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-rw-r--r--sci-libs/Rtree/Manifest2
-rw-r--r--sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild28
-rw-r--r--sci-libs/adolc/adolc-2.7.2.ebuild14
-rw-r--r--sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch391
-rw-r--r--sci-libs/amd/amd-2.4.6.ebuild2
-rw-r--r--sci-libs/brial/Manifest1
-rw-r--r--sci-libs/brial/brial-1.2.10.ebuild39
-rw-r--r--sci-libs/btf/btf-1.2.6.ebuild2
-rw-r--r--sci-libs/camd/camd-2.4.6.ebuild2
-rw-r--r--sci-libs/cantera/cantera-2.4.0-r5.ebuild2
-rw-r--r--sci-libs/cartopy/cartopy-0.18.0.ebuild2
-rw-r--r--sci-libs/ccolamd/ccolamd-2.9.6.ebuild2
-rw-r--r--sci-libs/cholmod/Manifest1
-rw-r--r--sci-libs/cholmod/cholmod-2.1.2.ebuild2
-rw-r--r--sci-libs/cholmod/cholmod-3.0.13.ebuild2
-rw-r--r--sci-libs/cholmod/cholmod-3.0.14.ebuild71
-rw-r--r--sci-libs/coinor-cppad/Manifest1
-rw-r--r--sci-libs/coinor-cppad/coinor-cppad-20140204.ebuild51
-rw-r--r--sci-libs/coinor-cppad/coinor-cppad-20140519.ebuild51
-rw-r--r--sci-libs/colamd/colamd-2.9.6.ebuild2
-rw-r--r--sci-libs/colpack/colpack-1.0.10.ebuild2
-rw-r--r--sci-libs/cxsparse/cxsparse-3.2.0.ebuild2
-rw-r--r--sci-libs/dcmtk/dcmtk-3.6.5.ebuild2
-rw-r--r--sci-libs/fftw/Manifest1
-rw-r--r--sci-libs/fftw/fftw-3.3.6_p2.ebuild181
-rw-r--r--sci-libs/fftw/fftw-3.3.8.ebuild182
-rw-r--r--sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0-r1.ebuild (renamed from sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0.ebuild)1
-rw-r--r--sci-libs/keras-applications/keras-applications-1.0.8-r1.ebuild20
-rw-r--r--sci-libs/keras-preprocessing/keras-preprocessing-1.1.0-r1.ebuild22
-rw-r--r--sci-libs/lapack/lapack-3.9.0.ebuild4
-rw-r--r--sci-libs/libecpint/Manifest1
-rw-r--r--sci-libs/libecpint/libecpint-1.0.2.ebuild27
-rw-r--r--sci-libs/libecpint/metadata.xml17
-rw-r--r--sci-libs/libexcelformat/libexcelformat-101016.ebuild4
-rw-r--r--sci-libs/libh2o/libh2o-0.2.1-r1.ebuild6
-rw-r--r--sci-libs/libh2o/libh2o-9999.ebuild37
-rw-r--r--sci-libs/libh2oxx/libh2oxx-0.2-r1.ebuild3
-rw-r--r--sci-libs/libh2oxx/libh2oxx-9999.ebuild38
-rw-r--r--sci-libs/libint/Manifest2
-rw-r--r--sci-libs/libint/libint-2.6.0-r2.ebuild62
-rw-r--r--sci-libs/libint/libint-2.6.0.ebuild (renamed from sci-libs/libint/libint-2.0.5.ebuild)40
-rw-r--r--sci-libs/libsvm/Manifest1
-rw-r--r--sci-libs/libsvm/libsvm-3.22.ebuild117
-rw-r--r--sci-libs/libticables2/Manifest2
-rw-r--r--sci-libs/libticables2/libticables2-1.3.3-r1.ebuild48
-rw-r--r--sci-libs/libticables2/libticables2-1.3.4.ebuild48
-rw-r--r--sci-libs/libxc/Manifest1
-rw-r--r--sci-libs/libxc/libxc-2.1.3.ebuild56
-rw-r--r--sci-libs/magma/Manifest2
-rw-r--r--sci-libs/magma/magma-1.4.0.ebuild124
-rw-r--r--sci-libs/magma/magma-1.4.1.ebuild124
-rw-r--r--sci-libs/magma/metadata.xml18
-rw-r--r--sci-libs/minfx/Manifest1
-rw-r--r--sci-libs/minfx/metadata.xml13
-rw-r--r--sci-libs/minfx/minfx-1.0.11.ebuild17
-rw-r--r--sci-libs/openblas/openblas-0.3.10.ebuild2
-rw-r--r--sci-libs/plotmm/Manifest1
-rw-r--r--sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch100
-rw-r--r--sci-libs/plotmm/metadata.xml8
-rw-r--r--sci-libs/plotmm/plotmm-0.1.2.ebuild58
-rw-r--r--sci-libs/plplot/files/plplot-5.15.0-QPainterPath-include.patch10
-rw-r--r--sci-libs/plplot/plplot-5.15.0-r1.ebuild1
-rw-r--r--sci-libs/qd/qd-2.3.17.ebuild4
-rw-r--r--sci-libs/qd/qd-2.3.22.ebuild4
-rw-r--r--sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild2
-rw-r--r--sci-libs/rtree/Manifest1
-rw-r--r--sci-libs/rtree/metadata.xml (renamed from sci-libs/Rtree/metadata.xml)0
-rw-r--r--sci-libs/rtree/rtree-0.9.4-r1.ebuild (renamed from sci-libs/Rtree/Rtree-0.9.4.ebuild)10
-rw-r--r--sci-libs/scotch/files/scotch-5.1.12b-as-needed.patch112
-rw-r--r--sci-libs/shapely/Manifest (renamed from sci-libs/Shapely/Manifest)3
-rw-r--r--sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch (renamed from sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch)0
-rw-r--r--sci-libs/shapely/metadata.xml (renamed from sci-libs/Shapely/metadata.xml)6
-rw-r--r--sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild (renamed from sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild)14
-rw-r--r--sci-libs/shapely/shapely-1.7.0.ebuild (renamed from sci-libs/Shapely/Shapely-1.7.0.ebuild)7
-rw-r--r--sci-libs/shapely/shapely-1.7.1.ebuild39
-rw-r--r--sci-libs/sundials/sundials-5.2.0.ebuild2
-rw-r--r--sci-libs/tensorflow-estimator/Manifest1
-rw-r--r--sci-libs/tensorflow-estimator/tensorflow-estimator-2.2.0-r2.ebuild74
-rw-r--r--sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild75
-rw-r--r--sci-libs/tensorflow/Manifest17
-rw-r--r--sci-libs/tensorflow/tensorflow-2.2.0-r2.ebuild382
-rw-r--r--sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild405
-rw-r--r--sci-libs/tensorflow/tensorflow-2.3.1.ebuild405
-rw-r--r--sci-libs/xkaapi/Manifest1
-rw-r--r--sci-libs/xkaapi/xkaapi-2.1.ebuild57
-rw-r--r--sci-libs/xylib/Manifest2
-rw-r--r--sci-libs/xylib/xylib-1.2.ebuild30
-rw-r--r--sci-libs/xylib/xylib-1.6.ebuild42
88 files changed, 2192 insertions, 1577 deletions
diff --git a/sci-libs/Rtree/Manifest b/sci-libs/Rtree/Manifest
deleted file mode 100644
index 5d97cab36f4..00000000000
--- a/sci-libs/Rtree/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST Rtree-0.8.3_p20180802.tar.gz 48893 BLAKE2B bd0745e8e5051a772c2d50fe35712dc661737f32f6af382579dbbffc7467c21ef73bbeb794489da9891e50497b6f8775b1a670185453d54881e6dc8496fef539 SHA512 10c35a1d00369b3a30c486830d7cecdae6bd9bbc2ab9ea7f398227bc46b116783b1486cc75759eb27d7b25439400cbc39b55e6f58c686caec45bbc8436c6067c
-DIST Rtree-0.9.4.tar.gz 62017 BLAKE2B 72a979a3b9b9e9e1d18ea8646bbf860413c18420ce40946108c4f2f0e59fcb5bb64971a57936a92714e02e13419f7dc594b2371e4b44a4fd6a3e3986c19f7d85 SHA512 59981ffefedac1162faaa86ea10d7d5503da46c7ae9588a57e1a49214043de5f41bd4836965651d4cd22e7959c37cc6d586d9912568a2aaf693a0afb7895b429
diff --git a/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild b/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild
deleted file mode 100644
index 0832cb96d36..00000000000
--- a/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="7"
-PYTHON_COMPAT=( python3_{6,7} )
-
-inherit distutils-r1
-
-EGIT_COMMIT_HASH="c6437a8ae182cb58aef1d0a4465bfc0c6f75b273"
-
-DESCRIPTION="R-Tree spatial index for Python GIS"
-HOMEPAGE="https://github.com/Toblerity/rtree"
-SRC_URI="https://github.com/Toblerity/rtree/archive/${EGIT_COMMIT_HASH}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="sci-libs/libspatialindex"
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]"
-
-S="${WORKDIR}/rtree-${EGIT_COMMIT_HASH}"
-
-python_test() {
- pytest -vv || die
-}
diff --git a/sci-libs/adolc/adolc-2.7.2.ebuild b/sci-libs/adolc/adolc-2.7.2.ebuild
index dc6d88c74f3..891eda2001d 100644
--- a/sci-libs/adolc/adolc-2.7.2.ebuild
+++ b/sci-libs/adolc/adolc-2.7.2.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-inherit autotools toolchain-funcs eutils
+inherit autotools toolchain-funcs
DESCRIPTION="Automatic differentiation system for C/C++"
HOMEPAGE="https://projects.coin-or.org/ADOL-C/"
@@ -11,11 +11,9 @@ HOMEPAGE="https://projects.coin-or.org/ADOL-C/"
if [[ ${PV} = *9999* ]]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/coin-or/ADOL-C"
- SRC_URI=""
- KEYWORDS=""
else
SRC_URI="https://github.com/coin-or/ADOL-C/archive/releases/${PV}.tar.gz -> ${P}.tar.gz"
- KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+ KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
S="${WORKDIR}/ADOL-C-releases-${PV}"
fi
@@ -33,6 +31,7 @@ PATCHES=(
"${FILESDIR}"/${PN}-2.5.0-no-colpack.patch
"${FILESDIR}"/${PN}-2.5.0-pkgconfig-no-ldflags.patch
"${FILESDIR}"/${PN}-2.6.2-dash.patch
+ "${FILESDIR}"/${P}-swig-python-configure.patch
)
src_prepare() {
@@ -41,9 +40,14 @@ src_prepare() {
}
src_configure() {
+ # Disabling Python for now because swig build
+ # needs work. Revisit with >=2.7.3.
+ # https://bugs.gentoo.org/730750
+ # https://github.com/coin-or/ADOL-C/issues/20
econf \
--enable-advanced-branching \
--enable-atrig-erf \
+ --disable-python \
$(use_enable mpi ampi) \
$(use_enable sparse) \
$(use_enable static-libs static) \
@@ -52,6 +56,8 @@ src_configure() {
}
src_test() {
+ # 'check' target is unrelated to checking lib works
+ # ('check' is more like distcheck)
emake test
}
diff --git a/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch b/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch
new file mode 100644
index 00000000000..c434f655683
--- /dev/null
+++ b/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch
@@ -0,0 +1,391 @@
+https://bugs.gentoo.org/730750
+https://github.com/coin-or/ADOL-C/commit/8b53408d08f41ddaba2dea5655d332b13fc4c78b.patch
+https://github.com/coin-or/ADOL-C/commit/06b3b665fc0253ee17f0208bd06cdc130e103741.patch
+https://github.com/coin-or/ADOL-C/commit/25a69c486829ddaa19c115afc05cb7cf3b4e2410.patch
+https://github.com/coin-or/ADOL-C/commit/e41d32ba6dab09a3e58b22f1f042e49cd5ee917f.patch
+https://github.com/coin-or/ADOL-C/commit/0787a350cc181192cfd203b0f75941bcbd9c3e3a.patch
+https://github.com/coin-or/ADOL-C/commit/0b3dd1747f90f68b17dc5f1bd3a5d898e3bc77fb.patch
+----
+From e41d32ba6dab09a3e58b22f1f042e49cd5ee917f Mon Sep 17 00:00:00 2001
+From: Andrea Walther <walthand@math55020.mathematik.hu-berlin.de>
+Date: Tue, 22 Sep 2020 10:47:27 +0200
+Subject: [PATCH] fix prefix and provide --enable-python
+
+---
+ configure.ac | 19 ++++++++++++++++++-
+ 1 file changed, 18 insertions(+), 1 deletion(-)
+
+diff --git a/configure.ac b/configure.ac
+index 6c2c88f9..b6aaeaa7 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -71,6 +71,17 @@ if test x"${adolc_medipack_support}" = xyes ; then
+ AC_DEFINE(ADOLC_MEDIPACK_SUPPORT,1,[defined if MeDiPack support is to be compiled in])
+ fi
+
++
++AC_MSG_CHECKING(whether to build ADOL-C with python/swig support)
++AC_ARG_ENABLE(python,
++ [AS_HELP_STRING([--enable-python],[build ADOL-C with python/swig support [default=disabled]])],
++ [adolc_python_support=$enableval],[adolc_python_support=no])
++AC_MSG_RESULT($adolc_python_support)
++AM_CONDITIONAL(BUILD_ADOLC_python_SUPPORT,[test x${adolc_python_support} = xyes])
++if test x"${adolc_python_support}" = xyes ; then
++AC_DEFINE(ADOLC_python_SUPPORT,1,[defined if python/swig support is to be compiled in])
++fi
++
+ LT_PREREQ([2.2.6])
+ # checks for programs
+ AC_PROG_CXX
+@@ -651,6 +662,10 @@ if test x$sparse = xyes && test x$have_colpack = xno; then
+ Only sparsity patterns can be computed\033@<:@0m"
+ warn=true
+ fi
++echo \
++" Build with python: ${adolc_python_support}"
++
++if test x$adolc_python_support = xyes ; then
+ if test x$sparse = xyes && test x$python_found = xyes && test x$SWIG != xno; then
+ echo \
+ " Build with python swig module: yes"
+@@ -660,7 +675,7 @@ else
+ if test x$sparse = xno && test x$python_found = xyes && test x$SWIG != xno; then
+ echo \
+ "(due to sparse drivers disabled)"
+- elif test x$sparse = xyes && ( $test x$python_found = xno || test x$SWIG = xno ); then
++ elif test x$sparse = xyes && ( test x$python_found = xno || test x$SWIG = xno ); then
+ echo \
+ "(due to python/swig missing)"
+ else
+@@ -668,6 +683,8 @@ else
+ "(due to sparse drivers disabled and python/swig missing)"
+ fi
+ fi
++fi
++
+ echo
+
+ echo \
+From 8b53408d08f41ddaba2dea5655d332b13fc4c78b Mon Sep 17 00:00:00 2001
+From: Kshitij Kulshreshtha <kkhere.geo@gmail.com>
+Date: Tue, 31 Mar 2020 22:42:23 +0200
+Subject: [PATCH] Fix out-of-tree build for swig
+
+---
+ ADOL-C/swig/Makefile.am | 4 +--
+ ADOL-C/swig/setup.py | 65 +++++++++++++++++++++++++++-----------
+ ADOL-C/swig/swigprocess.py | 34 +++++++++++---------
+ Makefile.am | 3 +-
+ configure.ac | 6 ++++
+ 5 files changed, 75 insertions(+), 37 deletions(-)
+
+diff --git a/ADOL-C/swig/Makefile.am b/ADOL-C/swig/Makefile.am
+index 04a52cd0..b1d5569b 100644
+--- a/ADOL-C/swig/Makefile.am
++++ b/ADOL-C/swig/Makefile.am
+@@ -12,7 +12,7 @@
+
+ ACLOCAL_AMFLAGS = -I autoconf
+
+-EXTRA_DIST = swigprocess.py adolc-r.i adolc-python.i adubswigfuncs.h adolc_all_in.hpp matrixmemory.hpp pyedfclasses.hpp
++EXTRA_DIST = swigprocess.py adolc-r.i adolc-python.i adubswigfuncs.hpp adolc_all_in.hpp matrixmemory.hpp pyedfclasses.hpp
+
+ clean-local:
+ -rm -rf python R *.cpp *.cxx *.o *.h include
+@@ -20,6 +20,6 @@ clean-local:
+ if PYTHONFOUND
+ if SPARSE
+ install:
+- CXX=${CXX} ${PYTHON} setup.py install --prefix=${prefix} --only-swig
++ CXX=${CXX} ${PYTHON} ${srcdir}/setup.py build --only-swig --lib-prefix=${prefix} @python_srcbase@ install --prefix=${prefix}
+ endif
+ endif
+diff --git a/ADOL-C/swig/setup.py b/ADOL-C/swig/setup.py
+index 7a9a25c4..5bd98c3a 100644
+--- a/ADOL-C/swig/setup.py
++++ b/ADOL-C/swig/setup.py
+@@ -11,6 +11,10 @@
+ ##############################################################################
+
+ from __future__ import print_function
++import sys, os
++
++sys.path = [ os.path.dirname(os.path.abspath(__file__)) ] + sys.path
++
+ from swigprocess import prepare_flat_header
+ from numpy.distutils import misc_util as np_dist
+ from distutils.core import setup, Extension
+@@ -18,7 +22,6 @@
+ from distutils.command.build_ext import build_ext
+ from distutils.command.build import build
+ from distutils.command.install import install
+-import os
+ import subprocess
+
+ def compile_dynlib(prefix,colpackdir,boostdir):
+@@ -88,14 +91,34 @@ def finalize_options(self):
+ prefix = self.lib_prefix
+ print('prefix = ', prefix)
+ self.include_dirs.append(os.path.join(prefix,'include'))
+- self.library_dirs.append(os.path.join(prefix,'lib64'))
+- self.rpath.append(os.path.join(prefix,'lib64'))
+- prepare_flat_header()
++ import ctypes as c
++ plen = c.sizeof(c.c_void_p(0))
++ if plen == 8:
++ self.library_dirs.append(os.path.join(prefix,'lib64'))
++ self.rpath.append(os.path.join(prefix,'lib64'))
++ else:
++ self.library_dirs.append(os.path.join(prefix,'lib'))
++ self.rpath.append(os.path.join(prefix,'lib'))
++ buildobj = self.get_finalized_command('build')
++ self.src = buildobj.src
++ prepare_flat_header(self.src)
++ self.swig_opts = ['-c++', '-I' + self.src]
++ self.finalized = 1
+
++ def build_extension(self, ext):
++ if self.src != '.':
++ import shutil
++ sources = ext.sources
++ newSrc = []
++ for s in iter(sources):
++ shutil.copy(self.src + '/' + s, '.')
