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Diffstat (limited to 'sci-biology/bwa/bwa-0.7.17.ebuild')
-rw-r--r--sci-biology/bwa/bwa-0.7.17.ebuild39
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild
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+++ b/sci-biology/bwa/bwa-0.7.17.ebuild
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+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
+HOMEPAGE="https://github.com/lh3/bwa/"
+SRC_URI="https://github.com/lh3/bwa/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~x64-macos"
+
+DEPEND="sys-libs/zlib"
+RDEPEND="
+ ${DEPEND}
+ dev-lang/perl"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-0.7.17-Makefile.patch
+ "${FILESDIR}"/${PN}-0.7.17-gcc-10.patch
+)
+DOCS=( NEWS.md README-alt.md README.md )
+
+src_configure() {
+ tc-export CC AR
+}
+
+src_install() {
+ dobin bwa
+
+ exeinto /usr/libexec/${PN}
+ doexe qualfa2fq.pl xa2multi.pl
+
+ einstalldocs
+ doman bwa.1
+}