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authorAaron Bauman <bman@gentoo.org>2020-07-23 14:36:25 -0400
committerAaron Bauman <bman@gentoo.org>2020-07-23 14:36:25 -0400
commit59207df0adf0358f1b0daf22e483bb860ff79f4f (patch)
tree9a9895b5f1e1ac4988b79b1ffda92098e6571a4c /sci-chemistry
parentapp-emulation/libpod: Bump to version 2.0.3 (diff)
downloadgentoo-59207df0adf0358f1b0daf22e483bb860ff79f4f.tar.gz
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*/*: drop last-rited pkgs
Signed-off-by: Aaron Bauman <bman@gentoo.org>
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/relax/Manifest1
-rw-r--r--sci-chemistry/relax/metadata.xml30
-rw-r--r--sci-chemistry/relax/relax-4.0.0-r4.ebuild83
3 files changed, 0 insertions, 114 deletions
diff --git a/sci-chemistry/relax/Manifest b/sci-chemistry/relax/Manifest
deleted file mode 100644
index 449761ba3ef7..000000000000
--- a/sci-chemistry/relax/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST relax-4.0.0.src.tar.bz2 105659752 BLAKE2B ce5fc9b7f31787f2189e75a543f8ba6fe3cd59ce7382c6c0f79c419b9f71b2d09bd16685e7fed3c9e3205be531efa2a8dc1cce707e77e2386d2a9f7a71b4b0c1 SHA512 28b5ddab2c83f95d7e1a502d05b5d3c93337fece68a1fef95ec8978f61fccf24cb37528cfef27cb20d132033535f4120b23cc76a75f34f52b27df17116351f8e
diff --git a/sci-chemistry/relax/metadata.xml b/sci-chemistry/relax/metadata.xml
deleted file mode 100644
index 00870a633858..000000000000
--- a/sci-chemistry/relax/metadata.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
- The program relax is a software package designed for the study of molecular
- dynamics through the analysis of experimental NMR data. Organic molecules,
- proteins, RNA, DNA, sugars, and other biomolecules are all supported. It
- was originally written for the model-free analysis of protein dynamics,
- though its scope has been significantly expanded.
-
- relax is a community driven project created by NMR spectroscopists for
- NMR spectroscopists. It supports a diverse range of analyses:
-
- Model-free analysis - the Lipari and Szabo model-free analysis of NMR
- relaxation data.
- R1 and R2 - the exponential curve fitting for the calculation of the
- Rx NMR relaxation rates.
- NOE - the calculation of the steady-state NOE NMR relaxation data.
- Consistency testing of multiple field NMR relaxation data.
- RSDM - Reduced Spectral Density Mapping.
- Frame order and N-state model - study of domain motions via the N-state
- model and frame order dynamics theories using anisotropic
- NMR parameters such as RDCs and PCSs.
- Stereochemistry investigations.
- </longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/relax/relax-4.0.0-r4.ebuild b/sci-chemistry/relax/relax-4.0.0-r4.ebuild
deleted file mode 100644
index ba03dbad8454..000000000000
--- a/sci-chemistry/relax/relax-4.0.0-r4.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-WX_GTK_VER="3.0"
-
-inherit eutils multiprocessing python-single-r1 scons-utils toolchain-funcs wxwidgets virtualx
-
-DESCRIPTION="Molecular dynamics by NMR data analysis"
-HOMEPAGE="https://www.nmr-relax.com/"
-SRC_URI="http://download.gna.org/relax/${P}.src.tar.bz2"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- ${PYTHON_DEPS}
- $(python_gen_cond_dep "
- dev-python/Numdifftools[\${PYTHON_MULTI_USEDEP}]
- || (
- dev-python/matplotlib-python2[\${PYTHON_MULTI_USEDEP}]
- dev-python/matplotlib[\${PYTHON_MULTI_USEDEP}]
- )
- || (
- dev-python/numpy-python2[\${PYTHON_MULTI_USEDEP}]
- dev-python/numpy[\${PYTHON_MULTI_USEDEP}]
- )
- dev-python/wxpython:${WX_GTK_VER}[\${PYTHON_MULTI_USEDEP}]
- sci-chemistry/pymol[\${PYTHON_MULTI_USEDEP}]
- >=sci-libs/bmrblib-1.0.3[\${PYTHON_MULTI_USEDEP}]
- >=sci-libs/minfx-1.0.11[\${PYTHON_MULTI_USEDEP}]
- || (
- sci-libs/scipy-python2[\${PYTHON_MULTI_USEDEP}]
- sci-libs/scipy[\${PYTHON_MULTI_USEDEP}]
- )
- ")
- sci-chemistry/molmol
- sci-chemistry/vmd
- sci-visualization/grace
- sci-visualization/opendx
- x11-libs/wxGTK:${WX_GTK_VER}[X]"
-DEPEND="${RDEPEND}
- media-gfx/pngcrush
- test? ( ${RDEPEND} )
- "
-
-pkg_setup() {
- python-single-r1_pkg_setup
-}
-
-src_prepare() {
- rm -rf minfx bmrblib extern/numdifftools || die
- tc-export CC
- need-wxwidgets unicode
-}
-
-src_compile() {
- escons
-}
-
-src_test() {
- VIRTUALX_COMMAND="${EPYTHON} ./${PN}.py -x --traceback"
- virtualmake
-}
-
-src_install() {
- dodoc README docs/{CHANGES,COMMITTERS,JOBS,relax.pdf}
-
- python_moduleinto ${PN}
- python_domodule *
-
- rm ${PN} README || die
-
- make_wrapper ${PN}-nmr "${EPYTHON} $(python_get_sitedir)/${PN}/${PN}.py $@"
-}