++ ext.include_dirs.append(self.src)
++ super(build_swigadolc,self).build_extension(ext)
+
+ class buildthis(build,object):
+ command_name = 'build'
+ user_options = build.user_options + [
++ ('src=', None, 'path of the source directory of swig module'),
+ ('lib-prefix=', None, 'prefix to install adolc library'),
+ ('colpack-dir=', None, 'directory in which colpack is installed'),
+ ('boost-dir=', None, 'directory in which boost is installed'),
+@@ -111,11 +134,26 @@ def lib_doesnot_exist(self):
+
+ def initialize_options(self):
+ super(buildthis,self).initialize_options()
++ self.src = None
+ self.lib_prefix = None
+ self.colpack_dir = None
+ self.boost_dir = None
+ self.only_swig = None
+
++ def finalize_options(self):
++ super(buildthis,self).finalize_options()
++ if self.src is None:
++ self.src = '.'
++ if self.lib_prefix is None:
++ self.lib_prefix = os.path.join(os.environ['HOME'],'adolc_base')
++ if self.colpack_dir is None:
++ self.colpack_dir = os.path.join(os.environ['HOME'],'adolc_base')
++ if self.boost_dir is None:
++ self.boost_dir = '/usr'
++ if self.only_swig is None:
++ self.only_swig = False
++ self.finalized = 1
++
+ #sub_commands = [ ('build_lib', lib_doesnot_exist),
+ # ('build_ext', None) ]
+ sub_commands = [ ('build_lib', None),
+@@ -137,22 +175,13 @@ def initialize_options(self):
+ super(installthis,self).initialize_options()
+
+ def finalize_options(self):
++ self.set_undefined_options('build',
++ ('lib_prefix','lib_prefix'),
++ ('colpack_dir', 'colpack_dir'),
++ ('boost_dir', 'boost_dir'),
++ ('only_swig', 'only_swig'))
+ super(installthis,self).finalize_options()
+- if self.lib_prefix is None:
+- self.lib_prefix = os.path.join(os.environ['HOME'],'adolc_base')
+- if self.colpack_dir is None:
+- self.colpack_dir = os.path.join(os.environ['HOME'],'adolc_base')
+- if self.boost_dir is None:
+- self.boost_dir = '/usr'
+- if self.only_swig is None:
+- self.only_swig = False
+ self.finalized = 1
+- buildobj = self.distribution.get_command_obj('build')
+- buildobj.set_undefined_options('install',
+- ('lib_prefix','lib_prefix'),
+- ('colpack_dir', 'colpack_dir'),
+- ('boost_dir', 'boost_dir'),
+- ('only_swig', 'only_swig'))
+
+ incdirs = np_dist.get_numpy_include_dirs()
+ #python_ldflags = subprocess.check_output(['python-config','--ldflags'],universal_newlines=True)
+diff --git a/ADOL-C/swig/swigprocess.py b/ADOL-C/swig/swigprocess.py
+index bd5fe03d..f9de5551 100644
+--- a/ADOL-C/swig/swigprocess.py
++++ b/ADOL-C/swig/swigprocess.py
+@@ -10,6 +10,7 @@
+ ##
+ ##############################################################################
+
++from __future__ import print_function
+ import re
+ import os.path
+ import sys
+@@ -191,22 +192,25 @@ def finalClean(headfile,outfiles):
+ for f in glob.glob('*.o'):
+ os.remove(f)
+
+-def prepare_flat_header():
+- sys.path = [ os.getcwd() ] + sys.path
+- p = os.getcwd() + '/../include/adolc'
+- for (dp, dn, fn) in os.walk(p):
+- ndp = re.sub(r'\.\./',r'',dp)
+- for f in iter(fn):
+- lines = readFile(dp + "/" + f)
+- lines = comment_all_includes(lines)
+- lines = uncomment_local_includes(lines)
+- try:
+- os.makedirs(ndp)
+- except:
+- pass
+- writeOutput(lines, ndp + "/" + f)
++def prepare_flat_header(src_base='.'):
++ pl = [ os.getcwd() + '/../include/adolc' ]
++ print('src_base = ', src_base)
++ if src_base != '.':
++ pl = [ src_base + '/../include/adolc' ] + pl
++ for p in iter(pl):
++ for (dp, dn, fn) in os.walk(p):
++ ndp = re.sub(r'^.*\.\./',r'',dp)
++ for f in iter(fn):
++ lines = readFile(dp + "/" + f)
++ lines = comment_all_includes(lines)
++ lines = uncomment_local_includes(lines)
++ try:
++ os.makedirs(ndp)
++ except:
++ pass
++ writeOutput(lines, ndp + "/" + f)
+
+- invoke_cpp('adolc_all_in.hpp', 'adolc_all_pre.hpp')
++ invoke_cpp(src_base + '/' + 'adolc_all_in.hpp', 'adolc_all_pre.hpp')
+ lines = readFile('adolc_all_pre.hpp')
+ lines = reinstate_nonlocal_include(lines)
+ writeOutput(lines,'adolc_all.hpp')
+diff --git a/Makefile.am b/Makefile.am
+index fb66e9f3..123ac905 100644
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -24,13 +24,12 @@ EXTRA_DIST = TODO BUGS LICENSE update_versions.sh \
+ ADOL-C/doc/tapebasic.pdf ADOL-C/doc/tapebasic.eps \
+ ADOL-C/doc/tap_point.pdf ADOL-C/doc/tap_point.eps \
+ MSVisualStudio/v14/adolc.sln MSVisualStudio/v14/adolc.vcxproj \
+- MSVisualStudio/v14/ColPack_Readme_VC++.txt \
+ MSVisualStudio/v14/ColPack.vcxproj \
+ MSVisualStudio/v14/sparse/config.h.in MSVisualStudio/v14/nosparse/config.h.in \
+ MSVisualStudio/v14/x64/sparse/config.h.in MSVisualStudio/v14/x64/nosparse/config.h.in \
+ MSVisualStudio/v14/sparse/config.h MSVisualStudio/v14/nosparse/config.h \
+ MSVisualStudio/v14/x64/sparse/config.h MSVisualStudio/v14/x64/nosparse/config.h \
+- MSVisualStudio/v14/Readme_VC++.txt \
++ MSVisualStudio/v14/README_VC++.md \
+ MSVisualStudio/v14/installer.sh \
+ adolc.spec.in adolc.spec \
+ update_versions.sh
+diff --git a/configure.ac b/configure.ac
+index ddb08de1..6c2c88f9 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -501,6 +501,12 @@ fi
+ AM_PATH_PYTHON([2.7],[python_found=yes],[python_found=no])
+ AC_PATH_PROG(SWIG, swig, [no])
+ AM_CONDITIONAL(PYTHONFOUND, [test x$python_found = xyes && test x$SWIG != xno])
++if test ${abs_top_srcdir} != ${abs_top_builddir} ; then
++ python_srcbase='--src=${abs_srcdir}'
++else
++ python_srcbase=''
++fi
++AC_SUBST(python_srcbase)
+ ###########################################################################
+ # COIN_PATCH_LIBTOOL_CYGWIN #
+ ###########################################################################
+
+From 25a69c486829ddaa19c115afc05cb7cf3b4e2410 Mon Sep 17 00:00:00 2001
+From: Kshitij Kulshreshtha <kkhere.geo@gmail.com>
+Date: Wed, 1 Apr 2020 02:36:12 +0200
+Subject: [PATCH] another small fix for swig, this time for in-tree check
+
+---
+ ADOL-C/swig/setup.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/ADOL-C/swig/setup.py b/ADOL-C/swig/setup.py
+index e6023679..4ec9a7cc 100644
+--- a/ADOL-C/swig/setup.py
++++ b/ADOL-C/swig/setup.py
+@@ -105,7 +105,7 @@ def finalize_options(self):
+ self.finalized = 1
+
+ def build_extension(self, ext):
+- if self.src != '.':
++ if os.path.abspath(os.path.realpath(self.src)) != os.path.abspath('.'):
+ import shutil
+ sources = ext.sources
+ newSrc = []
+From 0787a350cc181192cfd203b0f75941bcbd9c3e3a Mon Sep 17 00:00:00 2001
+From: Andrea Walther <walthand@math55020.mathematik.hu-berlin.de>
+Date: Tue, 22 Sep 2020 11:58:09 +0200
+Subject: [PATCH] small change in configure.ac for swig module
+
+---
+ configure.ac | 6 ++++++
+ 1 file changed, 6 insertions(+)
+
+diff --git a/configure.ac b/configure.ac
+index b6aaeaa7..58380e55 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -509,6 +509,7 @@ if test x$tapedoc_values == xyes; then
+ AC_DEFINE(ADOLC_TAPE_DOC_VALUES,1,[ADOL-C tape_doc routine computes values])
+ fi
+
++if test x$adolc_python_support == xyes; then
+ AM_PATH_PYTHON([2.7],[python_found=yes],[python_found=no])
+ AC_PATH_PROG(SWIG, swig, [no])
+ AM_CONDITIONAL(PYTHONFOUND, [test x$python_found = xyes && test x$SWIG != xno])
+@@ -517,7 +518,12 @@ if test ${abs_top_srcdir} != ${abs_top_builddir} ; then
+ else
+ python_srcbase=''
+ fi
++else
++ AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support])
++ python_srcbase=''
++fi
+ AC_SUBST(python_srcbase)
++end
+ ###########################################################################
+ # COIN_PATCH_LIBTOOL_CYGWIN #
+ ###########################################################################
+From 0b3dd1747f90f68b17dc5f1bd3a5d898e3bc77fb Mon Sep 17 00:00:00 2001
+From: Andrea Walther <walthand@math55020.mathematik.hu-berlin.de>
+Date: Wed, 23 Sep 2020 08:54:54 +0200
+Subject: [PATCH] small fixes in configure.ac
+
+---
+ configure.ac | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index 58380e55..88671274 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -519,11 +519,11 @@ else
+ python_srcbase=''
+ fi
+ else
+- AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support])
++ AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support = xyes])
+ python_srcbase=''
+ fi
+ AC_SUBST(python_srcbase)
+-end
++
+ ###########################################################################
+ # COIN_PATCH_LIBTOOL_CYGWIN #
+ ###########################################################################
diff --git a/sci-libs/amd/amd-2.4.6.ebuild b/sci-libs/amd/amd-2.4.6.ebuild
index e63da81355a..669231443d0 100644
--- a/sci-libs/amd/amd-2.4.6.ebuild
+++ b/sci-libs/amd/amd-2.4.6.ebuild
@@ -6,7 +6,7 @@ EAPI=7
inherit fortran-2
DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="BSD"
diff --git a/sci-libs/brial/Manifest b/sci-libs/brial/Manifest
index f3d47c7a9b9..0132c582b5b 100644
--- a/sci-libs/brial/Manifest
+++ b/sci-libs/brial/Manifest
@@ -1 +1,2 @@
+DIST brial-1.2.10.tar.bz2 1229830 BLAKE2B a1cfe4fcd19824d04388bbab1130a9d07e5920fb05ea1686424f1e0193c6f5d29300bba66bdf7ac59665cbceed3f6ff84fbb5a95311858196a0fbdecda5a2cc7 SHA512 163d9f3703271f412d20ec165d713280d9b46c50b66eed0b15385c6d94569e0ea5d7e84c3b6715d51197e97be4062325551402c844f70235a4aa1cebc5e9d3a1
DIST brial-1.2.8.tar.bz2 1228732 BLAKE2B f9bdfc9416381f3436c555861806a7ea4680e706729b6de9c2b06ea2908090b87b745fe5ce2d94ba9d5832a78067e4848f8ef113b7d8dc22557b6d95b7dad707 SHA512 a94acba140d976dd070b5214c537fb3dba89fc2309addc566b8f0a031328f2d4c2bb3c38c2cb5565c7ff2ca0c5f7f56ca120899d15c768887d3b61a18b3e05be
diff --git a/sci-libs/brial/brial-1.2.10.ebuild b/sci-libs/brial/brial-1.2.10.ebuild
new file mode 100644
index 00000000000..e1831c017fc
--- /dev/null
+++ b/sci-libs/brial/brial-1.2.10.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="A C++ library for polynomials over boolean rings"
+HOMEPAGE="https://github.com/BRiAl/BRiAl"
+SRC_URI="https://github.com/BRiAl/BRiAl/releases/download/${PV}/${P}.tar.bz2"
+
+# The top-level license is GPL2+, but cudd/LICENSE is BSD.
+LICENSE="BSD GPL-2+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE="png static-libs"
+
+BDEPEND="virtual/pkgconfig"
+DEPEND="dev-libs/boost
+ sci-libs/m4ri[png=]"
+RDEPEND="${DEPEND}"
+
+pkg_setup(){
+ tc-export PKG_CONFIG
+}
+
+src_configure(){
+ # with-boost-libdir added to deal with some rather quirky setups
+ # see https://github.com/cschwan/sage-on-gentoo/issues/551
+ econf \
+ --with-boost="${EPREFIX}"/usr \
+ --with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
+ $(use_enable static-libs static)
+}
+
+src_install(){
+ default
+ find "${ED}" -name '*.la' -delete || die
+}
diff --git a/sci-libs/btf/btf-1.2.6.ebuild b/sci-libs/btf/btf-1.2.6.ebuild
index 74a9c5ca922..d2eaa752c27 100644
--- a/sci-libs/btf/btf-1.2.6.ebuild
+++ b/sci-libs/btf/btf-1.2.6.ebuild
@@ -4,7 +4,7 @@
EAPI=7
DESCRIPTION="Algorithm for matrix permutation into block triangular form"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="LGPL-2.1+"
diff --git a/sci-libs/camd/camd-2.4.6.ebuild b/sci-libs/camd/camd-2.4.6.ebuild
index 81a19dcab52..4ac1627a0b3 100644
--- a/sci-libs/camd/camd-2.4.6.ebuild
+++ b/sci-libs/camd/camd-2.4.6.ebuild
@@ -4,7 +4,7 @@
EAPI=7
DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="BSD"
diff --git a/sci-libs/cantera/cantera-2.4.0-r5.ebuild b/sci-libs/cantera/cantera-2.4.0-r5.ebuild
index ac2a89b4ddd..509fa30f426 100644
--- a/sci-libs/cantera/cantera-2.4.0-r5.ebuild
+++ b/sci-libs/cantera/cantera-2.4.0-r5.ebuild
@@ -16,7 +16,7 @@ SRC_URI="https://github.com/Cantera/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
IUSE="+cti fortran pch +python test"
RESTRICT="!test? ( test )"
diff --git a/sci-libs/cartopy/cartopy-0.18.0.ebuild b/sci-libs/cartopy/cartopy-0.18.0.ebuild
index bc9c5426b8f..d4fd00b90fc 100644
--- a/sci-libs/cartopy/cartopy-0.18.0.ebuild
+++ b/sci-libs/cartopy/cartopy-0.18.0.ebuild
@@ -24,7 +24,7 @@ RDEPEND="
${PYTHON_DEPS}
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/pyshp[${PYTHON_USEDEP}]
- sci-libs/Shapely[${PYTHON_USEDEP}]
+ sci-libs/shapely[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
diff --git a/sci-libs/ccolamd/ccolamd-2.9.6.ebuild b/sci-libs/ccolamd/ccolamd-2.9.6.ebuild
index e86d7e510aa..592a43771f5 100644
--- a/sci-libs/ccolamd/ccolamd-2.9.6.ebuild
+++ b/sci-libs/ccolamd/ccolamd-2.9.6.ebuild
@@ -4,7 +4,7 @@
EAPI=7
DESCRIPTION="Constrained Column approximate minimum degree ordering algorithm"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage//${P}.tar.bz2"
LICENSE="BSD"
diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest
index 52847a34dd0..650bab1aeb9 100644
--- a/sci-libs/cholmod/Manifest
+++ b/sci-libs/cholmod/Manifest
@@ -1,2 +1,3 @@
DIST cholmod-2.1.2.tar.bz2 656458 BLAKE2B 83a574ad7d3755428d8d732f3f60b07908b8315d73d5a3d3aaf9aac50b54590c532389dd90efc569e67639993095706eb546e72313b735e35af34a1fea398be2 SHA512 7aca97de4c60ff2d7a76a776be4c2d61243a159a51b9e147fa2480f2aaf61a5d966eb0f1cb57c0145510437f6c478fa30384b741709d0a02432b74ada3e78089
DIST cholmod-3.0.13.tar.bz2 696002 BLAKE2B 40a065fe1a3585897b3ca554a25fa80ffc68ac70798f2f803e34a231ec4f532d113a3d00ab7ab61f5eb02503a84e1459cdb7e96cb0b0d1dc6975ed3d533104fe SHA512 c6c80d099386bac27e385a1b8ee8941cd2fb4f2dcfcf302b4b17d6477ac9ee17ad8030aae9191f92576dfaeb521e2c98ec24e867281c2405e42f95580e14f0ab
+DIST cholmod-3.0.14.tar.bz2 696981 BLAKE2B 855927c18833235b3f0835bfba455d83957b9161c0ee885c2d31d126f0f473067f55bcf2cfa163c72efb5de573589ffa54b484a8cf89bc44c9dbf64d43fda5d9 SHA512 f8c12fc3c8787be38bca6c6f84a8279c1380fbe4fabbfba754235fdb042d7050bfb7b5a21ea87ef59dbd5184d28e8cb7667966c38f5dcad78fe8d47111896a3c
diff --git a/sci-libs/cholmod/cholmod-2.1.2.ebuild b/sci-libs/cholmod/cholmod-2.1.2.ebuild
index 0c7f5b86890..1a52bba26f0 100644
--- a/sci-libs/cholmod/cholmod-2.1.2.ebuild
+++ b/sci-libs/cholmod/cholmod-2.1.2.ebuild
@@ -6,7 +6,7 @@ EAPI=5
inherit autotools-utils multilib toolchain-funcs
DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.bz2"
LICENSE="minimal? ( LGPL-2.1 ) !minimal? ( GPL-2 )"
diff --git a/sci-libs/cholmod/cholmod-3.0.13.ebuild b/sci-libs/cholmod/cholmod-3.0.13.ebuild
index bf568d5872a..4fdcecff820 100644
--- a/sci-libs/cholmod/cholmod-3.0.13.ebuild
+++ b/sci-libs/cholmod/cholmod-3.0.13.ebuild
@@ -6,7 +6,7 @@ EAPI=7
inherit toolchain-funcs
DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )"
diff --git a/sci-libs/cholmod/cholmod-3.0.14.ebuild b/sci-libs/cholmod/cholmod-3.0.14.ebuild
new file mode 100644
index 00000000000..566f5c250c1
--- /dev/null
+++ b/sci-libs/cholmod/cholmod-3.0.14.ebuild
@@ -0,0 +1,71 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
+SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
+
+LICENSE="LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="cuda doc +lapack +matrixops +modify +partition"
+
+BDEPEND="virtual/pkgconfig
+ doc? ( virtual/latex-base )"
+DEPEND="
+ sci-libs/amd
+ sci-libs/colamd
+ cuda? (
+ dev-util/nvidia-cuda-toolkit
+ x11-drivers/nvidia-drivers
+ )
+ lapack? ( virtual/lapack )
+ partition? (
+ sci-libs/camd
+ sci-libs/ccolamd
+ || (
+ >=sci-libs/metis-5.1.0
+ sci-libs/parmetis
+ )
