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authorDavid Seifert <soap@gentoo.org>2017-02-04 22:02:10 +0100
committerDavid Seifert <soap@gentoo.org>2017-02-04 22:07:13 +0100
commit9d87880e06967309bde9877094080884b7d9c9ec (patch)
treeffac15b35a7eb96f7ba7aa69b9c90f714c01e400 /sci-libs/shogun
parentsci-libs/shogun: Version bump to 5.0.0 (diff)
downloadgentoo-9d87880e06967309bde9877094080884b7d9c9ec.tar.gz
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sci-libs/shogun: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3782
Diffstat (limited to 'sci-libs/shogun')
-rw-r--r--sci-libs/shogun/Manifest1
-rw-r--r--sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch190
-rw-r--r--sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch81
-rw-r--r--sci-libs/shogun/shogun-4.1.0.ebuild129
4 files changed, 0 insertions, 401 deletions
diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest
index b92de5fc771..b827f90ce8d 100644
--- a/sci-libs/shogun/Manifest
+++ b/sci-libs/shogun/Manifest
@@ -1,3 +1,2 @@
-DIST shogun-4.1.0.tar.bz2 2908955 SHA256 0eb313a95606edee046768a4577d63f32f7ccce340bed7bf0ff0d69225567185 SHA512 01950d5186a94735df5331752e1b97a5464015973ddba38a70bc977f9872b3aad02b162ae87919631cce56d1f10b0bea1fa7b463bf959816e5a15a726214f52a WHIRLPOOL 300bd0d887fe8ee4a1ac2aca7f3fbaebd4344dcffe2b20f9b5bb05e83d6973e8a98e54a216d99329c03eea2c02666c557a3c50ff7e11556298d119b8c262f762
DIST shogun-5.0.0.tar.bz2 2448509 SHA256 e82c6a58db9db6624192b018750b0e41f793481791fdc9a6d328bf278d0ae70d SHA512 fa8d9dee4596acce12022540a6927cbdb62e08f8468c8be3790de07ebf3a53055032bcc532b28334ca83284c38f2b0153602634f12bafe4019acb9121b9ff236 WHIRLPOOL 532058c44680909f3717785035c13fb3cf48efec22924101975d80990cb2a9e151814c673ad1a03fa33e363abbaf21fc9edc99d7d25686cc67e907547217bf69
DIST shogun-data-0.9.tar.bz2 287533841 SHA256 691dd37ccc9bdd4f56d6b7a8e061e80567c241219d70210f8148bc4b7b815559 SHA512 ab501640e2db650603899c857866b451fac5c7bbbc7b4ef98559581928869cea49aa326dfca1bb398eee7ebc8843dcc8ee3105c9f462718f1af672aac6b9340a WHIRLPOOL 19aa7a6d84be9ac7d8aaf7fb12747e17e0ba5a7ec8770b83cc1833b07cd1c6c397684a96eb8ebe709d544967ffaf23bcfbeea52dc8ddedf487fcf54a6d2b3ef7
diff --git a/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch b/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch
deleted file mode 100644
index ed57ceca9b9..00000000000
--- a/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch
+++ /dev/null
@@ -1,190 +0,0 @@
-From 57cd0958b153accf12f535ab9406dc8511bf22ec Mon Sep 17 00:00:00 2001
-From: Viktor Gal <viktor.gal@maeth.com>
-Date: Wed, 18 May 2016 06:35:28 +0200
-Subject: [PATCH] Fixing eigen 3.3 related errors
-
-porting fix for #3141 from lisitsyn/tapkee@7c74473d12809e4122527b6e003c74a942d8a25c
-fix #3140: provide a workaround for the eigen bug for calculating log of mapped matrices
----
- src/shogun/lib/tapkee/defines.hpp | 4 +--
- src/shogun/mathematics/eigen3.h | 7 +++++
- .../logdet/opfunc/DenseMatrixExactLog.cpp | 5 ++++
- .../SerialComputationEngine_unittest.cc | 5 ++++
- .../linalg/DenseExactLogJob_unittest.cc | 5 ++++
- .../linalg/RationalApproximation_unittest.cc | 10 ++++++++
- .../linalg/SparseMatrixOperator_unittest.cc | 30 ++++++++++++----------
