summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorMichał Górny <mgorny@gentoo.org>2020-09-18 12:07:08 +0200
committerMichał Górny <mgorny@gentoo.org>2020-09-18 12:08:06 +0200
commit51a7be728639841f69b134f8acebeaa0fd3e4fe9 (patch)
tree15ae2cb3b1eb74c172093475792509c0168a6e0b /sci-libs
parentapp-eselect/eselect-python: amd64/arm64/arm/hppa/ppc64/ppc/s390/sparc/x86 sta... (diff)
downloadgentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.tar.gz
gentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.tar.bz2
gentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.zip
Move {sci-libs → dev-python}/scipy
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/cartopy/cartopy-0.18.0.ebuild2
-rw-r--r--sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild2
-rw-r--r--sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild2
-rw-r--r--sci-libs/numkit/numkit-1.1.2.ebuild2
-rw-r--r--sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild2
-rw-r--r--sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild4
-rw-r--r--sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild4
-rw-r--r--sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild4
-rw-r--r--sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild2
-rw-r--r--sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild2
-rw-r--r--sci-libs/scipy/Manifest15
-rw-r--r--sci-libs/scipy/metadata.xml27
-rw-r--r--sci-libs/scipy/scipy-1.1.0.ebuild148
-rw-r--r--sci-libs/scipy/scipy-1.4.1.ebuild154
-rw-r--r--sci-libs/scipy/scipy-1.5.0.ebuild154
-rw-r--r--sci-libs/scipy/scipy-1.5.1.ebuild154
-rw-r--r--sci-libs/scipy/scipy-1.5.2.ebuild160
-rw-r--r--sci-libs/shogun/shogun-5.0.0-r1.ebuild2
18 files changed, 14 insertions, 826 deletions
diff --git a/sci-libs/cartopy/cartopy-0.18.0.ebuild b/sci-libs/cartopy/cartopy-0.18.0.ebuild
index 2fb1a4020f2..bc9c5426b8f 100644
--- a/sci-libs/cartopy/cartopy-0.18.0.ebuild
+++ b/sci-libs/cartopy/cartopy-0.18.0.ebuild
@@ -27,7 +27,7 @@ RDEPEND="
sci-libs/Shapely[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
dev-python/pillow[jpeg,${PYTHON_USEDEP}]
sci-libs/gdal[python,${PYTHON_USEDEP}]
"
diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild
index 58c165ae501..c0bf90c60e2 100644
--- a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild
+++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild
@@ -16,7 +16,7 @@ KEYWORDS="amd64 x86"
IUSE=""
RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}
dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild
index 58c165ae501..c0bf90c60e2 100644
--- a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild
+++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild
@@ -16,7 +16,7 @@ KEYWORDS="amd64 x86"
IUSE=""
RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}
dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/numkit/numkit-1.1.2.ebuild b/sci-libs/numkit/numkit-1.1.2.ebuild
index 8fb64e296e6..60e7576d3c8 100644
--- a/sci-libs/numkit/numkit-1.1.2.ebuild
+++ b/sci-libs/numkit/numkit-1.1.2.ebuild
@@ -29,5 +29,5 @@ IUSE=""
BDEPEND="
dev-python/six[${PYTHON_USEDEP}]
>=dev-python/numpy-1.9[${PYTHON_USEDEP}]
- >=sci-libs/scipy-1.0[${PYTHON_USEDEP}]"
+ >=dev-python/scipy-1.0[${PYTHON_USEDEP}]"
RDEPEND="${DEPEND}"
diff --git a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild b/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild
index 875c4e86fa4..6764d75ad7c 100644
--- a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild
+++ b/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild
@@ -27,7 +27,7 @@ RDEPEND="
dev-python/pillow[${PYTHON_USEDEP}]
dev-python/pywavelets[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]
- sci-libs/scipy[sparse,${PYTHON_USEDEP}]
+ dev-python/scipy[sparse,${PYTHON_USEDEP}]
freeimage? ( media-libs/freeimage )
pyamg? ( dev-python/pyamg[${PYTHON_USEDEP}] )"
DEPEND="${RDEPEND}
diff --git a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild
index 467c2124494..87abf6b9c1e 100644
--- a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild
+++ b/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild
@@ -28,7 +28,7 @@ RDEPEND="
dev-python/nose[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
sci-libs/scikits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
@@ -37,7 +37,7 @@ DEPEND="
dev-python/cython[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild
index fc65c21b1d4..72823168329 100644
--- a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild
+++ b/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild
@@ -29,7 +29,7 @@ RDEPEND="
dev-python/nose[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
sci-libs/scikits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
@@ -38,7 +38,7 @@ DEPEND="
dev-python/cython[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild
index fc65c21b1d4..72823168329 100644
--- a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild
+++ b/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild
@@ -29,7 +29,7 @@ RDEPEND="
dev-python/nose[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
sci-libs/scikits[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
@@ -38,7 +38,7 @@ DEPEND="
dev-python/cython[${PYTHON_USEDEP}]
dev-python/numpy[lapack,${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
"
diff --git a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild
index 1c4068d298c..b60be666ce0 100644
--- a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild
+++ b/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild
@@ -25,7 +25,7 @@ RDEPEND="
dev-python/wheel[${PYTHON_USEDEP}]
dev-python/cython[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
sci-libs/scikits[${PYTHON_USEDEP}]
virtual/blas:=
virtual/cblas:=
diff --git a/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild b/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild
index b1dd82b3629..0b7cea51568 100644
--- a/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild
+++ b/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild
@@ -25,7 +25,7 @@ DEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )"
RDEPEND="
- sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
sci-libs/scikits[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/pytables[${PYTHON_USEDEP}]"
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
deleted file mode 100644
index 9ed4593e3fc..00000000000
--- a/sci-libs/scipy/Manifest
+++ /dev/null
@@ -1,15 +0,0 @@
-DIST scipy-1.1.0-html.zip 49851258 BLAKE2B 528df7ed8aa8e56662f436f31ee9e1d6d72d6fe962f9f0f6f84b7a2704b53009ce333b2102ec73bb7795110f8a61b18246aab95b1e21055f2b68c0ff2225b7bb SHA512 a03894a22a67c1359ee6206e9e1c9de1f926a7f829f5039f161e78df735708da09b0e51cdad3bf36bfede701d0bc5dc44f8cc0f249b6bfb80c9d8c9fe23aed46
-DIST scipy-1.1.0-ref.pdf 34360806 BLAKE2B f82807879d5d36d91d74e8983a0f4104bcb4b69cb7787fe5190f73fbbfcb8635a9399686b3c75736d3b0b5dd877b5280ff6fba728520e3b47c13ffc7835f8cd6 SHA512 c792064c986dffafa3c5d0741f30715028e655761d099f0fdd472270cf34642b367dfa2178ddceba13043a471e3aeb1db20d65308dbb40c704dab576aaadeb3e
-DIST scipy-1.1.0.tar.gz 15583560 BLAKE2B 477753e622ee26a3bc8c2cb6829410152df84b29ce17a6d53a66348f5536f7993fedf5d32b782405b54b3af3feabf9bc91c381ed39546076849c2fdb71039404 SHA512 72fe32c6c009613cb78202598e5db14f8e630b3218839cfe18d43d40550d94cc5aa100c6f5d41f40e86ae148e9b6a13431bb91b0f9be44b0569ccd7b725fe973
-DIST scipy-1.4.1-html.zip 61414053 BLAKE2B e1f0c1a7a8941958512dcc3c0f40ef4a590bab0b44b33f842bc6e1c5d103c17f223d8b0a2f4e564f57645d601d4d74005c1ec605be2dd3bf4db19d2ac1f614d1 SHA512 9eeae83cd723d63aa1dc7a610ce3118cb68a2336be24cbfeaa8e57b34de413b2efa2fdad0978eb5bdac0ebca6b15f564b9509637efbd87d1007c969ae954e3ae
-DIST scipy-1.4.1-ref.pdf 41100747 BLAKE2B 8e56af69d0bffbe6eff73bfc5bb674aed3b80bdd80d59b58a1835f996c992306a059c2992d74c411e762490c526262753d33273613ed389928845c65eb6546b2 SHA512 76946f3b506fe22a595b70e5a418982257dd59db1a2e9af508cc1cab59d47ba4fc5951388e676f2a513043a6b3391ef853242e78d7feb99a6c21d19f6dca2b58