+ )"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+ local lapack_libs=no
+ local blas_libs=no
+ if use lapack; then
+ blas_libs=$($(tc-getPKG_CONFIG) --libs blas)
+ lapack_libs=$($(tc-getPKG_CONFIG) --libs lapack)
+ fi
+
+ local cudaconfargs=( $(use_with cuda) )
+ if use cuda ; then
+ cudaconfargs+=(
+ --with-cublas-libs="-L${EPREFIX}/opt/cuda/$(get_libdir) -lcublas"
+ --with-cublas-cflags="-I${EPREFIX}/opt/cuda/include"
+ )
+ fi
+
+ econf \
+ --disable-static \
+ --with-blas="${blas_libs}" \
+ --with-lapack="${lapack_libs}" \
+ $(use_with doc) \
+ $(use_with modify) \
+ $(use_with matrixops) \
+ $(use_with partition) \
+ $(use_with partition camd) \
+ $(use_with lapack supernodal) \
+ "${cudaconfargs[@]}"
+}
+
+src_install() {
+ default
+
+ # no static archives
+ find "${D}" -name '*.la' -delete || die
+}
diff --git a/sci-libs/coinor-cppad/Manifest b/sci-libs/coinor-cppad/Manifest
index 41262c6e383..674756df526 100644
--- a/sci-libs/coinor-cppad/Manifest
+++ b/sci-libs/coinor-cppad/Manifest
@@ -1,2 +1 @@
-DIST cppad-20140204.gpl.tgz 2189463 BLAKE2B 559162f45ebcb9cf11e0df5293430c5ce93c8993205c088639968ca52091a51e8d03a4e19a37d6c8e5949bc2b65f9eff7207d8e70f745e0c1748cb1dec963987 SHA512 0cead73e8d2e2da43ea22c003c0feccadefd2f66efbb58df45b79bff51181ad8646063fd053af8d377ce1732609c55175fd53c00142eb6635018878541f6d2ed
DIST cppad-20140519.gpl.tgz 2208236 BLAKE2B 5d53891ef3b458c3914f5d59f6656290be2811fbc84ca3f9bd253ce4620b1a4b00397e1beed694cdc5284a1f74441b68520b861c90d158c4eee11d1f8927b362 SHA512 8f47e545bc76f66edccb9ea083ddebcb5852fa1807d727b6e1f445ca74731e74f7614a1d33b48c6eafbc5129b319e513594b415ee838bdc634f9c00a6d9a22af
diff --git a/sci-libs/coinor-cppad/coinor-cppad-20140204.ebuild b/sci-libs/coinor-cppad/coinor-cppad-20140204.ebuild
deleted file mode 100644
index 77d4f5ebc89..00000000000
--- a/sci-libs/coinor-cppad/coinor-cppad-20140204.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools-utils multilib
-
-MYP=cppad-${PV}
-
-DESCRIPTION="COIN-OR C++ Algorithmic Differentiation"
-HOMEPAGE="https://projects.coin-or.org/CppAD/"
-SRC_URI="http://www.coin-or.org/download/source/CppAD/${MYP}.gpl.tgz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-
-RDEPEND="
- sci-libs/adolc:=
- sci-libs/ipopt:="
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- doc? ( app-doc/doxygen[dot] )"
-
-S="${WORKDIR}/${MYP}"
-
-src_configure() {
- local myeconfargs=( $(use doc Documentation) )
- autotools-utils_src_configure CXX_FLAGS="${CXXFLAGS}"
-}
-
-src_compile() {
- autotools-utils_src_compile
- if use doc; then
- ./build.sh doxygen || die
- fi
-}
-
-src_test() {
- autotools-utils_src_test check test
-}
-
-src_install() {
- use doc && HTML_DOC=( "${BUILD_DIR}"/doxydocs/html/. )
- autotools-utils_src_install
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- doins -r example/*
- fi
-}
diff --git a/sci-libs/coinor-cppad/coinor-cppad-20140519.ebuild b/sci-libs/coinor-cppad/coinor-cppad-20140519.ebuild
deleted file mode 100644
index 8294efcbd21..00000000000
--- a/sci-libs/coinor-cppad/coinor-cppad-20140519.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools-utils multilib
-
-MYP=cppad-${PV}
-
-DESCRIPTION="COIN-OR C++ Algorithmic Differentiation"
-HOMEPAGE="https://projects.coin-or.org/CppAD/"
-SRC_URI="http://www.coin-or.org/download/source/CppAD/${MYP}.gpl.tgz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-
-RDEPEND="
- sci-libs/adolc:0=
- sci-libs/ipopt:0="
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- doc? ( app-doc/doxygen[dot] )"
-
-S="${WORKDIR}/${MYP}"
-
-src_configure() {
- local myeconfargs=( $(use doc Documentation) )
- autotools-utils_src_configure CXX_FLAGS="${CXXFLAGS}"
-}
-
-src_compile() {
- autotools-utils_src_compile
- if use doc; then
- ./build.sh doxygen || die
- fi
-}
-
-src_test() {
- autotools-utils_src_test check test
-}
-
-src_install() {
- use doc && HTML_DOC=( "${BUILD_DIR}"/doxydocs/html/. )
- autotools-utils_src_install
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- doins -r example/*
- fi
-}
diff --git a/sci-libs/colamd/colamd-2.9.6.ebuild b/sci-libs/colamd/colamd-2.9.6.ebuild
index a656a74f573..6a5198706ed 100644
--- a/sci-libs/colamd/colamd-2.9.6.ebuild
+++ b/sci-libs/colamd/colamd-2.9.6.ebuild
@@ -4,7 +4,7 @@
EAPI=7
DESCRIPTION="Column approximate minimum degree ordering algorithm"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="BSD"
diff --git a/sci-libs/colpack/colpack-1.0.10.ebuild b/sci-libs/colpack/colpack-1.0.10.ebuild
index f7a56facc52..9ba8c09a081 100644
--- a/sci-libs/colpack/colpack-1.0.10.ebuild
+++ b/sci-libs/colpack/colpack-1.0.10.ebuild
@@ -14,7 +14,7 @@ SRC_URI="https://github.com/CSCsw/${MYPN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
SLOT="0"
IUSE="openmp static-libs"
-KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux"
RDEPEND=""
DEPEND="${RDEPEND}"
diff --git a/sci-libs/cxsparse/cxsparse-3.2.0.ebuild b/sci-libs/cxsparse/cxsparse-3.2.0.ebuild
index 1f31b3ad40c..e72298d97b6 100644
--- a/sci-libs/cxsparse/cxsparse-3.2.0.ebuild
+++ b/sci-libs/cxsparse/cxsparse-3.2.0.ebuild
@@ -6,7 +6,7 @@ EAPI=7
inherit multilib-minimal
DESCRIPTION="Extended sparse matrix package"
-HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
+HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html"
SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2"
LICENSE="LGPL-2.1+"
diff --git a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
index 240ca02f96f..ce2042496c1 100644
--- a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
+++ b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
@@ -10,7 +10,7 @@ HOMEPAGE="https://dicom.offis.de/dcmtk.php.en"
SRC_URI="https://dicom.offis.de/download/dcmtk/release/${P}.tar.gz"
LICENSE="OFFIS"
-KEYWORDS="~amd64 ~arm ~x86"
+KEYWORDS="~amd64 ~arm ~ppc64 ~x86"
SLOT="0"
IUSE="doc png ssl tcpd tiff +threads xml zlib"
diff --git a/sci-libs/fftw/Manifest b/sci-libs/fftw/Manifest
index 6eebda50fbe..e65017032f3 100644
--- a/sci-libs/fftw/Manifest
+++ b/sci-libs/fftw/Manifest
@@ -1,3 +1,2 @@
DIST fftw-2.1.5.tar.gz 1256888 BLAKE2B 61e2eed91459479ab893a423c1a6f38dd7e9637e0466fa0a59fccfa2cec930e8870a5febfccfacfe44e876e40534c34e05dc62b8e7bf188b43fe3a65c6a7bdba SHA512 8724a7f66aa19b271aa0ffb0e3762919f08082ac4400f52d11b50aef9b9d23a7d4fc5d6b2eae0ac166e2bb30a4d38a52c878e8bf8e24aba01ab1c3ddf5ebec15
-DIST fftw-3.3.6-pl2.tar.gz 4185261 BLAKE2B e2f877c13ab441ddf1ae731cf3ebdc5d1565f8216f497694ea1fccc43b6a53fc02d39e17f97c56d15d03410b2005e6c693cb4b639399aac0f6ebdc63fed32d2e SHA512 e130309856752a1555b6d151c4d0ce9eb4b2c208fff7e3e89282ca8ef6104718f865cbb5e9c4af4367b3615b69b0d50fd001a26d74fd5324ff2faabe14fe3472
DIST fftw-3.3.8.tar.gz 4110137 BLAKE2B 555ac1401a5a41b7661afd0288c2353398f2c9b73695742459079ebf050dfa4c371484ea65324fd4b7d374f70d88a5942ff8abaad167b0d44d485bf1dc9e208c SHA512 ab918b742a7c7dcb56390a0a0014f517a6dff9a2e4b4591060deeb2c652bf3c6868aa74559a422a276b853289b4b701bdcbd3d4d8c08943acf29167a7be81a38
diff --git a/sci-libs/fftw/fftw-3.3.6_p2.ebuild b/sci-libs/fftw/fftw-3.3.6_p2.ebuild
deleted file mode 100644
index 3d8aa290235..00000000000
--- a/sci-libs/fftw/fftw-3.3.6_p2.ebuild
+++ /dev/null
@@ -1,181 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-FORTRAN_NEEDED=fortran
-
-inherit flag-o-matic fortran-2 toolchain-funcs versionator multibuild multilib-minimal
-
-DESCRIPTION="Fast C library for the Discrete Fourier Transform"
-HOMEPAGE="http://www.fftw.org/"
-
-MY_P=${PN}-${PV/_p/-pl}
-
-if [[ ${PV} = *9999 ]]; then
- inherit autotools git-r3
- EGIT_REPO_URI="https://github.com/FFTW/fftw3.git"
-else
- SRC_URI="http://www.fftw.org/${PN}-${PV/_p/-pl}.tar.gz"
- KEYWORDS="~alpha amd64 arm ~arm64 hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos"
-fi
-
-LICENSE="GPL-2+"
-SLOT="3.0/3"
-IUSE="altivec cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_fma3 cpu_flags_x86_fma4 cpu_flags_x86_sse cpu_flags_x86_sse2 doc fortran mpi neon openmp quad static-libs test threads zbus"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( >=virtual/mpi-2.0-r4[${MULTILIB_USEDEP}] )"
-DEPEND="${RDEPEND}
- test? ( dev-lang/perl )"
-
-S=${WORKDIR}/${MY_P}
-HTML_DOCS=( doc/html/. )
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- MULTIBUILD_VARIANTS=( single double longdouble )
- if use quad; then
- if ! tc-is-gcc; then
- ewarn "quad precision only available for gcc >= 4.6"
- die "need quad precision capable gcc"
- fi
- MULTIBUILD_VARIANTS+=( quad )
- fi
-}
-
-src_prepare() {
- default
-
- # fix info file for category directory
- if [[ ${PV} = *9999 ]]; then
- sed -i -e
- 's/Texinfo documentation system/Libraries/' \
- doc/fftw3."info" || die "failed to fix info file"
-
- eautoreconf
- fi
-}
-
-multilib_src_configure() {
- # jlec reported USE=quad on abi_x86_32 has too few registers
- # stub Makefiles
- if [[ ${MULTILIB_ABI_FLAG} == abi_x86_32 && ${MULTIBUILD_ID} == quad-* ]]; then
- mkdir -p "${BUILD_DIR}/tests" || die
- echo "all: ;" > "${BUILD_DIR}/Makefile" || die
- echo "install: ;" >> "${BUILD_DIR}/Makefile" || die
- echo "smallcheck: ;" > "${BUILD_DIR}/tests/Makefile" || die
- return 0
- fi
-
- local myconf=(
- --enable-shared
- $(use_enable static-libs static)
- $(use_enable "cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4)" fma)
- $(use_enable fortran)
- $(use_enable zbus mips-zbus-timer)
- $(use_enable threads)
- $(use_enable openmp)
- )
- case "${MULTIBUILD_ID}" in
- single-*)
- # altivec, sse, single-paired only work for single
- myconf+=(
- --enable-single
- $(use_enable altivec)
- $(use_enable cpu_flags_x86_avx avx)
- $(use_enable cpu_flags_x86_avx2 avx2)
- $(use_enable cpu_flags_x86_sse sse)
- $(use_enable cpu_flags_x86_sse2 sse2)
- $(use_enable neon)
- $(use_enable mpi)
- )
- ;;
-
- double-*)
- myconf+=(
- $(use_enable cpu_flags_x86_avx avx)
- $(use_enable cpu_flags_x86_avx2 avx2)
- $(use_enable cpu_flags_x86_sse2 sse2)
- $(use_enable mpi)
- )
- ;;
-
- longdouble-*)
- myconf+=(
- --enable-long-double
- $(use_enable mpi)
- )
- ;;
-
- quad-*)
- # quad does not support mpi
- myconf+=(
- --enable-quad-precision
- )
- ;;
-
- *)
- die "${MULTIBUILD_ID%-*} precision not implemented in this ebuild"
- ;;
- esac
-
- ECONF_SOURCE="${S}" econf "${myconf[@]}" MPICC="$(tc-getCC) -lmpi"
-}
-
-src_configure() {
- multibuild_foreach_variant multilib-minimal_src_configure
-}
-
-src_compile() {
- multibuild_foreach_variant multilib-minimal_src_compile
-}
-
-multilib_src_test() {
- emake -C tests smallcheck
-}
-
-src_test() {
- # We want this to be a reasonably quick test, but that is still hard...
- ewarn "This test series will take 30 minutes on a modern 2.5Ghz machine"
- # Do not increase the number of threads, it will not help your performance
- # local testbase="perl check.pl --nthreads=1 --estimate"
- # ${testbase} -${p}d || die "Failure: $n"
-
- multibuild_foreach_variant multilib-minimal_src_test
-}
-
-src_install() {
- multibuild_foreach_variant multilib-minimal_src_install
- dodoc CONVENTIONS
-
- if use doc; then
- dodoc doc/*.pdf
- docinto faq
- dodoc -r doc/FAQ/fftw-faq.html/.
- else
- rm -r "${ED%/}"/usr/share/doc/${PF}/html || die
- fi
-
- local x
- for x in "${ED%/}"/usr/lib*/pkgconfig/*.pc; do
- local u
- for u in $(usev mpi) $(usev threads) $(usex openmp omp ""); do
- sed -e "s|-lfftw3[flq]\?|&_${u} &|" "$x" > "${x%.pc}_${u}.pc" || die
- done
- done
-
- # fftw uses pkg-config to record its private dependencies
- find "${D}" -name '*.la' -delete || die
-}
diff --git a/sci-libs/fftw/fftw-3.3.8.ebuild b/sci-libs/fftw/fftw-3.3.8.ebuild
deleted file mode 100644
index e54af4af14b..00000000000
--- a/sci-libs/fftw/fftw-3.3.8.ebuild
+++ /dev/null
@@ -1,182 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-FORTRAN_NEEDED=fortran
-
-inherit flag-o-matic fortran-2 multibuild multilib-minimal toolchain-funcs
-
-DESCRIPTION="Fast C library for the Discrete Fourier Transform"
-HOMEPAGE="http://www.fftw.org/"
-
-MY_P=${PN}-${PV/_p/-pl}
-
-if [[ ${PV} = *9999 ]]; then
- inherit autotools git-r3
- EGIT_REPO_URI="https://github.com/FFTW/fftw3.git"
-else
- SRC_URI="http://www.fftw.org/${PN}-${PV/_p/-pl}.tar.gz"
- KEYWORDS="~alpha ~amd64 ~arm arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos"
-fi
-
-LICENSE="GPL-2+"
-SLOT="3.0/3"
-IUSE="cpu_flags_ppc_altivec cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_fma3 cpu_flags_x86_fma4 cpu_flags_x86_sse cpu_flags_x86_sse2 doc fortran mpi neon openmp quad static-libs test threads zbus"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- mpi? ( >=virtual/mpi-2.0-r4[${MULTILIB_USEDEP}] )"
-DEPEND="${RDEPEND}
- quad? ( sys-devel/gcc[fortran] )
- test? ( dev-lang/perl )"
-
-S=${WORKDIR}/${MY_P}
-HTML_DOCS=( doc/html/. )
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- MULTIBUILD_VARIANTS=( single double longdouble )
- if use quad; then
- if ! tc-is-gcc; then
- ewarn "quad precision only available for gcc >= 4.6"
- die "need quad precision capable gcc"
- fi
- MULTIBUILD_VARIANTS+=( quad )
- fi
-}
-
-src_prepare() {
- default
-
- # fix info file for category directory
- if [[ ${PV} = *9999 ]]; then
- sed -i -e
- 's/Texinfo documentation system/Libraries/' \
- doc/fftw3."info" || die "failed to fix info file"
-
- eautoreconf
- fi
-}
-
-multilib_src_configure() {
- # jlec reported USE=quad on abi_x86_32 has too few registers
- # stub Makefiles
- if [[ ${MULTILIB_ABI_FLAG} == abi_x86_32 && ${MULTIBUILD_ID} == quad-* ]]; then
- mkdir -p "${BUILD_DIR}/tests" || die
- echo "all: ;" > "${BUILD_DIR}/Makefile" || die
- echo "install: ;" >> "${BUILD_DIR}/Makefile" || die
- echo "smallcheck: ;" > "${BUILD_DIR}/tests/Makefile" || die
- return 0
- fi
-
- local myconf=(
- --enable-shared
- $(use_enable static-libs static)
- $(use_enable "cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4)" fma)
- $(use_enable fortran)
- $(use_enable zbus mips-zbus-timer)
- $(use_enable threads)
- $(use_enable openmp)
- )
- case "${MULTIBUILD_ID}" in
- single-*)
- # altivec, sse, single-paired only work for single
- myconf+=(
- --enable-single
- $(use_enable cpu_flags_ppc_altivec altivec)
- $(use_enable cpu_flags_x86_avx avx)
- $(use_enable cpu_flags_x86_avx2 avx2)
- $(use_enable cpu_flags_x86_sse sse)
- $(use_enable cpu_flags_x86_sse2 sse2)
- $(use_enable neon)
- $(use_enable mpi)
- )
- ;;
-
- double-*)
- myconf+=(
- $(use_enable cpu_flags_x86_avx avx)
- $(use_enable cpu_flags_x86_avx2 avx2)
- $(use_enable cpu_flags_x86_sse2 sse2)
- $(use_enable mpi)
- )
- ;;
-
- longdouble-*)
- myconf+=(
- --enable-long-double
- $(use_enable mpi)
- )
- ;;
-
- quad-*)
- # quad does not support mpi
- myconf+=(
- --enable-quad-precision
- )
- ;;
-
- *)
- die "${MULTIBUILD_ID%-*} precision not implemented in this ebuild"
- ;;
- esac
-
- ECONF_SOURCE="${S}" econf "${myconf[@]}" MPICC="$(tc-getCC) -lmpi"
-}
-
-src_configure() {
- multibuild_foreach_variant multilib-minimal_src_configure
-}
-
-src_compile() {
- multibuild_foreach_variant multilib-minimal_src_compile
-}
-
-multilib_src_test() {
- emake -C tests smallcheck
-}
-
-src_test() {
- # We want this to be a reasonably quick test, but that is still hard...