- 7 files changed, 51 insertions(+), 15 deletions(-)
-
-diff --git a/src/shogun/lib/tapkee/defines.hpp b/src/shogun/lib/tapkee/defines.hpp
-index fd02636..1be45fe 100644
---- a/src/shogun/lib/tapkee/defines.hpp
-+++ b/src/shogun/lib/tapkee/defines.hpp
-@@ -49,12 +49,12 @@ namespace tapkee
- TapkeeOutput(const tapkee::DenseMatrix& e, const tapkee::ProjectingFunction& p) :
- embedding(), projection(p)
- {
-- embedding.swap(e);
-+ embedding = e;
- }
- TapkeeOutput(const TapkeeOutput& that) :
- embedding(), projection(that.projection)
- {
-- this->embedding.swap(that.embedding);
-+ this->embedding = that.embedding;
- }
- tapkee::DenseMatrix embedding;
- tapkee::ProjectingFunction projection;
-diff --git a/src/shogun/mathematics/eigen3.h b/src/shogun/mathematics/eigen3.h
-index 0fb8522..734be6c 100644
---- a/src/shogun/mathematics/eigen3.h
-+++ b/src/shogun/mathematics/eigen3.h
-@@ -61,6 +61,13 @@
-
- #endif //EIGEN_VERSION_AT_LEAST(3,0,93)
-
-+#if ((EIGEN_WORLD_VERSION == 3) && (EIGEN_MAJOR_VERSION == 2) && \
-+ ((EIGEN_MINOR_VERSION == 91) || (EIGEN_MINOR_VERSION == 92)))
-+ // Regression has been introduced to eigen develop (3.3alpha1+):
-+ // http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1229
-+ // until this is not fixed we need to copy the matrix and calculate the log
-+ #define EIGEN_WITH_LOG_BUG_1229 1
-+#endif
- namespace shogun
- {
- template<class T> class SGSparseMatrix;
-diff --git a/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp b/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp
-index a7918e6..1002a6c 100644
---- a/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp
-+++ b/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp
-@@ -62,7 +62,12 @@ void CDenseMatrixExactLog::precompute()
- Map<MatrixXd> mat(m.matrix, m.num_rows, m.num_cols);
- SGMatrix<float64_t> log_m(m.num_rows, m.num_cols);
- Map<MatrixXd> log_mat(log_m.matrix, log_m.num_rows, log_m.num_cols);
-+#if EIGEN_WITH_LOG_BUG_1229
-+ MatrixXd tmp = mat;
-+ log_mat=tmp.log();
-+#else
- log_mat=mat.log();
-+#endif
-
- // the log(C) is also a linear operator here
- // reset the operator of this function with log(C)
-diff --git a/tests/unit/lib/computation/SerialComputationEngine_unittest.cc b/tests/unit/lib/computation/SerialComputationEngine_unittest.cc
-index c41a69a..7f96df1 100644
---- a/tests/unit/lib/computation/SerialComputationEngine_unittest.cc
-+++ b/tests/unit/lib/computation/SerialComputationEngine_unittest.cc
-@@ -40,7 +40,12 @@ TEST(SerialComputationEngine, dense_log_det)
- mat(1,1)=3.0;
- Map<MatrixXd> m(mat.matrix, mat.num_rows, mat.num_cols);
- Map<MatrixXd> log_m(log_mat.matrix, log_mat.num_rows, log_mat.num_cols);
-+#if EIGEN_WITH_LOG_BUG_1229
-+ MatrixXd tmp = m;
-+ log_m=tmp.log();
-+#else
- log_m=m.log();
-+#endif
-
- // create linear operator and aggregator
- CDenseMatrixOperator<float64_t>* log_op=new CDenseMatrixOperator<float64_t>(log_mat);
-diff --git a/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc b/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc
-index a5a12cf..60daf40 100644
---- a/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc
-+++ b/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc
-@@ -38,7 +38,12 @@ TEST(DenseExactLogJob, log_det)
