13 files changed, 13 insertions, 13 deletions
diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild
index 79b70ff8786a..9386b377080b 100644
--- a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild
+++ b/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild
@@ -4,7 +4,7 @@
 
 EAPI="2"
 
-ESVN_REPO_URI="http://beast-mcmc.googlecode.com/svn/trunk/"
+ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
 
 WANT_ANT_TASKS="ant-junit4"
 EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild
index fa2e43e1856b..9c16643760a2 100644
--- a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild
+++ b/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-ESVN_REPO_URI="http://beast-mcmc.googlecode.com/svn/trunk/"
+ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
 
 WANT_ANT_TASKS="ant-junit4"
 EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
diff --git a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
index 8f6e66493518..a1084762b352 100644
--- a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
+++ b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI="2"
 
-ESVN_REPO_URI="http://beast-mcmc.googlecode.com/svn/trunk/"
+ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
 
 WANT_ANT_TASKS="ant-junit4"
 EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
diff --git a/sci-biology/bedtools/bedtools-2.16.2.ebuild b/sci-biology/bedtools/bedtools-2.16.2.ebuild
index 1863dbaa5b36..9a8fdda50bc8 100644
--- a/sci-biology/bedtools/bedtools-2.16.2.ebuild
+++ b/sci-biology/bedtools/bedtools-2.16.2.ebuild
@@ -8,7 +8,7 @@ inherit flag-o-matic
 
 DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats"
 HOMEPAGE="https://code.google.com/p/bedtools/"
-SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz"
+SRC_URI="https://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
diff --git a/sci-biology/cd-hit/cd-hit-4.5.1.ebuild b/sci-biology/cd-hit/cd-hit-4.5.1.ebuild
index d47948f0d821..e1eeac9a03ea 100644
--- a/sci-biology/cd-hit/cd-hit-4.5.1.ebuild
+++ b/sci-biology/cd-hit/cd-hit-4.5.1.ebuild
@@ -11,7 +11,7 @@ RELEASE="${PN}-v${PV}-${RELDATE}"
 
 DESCRIPTION="Clustering Database at High Identity with Tolerance"
 HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
-SRC_URI="http://cdhit.googlecode.com/files/${RELEASE}.tgz"
+SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
 
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-biology/cd-hit/cd-hit-4.5.4.ebuild b/sci-biology/cd-hit/cd-hit-4.5.4.ebuild
index bafa3301d724..032aafc43bf3 100644
--- a/sci-biology/cd-hit/cd-hit-4.5.4.ebuild
+++ b/sci-biology/cd-hit/cd-hit-4.5.4.ebuild
@@ -11,7 +11,7 @@ RELEASE="${PN}-v${PV}-${RELDATE}"
 
 DESCRIPTION="Clustering Database at High Identity with Tolerance"
 HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
-SRC_URI="http://cdhit.googlecode.com/files/${RELEASE}.tgz"
+SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
 
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-biology/cd-hit/cd-hit-4.6.ebuild b/sci-biology/cd-hit/cd-hit-4.6.ebuild
index d7dd15559c5c..73c8e48636e7 100644
--- a/sci-biology/cd-hit/cd-hit-4.6.ebuild
+++ b/sci-biology/cd-hit/cd-hit-4.6.ebuild
@@ -11,7 +11,7 @@ RELEASE="${PN}-v${PV}-${RELDATE}"
 
 DESCRIPTION="Clustering Database at High Identity with Tolerance"
 HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
-SRC_URI="http://cdhit.googlecode.com/files/${RELEASE}.tgz"
+SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
 
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
diff --git a/sci-biology/mosaik/mosaik-1.0.1367.ebuild b/sci-biology/mosaik/mosaik-1.0.1367.ebuild
index b8ee53159f56..1813735f11cb 100644
--- a/sci-biology/mosaik/mosaik-1.0.1367.ebuild
+++ b/sci-biology/mosaik/mosaik-1.0.1367.ebuild
@@ -6,7 +6,7 @@ EAPI="2"
 