- ewarn "This test series will take 30 minutes on a modern 2.5Ghz machine"
- # Do not increase the number of threads, it will not help your performance
- # local testbase="perl check.pl --nthreads=1 --estimate"
- # ${testbase} -${p}d || die "Failure: $n"
-
- multibuild_foreach_variant multilib-minimal_src_test
-}
-
-src_install() {
- multibuild_foreach_variant multilib-minimal_src_install
- dodoc CONVENTIONS
-
- if use doc; then
- dodoc doc/*.pdf
- docinto faq
- dodoc -r doc/FAQ/fftw-faq.html/.
- else
- rm -r "${ED%/}"/usr/share/doc/${PF}/html || die
- fi
-
- local x
- for x in "${ED%/}"/usr/lib*/pkgconfig/*.pc; do
- local u
- for u in $(usev mpi) $(usev threads) $(usex openmp omp ""); do
- sed -e "s|-lfftw3[flq]\?|&_${u} &|" "$x" > "${x%.pc}_${u}.pc" || die
- done
- done
-
- # fftw uses pkg-config to record its private dependencies
- find "${D}" -name '*.la' -delete || die
-}
diff --git a/sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0.ebuild b/sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0-r1.ebuild
index f19f9dec6f4..1441ea0a5da 100644
--- a/sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0.ebuild
+++ b/sci-libs/ignition-fuel-tools/ignition-fuel-tools-4.1.0-r1.ebuild
@@ -26,6 +26,7 @@ RDEPEND="
dev-libs/libzip:=
sci-libs/ignition-common:3=
net-libs/ignition-msgs:5=
+ dev-libs/protobuf:=
"
#igncurl
DEPEND="${RDEPEND}
diff --git a/sci-libs/keras-applications/keras-applications-1.0.8-r1.ebuild b/sci-libs/keras-applications/keras-applications-1.0.8-r1.ebuild
new file mode 100644
index 00000000000..78bc7b1dc8d
--- /dev/null
+++ b/sci-libs/keras-applications/keras-applications-1.0.8-r1.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+inherit distutils-r1
+
+DESCRIPTION="Keras deep learning library reference implementations of deep learning models"
+HOMEPAGE="https://keras.io/applications/"
+SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+ dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0-r1.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0-r1.ebuild
new file mode 100644
index 00000000000..3a96094ba07
--- /dev/null
+++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0-r1.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+inherit distutils-r1
+
+DESCRIPTION="Easy data preprocessing and data augmentation for deep learning models"
+HOMEPAGE="https://keras.io/"
+SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+ dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/lapack/lapack-3.9.0.ebuild b/sci-libs/lapack/lapack-3.9.0.ebuild
index cc1fc963b7c..87c344ba13b 100644
--- a/sci-libs/lapack/lapack-3.9.0.ebuild
+++ b/sci-libs/lapack/lapack-3.9.0.ebuild
@@ -30,6 +30,10 @@ RDEPEND="
DEPEND="${RDEPEND}
virtual/pkgconfig"
+PATCHES=(
+ "${FILESDIR}/${PN}-3.9.0-build-tests.patch"
+)
+
src_configure() {
local mycmakeargs=(
-DCBLAS=ON
diff --git a/sci-libs/libecpint/Manifest b/sci-libs/libecpint/Manifest
new file mode 100644
index 00000000000..fdaecf16277
--- /dev/null
+++ b/sci-libs/libecpint/Manifest
@@ -0,0 +1 @@
+DIST libecpint-1.0.2.tar.gz 1161801 BLAKE2B 98b9264055bc9dab86ad54921f65380bca6cf96a2e6000bc061998367b3eeaffe122fa03ed83c75deb568ee7cce49ff85b97909bd57ae057a189025421dee82e SHA512 adf9394628a39d1e07e4f02bf4fad1c3d19cbfd9a9aa123d6151dddb78c7ef2c2cab07bc7060dba1d5114756c03964c2bd237c82203a1efb38b9facaaa24c74a
diff --git a/sci-libs/libecpint/libecpint-1.0.2.ebuild b/sci-libs/libecpint/libecpint-1.0.2.ebuild
new file mode 100644
index 00000000000..40c0946f299
--- /dev/null
+++ b/sci-libs/libecpint/libecpint-1.0.2.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake
+
+DESCRIPTION="Efficient evaluation of integrals over ab initio effective core potentials"
+HOMEPAGE="https://github.com/robashaw/libecpint"
+SRC_URI="https://github.com/robashaw/libecpint/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="0"
+LICENSE="MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+ dev-libs/pugixml
+ test? ( dev-cpp/gtest )"
+
+src_configure() {
+ mycmakeargs=(
+ -DLIBECPINT_BUILD_TESTS=$(usex test)
+ )
+ cmake_src_configure
+}
diff --git a/sci-libs/libecpint/metadata.xml b/sci-libs/libecpint/metadata.xml
new file mode 100644
index 00000000000..0802ee79be8
--- /dev/null
+++ b/sci-libs/libecpint/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ Libecpint is a C++ library for the efficient evaluation of integrals over ab
+ initio effective core potentials, using a mixture of generated, recursive
+ code and Gauss-Chebyshev quadrature. It is designed to be standalone and
+ generic.
+</longdescription>
+ <upstream>
+ <remote-id type="github">robashaw/libecpint</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-libs/libexcelformat/libexcelformat-101016.ebuild b/sci-libs/libexcelformat/libexcelformat-101016.ebuild
index 6b346b4f29f..c3014bcdc05 100644
--- a/sci-libs/libexcelformat/libexcelformat-101016.ebuild
+++ b/sci-libs/libexcelformat/libexcelformat-101016.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -6,7 +6,7 @@ EAPI=6
inherit toolchain-funcs
DESCRIPTION="reading, writing, and editing of XLS (BIFF8 format) files using C++"
-HOMEPAGE="http://www.codeproject.com/KB/office/ExcelFormat.aspx"
+HOMEPAGE="https://www.codeproject.com/Articles/42504/ExcelFormat-Library"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
SLOT="0"
diff --git a/sci-libs/libh2o/libh2o-0.2.1-r1.ebuild b/sci-libs/libh2o/libh2o-0.2.1-r1.ebuild
index 2b52c92af38..9ef03933234 100644
--- a/sci-libs/libh2o/libh2o-0.2.1-r1.ebuild
+++ b/sci-libs/libh2o/libh2o-0.2.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -12,12 +12,12 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug static-libs"
-DEPEND="virtual/pkgconfig"
+RDEPEND="!www-servers/h2o"
+BDEPEND="virtual/pkgconfig"
src_configure() {
local myconf=(
$(use_enable debug)
- $(use_enable static-libs static)
)
econf "${myconf[@]}"
diff --git a/sci-libs/libh2o/libh2o-9999.ebuild b/sci-libs/libh2o/libh2o-9999.ebuild
deleted file mode 100644
index 731e477a391..00000000000
--- a/sci-libs/libh2o/libh2o-9999.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools git-r3
-
-DESCRIPTION="Library of routines for IF97 water & steam properties"
-HOMEPAGE="https://github.com/mgorny/libh2o/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/mgorny/libh2o.git"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-IUSE="debug static-libs"
-
-DEPEND="virtual/pkgconfig"
-
-src_prepare() {
- default
- eautoreconf
-}
-
-src_configure() {
- local myconf=(
- $(use_enable debug)
- $(use_enable static-libs static)
- )
-
- econf "${myconf[@]}"
-}
-
-src_install() {
- default
- find "${D}" -name '*.la' -delete || die
-}
diff --git a/sci-libs/libh2oxx/libh2oxx-0.2-r1.ebuild b/sci-libs/libh2oxx/libh2oxx-0.2-r1.ebuild
index 7dcb50db90f..041756e0f45 100644
--- a/sci-libs/libh2oxx/libh2oxx-0.2-r1.ebuild
+++ b/sci-libs/libh2oxx/libh2oxx-0.2-r1.ebuild
@@ -10,7 +10,7 @@ SRC_URI="https://github.com/mgorny/libh2oxx/releases/download/${P}/${P}.tar.bz2"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE="debug static-libs"
+IUSE="debug"
RDEPEND=">=sci-libs/libh2o-0.2:0="
DEPEND="${RDEPEND}"
@@ -18,7 +18,6 @@ DEPEND="${RDEPEND}"
src_configure() {
local myconf=(
$(use_enable debug)
- $(use_enable static-libs static)
)
econf "${myconf[@]}"
diff --git a/sci-libs/libh2oxx/libh2oxx-9999.ebuild b/sci-libs/libh2oxx/libh2oxx-9999.ebuild
deleted file mode 100644
index a9e3eef7129..00000000000
--- a/sci-libs/libh2oxx/libh2oxx-9999.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools git-r3
-
-DESCRIPTION="C++ bindings for libh2o"
-HOMEPAGE="https://github.com/mgorny/libh2oxx/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/mgorny/libh2oxx.git"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-IUSE="debug static-libs"
-
-RDEPEND=">=sci-libs/libh2o-0.2:0="
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- default
- eautoreconf
-}
-
-src_configure() {
- local myconf=(
- $(use_enable debug)
- $(use_enable static-libs static)
- )
-
- econf "${myconf[@]}"
-}
-
-src_install() {
- default
- find "${D}" -name '*.la' -delete || die
-}
diff --git a/sci-libs/libint/Manifest b/sci-libs/libint/Manifest
index 072822675c1..f9aba9659d8 100644
--- a/sci-libs/libint/Manifest
+++ b/sci-libs/libint/Manifest
@@ -1,2 +1,2 @@
DIST libint-1.1.6.tar.gz 256404 BLAKE2B c754e25f0c3bc6c52eb434beafd2cb794a2e715003ee9409d76e8ae06e0ce19a42a9331ad4db9be2745d6820e7248210d10b4c004146e99192fd16fd2c31966d SHA512 cb39d73e89431c324e32d4a71593fe913c7ae2132677d4600e63ce1ed99e8e431758f0aa3d130991da841e98a1064fa931eb0e82dbe80af4c0ece10ee3a4f2d7
-DIST libint-2.0.5.tar.gz 3209528 BLAKE2B 348dd7e2bf17504e19522f053e4dc25936702e7feea1342954af1fc3656711b38b70676c0ac574ee37bb74b37ca30b323d29d156c90711a127b7404b0ca8d5cd SHA512 d7717a6337b73645dcb77d3c0731df17884b4c662b0d52061b7b80ac0ebd9de344e6c301294f714db09e7b6e3dff5b4b6958ef06122303df52d0ebb6a011cf24
+DIST libint-2.6.0.tar.gz 24743255 BLAKE2B 3ab7baba012828485c6c8425bce100e1ab50d2a3c8443ea2ef5cf173d58d8aa211a07e837b10a7f89d7e57f2e15b9384060bbf7b9885f32e9426525e65e15960 SHA512 56343c64b0dfb829702f4bb2fe14a04ad063acd7cb8b5a21cd1a45a830944c1ee98c888c9a28d6746b1bc17459aefcfb0aafe6ef310bfe554056212ad19e43ef
diff --git a/sci-libs/libint/libint-2.6.0-r2.ebuild b/sci-libs/libint/libint-2.6.0-r2.ebuild
new file mode 100644
index 00000000000..0297d5bfea8
--- /dev/null
+++ b/sci-libs/libint/libint-2.6.0-r2.ebuild
@@ -0,0 +1,62 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit autotools eutils fortran-2 toolchain-funcs
+
+DESCRIPTION="Matrix elements (integrals) evaluation over Cartesian Gaussian functions"
+HOMEPAGE="https://github.com/evaleev/libint"
+SRC_URI="https://github.com/evaleev/libint/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="2"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs doc"
+
+DEPEND="
+ dev-libs/boost
+ dev-libs/gmp[cxx]
+ doc? (
+ dev-texlive/texlive-latex
+ dev-tex/latex2html
+ )"
+
+src_prepare() {
+ default
+ eautoreconf
+}
+
+src_configure() {
+ econf \
+ --with-cxx=$(tc-getCXX) \
+ --with-cxx-optflags="${CXXFLAGS}" \
+ --with-cxxgen-optflags="${CXXFLAGS}" \
+ --with-cxxdepend=$(tc-getCXX) \
+ --with-ranlib=$(tc-getRANLIB) \
+ --with-ar=$(tc-getAR) \
+ --with-ld=$(tc-getLD) \
+ --enable-eri=2 --enable-eri3=2 --enable-eri2=2 \
+ --with-eri-max-am=7,5,4 --with-eri-opt-am=3 \
+ --with-eri3-max-am=7 --with-eri2-max-am=7 \
+ --with-g12-max-am=5 --with-g12-opt-am=3 \
+ --with-g12dkh-max-am=5 --with-g12dkh-opt-am=3 \
+ --enable-contracted-ints \
+ $(use_enable static-libs static)
+}
+
+src_compile() {
+ emake LDFLAGS="${LDFLAGS}"
+
+ use doc && emake html pdf
+}
+
+src_install() {
+ default
+
+ if use doc; then
+ DOCS=( doc/progman/progman.pdf )
+ HTML_DOCS=( doc/progman/progman/*.{html,png,css} )
+ einstalldocs
+ fi
+}
diff --git a/sci-libs/libint/libint-2.0.5.ebuild b/sci-libs/libint/libint-2.6.0.ebuild
index 625e42a700c..774bdc758b4 100644
--- a/sci-libs/libint/libint-2.0.5.ebuild
+++ b/sci-libs/libint/libint-2.6.0.ebuild
@@ -1,25 +1,19 @@
# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-AUTOTOOLS_AUTORECONF=true
-
-inherit autotools-utils eutils fortran-2 toolchain-funcs versionator
-
-MY_PV="$(replace_all_version_separators -)"
+inherit autotools eutils fortran-2 toolchain-funcs
DESCRIPTION="Matrix elements (integrals) evaluation over Cartesian Gaussian functions"
HOMEPAGE="https://github.com/evaleev/libint"
-SRC_URI="https://github.com/evaleev/libint/archive/release-2-0-5.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/evaleev/libint/archive/v${PV}.tar.gz -> ${P}.tar.gz"
SLOT="2"
LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="static-libs doc"
-S="${WORKDIR}/${PN}-release-${MY_PV}"
-
DEPEND="
dev-libs/boost
dev-libs/gmp[cxx]
@@ -28,19 +22,21 @@ DEPEND="
dev-tex/latex2html
)"
-AUTOTOOLS_IN_SOURCE_BUILD=1
+src_prepare() {
+ default
+ eautoreconf
+}
src_configure() {
- local myeconfargs=(
- --with-cxx=$(tc-getCXX)
- --with-cxx-optflags="${CXXFLAGS}"
- --with-cxxgen-optflags="${CXXFLAGS}"
- --with-cxxdepend=$(tc-getCXX)
- --with-ranlib=$(tc-getRANLIB)
- --with-ar=$(tc-getAR)
- --with-ld=$(tc-getLD)
- )
- autotools-utils_src_configure
+ econf \
+ --with-cxx=$(tc-getCXX) \
+ --with-cxx-optflags="${CXXFLAGS}" \
+ --with-cxxgen-optflags="${CXXFLAGS}" \
+ --with-cxxdepend=$(tc-getCXX) \
+ --with-ranlib=$(tc-getRANLIB) \
+ --with-ar=$(tc-getAR) \
+ --with-ld=$(tc-getLD) \
+ $(use_enable static-libs static)
}
src_compile() {
@@ -50,7 +46,7 @@ src_compile() {
}
src_install() {
- einstall
+ default
if use doc; then
DOCS=( doc/progman/progman.pdf )
diff --git a/sci-libs/libsvm/Manifest b/sci-libs/libsvm/Manifest
index 4d7184371f7..b4b1cfca537 100644
--- a/sci-libs/libsvm/Manifest
+++ b/sci-libs/libsvm/Manifest
@@ -1,2 +1 @@
-DIST libsvm-3.22.tar.gz 850563 BLAKE2B 824451dd2cafb7f2546d510d2c516dee67c27e586d5b16557a3c23e0c372cd577af5a322e24f70df6cda66e0a58f2e4d70017e6155a1d211ad3c728f840bfa2b SHA512 80a22fd2c2a82f70b8279fa5d8c5a2838b10ee439cf6d725816d608f8e45990ba1780ae6750cad78b25c1c18daf2c2315b342b9e329affbd5729d6fd7da87f7a
DIST libsvm-3.24.tar.gz 876441 BLAKE2B 6781804ba9706de5ad363bcbda20f2ec181cc4ee9613c9e7429f03872f7a03b04859df2ec00692d9de3ea237d1e478435a4d4db3ce7e5292689a2eab26a1fe46 SHA512 ff3c39bc84291bfb707151d7b8b6fb2eece937afa769cb8ee579d00ee4c30e943d476cd7bb18851d482c9bed89cf94fb3fd8abca4d47253360e12e9406f2f24b
diff --git a/sci-libs/libsvm/libsvm-3.22.ebuild b/sci-libs/libsvm/libsvm-3.22.ebuild
deleted file mode 100644
index a84738b3fae..00000000000
--- a/sci-libs/libsvm/libsvm-3.22.ebuild
+++ /dev/null
@@ -1,117 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_6 )
-
-inherit flag-o-matic java-pkg-opt-2 python-r1 toolchain-funcs
-
-DESCRIPTION="Library for Support Vector Machines"
-HOMEPAGE="https://www.csie.ntu.edu.tw/~cjlin/libsvm/"
-SRC_URI="https://www.csie.ntu.edu.tw/~cjlin/libsvm/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0/2"
-KEYWORDS="amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux"
-IUSE="java openmp python tools"
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-DEPEND="
- java? ( >=virtual/jdk-1.4 )
- python? ( ${PYTHON_DEPS} )"
-RDEPEND="
- java? ( >=virtual/jre-1.4 )
- python? ( ${PYTHON_DEPS} )
- tools? ( sci-visualization/gnuplot )"
-
-PATCHES=(
- "${FILESDIR}/3.11-openmp.patch"
- "${FILESDIR}/3.14-makefile.patch"
-)
-
-pkg_setup() {
- if use openmp; then
- if ! tc-has-openmp; then
- ewarn "OpenMP is not supported by your currently selected compiler"
-
- if tc-is-clang; then
- ewarn "OpenMP support in sys-devel/clang is provided by sys-libs/libomp,"
- ewarn "which you will need to build ${CATEGORY}/${PN} for USE=\"openmp\""
- fi
-
- die "need openmp capable compiler"
- fi
-
- append-cflags -fopenmp
- append-cxxflags -fopenmp
- append-cppflags -DOPENMP
- fi
-}
-
-src_prepare() {
- default
-
- sed -i -e "s@\.\./@${EPREFIX}/usr/bin/@g" tools/*.py \
- || die "Failed to fix paths in python files"
- sed -i -e "s|./grid.py|${EPREFIX}/usr/bin/svm-grid|g" tools/*.py \
- || die "Failed to fix paths for svm-grid"
- sed -i -e 's/grid.py/svm-grid/g' tools/grid.py \
- || die "Failed to rename grid.py to svm-grid"
-
- if use java; then
- local JAVAC_FLAGS="$(java-pkg_javac-args)"
- sed -i \
- -e "s/JAVAC_FLAGS =/JAVAC_FLAGS=${JAVAC_FLAGS}/g" \
- java/Makefile || die "Failed to fix java makefile"
- fi