-DIST scipy-1.4.1.tar.gz 24555206 BLAKE2B e35f6234404839cbd24d463c8cc2f1ea66aed91534e700fd54a623df40d069b14fc220f96af04c78d13b773bfc5461559e59b0bd9b836d7953f9249ccd7cae54 SHA512 79407a2cbb4ba29c0941570181df4d7835e5791e50a3abef9b63c2fc5b15308a2e4964eb71cdebbee8cd2dcb8e497cf92fe50ee21fb12cac3013ea5e0466b25d
-DIST scipy-1.5.0-html.zip 23579592 BLAKE2B 6e35a881967d38db67278d6990fbb1912238bca05c7064585aaaf849861371680c2cd5d3e9a150301c29984aa12db0eeebf5f23cb7d2a438edb28fed9654ac79 SHA512 a1dcf9c2d003b1f722a216c8bf0fda7022765c01505343e86da64ec9a4dbda4eb7da74ad09147e5b79e610f090740d19bda6017d6f894f2566547a42e8aa97b3
-DIST scipy-1.5.0-ref.pdf 33694300 BLAKE2B a7701cdfd8f6da71b59efcefca5c080426b175976429cb64d47f05f42795fea3abb6764c2e2d1807f215c9e00ccd5b2de254f1c68269b266492dfaf76f887972 SHA512 3208ab84421fbec0597931c6050666e9da7d21c6e73a685f084e9570a39539e9c2e5f7fbdfe27951b2ba8e51a1bc42b06ddd6c906a6a13c81a34a16dc0672dda
-DIST scipy-1.5.0.tar.gz 25573194 BLAKE2B f505e5f0627687aeefe0af0886b03eead9f6426f17bca21a3f73cc0d4957ac574e0123b86424ccf0d5f8f4a963b707a1443ddcd6e149f2a4e747daa55b1be95c SHA512 4c981a3125a88593cbc5a17417022a5db8f6ccb4c1c24e78afeb9bb26428b81d2d0fe9965caa418753b1bbbda2fa30533fa1307aac6ab168458d68f7b46049be
-DIST scipy-1.5.1-html.zip 23582280 BLAKE2B 97b256bc7367836f35ce7e0ac47436dd72c1afe249dea1a2f437ea883e74ecb8f5bbe22e20bb804aac66b86fb35e8b4f0e329c44d9d601318ef1accc82e8e850 SHA512 eb0c7736d2bdc9f45926d19f4a22e1168d0f06e21b338cd7e7884af79c7634885350c510251d4cd1629b2a294003e93f8e71bafd8ec64c1aea4d4174c3946597
-DIST scipy-1.5.1-ref.pdf 33698325 BLAKE2B 6ff0d13474acf2960352580765c86ef54faa9bb616b4b8097665fa3b8a3a6033acb524d5bb76757b23d0ea9550b556293509a91e5cbeb7b0a388ea75d1bec29b SHA512 c0fbebb5dec19aebe7783507ccebf28134227096caad915e1f28f963386a07b1246fa624e4680691809c5ba31a09d3dd6e4f27f9e86f5985f8a7eecb1eea82d3
-DIST scipy-1.5.1.tar.gz 25575560 BLAKE2B e431a54f1810590b75d0f115bdbcd3c561d0d918664d91654fa4f2583d4d2807deae36b3293be0a5add650fb5d99f744e1d893d369f6053741d863e2826dcc3c SHA512 d46abaaa52e5521d8f3f6d79f58c8473a8649faa01e93d250d2ee19d5778e31c13aaa855bd8f059ddc1424ae13001f15a41f240fa6b0acf3ffd911ea30da1040
-DIST scipy-1.5.2-html.zip 23166876 BLAKE2B a90d6a2eb25c56147c0c1cccb58cddd230c20cd70dcc5c39b7307acaeac5320ff1c6ed46e3027ec40f604db503a90620cf87212e45f3158c667ec20d95bac649 SHA512 35c675821675844b163eacdaf448173edb78adb5e9f3e438a70809b8b59425a987fd3ed7d6f7863612111ece4a6a36504279ef4492166f5e24a9b2c7ea9d21e7
-DIST scipy-1.5.2-ref.pdf 33462200 BLAKE2B 5784612eb41221a02520778d72341702a7dd4ee8c0147592e170054107219b03af4ccebe1f5e2a57f90f3b892455f95ec45d8eac8e4a7155e21e9ae0526b302f SHA512 15961b7280eb903d2db7a05915b94b3c298cabf68a6694da217680e23fe621885dd169dc88a033ee001a89bc6e6b13ef787ec61009f6ffe38aeaa2dfb84f8a47
-DIST scipy-1.5.2.tar.gz 25423944 BLAKE2B 0a4987da0cde4f33bbb0e2be571b59e9064b1c6554c61c1655100abdecfde54d64845cd30c5b3fcac3ae7426572757aa9a66065dd3b48e6e4cdd4d0ea847868e SHA512 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923
diff --git a/sci-libs/scipy/metadata.xml b/sci-libs/scipy/metadata.xml
deleted file mode 100644
index f1d093c366a..00000000000
--- a/sci-libs/scipy/metadata.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <maintainer type="project">
- <email>python@gentoo.org</email>
- <name>Python</name>
- </maintainer>
- <longdescription lang="en">
- SciPy is an open source library of scientific tools for Python. SciPy
- supplements the popular numpy module, gathering a variety of high level
- science and engineering modules together as a single package.
- SciPy includes modules for graphics and plotting, optimization,
- integration, special functions, signal and image processing, genetic
- algorithms, ODE solvers, and others.
-</longdescription>
- <use>
