summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorJustin Lecher <jlec@gentoo.org>2015-12-29 11:59:01 +0100
committerJustin Lecher <jlec@gentoo.org>2015-12-29 12:00:52 +0100
commit1a15a5bde69114333976660b2c9d7dbb2d1e53e1 (patch)
tree8e2de1387d9c3112ea122bdd2ad39f7906c90a96 /sci-chemistry
parentwww-plugins/adobe-flash: Old. (diff)
downloadgentoo-1a15a5bde69114333976660b2c9d7dbb2d1e53e1.tar.gz
gentoo-1a15a5bde69114333976660b2c9d7dbb2d1e53e1.tar.bz2
gentoo-1a15a5bde69114333976660b2c9d7dbb2d1e53e1.zip
sci-chemistry/avogadro2: Import from science overlay
Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/avogadro2/Manifest2
-rw-r--r--sci-chemistry/avogadro2/avogadro2-0.7.2.ebuild48
-rw-r--r--sci-chemistry/avogadro2/avogadro2-0.8.0.ebuild58
-rw-r--r--sci-chemistry/avogadro2/files/avogadro2-0.8.0-desktop.patch16
-rw-r--r--sci-chemistry/avogadro2/files/avogadro2-0.8.0-vtk.patch142
-rw-r--r--sci-chemistry/avogadro2/metadata.xml15
6 files changed, 281 insertions, 0 deletions
diff --git a/sci-chemistry/avogadro2/Manifest b/sci-chemistry/avogadro2/Manifest
new file mode 100644
index 00000000000..96307cdc6ec
--- /dev/null
+++ b/sci-chemistry/avogadro2/Manifest
@@ -0,0 +1,2 @@
+DIST avogadroapp-0.7.2.tar.gz 523935 SHA256 f29db2f04aea8d9dfa0ab73bfa0c45fba18f45fba968a249f618024e8ab8fe63 SHA512 fb798931b66827b0b0e27295b528483d258e15612dba729219874b6171be3e981bd18337add41eb93613d90653286d8d8aa0dbe5fb11577c5ee22ba25b65443b WHIRLPOOL bce0a6c8e0e10bedb332b68c08935ecaf2abe8fbc53cfb7eb53f206da89014f99e0f9ccd95c2ad6c876bb97090939b0807e0d10c7e62f58ebb3a3cc3254fd2a6
+DIST avogadroapp-0.8.0.tar.gz 1105596 SHA256 d79840f0395c11c2081262ba9c1bc6d944c089bac162b434b94a3080bc90c221 SHA512 cc8c6c1620f603b3ed48a45c13968dc451382d3c3947b743fc65c547d6af92ae1f7f1764ffba84e602a2b54a5be075473e58cb49b8061b9e41b728eadba1a5de WHIRLPOOL dc04714b0f830bf826b5253ceb1738500f48aed5e1c922bd2096d2273c88264bbcf27a796418eec80c4483c5905d6c46e8ad4af22e011ab1b451c70d0c087a38
diff --git a/sci-chemistry/avogadro2/avogadro2-0.7.2.ebuild b/sci-chemistry/avogadro2/avogadro2-0.7.2.ebuild
new file mode 100644
index 00000000000..b3f00f830cf
--- /dev/null
+++ b/sci-chemistry/avogadro2/avogadro2-0.7.2.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils
+
+MY_PN=avogadroapp
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="Advanced molecule editor and visualizer 2"
+HOMEPAGE="http://www.openchemistry.org/"
+SRC_URI="mirror://sourceforge/project/avogadro/avogadro2/${PV}/${MY_P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc rpc test"
+
+RDEPEND="
+ >=dev-cpp/eigen-3.2.0-r1
+ dev-qt/qtcore:4
+ dev-qt/qtgui:4
+ dev-qt/qtopengl:4
+ ~sci-libs/avogadrolibs-${PV}[qt4,opengl]
+ sci-libs/hdf5
+ rpc? ( sci-chemistry/molequeue )
+"
+DEPEND="${DEPEND}"
+
+RESTRICT=test
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+ sed '/COPYING/d' -i CMakeLists.txt || die
+ cmake-utils_src_prepare
+}
+
+src_configure() {
+ local mycmakeargs=(
+ $(cmake-utils_use_build doc DOCUMENTATION)
+ $(cmake-utils_use rpc Avogadro_ENABLE_RPC)
+ $(cmake-utils_use_enable test TESTING)
+ )
+ cmake-utils_src_configure
+}
diff --git a/sci-chemistry/avogadro2/avogadro2-0.8.0.ebuild b/sci-chemistry/avogadro2/avogadro2-0.8.0.ebuild
new file mode 100644
index 00000000000..815f0e0448e
--- /dev/null
+++ b/sci-chemistry/avogadro2/avogadro2-0.8.0.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils
+
+MY_PN=avogadroapp
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="Advanced molecule editor and visualizer 2"
+HOMEPAGE="http://www.openchemistry.org/"
+SRC_URI="mirror://sourceforge/project/avogadro/avogadro2/${PV}/${MY_P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc rpc test vtk"
+
+RDEPEND="
+ dev-qt/qtconcurrent:5
+ dev-qt/qtcore:5
+ dev-qt/qtgui:5
+ dev-qt/qtnetwork:5
+ dev-qt/qtopengl:5
+ dev-qt/qtwidgets:5
+ ~sci-libs/avogadrolibs-${PV}[qt5,opengl]
+ sci-libs/hdf5
+ rpc? ( sci-chemistry/molequeue )
+"
+DEPEND="${DEPEND}
+ >=dev-cpp/eigen-3.2.0-r1
+ test? ( dev-qt/qttest:5 )"
+
+RESTRICT=test
+
+S="${WORKDIR}"/${MY_P}
+
+PATCHES=(
+ "${FILESDIR}"/${P}-desktop.patch
+ "${FILESDIR}"/${P}-vtk.patch
+)
+
+src_prepare() {
+ sed '/COPYING/d' -i CMakeLists.txt || die
+ cmake-utils_src_prepare
+}
+
+src_configure() {
+ local mycmakeargs=(
+ $(cmake-utils_use_build doc DOCUMENTATION)
+ $(cmake-utils_use rpc Avogadro_ENABLE_RPC)
+ $(cmake-utils_use_enable test TESTING)
+ $(cmake-utils_use_use vtk)
+ )
+ cmake-utils_src_configure
+}
diff --git a/sci-chemistry/avogadro2/files/avogadro2-0.8.0-desktop.patch b/sci-chemistry/avogadro2/files/avogadro2-0.8.0-desktop.patch
new file mode 100644
index 00000000000..24738fb5453
--- /dev/null
+++ b/sci-chemistry/avogadro2/files/avogadro2-0.8.0-desktop.patch
@@ -0,0 +1,16 @@
+ avogadro/icons/avogadro2.desktop | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/avogadro/icons/avogadro2.desktop b/avogadro/icons/avogadro2.desktop
+index 940a21b..a88c5fb 100644
+--- a/avogadro/icons/avogadro2.desktop
++++ b/avogadro/icons/avogadro2.desktop
+@@ -6,6 +6,6 @@ Exec=avogadro2 %f
+ Icon=avogadro2
+ Terminal=false
+ Type=Application
+-Categories=Qt;Science;Chemistry;Physics;Education;
++Categories=Qt;Science;Chemistry;Physics;
+ StartupNotify=true
+-MimeType=chemical/x-cml;chemical/x-xyz
++MimeType=chemical/x-cml;chemical/x-xyz;
diff --git a/sci-chemistry/avogadro2/files/avogadro2-0.8.0-vtk.patch b/sci-chemistry/avogadro2/files/avogadro2-0.8.0-vtk.patch
new file mode 100644
index 00000000000..fd872cef013
--- /dev/null
+++ b/sci-chemistry/avogadro2/files/avogadro2-0.8.0-vtk.patch
@@ -0,0 +1,142 @@
+commit 23a9474aad8eba503bcfe54584fd7cad106bda17
+Author: Marcus D. Hanwell <marcus.hanwell@kitware.com>
+Date: Mon Sep 21 12:03:07 2015 -0400
+
+ Made VTK truly optional for Avogadro application
+
+diff --git a/avogadro/CMakeLists.txt b/avogadro/CMakeLists.txt
+index 90534ea..24bdd46 100644
+--- a/avogadro/CMakeLists.txt
++++ b/avogadro/CMakeLists.txt
+@@ -8,6 +8,7 @@ option(USE_VTK "Build with VTK support" OFF)
+ if(USE_VTK)
+ find_package(VTK COMPONENTS vtkGUISupportQt vtkRenderingOpenGL REQUIRED)
+ include(${VTK_USE_FILE})
++ add_definitions(-DAVO_USE_VTK)
+ endif()
+
+ if(MSVC)
+diff --git a/avogadro/mainwindow.cpp b/avogadro/mainwindow.cpp
+index a1c09e8..8fe3038 100644
+--- a/avogadro/mainwindow.cpp
++++ b/avogadro/mainwindow.cpp
+@@ -81,7 +81,9 @@
+ # include <molequeue/client/client.h>
+ #endif // Avogadro_ENABLE_RPC
+
+-#include <avogadro/vtk/vtkglwidget.h>
++#ifdef AVO_USE_VTK
++# include <avogadro/vtk/vtkglwidget.h>
++#endif
+
+ namespace Avogadro {
+
+@@ -198,8 +200,10 @@ using QtGui::ToolPluginFactory;
+ using QtGui::ExtensionPlugin;
+ using QtGui::ExtensionPluginFactory;
+ using QtOpenGL::GLWidget;
+-using VTK::vtkGLWidget;