- tc-export CXX CC
-}
-
-src_compile() {
- default
- use java && emake -C java
-}
-
-src_install() {
- dobin svm-train svm-predict svm-scale
- dolib.so *.so*
- doheader svm.h
-
- DOCS=( README )
-
- if use tools; then
- local t
- for t in tools/*.py; do
- python_foreach_impl python_newscript ${t} svm-$(basename ${t} .py)
- done
-
- mv tools/README{,.tools} || die
- DOCS+=( tools/README.tools )
-
- insinto /usr/share/doc/${PF}/examples
- docompress -x /usr/share/doc/${PF}/examples
- doins heart_scale
- doins -r svm-toy
- fi
-
- if use python ; then
- installation() {
- touch python/__init__.py || die
- python_moduleinto libsvm
- python_domodule python/*.py
- }
- python_foreach_impl installation
-
- mv python/README{,.python} || die
- DOCS+=( python/README.python )
- fi
-
- HTML_DOCS=( FAQ.html )
- if use java; then
- java-pkg_dojar java/libsvm.jar
- HTML_DOCS+=( java/test_applet.html )
- fi
-
- einstalldocs
-}
diff --git a/sci-libs/libticables2/Manifest b/sci-libs/libticables2/Manifest
index 2c48b93e78a..3cd4eed5e44 100644
--- a/sci-libs/libticables2/Manifest
+++ b/sci-libs/libticables2/Manifest
@@ -1,3 +1 @@
-DIST libticables2-1.3.3.tar.bz2 495883 BLAKE2B 203b09c39d925a5dc4e3f8b828388e0f311f2cdadbd64e3db929c011eb750b7a86f27c307a8585de1099421f24d10971652afe99dcd7f32a806cf7fe7b4d7748 SHA512 19c9a6bb8319ccf9e9004e10c4addffbee605c3735e53e4a5628b360b0c2e8575076208d14d00d6304eb894d3c69aede6de00120cd26f8c543c6e6cc4adb21a9
-DIST libticables2-1.3.4.tar.bz2 920163 BLAKE2B 3770ed280b8a6ccf81f09a251ff33b80f025d878f75486e43d74feb820414b5167829825e10c9fc26f98eb06c63ad008f7062d51a60081d6a61a64bc9d8a51cf SHA512 fbea9ed2041a04f79e02045d40e88a3ab20edc8d86ecef4ae6a181063f3609b8b2c3aeb2ce2f4508be56655accba60eab7379116ac341921f233f469eb99b461
DIST libticables2-1.3.5.tar.bz2 187416 BLAKE2B aea17b04783ff09a0f36fff60938c6f954f832b33dceec427e11b29b16e442921370b3cb43cb7c8d70dad854e3e9894a1d52378fed3cf232f38d69757725ad41 SHA512 171abdf41f496891c62da17a2b84d929ac32021b0f2abc0c37ed73ec93806d4a14df37a8ffbe2b0c172ff3461aa6c639fc1ba23aafb19e024b99448dd66c63bd
diff --git a/sci-libs/libticables2/libticables2-1.3.3-r1.ebuild b/sci-libs/libticables2/libticables2-1.3.3-r1.ebuild
deleted file mode 100644
index 6696e6c73d3..00000000000
--- a/sci-libs/libticables2/libticables2-1.3.3-r1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils multilib
-
-DESCRIPTION="Library to handle different link cables for TI calculators"
-HOMEPAGE="http://lpg.ticalc.org/prj_tilp/"
-SRC_URI="mirror://sourceforge/tilp/tilp2-linux/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc nls static-libs usb"
-
-RDEPEND="
- dev-libs/glib:2
- usb? ( virtual/libusb:1 )
- nls? ( virtual/libintl )"
-
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- nls? ( sys-devel/gettext )"
-
-DOCS=( AUTHORS LOGO NEWS README ChangeLog docs/api.txt )
-
-src_configure() {
- # --disable-libusb $(use_enable usb libusb10) would enable virtual/libusb:1
- econf \
- --disable-rpath \
- $(use_enable debug logging) \
- $(use_enable nls) \
- $(use_enable static-libs static) \
- $(use_enable usb libusb) \
- $(use_enable usb libusb10)
-}
-
-src_install() {
- default
- use doc && dohtml docs/html/*
- use static-libs || rm -f "${ED}"/usr/$(get_libdir)/${PN}.la
-}
-
-pkg_postinst() {
- elog "Please read README in /usr/share/doc/${PF}"
- elog "if you encounter any problem with a link cable"
-}
diff --git a/sci-libs/libticables2/libticables2-1.3.4.ebuild b/sci-libs/libticables2/libticables2-1.3.4.ebuild
deleted file mode 100644
index 3ac960c27d3..00000000000
--- a/sci-libs/libticables2/libticables2-1.3.4.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools-utils
-
-DESCRIPTION="Library to handle different link cables for TI calculators"
-HOMEPAGE="http://lpg.ticalc.org/prj_tilp/"
-SRC_URI="mirror://sourceforge/tilp/tilp2-linux/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc nls static-libs usb"
-
-RDEPEND="
- dev-libs/glib:2
- usb? ( virtual/libusb:1 )
- nls? ( virtual/libintl )"
-
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- nls? ( sys-devel/gettext )"
-
-DOCS=( AUTHORS LOGO NEWS README ChangeLog docs/api.txt )
-
-src_configure() {
- # --disable-libusb $(use_enable usb libusb10) would enable virtual/libusb:1
- local myeconfargs=(
- --disable-rpath
- $(use_enable debug logging)
- $(use_enable nls)
- $(use_enable usb libusb)
- $(use_enable usb libusb10)
- )
- autotools-utils_src_configure
-}
-
-src_install() {
- autotools-utils_src_install
- use doc && dohtml docs/html/*
-}
-
-pkg_postinst() {
- elog "Please read README in /usr/share/doc/${PF}"
- elog "if you encounter any problem with a link cable"
-}
diff --git a/sci-libs/libxc/Manifest b/sci-libs/libxc/Manifest
index c019462953f..f49c88cee39 100644
--- a/sci-libs/libxc/Manifest
+++ b/sci-libs/libxc/Manifest
@@ -1,3 +1,2 @@
-DIST libxc-2.1.3.tar.gz 750044 BLAKE2B 6d6bb348bd8f7e25d6a3857fc40f0d7d3a7fe22c0a0514ca9f0ca60aadd67fde65b6052bc04e076a6328841c7ebe154921937083b8e9e2b9e55a5bcf197d08d0 SHA512 6cc7e4cb9b6187d3f7be9bca0aa574a1e0807db47201bee271d651e23c34ff7f00590cbe2ab1a6c399735e55d088a27e5b3456af6df46817137b3e6857c1c221
DIST libxc-2.2.3.tar.gz 734714 BLAKE2B c5c4c3aec3373b8b481de8ec1779366b6916899e0b77964cbde0e83904b351e009b14a3ff64e9f020640e6ebf68d78828615b8abf83a46fdf86ea16480083643 SHA512 bfcd88c1946e459227e9b1a32c513f0e68ae7a5497925ac6e692085542526ebad9fe2cd5722077c839c06dbaaceca601c7f615ee6936e638eb150a9d68278d5a
DIST libxc-3.0.0.tar.gz 8388775 BLAKE2B e82a7310c583c39b6c2313668a5d3a3d5ae7bf71ad450e9ac6241d1601bf1bb429abf98787f7e0c3c252e881c381b895e277d18619b57c46f2f910d7e079941c SHA512 42173341f917c2aed6954f76885d2a9149d7212d2525becf77072b9878753c28d752b5cf6b2c79c90a88d8aa033f0aa94fa9753eb67108e9325cee6919cece52
diff --git a/sci-libs/libxc/libxc-2.1.3.ebuild b/sci-libs/libxc/libxc-2.1.3.ebuild
deleted file mode 100644
index a54c26ddfc3..00000000000
--- a/sci-libs/libxc/libxc-2.1.3.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=true
-
-inherit autotools-utils flag-o-matic fortran-2 multilib
-
-MY_P=${P//_/-}
-
-DESCRIPTION="A library of exchange-correlation functionals for use in DFT"
-HOMEPAGE="https://octopus-code.org/wiki/Libxc"
-SRC_URI="https://www.tddft.org/programs/octopus/download/${PN}/${P}.tar.gz"
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux"
-IUSE="fortran static-libs -test"
-
-S="${WORKDIR}"/${MY_P}
-
-pkg_setup() {
- use fortran && fortran-2_pkg_setup
-}
-
-src_prepare() {
- sed \
- -e "s:${PN}.f90:${PN}.F90:g" \
- -i src/Makefile.am || die
- autotools-utils_src_prepare
-}
-
-src_configure() {
- local myeconfargs=( $(use_enable fortran) )
- autotools-utils_src_configure
-}
-
-## Upstream recommends not running the test suite because it requires
-## human expert interpretation to determine whether output is an error or
-## expected under certain circumstances. Nevertheless, experts might want the option.
-# The autotools src_test function modified not to die. Runs emake check in build directory.
-src_test() {
- debug-print-function ${FUNCNAME} "$@"
-
- _check_build_dir
- pushd "${BUILD_DIR}" > /dev/null || die
- make check || ewarn "Make check failed. See above for details."
- einfo "emake check done"
- popd > /dev/null || die
-}
-
-src_install() {
- autotools-utils_src_install
-
-}
diff --git a/sci-libs/magma/Manifest b/sci-libs/magma/Manifest
deleted file mode 100644
index 69864919e38..00000000000
--- a/sci-libs/magma/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST magma-1.4.0.tar.gz 3557459 BLAKE2B 610658835e09772f8a54cd851ca23f0123c45133faf7f7db0a9e62c690a0908f6769b7bf16ba955599503416d7ff1b979c7c9b7fa09b57f693a4da709bb483c6 SHA512 9857ac544cc1657ab7d2f6e8c9700facb7fa38278dbfbfeecc3656434de4bd5b96c268f1a98c9ffa823775aa64c315bd63e577b4d475e104311e09d3e5c3ca15
-DIST magma-1.4.1.tar.gz 3765589 BLAKE2B 9f382942e36492efb7a64d62bd62f704e54589aafcdc6d99d33cac1e49612014a139e01766539948f005d86b611c1bb772421635ccd66dd678549a662a410efa SHA512 d283b59b75ca35c8206c07eff97caf28f07ab598955c84a90d795d46905d879d0f1d7e6a2cb080dad74710255b28999e5ce9708e4f0f53a4adba50724fc5ef71
diff --git a/sci-libs/magma/magma-1.4.0.ebuild b/sci-libs/magma/magma-1.4.0.ebuild
deleted file mode 100644
index c50eea5b55a..00000000000
--- a/sci-libs/magma/magma-1.4.0.ebuild
+++ /dev/null
@@ -1,124 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-FORTRAN_STANDARD="77 90"
-
-inherit cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator python-any-r1
-
-DESCRIPTION="Matrix Algebra on GPU and Multicore Architectures"
-HOMEPAGE="http://icl.cs.utk.edu/magma/"
-SRC_URI="http://icl.cs.utk.edu/projectsfiles/${PN}/downloads/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~amd64-linux"
-IUSE="fermi kepler static-libs test"
-
-REQUIRED_USE="?? ( fermi kepler )"
-
-RDEPEND="
- dev-util/nvidia-cuda-toolkit
- virtual/cblas
- virtual/lapack"
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- test? ( ${PYTHON_DEPS} )"
-
-# We have to have write acccess /dev/nvidia0 and /dev/nvidiactl and the portage
-# user is (usually) not in the video group
-RESTRICT="userpriv !test? ( test )"
-
-pkg_setup() {
- fortran-2_pkg_setup
- use test && python-any-r1_pkg_setup
-}
-
-src_prepare() {
- # distributed pc file not so useful so replace it
- cat <<-EOF > ${PN}.pc
- prefix=${EPREFIX}/usr
- libdir=\${prefix}/$(get_libdir)
- includedir=\${prefix}/include/${PN}
- Name: ${PN}
- Description: ${DESCRIPTION}
- Version: ${PV}
- URL: ${HOMEPAGE}
- Libs: -L\${libdir} -lmagma
- Libs.private: -lm -lpthread -ldl -lcublas -lcudart
- Cflags: -I\${includedir}
- Requires: cblas lapack
- EOF
-
- if [[ $(tc-getCC) =~ gcc ]]; then
- local eopenmp=-fopenmp
- elif [[ $(tc-getCC) =~ icc ]]; then
- local eopenmp=-openmp
- else
- elog "Cannot detect compiler type so not setting openmp support"
- fi
- append-flags -fPIC ${eopenmp}
- append-ldflags -Wl,-soname,lib${PN}.so.1.4 ${eopenmp}
-
- cuda_src_prepare
-}
-
-src_configure() {
- cat <<-EOF > make.inc
- ARCH = $(tc-getAR)
- ARCHFLAGS = cr
- RANLIB = $(tc-getRANLIB)
- NVCC = nvcc
- CC = $(tc-getCXX)
- FORT = $(tc-getFC)
- INC = -I"${EPREFIX}/opt/cuda/include" -DADD_ -DCUBLAS_GFORTRAN
- OPTS = ${CFLAGS} -fPIC
- FOPTS = ${FFLAGS} -fPIC -x f95-cpp-input
- F77OPTS = ${FFLAGS} -fPIC
- NVOPTS = -DADD_ -DUNIX ${NVCCFLAGS}
- LDOPTS = ${LDFLAGS}
- LOADER = $(tc-getFC)
- LIBBLAS = $($(tc-getPKG_CONFIG) --libs cblas)
- LIBLAPACK = $($(tc-getPKG_CONFIG) --libs lapack)
- CUDADIR = ${EPREFIX}/opt/cuda
- LIBCUDA = -L\$(CUDADIR)/$(get_libdir) -lcublas -lcudart
- LIB = -pthread -lm -ldl \$(LIBCUDA) \$(LIBBLAS) \$(LIBLAPACK) -lstdc++
- EOF
- if use kepler; then
- echo >> make.inc "GPU_TARGET = Kepler"
- elif use fermi; then
- echo >> make.inc "GPU_TARGET = Fermi"
- else # See http://icl.cs.utk.edu/magma/forum/viewtopic.php?f=2&t=227
- echo >> make.inc "GPU_TARGET = Tesla"
- fi
-}
-
-src_compile() {
- emake lib
- emake shared
- mv lib/lib${PN}.so{,.1.4} || die
- ln -sf lib${PN}.so.1.4 lib/lib${PN}.so.1 || die
- ln -sf lib${PN}.so.1.4 lib/lib${PN}.so || die
-}
-
-src_test() {
- emake test lapacktest
- cd testing/lin || die
- # we need to access this while running the tests
- addwrite /dev/nvidiactl
- addwrite /dev/nvidia0
- LD_LIBRARY_PATH="${S}"/lib ${EPYTHON} lapack_testing.py || die
-}
-
-src_install() {
- dolib.so lib/lib*$(get_libname)*
- use static-libs && dolib.a lib/lib*.a
- insinto /usr/include/${PN}
- doins include/*.h
- insinto /usr/$(get_libdir)/pkgconfig
- doins ${PN}.pc
- dodoc README ReleaseNotes
-}
diff --git a/sci-libs/magma/magma-1.4.1.ebuild b/sci-libs/magma/magma-1.4.1.ebuild
deleted file mode 100644
index c50eea5b55a..00000000000
--- a/sci-libs/magma/magma-1.4.1.ebuild
+++ /dev/null
@@ -1,124 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-FORTRAN_STANDARD="77 90"
-
-inherit cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator python-any-r1
-
-DESCRIPTION="Matrix Algebra on GPU and Multicore Architectures"
-HOMEPAGE="http://icl.cs.utk.edu/magma/"
-SRC_URI="http://icl.cs.utk.edu/projectsfiles/${PN}/downloads/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~amd64-linux"
-IUSE="fermi kepler static-libs test"
-
-REQUIRED_USE="?? ( fermi kepler )"
-
-RDEPEND="
- dev-util/nvidia-cuda-toolkit
- virtual/cblas
- virtual/lapack"
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- test? ( ${PYTHON_DEPS} )"
-
-# We have to have write acccess /dev/nvidia0 and /dev/nvidiactl and the portage
-# user is (usually) not in the video group
-RESTRICT="userpriv !test? ( test )"
-
-pkg_setup() {
- fortran-2_pkg_setup
- use test && python-any-r1_pkg_setup
-}
-
-src_prepare() {
- # distributed pc file not so useful so replace it
- cat <<-EOF > ${PN}.pc
- prefix=${EPREFIX}/usr
- libdir=\${prefix}/$(get_libdir)
- includedir=\${prefix}/include/${PN}
- Name: ${PN}
- Description: ${DESCRIPTION}
- Version: ${PV}
- URL: ${HOMEPAGE}
- Libs: -L\${libdir} -lmagma
- Libs.private: -lm -lpthread -ldl -lcublas -lcudart
- Cflags: -I\${includedir}
- Requires: cblas lapack
- EOF
-
- if [[ $(tc-getCC) =~ gcc ]]; then
- local eopenmp=-fopenmp
- elif [[ $(tc-getCC) =~ icc ]]; then
- local eopenmp=-openmp
- else
- elog "Cannot detect compiler type so not setting openmp support"
- fi
- append-flags -fPIC ${eopenmp}
- append-ldflags -Wl,-soname,lib${PN}.so.1.4 ${eopenmp}
-
- cuda_src_prepare
-}
-
-src_configure() {
- cat <<-EOF > make.inc
- ARCH = $(tc-getAR)
- ARCHFLAGS = cr
- RANLIB = $(tc-getRANLIB)
- NVCC = nvcc
- CC = $(tc-getCXX)
- FORT = $(tc-getFC)
- INC = -I"${EPREFIX}/opt/cuda/include" -DADD_ -DCUBLAS_GFORTRAN
- OPTS = ${CFLAGS} -fPIC
- FOPTS = ${FFLAGS} -fPIC -x f95-cpp-input
- F77OPTS = ${FFLAGS} -fPIC
- NVOPTS = -DADD_ -DUNIX ${NVCCFLAGS}
- LDOPTS = ${LDFLAGS}
- LOADER = $(tc-getFC)
- LIBBLAS = $($(tc-getPKG_CONFIG) --libs cblas)
- LIBLAPACK = $($(tc-getPKG_CONFIG) --libs lapack)
- CUDADIR = ${EPREFIX}/opt/cuda
- LIBCUDA = -L\$(CUDADIR)/$(get_libdir) -lcublas -lcudart
- LIB = -pthread -lm -ldl \$(LIBCUDA) \$(LIBBLAS) \$(LIBLAPACK) -lstdc++
- EOF
- if use kepler; then
- echo >> make.inc "GPU_TARGET = Kepler"
- elif use fermi; then
- echo >> make.inc "GPU_TARGET = Fermi"
- else # See http://icl.cs.utk.edu/magma/forum/viewtopic.php?f=2&t=227
- echo >> make.inc "GPU_TARGET = Tesla"
- fi
-}
-
-src_compile() {
- emake lib
- emake shared
- mv lib/lib${PN}.so{,.1.4} || die
- ln -sf lib${PN}.so.1.4 lib/lib${PN}.so.1 || die
- ln -sf lib${PN}.so.1.4 lib/lib${PN}.so || die
-}
-
-src_test() {
- emake test lapacktest
- cd testing/lin || die
- # we need to access this while running the tests
- addwrite /dev/nvidiactl
- addwrite /dev/nvidia0
- LD_LIBRARY_PATH="${S}"/lib ${EPYTHON} lapack_testing.py || die
-}
-
-src_install() {
- dolib.so lib/lib*$(get_libname)*
- use static-libs && dolib.a lib/lib*.a
- insinto /usr/include/${PN}
- doins include/*.h
- insinto /usr/$(get_libdir)/pkgconfig
- doins ${PN}.pc
- dodoc README ReleaseNotes
-}
diff --git a/sci-libs/magma/metadata.xml b/sci-libs/magma/metadata.xml
deleted file mode 100644
index 63989ce9cab..00000000000
--- a/sci-libs/magma/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <longdescription lang="en">
- The Matrix Algebra on GPU and Multicore Architectures
- project aims to develop a dense linear algebra library
- similar to LAPACK but for heterogeneous/hybrid architectures, starting
- with current "Multicore+GPU" systems.