- <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
- </use>
- <upstream>
- <remote-id type="pypi">scipy</remote-id>
- <remote-id type="sourceforge">scipy</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-libs/scipy/scipy-1.1.0.ebuild b/sci-libs/scipy/scipy-1.1.0.ebuild
deleted file mode 100644
index 119210dc4f0..00000000000
--- a/sci-libs/scipy/scipy-1.1.0.ebuild
+++ /dev/null
@@ -1,148 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{6,7} )
-PYTHON_REQ_USE="threads(+)"
-
-DOC_PV=${PV}
-
-inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="https://www.scipy.org/"
-SRC_URI="
- mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
- )"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc sparse test"
-RESTRICT="!test? ( test )"
-KEYWORDS="amd64 ~arm ~arm64 ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-
-CDEPEND="
- >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:0=
- virtual/cblas
- virtual/lapack
- sparse? ( sci-libs/umfpack:0= )"
-DEPEND="${CDEPEND}
- dev-lang/swig
- >=dev-python/cython-0.22[${PYTHON_USEDEP}]
- >=dev-python/setuptools-36[${PYTHON_USEDEP}]
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )"
-RDEPEND="${CDEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt THANKS.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
- default
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
- fi
-}
-
-pc_incdir() {
- $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
- sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libdir() {
- $(tc-getPKG_CONFIG) --libs-only-L $@ | \
- sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libs() {
- $(tc-getPKG_CONFIG) --libs-only-l $@ | \
- sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
- -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
- | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
-}
-
-python_prepare_all() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use sparse && unset UMFPACK
- # the missing symbols are in -lpythonX.Y, but since the version can
- # differ, we just introduce the same scaryness as on Linux/ELF
- [[ ${CHOST} == *-darwin* ]] \
- && append-ldflags -bundle "-undefined dynamic_lookup" \
- || append-ldflags -shared
- [[ -z ${FC} ]] && export FC="$(tc-getFC)"
- # hack to force F77 to be FC until bug #278772 is fixed
- [[ -z ${F77} ]] && export F77="$(tc-getFC)"
- export F90="${FC}"
- export SCIPY_FCONFIG="config_fc --noopt --noarch"
- append-fflags -fPIC
-
- local libdir="${EPREFIX}"/usr/$(get_libdir)
- cat >> site.cfg <<-EOF || die
- [blas]
- include_dirs = $(pc_incdir cblas)
- library_dirs = $(pc_libdir cblas blas):${libdir}
- blas_libs = $(pc_libs cblas blas)
- [lapack]
- library_dirs = $(pc_libdir lapack):${libdir}
- lapack_libs = $(pc_libs lapack)
- EOF
-
- # Drop hashes to force rebuild of cython based .c code
- rm cythonize.dat || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- # bug 721860
- test-flag-FC -fallow-argument-mismatch &&
- append-fflags -fallow-argument-mismatch
-}
-
-python_compile() {
- # FIXME: parallel python building fails, bug #614464
- ${EPYTHON} tools/cythonize.py || die
- distutils-r1_python_compile \
- ${SCIPY_FCONFIG}
-}
-
-python_test() {
- # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
- distutils_install_for_testing ${SCIPY_FCONFIG}
- cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
- "${PYTHON}" -c \
- 'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \
- || die
- "${EPYTHON}" -c \
- "import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \
- || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
- use doc && \
- local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
- local HTML_DOCS=( "${WORKDIR}"/html/. )
- distutils-r1_python_install_all
-}
-
-python_install() {
- distutils-r1_python_install ${SCIPY_FCONFIG}
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer. Example:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-1.4.1.ebuild b/sci-libs/scipy/scipy-1.4.1.ebuild
