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Diffstat (limited to 'sci-biology/wise/wise-2.4.0_alpha-r1.ebuild')
-rw-r--r--sci-biology/wise/wise-2.4.0_alpha-r1.ebuild71
1 files changed, 71 insertions, 0 deletions
diff --git a/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild b/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild
new file mode 100644
index 00000000000..a033ffd011b
--- /dev/null
+++ b/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild
@@ -0,0 +1,71 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+MY_PV="${PV/_}"
+MY_P="${PN}${MY_PV}"
+DESCRIPTION="Intelligent algorithms for DNA searches"
+HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
+SRC_URI="
+ ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${MY_P}.tar.gz
+ https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2
+"
+S="${WORKDIR}"/${MY_P}
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+RDEPEND="~sci-biology/hmmer-2.3.2"
+DEPEND="${RDEPEND}"
+BDEPEND="
+ app-shells/tcsh
+ dev-lang/perl
+ virtual/latex-base
+"
+
+PATCHES=(
+ "${WORKDIR}"/${P}-patchset/${P}-glibc-2.10.patch
+ "${WORKDIR}"/${P}-patchset/${P}-cflags.patch
+)
+
+src_prepare() {
+ default
+ cd docs || die
+ cat ../src/models/*.tex ../src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die
+ cat wise2api.tex temp.tex apiend.tex > api.tex || die
+ eapply "${FILESDIR}"/${PN}-api.tex.patch
+}
+
+src_compile() {
+ tc-export CC
+ emake -C src all
+
+ if use doc; then
+ cd docs || die
+ for i in api appendix dynamite wise2 wise3arch; do
+ latex ${i} || die
+ latex ${i} || die
+ dvips ${i}.dvi -o || die
+ done
+ fi
+}
+
+src_test() {
+ cd src || die
+ WISECONFIGDIR="${S}/wisecfg" emake test
+}
+
+src_install() {
+ dobin src/bin/* src/dynlibsrc/testgendb
+
+ insinto /usr/share/${PN}
+ doins -r wisecfg
+
+ use doc && dodoc docs/*.ps
+ newenvd "${WORKDIR}"/${P}-patchset/${PN}-env 24wise
+}