- mat(1,1)=3.0;
- Map<MatrixXd> m(mat.matrix, mat.num_rows, mat.num_cols);
- Map<MatrixXd> log_m(log_mat.matrix, log_mat.num_rows, log_mat.num_cols);
-+#if EIGEN_WITH_LOG_BUG_1229
-+ MatrixXd tmp = m;
-+ log_m=tmp.log();
-+#else
- log_m=m.log();
-+#endif
-
- // create linear operator and aggregator
- CDenseMatrixOperator<float64_t>* log_op=new CDenseMatrixOperator<float64_t>(log_mat);
-diff --git a/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc b/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc
-index f401d06..682ed66 100644
---- a/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc
-+++ b/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc
-@@ -182,7 +182,12 @@ TEST(RationalApproximation, trace_accuracy)
- #if EIGEN_VERSION_AT_LEAST(3,1,0)
- // compute the trace of log(m) using Eigen3 that uses Schur-Parlett algorithm
- Map<MatrixXd> eig_m(m.matrix, m.num_rows, m.num_cols);
-+#if EIGEN_WITH_LOG_BUG_1229
-+ MatrixXd tmp = eig_m;
-+ float64_t trace_log_m=tmp.log().diagonal().sum();
-+#else
- float64_t trace_log_m=eig_m.log().diagonal().sum();
-+#endif
- #else
- float64_t trace_log_m=-11.51292546497021618279;
- #endif // EIGEN_VERSION_AT_LEAST(3,1,0)
-@@ -364,7 +369,12 @@ TEST(RationalApproximation, trace_accuracy_cg_m)
- #if EIGEN_VERSION_AT_LEAST(3,1,0)
- // compute the trace of log(m) using Eigen3 that uses Schur-Parlett algorithm
- Map<MatrixXd> eig_m(m.matrix, m.num_rows, m.num_cols);
-+#if EIGEN_WITH_LOG_BUG_1229
-+ MatrixXd tmp = eig_m;
-+ float64_t trace_log_m=tmp.log().diagonal().sum();
-+#else
- float64_t trace_log_m=eig_m.log().diagonal().sum();
-+#endif
- #else
- float64_t trace_log_m=-11.51292546497021618279;
- #endif // EIGEN_VERSION_AT_LEAST(3,1,0)
-diff --git a/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc b/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc
-index 4d30724..9d171cc 100644
---- a/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc
-+++ b/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc
-@@ -219,33 +219,37 @@ TEST(SparseMatrixOperator, get_set_diagonal_realloc_complex128)
-
- TEST(SparseMatrixOperator, get_sparsity_structure)
- {
-- const int size=9;
-- const int max_pow=10;
-+ const int32_t size=9;
-+ const int32_t max_pow=10;
-
-- SGMatrix<double> m(size, size);
-+ SGMatrix<float64_t> m(size, size);
-
- m.set_const(0.0);
-- for (int i=0; i<size; ++i)
-+ for (int32_t i=0; i<size; ++i)
- m(i,i)=2.0;
-- for (int i=0; i<size; i+=4)
-+ for (int32_t i=0; i<size; i+=4)
- m(i,size-1)=2.0;
-- for (int i=0; i<size; i+=4)
-+ for (int32_t i=0; i<size; i+=4)
- m(size-1,i)=2.0;
-
-- CSparseFeatures<double> feat(m);
-- SGSparseMatrix<double> sm=feat.get_sparse_feature_matrix();
-- CSparseMatrixOperator<double> op(sm);
-+ CSparseFeatures<float64_t> feat(m);
-+ SGSparseMatrix<float64_t> sm=feat.get_sparse_feature_matrix();
-+ CSparseMatrixOperator<float64_t> op(sm);
- CSparseMatrixOperator<bool>* b_op
- =static_cast<CSparseMatrixOperator<bool>*>(op);
-
-- SparseMatrix<bool, RowMajor, int> sp
-+ SparseMatrix<bool, RowMajor, int32_t> sp
- =EigenSparseUtil<bool>::toEigenSparse(b_op->get_matrix_operator());
-- SparseMatrix<double, RowMajor, int> sm2
-- =EigenSparseUtil<double>::toEigenSparse(sm);