+ using QtPlugins::PluginManager;
++#ifdef AVO_USE_VTK
++using VTK::vtkGLWidget;
++#endif
+
+ MainWindow::MainWindow(const QStringList &fileNames, bool disableSettings)
+ : m_molecule(NULL),
+@@ -434,9 +438,11 @@ void MainWindow::setMolecule(Molecule *mol)
+ if (GLWidget *glWidget = qobject_cast<QtOpenGL::GLWidget *>(w)) {
+ setWidgetMolecule(glWidget, mol);
+ }
++#ifdef AVO_USE_VTK
+ else if (vtkGLWidget *vtkWidget = qobject_cast<vtkGLWidget *>(w)) {
+ setWidgetMolecule(vtkWidget, mol);
+ }
++#endif
+ }
+
+ void MainWindow::markMoleculeDirty()
+@@ -831,6 +837,7 @@ void MainWindow::viewActivated(QWidget *widget)
+ m_moleculeModel->setActiveMolecule(m_molecule);
+ }
+ }
++#ifdef AVO_USE_VTK
+ else if (vtkGLWidget *vtkWidget = qobject_cast<vtkGLWidget*>(widget)) {
+ bool firstRun = populatePluginModel(vtkWidget->sceneModel());
+ m_sceneTreeView->setModel(&vtkWidget->sceneModel());
+@@ -851,6 +858,7 @@ void MainWindow::viewActivated(QWidget *widget)
+ m_moleculeModel->setActiveMolecule(m_molecule);
+ }
+ }
++#endif
+ updateWindowTitle();
+ activeMoleculeEdited();
+ }
+@@ -1194,14 +1202,18 @@ void MainWindow::setActiveDisplayTypes(QStringList displayTypes)
+ {
+ ScenePluginModel *scenePluginModel(NULL);
+ GLWidget *glWidget(NULL);
++#ifdef AVO_USE_VTK
+ VTK::vtkGLWidget *vtkWidget(NULL);
++#endif
+ if ((glWidget = qobject_cast<GLWidget *>(m_multiViewWidget->activeWidget()))) {
+ scenePluginModel = &glWidget->sceneModel();
+ }
++#ifdef AVO_USE_VTK
+ else if ((vtkWidget =
+ qobject_cast<VTK::vtkGLWidget *>(m_multiViewWidget->activeWidget()))) {
+ scenePluginModel = &vtkWidget->sceneModel();
+ }
++#endif
+
+ foreach (ScenePlugin *scene, scenePluginModel->scenePlugins())
+ scene->setEnabled(false);
+@@ -1211,8 +1223,10 @@ void MainWindow::setActiveDisplayTypes(QStringList displayTypes)
+ scene->setEnabled(true);
+ if (glWidget)
+ glWidget->updateScene();
++#ifdef AVO_USE_VTK
+ else if (vtkWidget)
+ vtkWidget->updateScene();
++#endif
+ }
+
+ void MainWindow::undoEdit()
+diff --git a/avogadro/viewfactory.cpp b/avogadro/viewfactory.cpp
+index 28009be..15c6a44 100644
+--- a/avogadro/viewfactory.cpp
++++ b/avogadro/viewfactory.cpp
+@@ -17,7 +17,9 @@
+ #include "viewfactory.h"
+
+ #include <avogadro/qtopengl/glwidget.h>
+-#include <avogadro/vtk/vtkglwidget.h>
++#ifdef AVO_USE_VTK
++# include <avogadro/vtk/vtkglwidget.h>
++#endif
+
+ namespace Avogadro {
+
+@@ -31,15 +33,22 @@ ViewFactory::~ViewFactory()
+
+ QStringList ViewFactory::views() const
+ {
+- return QStringList() << "3D View" << "VTK";
++ QStringList views;
++ views << "3D View";
++#ifdef AVO_USE_VTK
++ views << "VTK";
++#endif
++ return views;
+ }
+
+ QWidget * ViewFactory::createView(const QString &view)
+ {
+ if (view == "3D View")
+ return new QtOpenGL::GLWidget;
++#ifdef AVO_USE_VTK
+ else if (view == "VTK")
+ return new VTK::vtkGLWidget;
++#endif
+ return NULL;
+ }
+
diff --git a/sci-chemistry/avogadro2/metadata.xml b/sci-chemistry/avogadro2/metadata.xml
new file mode 100644
index 00000000000..0c84b648c0a
--- /dev/null
+++ b/sci-chemistry/avogadro2/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+ <maintainer>
+ <email>jlec@gentoo.org</email>
+ </maintainer>
+ <use>
+ <flag name="rpc">Enable RPC server</flag>
+ <flag name="vtk">include vtk support</flag>
+ </use>
+ <upstream>
+ <remote-id type="sourceforge">avogadro</remote-id>
+ </upstream>
+</pkgmetadata>