-</longdescription>
- <use>
- <flag name="fermi">Compile for GPU NVIDIA Fermi family (2.x cards)</flag>
- <flag name="kepler">Compile for GPU NVIDIA Kepler family (GF 6xx cards)</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-libs/minfx/Manifest b/sci-libs/minfx/Manifest
deleted file mode 100644
index 90d4bb472a9..00000000000
--- a/sci-libs/minfx/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST minfx-1.0.11.tar.gz 62102 BLAKE2B 1a7a7be4d3a9290be84ec73786712ff99b605d72c13a0c32cd6965df3412d8a1f0de4f0bd9ebc0e4fd231b573fe8b3b9e6862586598452de1a4088cdbd2ffb85 SHA512 1eb3136f363be4e8798bc01e638777ef4713ddc33521980923f0157c7b25cbbb03762b571cea9231f64764a93085ce90b4c521b32d71845a18d5be60b8318976
diff --git a/sci-libs/minfx/metadata.xml b/sci-libs/minfx/metadata.xml
deleted file mode 100644
index 3140425edf5..00000000000
--- a/sci-libs/minfx/metadata.xml
+++ /dev/null
@@ -1,13 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
- The minfx project is a python package for numerical optimisation,
- being a large collection of standard minimisation algorithms. The name minfx
- is simply a shortening of the mathematical expression min f(x).
- </longdescription>
-</pkgmetadata>
diff --git a/sci-libs/minfx/minfx-1.0.11.ebuild b/sci-libs/minfx/minfx-1.0.11.ebuild
deleted file mode 100644
index af544263d47..00000000000
--- a/sci-libs/minfx/minfx-1.0.11.ebuild
+++ /dev/null
@@ -1,17 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python3_6 )
-
-inherit distutils-r1
-
-DESCRIPTION="Numerical optimisation library"
-HOMEPAGE="http://gna.org/projects/minfx"
-SRC_URI="http://download.gna.org/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
diff --git a/sci-libs/openblas/openblas-0.3.10.ebuild b/sci-libs/openblas/openblas-0.3.10.ebuild
index 9d96c6fa9fd..d7d208f1143 100644
--- a/sci-libs/openblas/openblas-0.3.10.ebuild
+++ b/sci-libs/openblas/openblas-0.3.10.ebuild
@@ -84,7 +84,7 @@ src_test() {
}
src_install() {
- emake install DESTDIR="${ED}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \
+ emake install DESTDIR="${D}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \
OPENBLAS_LIBRARY_DIR='$(PREFIX)'/$(get_libdir)
dodoc GotoBLAS_*.txt *.md Changelog.txt
diff --git a/sci-libs/plotmm/Manifest b/sci-libs/plotmm/Manifest
deleted file mode 100644
index 48e7b7bd43a..00000000000
--- a/sci-libs/plotmm/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST plotmm-0.1.2.tar.gz 473175 BLAKE2B f024abbe77e208443cdf58a7817cdea9d1a93435b55e62d4579c341ca773fc2199def0e93fbba980891dd38c0085515e01833a11fd37f87bdeb0b2737a8ff809 SHA512 68484d7ed3b4d6520782735e05ad3cf9a5749f723285a2a3d0d1fabe3b23df57856d24addb31c23e3f23174655095f55b9b9a8d10316812d7a80fe13e204fab6
diff --git a/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch b/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch
deleted file mode 100644
index a9aa53190d5..00000000000
--- a/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch
+++ /dev/null
@@ -1,100 +0,0 @@
-diff -ur plotmm-0.1.2-old/plotmm/compat.h plotmm-0.1.2/plotmm/compat.h
---- plotmm-0.1.2-old/plotmm/compat.h 2005-11-09 17:36:02.000000000 +0100
-+++ plotmm-0.1.2/plotmm/compat.h 2008-07-25 00:13:55.000000000 +0200
-@@ -58,7 +58,7 @@
- #else
-
- namespace PlotMM {
-- typedef SigC::ObjectBase ObjectBase;
-+ typedef sigc::ObjectBase ObjectBase;
- }
-
- #endif
-diff -ur plotmm-0.1.2-old/plotmm/curve.h plotmm-0.1.2/plotmm/curve.h
---- plotmm-0.1.2-old/plotmm/curve.h 2005-11-09 17:47:21.000000000 +0100
-+++ plotmm-0.1.2/plotmm/curve.h 2008-07-25 00:24:02.000000000 +0200
-@@ -140,7 +140,7 @@
- int from = 0, int to = -1);
-
- //! Signals that this curve has changed in some way or the other
-- SigC::Signal0<void> signal_curve_changed;
-+ sigc::signal0<void> signal_curve_changed;
-
- protected:
- virtual void init(const Glib::ustring &title);
-diff -ur plotmm-0.1.2-old/plotmm/plot.cc plotmm-0.1.2/plotmm/plot.cc
---- plotmm-0.1.2-old/plotmm/plot.cc 2005-11-09 17:59:48.000000000 +0100
-+++ plotmm-0.1.2/plotmm/plot.cc 2008-07-25 00:24:30.000000000 +0200
-@@ -322,7 +322,7 @@
- connect(sigc::mem_fun(*this,&Plot::on_canvas_expose_event));
- #else
- canvas_.signal_expose_event().
-- connect(SigC::slot(*this,&Plot::on_canvas_expose_event));
-+ connect(sigc::slot(*this,&Plot::on_canvas_expose_event));
- #endif
-
- show_all();
-@@ -406,19 +406,19 @@
- }
-
- //! Return the signal owned by plot canvas
--SigC::Signal3<void,int,int,GdkEventButton*> Plot::signal_plot_mouse_press()
-+sigc::signal3<void,int,int,GdkEventButton*> Plot::signal_plot_mouse_press()
- {
- return canvas_.signal_plot_mouse_press;
- }
-
- //! Return the signal owned by plot canvas
--SigC::Signal3<void,int,int,GdkEventButton*> Plot::signal_plot_mouse_release()
-+sigc::signal3<void,int,int,GdkEventButton*> Plot::signal_plot_mouse_release()
- {
- return canvas_.signal_plot_mouse_release;
- }
-
- //! Return the signal owned by plot canvas
--SigC::Signal3<void,int,int,GdkEventMotion*> Plot::signal_plot_mouse_move()
-+sigc::signal3<void,int,int,GdkEventMotion*> Plot::signal_plot_mouse_move()
- {
- return canvas_.signal_plot_mouse_move;
- }
-diff -ur plotmm-0.1.2-old/plotmm/plot.h plotmm-0.1.2/plotmm/plot.h
---- plotmm-0.1.2-old/plotmm/plot.h 2004-03-09 10:51:55.000000000 +0100
-+++ plotmm-0.1.2/plotmm/plot.h 2008-07-25 00:25:17.000000000 +0200
-@@ -79,9 +79,9 @@
- virtual void clear();
- virtual void end_replot();
-
-- SigC::Signal3<void,int,int,GdkEventButton*> signal_plot_mouse_press;
-- SigC::Signal3<void,int,int,GdkEventButton*> signal_plot_mouse_release;
-- SigC::Signal3<void,int,int,GdkEventMotion*> signal_plot_mouse_move;
-+ sigc::signal3<void,int,int,GdkEventButton*> signal_plot_mouse_press;
-+ sigc::signal3<void,int,int,GdkEventButton*> signal_plot_mouse_release;
-+ sigc::signal3<void,int,int,GdkEventMotion*> signal_plot_mouse_move;
-
- protected:
- virtual bool on_expose_event(GdkEventExpose* event);
-@@ -141,9 +141,9 @@
- Scale *scale(PlotAxisID id) { return tickMark_[id]; }
- PlotLabel *label(PlotAxisID id) { return axisLabel_[id]; }
-
-- SigC::Signal3<void,int,int,GdkEventButton*> signal_plot_mouse_press();
-- SigC::Signal3<void,int,int,GdkEventButton*> signal_plot_mouse_release();
-- SigC::Signal3<void,int,int,GdkEventMotion*> signal_plot_mouse_move();
-+ sigc::signal3<void,int,int,GdkEventButton*> signal_plot_mouse_press();
-+ sigc::signal3<void,int,int,GdkEventButton*> signal_plot_mouse_release();
-+ sigc::signal3<void,int,int,GdkEventMotion*> signal_plot_mouse_move();
-
- void set_selection(const Rectangle &r);
- Rectangle get_selection() { return select_; }
-diff -ur plotmm-0.1.2-old/plotmm/scale.h plotmm-0.1.2/plotmm/scale.h
---- plotmm-0.1.2-old/plotmm/scale.h 2004-03-05 16:25:43.000000000 +0100
-+++ plotmm-0.1.2/plotmm/scale.h 2008-07-25 00:25:30.000000000 +0200
-@@ -133,7 +133,7 @@
- /*! This signal is thrown whenever the scale is enabled or disabled
- * \sa set_enabled, enabled
- */
-- SigC::Signal1<void,bool> signal_enabled;
-+ sigc::signal1<void,bool> signal_enabled;
-
- protected:
- virtual void on_realize();
diff --git a/sci-libs/plotmm/metadata.xml b/sci-libs/plotmm/metadata.xml
deleted file mode 100644
index 6907b0a4da6..00000000000
--- a/sci-libs/plotmm/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <!-- maintainer-needed -->
- <upstream>
- <remote-id type="sourceforge">plotmm</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-libs/plotmm/plotmm-0.1.2.ebuild b/sci-libs/plotmm/plotmm-0.1.2.ebuild
deleted file mode 100644
index 5cf316ca267..00000000000
--- a/sci-libs/plotmm/plotmm-0.1.2.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-inherit eutils flag-o-matic
-
-DESCRIPTION="Plot widget for GTKmm"
-HOMEPAGE="http://plotmm.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~ppc ~x86"
-IUSE="doc examples"
-
-RDEPEND="dev-cpp/gtkmm:2.4"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-# NOTES:
-# somewhat, there is a dep on libsigc++ but it's much more via gtkmm
-
-src_prepare() {
- epatch "${FILESDIR}/${P}-libsigc++-2.2.patch"
-
- if ! use examples; then
- sed -i -e "s:examples::" Makefile.in || die "sed failed"
- fi
-}
-
-src_configure() {
- append-cxxflags -std=c++11
- econf \
- --disable-maintainer-mode \
- --enable-fast-install \
- --disable-libtool-lock
-}
-
-src_install() {
- default
-
- if use doc; then
- dohtml -r doc/html/*
- fi
-
- if use examples; then
- # rename installed bin files
- mv "${D}"/usr/bin/curves "${D}"/usr/bin/${PN}-curves || die "mv failed"
- mv "${D}"/usr/bin/simple "${D}"/usr/bin/${PN}-simple || die "mv failed"
-
- # install sources
- insinto /usr/share/doc/${PF}/examples/
- doins examples/{curves/curves,simple/simple}.cc
-
- elog "You can use examples by calling ${PN}-curves or ${PN}-simple."
- elog "Examples source code is in /usr/share/doc/${PF}/examples."
- fi
-}
diff --git a/sci-libs/plplot/files/plplot-5.15.0-QPainterPath-include.patch b/sci-libs/plplot/files/plplot-5.15.0-QPainterPath-include.patch
new file mode 100644
index 00000000000..3c6b85b1714
--- /dev/null
+++ b/sci-libs/plplot/files/plplot-5.15.0-QPainterPath-include.patch
@@ -0,0 +1,10 @@
+--- a/include/qt.h
++++ b/include/qt.h
+@@ -67,6 +67,7 @@
+ #include <QMainWindow>
+ #include <QPicture>
+ #include <QMutex>
++#include <QPainterPath>
+
+ #include "plDevs.h"
+ #include "plplotP.h"
diff --git a/sci-libs/plplot/plplot-5.15.0-r1.ebuild b/sci-libs/plplot/plplot-5.15.0-r1.ebuild
index f0f9d5c4247..7f16c4d0e29 100644
--- a/sci-libs/plplot/plplot-5.15.0-r1.ebuild
+++ b/sci-libs/plplot/plplot-5.15.0-r1.ebuild
@@ -108,6 +108,7 @@ PATCHES=(
"${FILESDIR}"/${PN}-5.15.0-multiarch.patch
"${FILESDIR}"/${PN}-5.15.0-ocaml.patch
"${FILESDIR}"/${PN}-5.12.0-safe-string.patch
+ "${FILESDIR}"/${PN}-5.15.0-QPainterPath-include.patch
)
pkg_setup() {
diff --git a/sci-libs/qd/qd-2.3.17.ebuild b/sci-libs/qd/qd-2.3.17.ebuild
index c63f70cc523..2e7467e99c7 100644
--- a/sci-libs/qd/qd-2.3.17.ebuild
+++ b/sci-libs/qd/qd-2.3.17.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -8,7 +8,7 @@ FORTRAN_NEEDED=fortran
inherit autotools fortran-2
DESCRIPTION="Quad-double and double-double float arithmetics"
-HOMEPAGE="http://crd-legacy.lbl.gov/~dhbailey/mpdist/"
+HOMEPAGE="https://www.davidhbailey.com/dhbsoftware/"
SRC_URI="http://crd.lbl.gov/~dhbailey/mpdist/${P}.tar.gz"
SLOT="0"
diff --git a/sci-libs/qd/qd-2.3.22.ebuild b/sci-libs/qd/qd-2.3.22.ebuild
index aca6e4aa661..ba78c43a2ef 100644
--- a/sci-libs/qd/qd-2.3.22.ebuild
+++ b/sci-libs/qd/qd-2.3.22.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -8,7 +8,7 @@ FORTRAN_NEEDED=fortran
inherit autotools fortran-2
DESCRIPTION="Quad-double and double-double float arithmetics"
-HOMEPAGE="http://crd-legacy.lbl.gov/~dhbailey/mpdist/"
+HOMEPAGE="https://www.davidhbailey.com/dhbsoftware/"
SRC_URI="http://crd.lbl.gov/~dhbailey/mpdist/${P}.tar.gz"
SLOT="0"
diff --git a/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild b/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild
index 781d1d056c2..57148f4551b 100644
--- a/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild
+++ b/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild
@@ -11,7 +11,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
-KEYWORDS="~alpha amd64 ~arm hppa ppc ppc64 sparc x86 ~amd64-linux ~ppc-macos"
+KEYWORDS="~alpha amd64 ~arm ~arm64 hppa ppc ppc64 sparc x86 ~amd64-linux ~ppc-macos"
IUSE="static-libs"
RDEPEND="virtual/lapack"
diff --git a/sci-libs/rtree/Manifest b/sci-libs/rtree/Manifest
new file mode 100644
index 00000000000..405a862ae51
--- /dev/null
+++ b/sci-libs/rtree/Manifest
@@ -0,0 +1 @@
+DIST Rtree-0.9.4.tar.gz 62017 BLAKE2B 72a979a3b9b9e9e1d18ea8646bbf860413c18420ce40946108c4f2f0e59fcb5bb64971a57936a92714e02e13419f7dc594b2371e4b44a4fd6a3e3986c19f7d85 SHA512 59981ffefedac1162faaa86ea10d7d5503da46c7ae9588a57e1a49214043de5f41bd4836965651d4cd22e7959c37cc6d586d9912568a2aaf693a0afb7895b429
diff --git a/sci-libs/Rtree/metadata.xml b/sci-libs/rtree/metadata.xml
index d03728e20d7..d03728e20d7 100644
--- a/sci-libs/Rtree/metadata.xml
+++ b/sci-libs/rtree/metadata.xml
diff --git a/sci-libs/Rtree/Rtree-0.9.4.ebuild b/sci-libs/rtree/rtree-0.9.4-r1.ebuild
index ee3030b4dff..a0940fd1901 100644
--- a/sci-libs/Rtree/Rtree-0.9.4.ebuild
+++ b/sci-libs/rtree/rtree-0.9.4-r1.ebuild
@@ -4,12 +4,16 @@
EAPI=7
PYTHON_COMPAT=( python3_{7..8} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
+MY_PN="Rtree"
+MY_P="${MY_PN}-${PV}"
+
DESCRIPTION="R-Tree spatial index for Python GIS"
HOMEPAGE="https://rtree.readthedocs.io/en/latest/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz"
LICENSE="MIT"
KEYWORDS="~amd64 ~x86"
@@ -22,3 +26,7 @@ RDEPEND="sci-libs/libspatialindex"
distutils_enable_sphinx docs/source
distutils_enable_tests pytest
+
+DEPEND+="
+ test? ( dev-python/numpy[${PYTHON_USEDEP}] )
+"
diff --git a/sci-libs/scotch/files/scotch-5.1.12b-as-needed.patch b/sci-libs/scotch/files/scotch-5.1.12b-as-needed.patch
deleted file mode 100644
index 73888d8797e..00000000000
--- a/sci-libs/scotch/files/scotch-5.1.12b-as-needed.patch
+++ /dev/null
@@ -1,112 +0,0 @@
-diff -Nur src.orig/esmumps/Makefile src/esmumps/Makefile
---- src.orig/esmumps/Makefile 2012-03-12 00:14:14.536109811 +0000
-+++ src/esmumps/Makefile 2012-03-12 04:26:12.884108074 +0000
-@@ -44,7 +44,7 @@
- $(CC) $(CFLAGS) $(CLIBFLAGS) -I$(includedir) -c $(<) -o $(@)
-
- %$(EXE) : %.c
-- $(CC) $(CFLAGS) -I$(includedir) $(<) -o $(@) -L$(libdir) $(LDFLAGS) -L. -l$(ESMUMPSLIB) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit
-+ $(CC) $(CFLAGS) -I$(includedir) $(<) -L$(libdir) -L. -l$(ESMUMPSLIB) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS) -o $(@)
-
- ##
- ## Project rules.