deleted file mode 100644
index 90fb741b4d7..00000000000
--- a/sci-libs/scipy/scipy-1.4.1.ebuild
+++ /dev/null
@@ -1,154 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{6..9} )
-PYTHON_REQ_USE="threads(+)"
-
-DOC_PV=${PV}
-
-inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="https://www.scipy.org/"
-SRC_URI="
- mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
- )"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~arm ~arm64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-IUSE="doc sparse test"
-RESTRICT="!test? ( test )"
-
-CDEPEND="
- >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:0=
- virtual/cblas
- virtual/lapack
- sparse? ( sci-libs/umfpack:0= )"
-DEPEND="${CDEPEND}
- dev-lang/swig
- >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
- >=dev-python/setuptools-36[${PYTHON_USEDEP}]
- dev-python/pybind11[${PYTHON_USEDEP}]
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )"
-RDEPEND="${CDEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt THANKS.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
- default
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
- fi
-}
-
-pc_incdir() {
- $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
- sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libdir() {
- $(tc-getPKG_CONFIG) --libs-only-L $@ | \
- sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libs() {
- $(tc-getPKG_CONFIG) --libs-only-l $@ | \
- sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
- -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
- | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
-}
-
-python_prepare_all() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use sparse && unset UMFPACK
- # the missing symbols are in -lpythonX.Y, but since the version can
- # differ, we just introduce the same scaryness as on Linux/ELF
- [[ ${CHOST} == *-darwin* ]] \
- && append-ldflags -bundle "-undefined dynamic_lookup" \
- || append-ldflags -shared
- [[ -z ${FC} ]] && export FC="$(tc-getFC)"
- # hack to force F77 to be FC until bug #278772 is fixed
- [[ -z ${F77} ]] && export F77="$(tc-getFC)"
- export F90="${FC}"
- export SCIPY_FCONFIG="config_fc --noopt --noarch"
- append-fflags -fPIC
-
- local libdir="${EPREFIX}"/usr/$(get_libdir)
- cat >> site.cfg <<-EOF || die
- [blas]
- include_dirs = $(pc_incdir cblas)
- library_dirs = $(pc_libdir cblas blas):${libdir}
- blas_libs = $(pc_libs cblas blas)
- [lapack]
- library_dirs = $(pc_libdir lapack):${libdir}
- lapack_libs = $(pc_libs lapack)
- EOF
- cat >> setup.cfg <<-EOF || die
- [options]
- zip_safe = False
- EOF
-
- # Drop hashes to force rebuild of cython based .c code
- rm cythonize.dat || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- # bug 721860
- test-flag-FC -fallow-argument-mismatch &&
- append-fflags -fallow-argument-mismatch
-}
-
-python_compile() {
- # FIXME: parallel python building fails, bug #614464
- export MAKEOPTS=-j1
-
- ${EPYTHON} tools/cythonize.py || die
- distutils-r1_python_compile \
- ${SCIPY_FCONFIG}
-}
-
-python_test() {
- # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
- distutils_install_for_testing ${SCIPY_FCONFIG}
- cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
- PYTHONPATH=. "${EPYTHON}" -c "
-import scipy, sys
-r = scipy.test('fast', verbose=2)
-sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
- use doc && \
- local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
- local HTML_DOCS=( "${WORKDIR}"/html/. )
- distutils-r1_python_install_all
-}
-
-python_install() {
- distutils-r1_python_install ${SCIPY_FCONFIG}
- python_optimize
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer. Example:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-1.5.0.ebuild b/sci-libs/scipy/scipy-1.5.0.ebuild
deleted file mode 100644
index 21948a8eb2c..00000000000
--- a/sci-libs/scipy/scipy-1.5.0.ebuild