-+ SparseMatrix<float64_t, RowMajor, int32_t> sm2
-+ =EigenSparseUtil<float64_t>::toEigenSparse(sm);
-
- // compute direct matrix power and then the sparsity structure
-- for (int i=2; i<=max_pow; ++i)
-+ for (int32_t i=2; i<=max_pow; ++i)
-+#if EIGEN_VERSION_AT_LEAST(3,2,91)
-+ sp=(sp.cast<float64_t>()*sm2).cast<bool>();
-+#else
- sp=sp*sm2;
-+#endif
-
- int32_t* outerIndexPtr=const_cast<int32_t*>(sp.outerIndexPtr());
- int32_t* innerIndexPtr=const_cast<int32_t*>(sp.innerIndexPtr());
diff --git a/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch b/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch
deleted file mode 100644
index e244c94e8e4..00000000000
--- a/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch
+++ /dev/null
@@ -1,81 +0,0 @@
-Remove CFLAGS/CXXFLAGS setting which is not desired in Gentoo
-
---- shogun-4.1.0/cmake/FindAtlas.cmake
-+++ shogun-4.1.0/cmake/FindAtlas.cmake
-@@ -20,10 +20,10 @@
- endif()
- unset(CMAKE_REQUIRED_LIBRARIES CACHE)
- else()
-- find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas)
-- find_library(ATLAS_LAPACK NAMES lapack)
-- set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS})
-- check_library_exists("${ATLAS_LAPACK}" clapack_dpotrf "" FOUND_CLAPACK)
-+ # find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas)
-+ # find_library(ATLAS_LAPACK NAMES lapack)
-+ # set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS})
-+ check_library_exists("${ATLAS_LIBRARIES}" clapack_dpotrf "" FOUND_CLAPACK)
- if(NOT FOUND_CLAPACK)
- unset(ATLAS_LAPACK CACHE)
- endif()
---- shogun-4.1.0/CMakeLists.txt
-+++ shogun-4.1.0/CMakeLists.txt
-@@ -23,15 +23,6 @@
- SET(EIGEN_VERSION_MINIMUM 3.1.2)
- SET(VIENNACL_VERSION_MINIMUM 1.5.0)
-
--# Store system's or distribution's C[XX]FLAGS.
--SET(SYSTEM_C_FLAGS "${CMAKE_C_FLAGS}")
--SET(SYSTEM_CXX_FLAGS "${CMAKE_CXX_FLAGS}")
--STRING(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE_UC)
--IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION"))
-- SET(CMAKE_C_FLAGS "")
-- SET(CMAKE_CXX_FLAGS "")
--ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION"))
--
- # CCACHE
- OPTION(ENABLE_CCACHE "Enable ccache for compilation" ON)
- FIND_PACKAGE(CCache)
-@@ -145,20 +136,8 @@
- SET(COMPILER_WARNINGS "-Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated")
- ENDIF()
-
--IF(CMAKE_COMPILER_IS_GNUCXX)
-- SET(RELEASE_COMPILER_FLAGS "-fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse")
--ELSEIF("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
-- SET(RELEASE_COMPILER_FLAGS "-funroll-loops")
--ENDIF()
--SET(SWIG_CXX_COMPILER_FLAGS "-O0 -g")
- SET(CMAKE_C_FLAGS "${COMPILER_WARNINGS} ${CMAKE_C_FLAGS}")
- SET(CMAKE_CXX_FLAGS "${COMPILER_WARNINGS} ${CMAKE_CXX_FLAGS}")
--SET(CMAKE_C_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}")
--SET(CMAKE_CXX_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}")
--SET(CMAKE_C_FLAGS_DISTRIBUTION "-O2")
--SET(CMAKE_CXX_FLAGS_DISTRIBUTION "-O2")
--SET(CMAKE_C_FLAGS_DEBUG "-g")
--SET(CMAKE_CXX_FLAGS_DEBUG "-g")
-
- OPTION(ENABLE_COVERAGE "Enable code coverage" OFF)
- IF(ENABLE_COVERAGE)
-@@ -881,21 +860,7 @@
- OPTION(USE_SWIG_DIRECTORS "Enable SWIG director classes" OFF)
-
- # Respect system's or distribution's C[XX]FLAGS.
