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Diffstat (limited to 'sci-biology/STAR/STAR-2.5.3a.ebuild')
-rw-r--r--sci-biology/STAR/STAR-2.5.3a.ebuild42
1 files changed, 0 insertions, 42 deletions
diff --git a/sci-biology/STAR/STAR-2.5.3a.ebuild b/sci-biology/STAR/STAR-2.5.3a.ebuild
deleted file mode 100644
index 73743cbb4e5..00000000000
--- a/sci-biology/STAR/STAR-2.5.3a.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
-HOMEPAGE="https://github.com/alexdobin/STAR"
-SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND="sci-libs/htslib:="
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-PATCHES=( "${FILESDIR}"/${PN}-2.5.3a-fix-build-system.patch )
-DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
-}
-
-pkg_setup() {
- [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
-}
-
-src_configure() {
- tc-export CC CXX PKG_CONFIG
-}
-
-src_compile() {
- emake -C source STAR
-}
-
-src_install() {
- dobin source/STAR
- einstalldocs
-}