+- $(F77) $(FOPTS) -o $@ anglen.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ anglen.o
+ clean : clean.o
+- $(F77) $(FOPTS) -o $@ clean.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ clean.o
+ rmsdev : rmsdev.o
+- $(F77) $(FOPTS) -o $@ rmsdev.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ rmsdev.o
+ secstr : secstr.o
+- $(F77) $(FOPTS) -o $@ secstr.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ secstr.o
+ gfac2pdb : gfac2pdb.o ps.o
+- $(F77) $(FOPTS) -o $@ gfac2pdb.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ gfac2pdb.o ps.o
+ pplot : pplot.o ps.o
+- $(F77) $(FOPTS) -o $@ pplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ pplot.o ps.o
+ bplot : bplot.o ps.o
+- $(F77) $(FOPTS) -o $@ bplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ bplot.o ps.o
+ tplot : tplot.o ps.o
+- $(F77) $(FOPTS) -o $@ tplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ tplot.o ps.o
+ mplot : mplot.o ps.o
+- $(F77) $(FOPTS) -o $@ mplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ mplot.o ps.o
+ vplot : vplot.o ps.o
+- $(F77) $(FOPTS) -o $@ vplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ vplot.o ps.o
+ viol2pdb : viol2pdb.o ps.o
+- $(F77) $(FOPTS) -o $@ viol2pdb.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ viol2pdb.o ps.o
+ wirplot : wirplot.o ps.o
+- $(F77) $(FOPTS) -o $@ wirplot.o ps.o
++ $(F77) $(FOPTS) $(LDFLAGS) -o $@ wirplot.o ps.o
+ nb : nb.c
+- $(CC) $(COPTS) -o nb nb.c $(CLIBS)
++ $(CC) $(COPTS) $(LDFLAGS) -o nb nb.c $(CLIBS)
+
+ # Individual rules for FORTRAN files with .inc files
+ # --------------------------------------------------
diff --git a/sci-chemistry/procheck/files/procheck-3.5.4-close.patch b/sci-chemistry/procheck/files/procheck-3.5.4-close.patch
new file mode 100644
index 00000000000..16a0658e654
--- /dev/null
+++ b/sci-chemistry/procheck/files/procheck-3.5.4-close.patch
@@ -0,0 +1,35 @@
+diff --git a/pplot.f b/pplot.f
+index 7e06e68..c86b2b2 100644
+--- a/pplot.f
++++ b/pplot.f
+@@ -4720,6 +4720,7 @@ C---- Initialise variables
+ SCORE(IDIST) = 0.0
+ 50 CONTINUE
+
++ REWIND(3)
+ C---- If the required residue is of a greater number than that required,
+ C read through the file until come to it
+ IF (IRESID.GT.INRES) THEN
+diff --git a/ps.f b/ps.f
+index b652a7d..858b8e5 100644
+--- a/ps.f
++++ b/ps.f
+@@ -1705,12 +1705,14 @@ CVAX - CARRIAGECONTROL='LIST',
+ C---- If this is an existing file, then read through all its records until
+ C get to the end of file
+ IF (.NOT.NEWFIL) THEN
++ CLOSE(14)
++ OPEN(14, file=fname, status='old', position='append', err=900)
+
+ C---- Loop through the file until reach the end
+- 100 CONTINUE
+- READ(14,110,END=500) IREC
+- 110 FORMAT(A)
+- GO TO 100
++C 100 CONTINUE
++C READ(14,110,END=500) IREC
++C 110 FORMAT(A)
++C GO TO 100
+
+ C---- If this is a new file, then write the header records to it
+ ELSE \ No newline at end of file