diff options
| -rw-r--r-- | sci-biology/pals/files/pals-1.0-fix-build-system.patch | 34 | ||||
| -rw-r--r-- | sci-biology/pals/pals-1.0-r1.ebuild (renamed from sci-biology/pals/pals-1.0.ebuild) | 17 |
2 files changed, 43 insertions, 8 deletions
diff --git a/sci-biology/pals/files/pals-1.0-fix-build-system.patch b/sci-biology/pals/files/pals-1.0-fix-build-system.patch new file mode 100644 index 000000000000..a020a697f85b --- /dev/null +++ b/sci-biology/pals/files/pals-1.0-fix-build-system.patch @@ -0,0 +1,34 @@ +Make build system honour user variables + +--- a/Makefile ++++ b/Makefile +@@ -1,6 +1,4 @@ +-CFLAGS = -O3 -march=pentiumpro -mcpu=pentiumpro -funroll-loops -Winline -DNDEBUG=1 +-LDLIBS = -lm -static +-# LDLIBS = -lm ++LDLIBS = -lm + + OBJ = .o + EXE = +@@ -8,18 +6,13 @@ + RM = rm -f + CP = cp + +-GPP = g++ +-LD = $(GPP) $(CFLAGS) +-CPP = $(GPP) -c $(CFLAGS) +-CC = gcc -c $(CFLAGS) +- + all: pals + + CPPSRC = $(sort $(wildcard *.cpp)) + CPPOBJ = $(subst .cpp,.o,$(CPPSRC)) + +-$(CPPOBJ): %.o: %.cpp +- $(CPP) $< -o $@ ++%.o: %.cpp ++ $(CXX) $(CXXFLAGS) -DNDEBUG $(CPPFLAGS) -c $< -o $@ + + pals: $(CPPOBJ) +- $(LD) -o pals $(CPPOBJ) $(LDLIBS) ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o pals $(CPPOBJ) $(LDLIBS) diff --git a/sci-biology/pals/pals-1.0.ebuild b/sci-biology/pals/pals-1.0-r1.ebuild index 8db3efda19d5..32579b9d0757 100644 --- a/sci-biology/pals/pals-1.0.ebuild +++ b/sci-biology/pals/pals-1.0-r1.ebuild @@ -1,14 +1,13 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI="2" +EAPI=6 inherit toolchain-funcs DESCRIPTION="Pairwise Aligner for Long Sequences" HOMEPAGE="http://www.drive5.com/pals/" -#SRC_URI="http://www.drive5.com/pals/pals_source.tar.gz" -SRC_URI="mirror://gentoo/${P}.tar.gz" +SRC_URI="http://www.drive5.com/pals/pals_source.tar.gz -> ${P}.tar.gz" LICENSE="public-domain" SLOT="0" @@ -18,12 +17,14 @@ IUSE="" RDEPEND="" DEPEND="${RDEPEND}" -S="${WORKDIR}" +S=${WORKDIR} -src_compile() { - emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die +PATCHES=( "${FILESDIR}"/${PN}-1.0-fix-build-system.patch ) + +src_configure() { + tc-export CXX } src_install() { - dobin pals || die + dobin pals } |