-@@ -57,9 +57,9 @@
- libesmumps$(LIB) \
- main_esmumps$(EXE)
-
--ptscotch : clean
-+ptscotch : clean common.h
- $(MAKE) CFLAGS="$(CFLAGS) -DSCOTCH_PTSCOTCH" CC=$(CCP) SCOTCHLIB=ptscotch ESMUMPSLIB=ptesmumps \
-- libesmumps$(LIB) \
-+ libptesmumps$(LIB) \
- main_esmumps$(EXE)
-
- install :
-@@ -142,7 +142,7 @@
- common.h \
- esmumps.h
-
--libesmumps$(LIB) : graph_graph$(OBJ) \
-+lib$(ESMUMPSLIB)$(LIB) : graph_graph$(OBJ) \
- order$(OBJ) \
- order_scotch_graph$(OBJ) \
- dof$(OBJ) \
-diff -Nur src.orig/libscotch/Makefile src/libscotch/Makefile
---- src.orig/libscotch/Makefile 2012-03-12 00:14:14.496108751 +0000
-+++ src/libscotch/Makefile 2012-03-12 01:32:28.562403624 +0000
-@@ -43,7 +43,7 @@
- $(CC) $(CFLAGS) $(CLIBFLAGS) -c $(<) -o $(@)
-
- %$(EXE) : %.c
-- $(CC) $(CFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) -o $(@) $(LDFLAGS)
-+ $(CC) $(CFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) $(LDFLAGS) -o $(@)
-
- ##
- ## Project rules.
-@@ -2543,7 +2543,7 @@
- mapping.h \
- order.h \
- parser.h
-- $(CCD) $(CFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) -o $(@) $(LDFLAGS)
-+ $(CCD) $(CFLAGS) -DSCOTCH_VERSION=$(VERSION) -DSCOTCH_RELEASE=$(RELEASE) -DSCOTCH_PATCHLEVEL=$(PATCHLEVEL) $(<) $(LDFLAGS) -o $(@)
-
- scotch.h : dummysizes$(EXE) \
- library.h
-diff -Nur src.orig/libscotchmetis/Makefile src/libscotchmetis/Makefile
---- src.orig/libscotchmetis/Makefile 2012-03-12 00:14:14.456107691 +0000
-+++ src/libscotchmetis/Makefile 2012-03-12 01:35:00.166422784 +0000
-@@ -44,7 +44,7 @@
- $(CC) $(CFLAGS) $(CLIBFLAGS) -I$(includedir) -I../libscotch -c $(<) -o $(@)
-
- %$(EXE) : %.c
-- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -o $(@) -L$(libdir) $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -L$(libdir) $(LDFLAGS) -o $(@)
-
- ##
- ## Project rules.
-diff -Nur src.orig/scotch/Makefile src/scotch/Makefile
---- src.orig/scotch/Makefile 2012-03-12 00:14:14.536109811 +0000
-+++ src/scotch/Makefile 2012-03-12 00:50:22.033571205 +0000
-@@ -41,13 +41,13 @@
- include ../Makefile.inc
-
- %$(EXE) : %$(OBJ)
-- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -o $(@) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS) -o $(@)
-
- %$(OBJ) : %.c
- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch -c $(<) -o $(@)
-
- %$(EXE) : %.c
-- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -o $(@) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS) -o $(@)
-
- ##
- ## Project rules.
-@@ -205,7 +205,7 @@
- $(libdir)/libptscotch$(LIB) \
- $(libdir)/libptscotcherrexit$(LIB) \
- dgmap.h
-- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -o $(@) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS) -o $(@)
-
- dgscat$(EXE) : dgscat.c \
- ../libscotch/module.h \
-@@ -315,7 +315,7 @@
- gout_o.c \
- $(includedir)/scotch.h \
- $(libdir)/libscotch$(LIB)
-- $(CC) $(CFLAGS) -I../libscotch -I$(includedir) gout_c.c gout_o.c -o $(@) -L$(libdir) -lscotch -lscotcherrexit $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I../libscotch -I$(includedir) gout_c.c gout_o.c -L$(libdir) -lscotch -lscotcherrexit $(LDFLAGS) -o $(@)
-
- gpart$(EXE) : gmap.c \
- ../libscotch/module.h \
-@@ -324,7 +324,7 @@
- $(libdir)/libscotch$(LIB) \
- $(libdir)/libscotcherrexit$(LIB) \
- gmap.h
-- $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -o $(@) -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS)
-+ $(CC) $(CFLAGS) -I$(includedir) -I../libscotch $(<) -DSCOTCH_COMPILE_PART -L$(libdir) -l$(SCOTCHLIB) -l$(SCOTCHLIB)errexit $(LDFLAGS) -o $(@)
-
-
- gscat$(EXE) : gscat.c \
diff --git a/sci-libs/Shapely/Manifest b/sci-libs/shapely/Manifest
index 4fab9715505..0ef111bb11b 100644
--- a/sci-libs/Shapely/Manifest
+++ b/sci-libs/shapely/Manifest
@@ -1,2 +1,3 @@
DIST Shapely-1.6.4.post2.tar.gz 225745 BLAKE2B 96e995db6dd1464bac7c2562efdc7f298a5f23c388e44f334db685b1cfa1025ff403db870e11328977a267483726504e03b6d7c47fe4234a3a5966a13b2b7311 SHA512 027c816ef2104f654569ca658b52b87c60e5ba6a45927fcc51c23dd1922f3f9f7fdcea3601160b0a999e39611617142833ccac790777093be8b96a0d9083f78f
-DIST Shapely-1.7.0.tar.gz 281419 BLAKE2B 1a4e84104f21d2f5a5eb810883a89deb20fd47cf146efed884994786364b29bb5a194b063a50ae21842c07c335cbbee0c3d1a1e4ff4e43e0d083080fe33815ac SHA512 4d944fc6727e11d004ef7ba0325c159aa5ae03043f17b029ab0a399d6dcd361c4d299ad864a045a99b0229e333d5b42634bc6fd1ed94b914b7cf58fb886af2de
+DIST shapely-1.7.0.tar.gz 281419 BLAKE2B 1a4e84104f21d2f5a5eb810883a89deb20fd47cf146efed884994786364b29bb5a194b063a50ae21842c07c335cbbee0c3d1a1e4ff4e43e0d083080fe33815ac SHA512 4d944fc6727e11d004ef7ba0325c159aa5ae03043f17b029ab0a399d6dcd361c4d299ad864a045a99b0229e333d5b42634bc6fd1ed94b914b7cf58fb886af2de
+DIST shapely-1.7.1.tar.gz 293368 BLAKE2B 14d9cb0c2b486a3a20b71c0cde7260ec357287ea020352c0320eea07b91674605bdcd22512b33c5ac5a71b89c3d811946f8dd6d3b90c61398203a4c68f30d067 SHA512 72070437960a8c1cf6504b5f4ccc8ec509f87fb6a90178e291aff14889f5add89f9ed4f7e9a19799ce0835c1aea3f0241eaa6efd4d8ea5b879f2167f7c1de50a
diff --git a/sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch b/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch
index a9213a33376..a9213a33376 100644
--- a/sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch
+++ b/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch
diff --git a/sci-libs/Shapely/metadata.xml b/sci-libs/shapely/metadata.xml
index 4cb05623997..c23d0b5a4d4 100644
--- a/sci-libs/Shapely/metadata.xml
+++ b/sci-libs/shapely/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="person">
- <email>expeditioneer@gentoo.org</email>
- <name>Dennis Lamm</name>
+ <maintainer type="project">
+ <email>3dprint@gentoo.org</email>
+ <name>Gentoo 3D Printer Project</name>
</maintainer>
<longdescription>
Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects.
diff --git a/sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild b/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild
index 236a29449e7..be793427c4b 100644
--- a/sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild
+++ b/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild
@@ -3,6 +3,10 @@
EAPI=7
+MY_PN="Shapely"
+MY_PV="$(ver_cut 1-3).post$(ver_cut 5)"
+MY_P="${MY_PN}-${MY_PV}"
+
PYTHON_COMPAT=( python3_{6,7,8} )
inherit distutils-r1
@@ -10,15 +14,13 @@ inherit distutils-r1
DESCRIPTION="Geometric objects, predicates, and operations"
HOMEPAGE="https://pypi.org/project/Shapely/"
-MY_PV="$(ver_cut 1-3).post$(ver_cut 5)"
-
if [[ ${PV} == "9999" ]] ; then
inherit git-r3
SRC_URI=""
- EGIT_REPO_URI="https://github.com/Toblerity/${PN}.git"
+ EGIT_REPO_URI="https://github.com/Toblerity/${MY_PN}.git"
else
- SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${PN}-${MY_PV}.tar.gz"
- KEYWORDS="amd64 x86"
+ SRC_URI="mirror://pypi/${PN:0:1}/${MY_P}.tar.gz"
+ KEYWORDS="amd64 ~arm64 x86"
fi
LICENSE="BSD"
@@ -36,7 +38,7 @@ RESTRICT="!test? ( test )"
PATCHES=( "${FILESDIR}/${P}-test_operations.patch" ) # bug 701624
-S="${WORKDIR}/${PN}-${MY_PV}"
+S="${WORKDIR}/${MY_P}"
python_prepare_all() {
# fix install path for Cython definition file
diff --git a/sci-libs/Shapely/Shapely-1.7.0.ebuild b/sci-libs/shapely/shapely-1.7.0.ebuild
index 83aed726c94..3e2d10095ce 100644
--- a/sci-libs/Shapely/Shapely-1.7.0.ebuild
+++ b/sci-libs/shapely/shapely-1.7.0.ebuild
@@ -3,6 +3,9 @@
EAPI=7
+MY_PN="Shapely"
+MY_P="${MY_PN}-${PV}"
+
PYTHON_COMPAT=( python3_{7..8} )
inherit distutils-r1
@@ -13,7 +16,7 @@ SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.g
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64 ~arm64 ~x86"
RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
@@ -24,6 +27,8 @@ BDEPEND="${RDEPEND}
dev-python/cython[${PYTHON_USEDEP}]
"
+S="${WORKDIR}/${MY_P}"
+
distutils_enable_tests pytest
distutils_enable_sphinx docs dev-python/matplotlib
diff --git a/sci-libs/shapely/shapely-1.7.1.ebuild b/sci-libs/shapely/shapely-1.7.1.ebuild
new file mode 100644
index 00000000000..3e2d10095ce
--- /dev/null
+++ b/sci-libs/shapely/shapely-1.7.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+MY_PN="Shapely"
+MY_P="${MY_PN}-${PV}"
+
+PYTHON_COMPAT=( python3_{7..8} )
+
+inherit distutils-r1
+
+DESCRIPTION="Geometric objects, predicates, and operations"
+HOMEPAGE="https://pypi.org/project/Shapely/ https://github.com/Toblerity/Shapely"
+SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ >=sci-libs/geos-3.3
+"
+
+BDEPEND="${RDEPEND}
+ dev-python/cython[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/${MY_P}"
+
+distutils_enable_tests pytest
+
+distutils_enable_sphinx docs dev-python/matplotlib
+
+python_test() {
+ distutils_install_for_testing
+ ${EPYTHON} -m pytest tests || die "tests failed under ${EPYTHON}"
+}
diff --git a/sci-libs/sundials/sundials-5.2.0.ebuild b/sci-libs/sundials/sundials-5.2.0.ebuild
index c6bc6848c81..fb50f916f61 100644
--- a/sci-libs/sundials/sundials-5.2.0.ebuild
+++ b/sci-libs/sundials/sundials-5.2.0.ebuild
@@ -16,7 +16,7 @@ SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz"
LICENSE="BSD"
SLOT="0/$(ver_cut 1)"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads"
REQUIRED_USE="hypre? ( mpi )"
diff --git a/sci-libs/tensorflow-estimator/Manifest b/sci-libs/tensorflow-estimator/Manifest
index c8747119185..70794737dc2 100644
--- a/sci-libs/tensorflow-estimator/Manifest
+++ b/sci-libs/tensorflow-estimator/Manifest
@@ -3,3 +3,4 @@ DIST bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip 159656 BLA
DIST bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip 9422 BLAKE2B bbc45c97551ee8126335b611ffca6574dac843d4db9b3221b10d26487f8eecfe38ba0cd67a4039a3ad921c25fea6294c43e4f4e7a57a060a30791acd6c4f9d39 SHA512 ba06242feb711e7fb6e821fd9ac029248b4f3e466fb1acf971d0db8196f3efe4d114ef137acbe4913073f8cbe8ccab4d47d8bafa21b867b2d6a6d57f5a647f0c
DIST tensorflow-estimator-2.1.tar.gz 622792 BLAKE2B d1c8abb22d90c789ebfadaf78ca932f87428274afe6e1ac20670bf6d2b4c1c6ea8f367b1eb7ee64ff9f6e9b8ecdc2f64113924e7e2286e3f4e3d2c36cb101794 SHA512 4aaa21969299b02443e9396c238ef4c03af3bde1d0142a81c04d9706f18b02bfd125f3aaf8ffb47e0a3ffad949c3d3bca3909375f12a1c1e4c55ca1cc7930d51
DIST tensorflow-estimator-2.2.0.tar.gz 627362 BLAKE2B 125792fc2167b8af837a99b08a9a26943bc5c1fda8ab3690b01c0d49a6dd39142ff4a063867dfe1bee3b99fb018981d0e4ee45d194caac2cd96a829ad22db0ad SHA512 aaf743835e2c606439fcccb56742997e930ba0e72c01d51633ce86824bbfaacd64607dc1fd7fb9604cc444feb65ebae60c2266be084e1b49ef2a1a9ca5a3d60d
+DIST tensorflow-estimator-2.3.0.tar.gz 642118 BLAKE2B 29ecf5b64da20e8e6981375f1631b9b7e8ad061f71d0a3f1ac567bcd04b02102c5854d24e5106660f6bcd7b4ca683bd3bfbde51f236669d0f17e8f847feb7039 SHA512 0befc9c04650a0cd91ce90bc2e9a5d17ae3f7d8d8e4b8f763f223bbb891c73c7e2cbe91a2779af36342008e16f02d118120d94165c6a8e3c14a723b32ee29cb0
diff --git a/sci-libs/tensorflow-estimator/tensorflow-estimator-2.2.0-r2.ebuild b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.2.0-r2.ebuild
new file mode 100644
index 00000000000..6000b574299
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.2.0-r2.ebuild
@@ -0,0 +1,74 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+MY_PN="estimator"
+MY_PV=${PV/_rc/-rc}
+MY_P=${MY_PN}-${MY_PV}
+
+inherit bazel distutils-r1 flag-o-matic toolchain-funcs
+
+DESCRIPTION="A high-level TensorFlow API that greatly simplifies machine learning programming"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+bazel_external_uris="
+ https://github.com/bazelbuild/rules_cc/archive/0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip -> bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip
+ https://github.com/bazelbuild/rules_cc/archive/8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip -> bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip
+ https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip"
+
+SRC_URI="https://github.com/tensorflow/${MY_PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+ ${bazel_external_uris}"
+
+RDEPEND="sci-libs/tensorflow[python,${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}"
+BDEPEND="
+ dev-java/java-config"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( CONTRIBUTING.md README.md )
+
+src_unpack() {
+ unpack "${P}.tar.gz"
+ bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+ bazel_setup_bazelrc
+ default
+ python_copy_sources
+}
+
+src_compile() {
+ export JAVA_HOME=$(java-config --jre-home)
+
+ do_compile() {
+ ebazel build //tensorflow_estimator/tools/pip_package:build_pip_package
+ ebazel shutdown
+
+ local srcdir="${T}/src-${EPYTHON/./_}"
+ mkdir -p "${srcdir}" || die
+ bazel-bin/tensorflow_estimator/tools/pip_package/build_pip_package --src "${srcdir}" || die
+ }
+
+ python_foreach_impl run_in_build_dir do_compile
+}
+
+src_install() {
+ do_install() {
+ cd "${T}/src-${EPYTHON/./_}" || die
+ esetup.py install
+ python_optimize
+ }
+ python_foreach_impl do_install
+
+ cd "${S}" || die
+ einstalldocs
+}
diff --git a/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild
new file mode 100644
index 00000000000..5fa7d1782c3
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild
@@ -0,0 +1,75 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+MY_PN="estimator"
+MY_PV=${PV/_rc/-rc}
+MY_P=${MY_PN}-${MY_PV}
+
+inherit bazel distutils-r1 flag-o-matic toolchain-funcs
+
+DESCRIPTION="A high-level TensorFlow API that greatly simplifies machine learning programming"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+bazel_external_uris="