+++ /dev/null
@@ -1,154 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{6..9} )
-PYTHON_REQ_USE="threads(+)"
-
-DOC_PV=${PV}
-
-inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="https://www.scipy.org/"
-SRC_URI="
- mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
- )"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-IUSE="doc sparse test"
-RESTRICT="!test? ( test )"
-
-CDEPEND="
- >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:0=
- virtual/cblas
- virtual/lapack
- sparse? ( sci-libs/umfpack:0= )"
-DEPEND="${CDEPEND}
- dev-lang/swig
- >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
- >=dev-python/setuptools-36[${PYTHON_USEDEP}]
- dev-python/pybind11[${PYTHON_USEDEP}]
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )"
-RDEPEND="${CDEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt THANKS.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
- default
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
- fi
-}
-
-pc_incdir() {
- $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
- sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libdir() {
- $(tc-getPKG_CONFIG) --libs-only-L $@ | \
- sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libs() {
- $(tc-getPKG_CONFIG) --libs-only-l $@ | \
- sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
- -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
- | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
-}
-
-python_prepare_all() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use sparse && unset UMFPACK
- # the missing symbols are in -lpythonX.Y, but since the version can
- # differ, we just introduce the same scaryness as on Linux/ELF
- [[ ${CHOST} == *-darwin* ]] \
- && append-ldflags -bundle "-undefined dynamic_lookup" \
- || append-ldflags -shared
- [[ -z ${FC} ]] && export FC="$(tc-getFC)"
- # hack to force F77 to be FC until bug #278772 is fixed
- [[ -z ${F77} ]] && export F77="$(tc-getFC)"
- export F90="${FC}"
- export SCIPY_FCONFIG="config_fc --noopt --noarch"
- append-fflags -fPIC
-
- local libdir="${EPREFIX}"/usr/$(get_libdir)
- cat >> site.cfg <<-EOF || die
- [blas]
- include_dirs = $(pc_incdir cblas)
- library_dirs = $(pc_libdir cblas blas):${libdir}
- blas_libs = $(pc_libs cblas blas)
- [lapack]
- library_dirs = $(pc_libdir lapack):${libdir}
- lapack_libs = $(pc_libs lapack)
- EOF
- cat >> setup.cfg <<-EOF || die
- [options]
- zip_safe = False
- EOF
-
- # Drop hashes to force rebuild of cython based .c code
- rm cythonize.dat || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- # bug 721860
- test-flag-FC -fallow-argument-mismatch &&
- append-fflags -fallow-argument-mismatch
-}
-
-python_compile() {
- # FIXME: parallel python building fails, bug #614464
- export MAKEOPTS=-j1
-
- ${EPYTHON} tools/cythonize.py || die
- distutils-r1_python_compile \
- ${SCIPY_FCONFIG}
-}
-
-python_test() {
- # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
- distutils_install_for_testing ${SCIPY_FCONFIG}
- cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
- PYTHONPATH=. "${EPYTHON}" -c "
-import scipy, sys
-r = scipy.test('fast', verbose=2)
-sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
- use doc && \
- local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
- local HTML_DOCS=( "${WORKDIR}"/html/. )
- distutils-r1_python_install_all
-}
-
-python_install() {
- distutils-r1_python_install ${SCIPY_FCONFIG}
- python_optimize
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer. Example:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-1.5.1.ebuild b/sci-libs/scipy/scipy-1.5.1.ebuild
deleted file mode 100644
index 21948a8eb2c..00000000000
--- a/sci-libs/scipy/scipy-1.5.1.ebuild
+++ /dev/null
@@ -1,154 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{6..9} )
-PYTHON_REQ_USE="threads(+)"
-
-DOC_PV=${PV}
-
-inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="https://www.scipy.org/"
-SRC_URI="
- mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
- )"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-IUSE="doc sparse test"
-RESTRICT="!test? ( test )"
-
-CDEPEND="
- >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:0=
- virtual/cblas
- virtual/lapack
- sparse? ( sci-libs/umfpack:0= )"
-DEPEND="${CDEPEND}
- dev-lang/swig
- >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
- >=dev-python/setuptools-36[${PYTHON_USEDEP}]
- dev-python/pybind11[${PYTHON_USEDEP}]
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )"
-RDEPEND="${CDEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt THANKS.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
- default
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
- fi
-}
-
-pc_incdir() {
- $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
- sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libdir() {
- $(tc-getPKG_CONFIG) --libs-only-L $@ | \
- sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libs() {
- $(tc-getPKG_CONFIG) --libs-only-l $@ | \
- sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
- -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
- | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
-}
-
-python_prepare_all() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use sparse && unset UMFPACK
- # the missing symbols are in -lpythonX.Y, but since the version can
- # differ, we just introduce the same scaryness as on Linux/ELF
- [[ ${CHOST} == *-darwin* ]] \
- && append-ldflags -bundle "-undefined dynamic_lookup" \
- || append-ldflags -shared
- [[ -z ${FC} ]] && export FC="$(tc-getFC)"
- # hack to force F77 to be FC until bug #278772 is fixed
- [[ -z ${F77} ]] && export F77="$(tc-getFC)"
- export F90="${FC}"
- export SCIPY_FCONFIG="config_fc --noopt --noarch"
- append-fflags -fPIC
-
- local libdir="${EPREFIX}"/usr/$(get_libdir)
- cat >> site.cfg <<-EOF || die
- [blas]
- include_dirs = $(pc_incdir cblas)
- library_dirs = $(pc_libdir cblas blas):${libdir}
- blas_libs = $(pc_libs cblas blas)
- [lapack]
- library_dirs = $(pc_libdir lapack):${libdir}
- lapack_libs = $(pc_libs lapack)
- EOF
- cat >> setup.cfg <<-EOF || die
- [options]
- zip_safe = False
- EOF
-
- # Drop hashes to force rebuild of cython based .c code
- rm cythonize.dat || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- # bug 721860
- test-flag-FC -fallow-argument-mismatch &&
- append-fflags -fallow-argument-mismatch
-}
-
-python_compile() {
- # FIXME: parallel python building fails, bug #614464
- export MAKEOPTS=-j1
-
- ${EPYTHON} tools/cythonize.py || die
- distutils-r1_python_compile \
- ${SCIPY_FCONFIG}
-}
-
-python_test() {
- # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
- distutils_install_for_testing ${SCIPY_FCONFIG}
- cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
- PYTHONPATH=. "${EPYTHON}" -c "
-import scipy, sys
-r = scipy.test('fast', verbose=2)
-sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
- use doc && \
- local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
- local HTML_DOCS=( "${WORKDIR}"/html/. )
- distutils-r1_python_install_all
-}
-
-python_install() {
- distutils-r1_python_install ${SCIPY_FCONFIG}
- python_optimize
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer. Example:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-1.5.2.ebuild b/sci-libs/scipy/scipy-1.5.2.ebuild
deleted file mode 100644
index 52f1cb13642..00000000000
--- a/sci-libs/scipy/scipy-1.5.2.ebuild
+++ /dev/null
@@ -1,160 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{6..9} )
-PYTHON_REQ_USE="threads(+)"
-
-DOC_PV=${PV}
-
-inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="https://www.scipy.org/"
-SRC_URI="
- mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
- )"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-IUSE="doc sparse test"
-RESTRICT="!test? ( test )"
-
-CDEPEND="
- >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:0=
