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-rw-r--r--sci-biology/sim4/files/sim4-20030921-fix-build-system.patch21
-rw-r--r--sci-biology/sim4/sim4-20030921-r2.ebuild29
2 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/sim4/files/sim4-20030921-fix-build-system.patch b/sci-biology/sim4/files/sim4-20030921-fix-build-system.patch
new file mode 100644
index 000000000000..8fd50fe9cfae
--- /dev/null
+++ b/sci-biology/sim4/files/sim4-20030921-fix-build-system.patch
@@ -0,0 +1,21 @@
+Fix build system to honour user flags.
+
+--- a/Makefile
++++ b/Makefile
+@@ -1,13 +1,11 @@
+-
+ # For better performance, replace ``-O'' with whatever
+ # the best optimization flag is for your computer.
+ # For Sun's compilers under Solaris, ``-fast'' works well.
+ # For gcc, ``-O2'' works well.
+-CC=cc
+-CFLAGS=-O
+-LDLIBS=-lm
++CC ?= gcc
++LDLIBS = -lm
+
+ sim4:
+- $(CC) -o sim4 -I. $(CFLAGS) *.c $(LDLIBS)
++ $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) -o sim4 -I. *.c $(LDLIBS)
+ clean:
+ rm -f sim4 *.o
diff --git a/sci-biology/sim4/sim4-20030921-r2.ebuild b/sci-biology/sim4/sim4-20030921-r2.ebuild
new file mode 100644
index 000000000000..dcfe354d059c
--- /dev/null
+++ b/sci-biology/sim4/sim4-20030921-r2.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="A program to align cDNA and genomic DNA"
+HOMEPAGE="http://globin.cse.psu.edu/html/docs/sim4.html"
+SRC_URI="http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+
+S=${WORKDIR}/${PN}.2003-09-21
+
+PATCHES=( "${FILESDIR}"/${PN}-20030921-fix-build-system.patch )
+
+src_configure() {
+ tc-export CC
+}
+
+src_install() {
+ dobin ${PN}
+ einstalldocs
+}