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Diffstat (limited to 'sci-biology/bwa/bwa-0.7.17.ebuild')
-rw-r--r-- | sci-biology/bwa/bwa-0.7.17.ebuild | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild new file mode 100644 index 000000000000..3da06fd74f92 --- /dev/null +++ b/sci-biology/bwa/bwa-0.7.17.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" +HOMEPAGE="https://github.com/lh3/bwa/" +SRC_URI="https://github.com/lh3/bwa/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~x64-macos" + +DEPEND="sys-libs/zlib" +RDEPEND=" + ${DEPEND} + dev-lang/perl" + +PATCHES=( + "${FILESDIR}"/${PN}-0.7.17-Makefile.patch + "${FILESDIR}"/${PN}-0.7.17-gcc-10.patch +) +DOCS=( NEWS.md README-alt.md README.md ) + +src_configure() { + tc-export CC AR +} + +src_install() { + dobin bwa + + exeinto /usr/libexec/${PN} + doexe qualfa2fq.pl xa2multi.pl + + einstalldocs + doman bwa.1 +} |