--OPTION(SWIG_WITH_SYSTEM_CFLAGS "Enable system's C[XX]FLAGS for compilation of swig-binaries" ON)
--
--IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION"))
-- SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${SYSTEM_C_FLAGS}")
-- SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SYSTEM_CXX_FLAGS}")
--ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION"))
--
--IF(SWIG_WITH_SYSTEM_CFLAGS)
-- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} ${SYSTEM_CXX_FLAGS}")
--ENDIF(SWIG_WITH_SYSTEM_CFLAGS)
--
--OPTION(REDUCE_SWIG_DEBUG "Reduce debuginfo when compiling interfaces" OFF)
--IF(REDUCE_SWIG_DEBUG)
-- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} -g1")
--ENDIF(REDUCE_SWIG_DEBUG)
-+SET(SWIG_CXX_COMPILER_FLAGS "${CMAKE_CXX_FLAGS}")
-
- # python modular
- IF (PythonModular OR PythonStatic)
diff --git a/sci-libs/shogun/shogun-4.1.0.ebuild b/sci-libs/shogun/shogun-4.1.0.ebuild
deleted file mode 100644
index 3f31f9d833c..00000000000
--- a/sci-libs/shogun/shogun-4.1.0.ebuild
+++ /dev/null
@@ -1,129 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python3_{4,5} )
-
-inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator
-
-MYPV=$(get_version_component_range 1-2)
-MYPD=${PN}-data-0.9
-
-DESCRIPTION="Large Scale Machine Learning Toolbox"
-HOMEPAGE="http://shogun-toolbox.org/"
-SRC_URI="
- ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
- test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )
- examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
-
-LICENSE="GPL-3 free-noncomm"
-SLOT="0/16"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples lua mono octave python R ruby static-libs test"
-
-REQUIRED_USE="
- python? ( ${PYTHON_REQUIRED_USE} )
- test? ( python )"
-
-RDEPEND="
- app-arch/bzip2:=
- app-arch/gzip:=
- app-arch/lzma:=
- app-arch/snappy:=
- dev-libs/lzo:=
- >=dev-cpp/eigen-3.1
- dev-libs/json-c:=
- dev-libs/libxml2:=
- dev-libs/protobuf:=
- net-misc/curl:=
- sci-libs/arpack:=
- sci-libs/arprec:=
- sci-libs/colpack:=
- sci-libs/hdf5:=
- sci-libs/nlopt:=
- sci-mathematics/glpk:=
- sci-mathematics/lpsolve:=
- sys-libs/readline:0
- sys-libs/zlib:=
- virtual/blas
- virtual/cblas
- virtual/lapack
- lua? ( dev-lang/lua:0 )
- mono? ( dev-lang/mono )
- octave? ( <sci-mathematics/octave-3.8.0[hdf5] )
- python? ( dev-python/numpy[${PYTHON_USEDEP}] )
- R? ( dev-lang/R )
- ruby? ( dev-ruby/narray )"
-
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- doc? ( app-doc/doxygen[dot] )
- lua? ( >=dev-lang/swig-2.0.4 )
- mono? ( >=dev-lang/swig-2.0.4 )
- octave? ( >=dev-lang/swig-2.0.4 )
- python? ( >=dev-lang/swig-2.0.4 test? ( sci-libs/scipy ) )
- R? ( >=dev-lang/swig-2.0.4 )
- ruby? ( >=dev-lang/swig-2.0.4 )
- test? (
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-cpp/gmock
- )"
-
-# javamodular needs jblas (painful to package properly)
-# permodular work in progress (as 3.2.0)
-# could actually support multiple pythons, multiple rubys
-# feel free to do work for it
-
-PATCHES=(
- "${FILESDIR}"/${P}-fix-buildsystem.patch
- "${FILESDIR}"/${P}-remove-C-linkage.patch
- "${FILESDIR}"/${P}-eigen-3.3.patch
-)
-
-pkg_setup() {
- use python && python-single-r1_pkg_setup
-}
-
-src_configure() {
- export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)"
- export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)"
- export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)"
- export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- append-cppflags "$($(tc-getPKG_CONFIG) --cflags cblas)"
-
- local mycmakeargs=(
- -DCMAKE_SKIP_INSTALL_RPATH=ON
- -DCMAKE_SKIP_RPATH=ON
- -DBUNDLE_ARPREC=OFF
- -DBUNDLE_COLPACK=OFF
- -DBUNDLE_EIGEN=OFF
- -DBUNDLE_JSON=OFF
- -DBUNDLE_NLOPT=OFF
- -DENABLE_COVERAGE=OFF
- -DJavaModular=OFF
- -DPerlModular=OFF
- -DLIB_INSTALL_DIR=$(get_libdir)
- -DLuaModular="$(usex lua)"
- -DCSharpModular="$(usex mono)"
- -DOctaveModular="$(usex octave)"
- -DOctaveStatic="$(usex octave)"
- -DPythonModular="$(usex python)"
- -DPythonStatic="$(usex python)"
- -DRModular="$(usex R)"
- -DRStatic="$(usex R)"
- -DRubyModular="$(usex ruby)"
- -DENABLE_TESTING="$(usex test)"
- -DBUILD_EXAMPLES="$(usex examples)"
- )
- cmake-utils_src_configure
- # gentoo bug #302621
- has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
-}
-
-src_compile() {
- cmake-utils_src_compile
- use doc && emake -C "${BUILD_DIR}"/doc
-}