- virtual/cblas
- virtual/lapack
- sparse? ( sci-libs/umfpack:0= )"
-DEPEND="${CDEPEND}
- dev-lang/swig
- >=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
- >=dev-python/setuptools-36[${PYTHON_USEDEP}]
- dev-python/pybind11[${PYTHON_USEDEP}]
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- test? (
- dev-python/nose[${PYTHON_USEDEP}]
- dev-python/pytest[${PYTHON_USEDEP}]
- )"
-RDEPEND="${CDEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt THANKS.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
- default
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
- fi
-}
-
-pc_incdir() {
- $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
- sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libdir() {
- $(tc-getPKG_CONFIG) --libs-only-L $@ | \
- sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
-}
-
-pc_libs() {
- $(tc-getPKG_CONFIG) --libs-only-l $@ | \
- sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
- -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
- | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
-}
-
-python_prepare_all() {
- # scipy automatically detects libraries by default
- export {FFTW,FFTW3,UMFPACK}=None
- use sparse && unset UMFPACK
- # the missing symbols are in -lpythonX.Y, but since the version can
- # differ, we just introduce the same scaryness as on Linux/ELF
- [[ ${CHOST} == *-darwin* ]] \
- && append-ldflags -bundle "-undefined dynamic_lookup" \
- || append-ldflags -shared
- [[ -z ${FC} ]] && export FC="$(tc-getFC)"
- # hack to force F77 to be FC until bug #278772 is fixed
- [[ -z ${F77} ]] && export F77="$(tc-getFC)"
- export F90="${FC}"
- export SCIPY_FCONFIG="config_fc --noopt --noarch"
- append-fflags -fPIC
-
- local libdir="${EPREFIX}"/usr/$(get_libdir)
- cat >> site.cfg <<-EOF || die
- [blas]
- include_dirs = $(pc_incdir cblas)
- library_dirs = $(pc_libdir cblas blas):${libdir}
- blas_libs = $(pc_libs cblas blas)
- [lapack]
- library_dirs = $(pc_libdir lapack):${libdir}
- lapack_libs = $(pc_libs lapack)
- EOF
- cat >> setup.cfg <<-EOF || die
- [options]
- zip_safe = False
- EOF
-
- # Drop hashes to force rebuild of cython based .c code
- rm cythonize.dat || die
-
- # TODO
- sed -e 's:test_magic_square_sparse_no_presolve:_&:' \
- -i scipy/optimize/tests/test_linprog.py || die
- sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \
- -i scipy/stats/tests/test_continuous_basic.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- # bug 721860
- test-flag-FC -fallow-argument-mismatch &&
- append-fflags -fallow-argument-mismatch
-}
-
-python_compile() {
- # FIXME: parallel python building fails, bug #614464
- export MAKEOPTS=-j1
-
- ${EPYTHON} tools/cythonize.py || die
- distutils-r1_python_compile \
- ${SCIPY_FCONFIG}
-}
-
-python_test() {
- # fails with bdist_egg. should it be fixed in distutils-r1 eclass?
- distutils_install_for_testing ${SCIPY_FCONFIG}
- cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
- PYTHONPATH=. "${EPYTHON}" -c "
-import scipy, sys
-r = scipy.test('fast', verbose=2)
-sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install_all() {
- use doc && \
- local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
- local HTML_DOCS=( "${WORKDIR}"/html/. )
- distutils-r1_python_install_all
-}
-
-python_install() {
- distutils-r1_python_install ${SCIPY_FCONFIG}
- python_optimize
-}
-
-pkg_postinst() {
- elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
- elog "to your prefered image viewer. Example:"
- elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/shogun/shogun-5.0.0-r1.ebuild b/sci-libs/shogun/shogun-5.0.0-r1.ebuild
index 1db83f206fa..d4e67145a5f 100644
--- a/sci-libs/shogun/shogun-5.0.0-r1.ebuild
+++ b/sci-libs/shogun/shogun-5.0.0-r1.ebuild
@@ -72,7 +72,7 @@ DEPEND="${RDEPEND}
python? (
>=dev-lang/swig-3.0.12
test? (
- sci-libs/scipy
+ dev-python/scipy
)
)
R? ( >=dev-lang/swig-3.0.12 )