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Diffstat (limited to 'sci-biology/STAR/STAR-2.5.3a.ebuild')
-rw-r--r--sci-biology/STAR/STAR-2.5.3a.ebuild42
1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/STAR/STAR-2.5.3a.ebuild b/sci-biology/STAR/STAR-2.5.3a.ebuild
new file mode 100644
index 00000000000..73743cbb4e5
--- /dev/null
+++ b/sci-biology/STAR/STAR-2.5.3a.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
+HOMEPAGE="https://github.com/alexdobin/STAR"
+SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="sci-libs/htslib:="
+DEPEND="${RDEPEND}
+ virtual/pkgconfig"
+
+PATCHES=( "${FILESDIR}"/${PN}-2.5.3a-fix-build-system.patch )
+DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
+}
+
+pkg_setup() {
+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
+}
+
+src_configure() {
+ tc-export CC CXX PKG_CONFIG
+}
+
+src_compile() {
+ emake -C source STAR
+}
+
+src_install() {
+ dobin source/STAR
+ einstalldocs
+}