 DESCRIPTION="A reference-guided aligner for next-generation sequencing technologies"
 HOMEPAGE="https://code.google.com/p/mosaik-aligner/"
-SRC_URI="http://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2"
+SRC_URI="https://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2"
 
 LICENSE="GPL-2"
 SLOT="0"
diff --git a/sci-biology/mosaik/mosaik-1.0.1388.ebuild b/sci-biology/mosaik/mosaik-1.0.1388.ebuild
index 47d9c8265dc4..ce345c09ebd5 100644
--- a/sci-biology/mosaik/mosaik-1.0.1388.ebuild
+++ b/sci-biology/mosaik/mosaik-1.0.1388.ebuild
@@ -6,7 +6,7 @@ EAPI="2"
 
 DESCRIPTION="A reference-guided aligner for next-generation sequencing technologies"
 HOMEPAGE="https://code.google.com/p/mosaik-aligner/"
-SRC_URI="http://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2"
+SRC_URI="https://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2"
 
 LICENSE="GPL-2"
 SLOT="0"
diff --git a/sci-biology/prank/prank-111130.ebuild b/sci-biology/prank/prank-111130.ebuild
index 4d4f6e912495..d0d1ae08a2b3 100644
--- a/sci-biology/prank/prank-111130.ebuild
+++ b/sci-biology/prank/prank-111130.ebuild
@@ -8,7 +8,7 @@ inherit eutils multilib toolchain-funcs
 
 DESCRIPTION="Probabilistic Alignment Kit"
 HOMEPAGE="http://wasabiapp.org/software/prank/"
-SRC_URI="http://prank-msa.googlecode.com/files/prank.src.${PV}.tgz"
+SRC_URI="https://prank-msa.googlecode.com/files/prank.src.${PV}.tgz"
 
 LICENSE="GPL-3"
 SLOT="0"
diff --git a/sci-biology/prodigal/prodigal-2.50.ebuild b/sci-biology/prodigal/prodigal-2.50.ebuild
index aef6ad6781c9..6da0b0000cdc 100644
--- a/sci-biology/prodigal/prodigal-2.50.ebuild
+++ b/sci-biology/prodigal/prodigal-2.50.ebuild
@@ -8,7 +8,7 @@ MY_PV=${PV//./_}
 
 DESCRIPTION="Prokaryotic Dynamic Programming Genefinding Algorithm"
 HOMEPAGE="http://prodigal.ornl.gov/ https://code.google.com/p/prodigal/"
-SRC_URI="http://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
+SRC_URI="https://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
diff --git a/sci-biology/prodigal/prodigal-2.60.ebuild b/sci-biology/prodigal/prodigal-2.60.ebuild
index bfefe4567d8f..eb0100b060e7 100644
--- a/sci-biology/prodigal/prodigal-2.60.ebuild
+++ b/sci-biology/prodigal/prodigal-2.60.ebuild
@@ -8,7 +8,7 @@ MY_PV=${PV//./_}
 
 DESCRIPTION="Prokaryotic Dynamic Programming Genefinding Algorithm"
 HOMEPAGE="http://prodigal.ornl.gov/ https://code.google.com/p/prodigal/"
-SRC_URI="http://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
+SRC_URI="https://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
diff --git a/sci-biology/pysam/pysam-0.6-r1.ebuild b/sci-biology/pysam/pysam-0.6-r1.ebuild
index 7c6c305f0d34..6faa5a91d3b6 100644
--- a/sci-biology/pysam/pysam-0.6-r1.ebuild
+++ b/sci-biology/pysam/pysam-0.6-r1.ebuild
@@ -10,7 +10,7 @@ inherit distutils-r1
 
 DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
 HOMEPAGE="https://code.google.com/p/pysam https://pypi.python.org/pypi/pysam"
-SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
+SRC_URI="https://${PN}.googlecode.com/files/${P}.tar.gz"
 
 LICENSE="MIT"
 SLOT="0"