+ https://github.com/bazelbuild/rules_cc/archive/0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip -> bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip
+ https://github.com/bazelbuild/rules_cc/archive/8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip -> bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip
+ https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip"
+
+SRC_URI="https://github.com/tensorflow/${MY_PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+ ${bazel_external_uris}"
+
+RDEPEND="sci-libs/tensorflow[python,${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}"
+BDEPEND="
+ dev-java/java-config
+ >=dev-util/bazel-3"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( CONTRIBUTING.md README.md )
+
+src_unpack() {
+ unpack "${P}.tar.gz"
+ bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+ bazel_setup_bazelrc
+ default
+ python_copy_sources
+}
+
+src_compile() {
+ export JAVA_HOME=$(java-config --jre-home)
+
+ do_compile() {
+ ebazel build //tensorflow_estimator/tools/pip_package:build_pip_package
+ ebazel shutdown
+
+ local srcdir="${T}/src-${EPYTHON/./_}"
+ mkdir -p "${srcdir}" || die
+ bazel-bin/tensorflow_estimator/tools/pip_package/build_pip_package --src "${srcdir}" || die
+ }
+
+ python_foreach_impl run_in_build_dir do_compile
+}
+
+src_install() {
+ do_install() {
+ cd "${T}/src-${EPYTHON/./_}" || die
+ esetup.py install
+ python_optimize
+ }
+ python_foreach_impl do_install
+
+ cd "${S}" || die
+ einstalldocs
+}
diff --git a/sci-libs/tensorflow/Manifest b/sci-libs/tensorflow/Manifest
index 1640aa58f4d..dfa445626ad 100644
--- a/sci-libs/tensorflow/Manifest
+++ b/sci-libs/tensorflow/Manifest
@@ -1,36 +1,53 @@
DIST ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz 100612 BLAKE2B 84f81072d3298dde613b4c1ebabf852c67e04b5882a4ca0ed6f218b42e8fa3ea9598140b0c0009e8d6b62d08902622a6d57ee005ec3ad8a808c9fb21aa53430c SHA512 03a289d8099a5c4a5298cba8f516d2edb41220935d8db750970113ca7513372c78241c2c948d0ffcd60e84686e50ba1d7fd0b46efea6881dd320435eca92a7b9
+DIST OouraFFT-v1.0.tar.gz 110531 BLAKE2B de0e280407e21118e2bc6ca93a7caf3c4a49d0a13eda018b1497f98851af73dda4cef56460dba310336c7ed958e34feef4784ca2575a13287dec2c1ac9a5af6d SHA512 89c6e8fd57abf26351b3efb792008a1bbe62d404a4225dcae8aa666b3782a421be071bdc9760ebb0c95b5336ee5ea517d2fa43ab915045f7cf6fd76e73578079
DIST abseil-cpp-43ef2148c0936ebf7cb4be6b19927a9d9d145b8f.tar.gz 1281523 BLAKE2B 955802c74ed9baf222dcd824d2940147ae89edbc88f12bb8f54839776fe18bb18c0fde23b0d3142bb3be65a57930c96d03fdd243e8da07435eeb04329c31483d SHA512 c2ae1bd789251ec70cd0baafd92521e48fb1648aee8d9d84a8269436300848b6a9d7aead6bef8a12d3a9040f19535ac725ae961f12566500d309bc13dfee26a4
+DIST abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz 1679879 BLAKE2B ce92197c564ff774db46027c32f97cfd55ff1d77b7cec5424e127d10a3b0a54d9e84537bd643c4eb330ca81959bcc0316b13c013b229df06b7f415864c451e46 SHA512 b429758c37749d3d5c5c220fe0dc00fa0e193b406545484095339b25674c4a3bb7850b76dd1a370ed2006729bcbbbb1b438995b614e149c2290bdb10038c49d1
DIST backports.weakref-1.0rc1.tar.gz 7761 BLAKE2B 4cb2554a4b71bb1f8c41a790268511e4b382effc7e0328f74346d086de539a177111de9e2dabac19a44b2a1cdbf59a7425e30eee4caa4bfe66b0ca97f1f460a9 SHA512 f37e9eb0d9060d2e1588a941f623460bd4477d7e180b38b5cd46d9c1db1ee094ae63e4f5eeeb422823bf3d067f46c4124cb124a9e4ddb795bc0bfbc4802ab826
DIST bazel-skylib.0.8.0.tar.gz 72941 BLAKE2B 1928989d3e5dc338fee974c5592a524adb492db172b1d2a849ed5f14f91dbb76606335d369e4b15c4eec41adfe3a23cdc5b4f3b2f1351a5e9c25103c002b96a2 SHA512 4729941cedca8ddb876a621b28221d3c17dbb5dd72af27e55f48274208f21db986c5e7cb8adb742c42124bfa8073eb782b49e2557cb3f3f95ca56833fef925c0
DIST bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz 660374 BLAKE2B 549292aa3ad8a6e01c29391a123f3cbc84d1f714ff9c68bfc6c8df07fa0ba3b19c22e61627f227a8a484f6d7d6c59935fd7560c447559ff5e774ddf1437eefe1 SHA512 83531a2646a9f63557eff6fefaf551ee7e9f0ccdb31374d7a17c35b9f9d844b9b405597972fcd31b2b68e9da312511bbfd9c8fbb75222f5924e1d2500cd1c2a6
DIST bazel_skylib-0.9.0.tar.gz 84644 BLAKE2B 40b69a524e632ea00d34b9cf805b882ac4c549dd465ef37f28e54729ff1b614a7610a4895cede4e0c938edba5b19f781f3c0bfdb62bde628ee0af21d6b679546 SHA512 af4bcb641fed05d15f2d0ffe0e3abdfe9c7a5deb9c53064992d6605d224ded1648b1bdfa293e161028913f9f2c178c68cc38bc16028892ca5b0f52b4e645209d
+DIST bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz 19956 BLAKE2B 73f04a13f8ac3552e6f0770d1ac4edcc1b5ef46e4a3c4f3b83f11eeffa632f764d37aa7a98b35b5be6bd0caef19f84d0dc1b88bc55ff5397012863af4ee6d902 SHA512 732f482338996a62db24bfa6acd2fde6b629ac0a49317ed4e4778a55bbbbb22225f42a6cfa18cdcc51c200e29abe82a1f2a5548df09b7244074ae52e1f62ef66
DIST bazelbuild-apple_support.0.7.1.tar.gz 20070 BLAKE2B e72098fc5017e3371b6af0f33f392a42da18376052f30db5dd602c5ccc0176c1ac8002cca3f598845c5cb33406b4fd8d30c5ea47c69add6c530b75dc6566a4b0 SHA512 bbab25c229404123d7d424fa261480cf887c749ae729cc1a00bd6c2554d4b4b3fa81e0eaa670542b3a5d3301f3bd5dcd7727d011ba854f13dbbf4f65895e4b08
+DIST bazelbuild-rules_android-v0.1.1.zip 14654 BLAKE2B 1cfd5af08c6eab9602883f62d85ef1b9eb02383f73dcc31ae84af880c9ba228ae349ac6b017c550286e248347193e2c56eba30c86174432429809447dd940ed2 SHA512 80628a5e2ca9806ab031cd0c2f2999bd67f5621a83e8300a51fe6233373bdaf7c90ff8fa9551c81e60fc904c4d7b24554327ac8ed2ee101e92c4ab9319c53f4a
+DIST bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz 1951045 BLAKE2B d8c17f301de729bbf5254acacf89490ab1034b1180d5ea788251ae6ba3e2b704c82d7f66d33a086f52ce3909cd33df7739d7d536c6be070a2d3454e2f280517f SHA512 a23826d8e53d49de6347eca052e980878d50b431bf02c9b8333234c0659d5e290447121bf9519729639891e67d732474a3c3b7a7502752b32f830680bb334bad
DIST bazelbuild-rules_apple.0.18.0.tar.gz 1333446 BLAKE2B c7667e05c236f4de44573707c795d31c980242a2ea6eb69261403e7b1b7cc852d899c9b76cba347df1b1006542f9d532d78586a3bf5f831d37f8f0c0cd79a8eb SHA512 209b21856642b03dc7d54c0c82826224167df7da4c6dda3d29490e0661cdfe35ad9abe763288e0ff80af4d681a361efb22e0ca45ead6fb96fd38f211bcb4435d
DIST bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip 171775 BLAKE2B ec0ece4555d779bc8380937baac517a8adf3b0176c4bfb1324943a91366ad9688f528a4bd69e4587bcc4ad427c71a53016a3e2d32a050d9d4ec99caac4967a8e SHA512 5c5e82f276c1c962fbd9c7ddf21df9aa4291f3285f3fa07cd2c2790475ccba670b0627fc3d6faedd1508eca4d80bdae64a31383f001f04f3031112be81c3e697
DIST bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip 72534 BLAKE2B 0bbcc2b3fefb8df84d9f72b13da59c377fcd657ead378f85f80a587f8750302236212ae5c58819933015e62425126bead0733d2924a567fb9c5cb14fb75271a8 SHA512 1818c555504ba89afff88d75fe8b4e1386b3665a3ad477c26b4e9504c8f52f398b6aaedbad41a4ab8b8d9b3f86e0992e7c83a6da70241685d7b79ba177af1035
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DIST bazelbuild-rules_docker-v0.10.0.tar.gz 549649 BLAKE2B e7a537b21138a5c5d9ce360e46238f57c917d2dbf5dd17887607402227cbe7c5d68aead9db0ecdb74c09eed9dac26eb86e004a9020c251152d15beb48be0e0d7 SHA512 7802107f8520c88646728800637cce54dbcefc54aa4361288a5b46e403e41998bc23e16fbe94f23a2ca52e5c33fc255af65846963c2fd0139ca1195435ce1b03
DIST bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip 9422 BLAKE2B bbc45c97551ee8126335b611ffca6574dac843d4db9b3221b10d26487f8eecfe38ba0cd67a4039a3ad921c25fea6294c43e4f4e7a57a060a30791acd6c4f9d39 SHA512 ba06242feb711e7fb6e821fd9ac029248b4f3e466fb1acf971d0db8196f3efe4d114ef137acbe4913073f8cbe8ccab4d47d8bafa21b867b2d6a6d57f5a647f0c
+DIST bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz 7612 BLAKE2B de9edd2e1f49edaec782cf58c4ebd3dc3c6d144499a18ac76a0685e28bb9fa6898980ea769c54186816dc696b2e9186d929e99602d8ea535409e1fd23b87da7b SHA512 dd2aef9011c6006e8adc777c211174c26ab74e3cf186541aba865012669ceebf7d96fa34a202654cdfb2beee4f67904f5b7736be466f2838cf31dfb3970f69cd
DIST bazelbuild-rules_python-0.0.1.tar.gz 2302092 BLAKE2B 1db52eebf2461d779f764f2afdd070d1d0dd65eb2b83ccd98c2831da1784614ca281b114064729a9f257c64eceb62975aac8362d231c84f32abdf19aee7a1852 SHA512 40fa069a4482e2f83e29dc8e109652d14d187b2ec8efdcd36e98d117de93d66a938ed74999b42a2293fcb6eccc0a111cbbcf65c5c155579214bb1b96644280a5
+DIST bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz 140484 BLAKE2B 2526d808a4763fffa16bb035de78993eefe6371a29139b152370081f548d8147868cc95194c06a54f1c5c0cd8b63ffbc59b00686bfaedede2463a448e38c2810 SHA512 e22a85a5dba52cc3474481798264571f6671aace19eecb058b24ac7d586ea7822ed3ae042b4a812671f81d4f9f8915aa2381fa6ac278da7969b976eaf28db636
DIST bazelbuild-rules_swift.0.12.1.tar.gz 111674 BLAKE2B 7c116d6098aa0725034dce4c83628c31c85c36a6331b44636deb2efe0f689a5baee8081b33d65e3727a83bca865bcabedd6f8fa1fdb60e901a9b60840c52c018 SHA512 6136feb3dc0074f82500000cf5335f046f21ea3a1edcb4dcb22228c82b56ed6a334e4b03e4e26a4d25549581abcf7df22b60a2bccf823a51bf270051fe18d489
DIST cub-1.8.0.zip 602396 BLAKE2B a5e302a52e04f85ae8e1836c59e799532a8b961a8d10c08fe1241c9045f88e31f1ebda6d26124b85c6df40968e1c7b3985a39961bf7614535aafcab2da1a576a SHA512 6167c5be94989f88e05a07508cf69cf2c6b22a5ac733804043daa46bd86a44a15a758b1ffb811bab28b82039d027516ed85b3d9f7677a740a7e00ec9c2f81aed
DIST dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz 39637 BLAKE2B 532a3ce3d0e354a73c19433f0210a64ecbf00d9134d06a0ee7462baaff3f2b981524aa630cf250595671d6673105724482c7d69e803179aac247f2020c883bd0 SHA512 3728db5213e887fd946f64ba5dc0c336be9a72a0966ee83f146148749ffc93ddb342e0735df6117d7943874c18f87de5791a28e4a57ea420bb8a4e2a5b7338bc
+DIST eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz 2628283 BLAKE2B feac186ce8d18026b10be4955267ed65b65b4432f02bcf817da08960c9164bcb22b352c413f59890aac2de87c5e3e9e05ea48dff28635bc8901628af518dc4d2 SHA512 f183bfe235a98dc308c69a1d9e168b538cc92cfbbe35d4e35596b0b2588ecad66212efb3d3ffbba7c8adbd67be24cc4dda5dba8dcdd67245eca2b1a0fb94d380
DIST eigen-4e696901f873a2347f76d931cf2f701e31e15d05.tar.gz 2580537 BLAKE2B 927897c80f3529da40a76ddde26113403926d730fa4539aa9e4121406e8d3852abcfdbc55d178723300e9daa26176f6170db06bb49a59cb190e8c7e6dfdea4dd SHA512 d5461e615044aa94b6ac9ab2815536f4bdf2b9ccfeb578cc7bc62554ba928b4192450f72f1350f3231ed44d2bb90e95218de9a5d0bcee9ec02867499a6dc5db0
DIST eigen-52a2fbbb008a47c5e3fb8ac1c65c2feecb0c511c.tar.gz 2585583 BLAKE2B a2ce9da5f962f891cba748f46ce43667ae2b7fef54d4cc83411eafbc24b331e586c44fb135a2c3597c77fe62b0c8ff1172ae5ce6876f00ddd6f6ef2eca802d9c SHA512 65a73d26474547db83b9b40a133dd2a021e0f5a459104f63124461b4aac28bf3579dc81475441b3576901f28f704d6d4624939b22ecfbfbec896148c4c38da7c
DIST farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz 467122 BLAKE2B 8b9dd426f4b9f732df6c8c09d868d1b1cc006c395b1525c46ea91c75318b723358c8e64bb0d86a73aace2032eded93f0d80cc7c2c77fddd6a39e3402ab4f2cb7 SHA512 7f5110514a8cdc7ce48d33fd94ad67d96a24e42e11b203e4d0986f4190545f051b2a63f8e09f2ac38c3aa4a5c62d9a0e02cd8ce02045037381fb62a99f0dcd00
DIST gemmlowp-12fed0cd7cfcd9e169bf1925bc3a7a58725fdcc3.zip 935628 BLAKE2B 09bd1dd1e367b1e5c4fe9a9525449c09460f19168bc03c57ad563aa27ec74a18f08b620a3dab6da4fa1a1448cdc7ce8bc8a089becc033b53fff4cc07593315ce SHA512 bd42a364f718f3b077cd9c840d626bfc1fd92ace98ce43329d8fa54700c9d28cb47568b6567e9b081b340af7be621c44be1ce06d4b8dccc4fb5d82c35b12f951
+DIST gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip 936866 BLAKE2B 0977df121a80de979a9996b58a0a8cad157db8d0862b96f95b3be1157cddbc6b40dff4fc7da4ee78f5986cbfff2a67c173155e849e772ae476398c51f3028311 SHA512 4bf036de43f5e0890f66e0b16cd9a0f52911b160f79c9c50cf403454fa9d6040df225d34e02f424da8bb8c5f7f5c002f88f4d232c61503aa825c907ad8742823
DIST highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz 138574 BLAKE2B cecd95039fc31545ced38a1949e7cb31d6f34deef7c8923b573aa7a632576d0a9b60fd24fbc8a40b8a840a7d2442ea28382fe842178a77467772ed4ba8a2cfb6 SHA512 d25162ed266a8c9c00e6978fcf642cf924f03c0d196f971d0d6f6a3454ca7dfc82f758eabd038ac08e0a5dacc51eccb9b674f588f64692f37cb7a17150aefe4f
DIST kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz 44744 BLAKE2B aeea5d23c122417ddb70a44354890242c4fb61c456fba9af79054293a1355939af51a681760ac27be55423f888649fd2826e634422c7e9cb3749a9d7f50ef990 SHA512 30f4fcd351bbcb950a27e2a77ca100ccdfd37deb17a05e7e31c3e8f1c56d7c626ab81bbd7497484e6b512e41f7b1bed714722a194b2218c669b297911101df7b
DIST llvm-387c3f74fd8efdc0be464b0e1a8033cc1eeb739c.tar.gz 115936989 BLAKE2B 624b4a898321e62002cbf3955f844755b3ba6b1c8acf9a310ddac19cf21f9627902eb0b3684e42bac1fe835be972322a5cc667f78a6e2b0e699f956e0cab81e8 SHA512 09ec39ec7a25703bbb47befb406be3de6d15232c971fa186e33dff80192876a827e35523a9782365e26a90abd42b32b9a2ee1443af71cc23cd825b3ff05df629
+DIST llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz 120301408 BLAKE2B 928117c2bae7bcdd2445e9f65297b45b009dfc62e9c16ed08a8f00aacee2497492b6fb4cbea0047a8aa1425b538e02af9b8e6dd21e52348cc45dfbb71ab3f47f SHA512 a9cfbd00a0530e4f5d001029c33be3723ed009799a42bd730a65319da671020a249ae5ba4496f1347a71a9ee69de4e9fe2b80c60ebd1bc4d6d4120bd3d6fecde
DIST llvm-ecc999101aadc8dc7d4af9fd88be10fe42674aa0.tar.gz 115788302 BLAKE2B ea18d6cb3cc8311a78e543996d88831e1ecf1dec58b7c890a80cd8fce86e1c52244b9cfc0d7ce0867480465c2d914555c16cf003bfdcf90056d63e8f4e0ea0c0 SHA512 5422762ffe1022ad4588bcf2bdce1a041c37b5edffed70fcefdd911b2dbf8b52cba9ec57670d48d7b69be6b71e354d333d6eaa5ac5260df56ed8ab18fd98fe88
DIST nvidia-nccl-0ceaec9cee96ae7658aa45686853286651f36384.tar.gz 107044 BLAKE2B fd018b1d40977add357e98382f41e3fa6456bdc9a181e2d6cc7a3bc7fb98d242b3216b5ed0c40323bbcc006ab5221b49819ebc1dccd0c8dd700d9504f085eed1 SHA512 e66f323abb68feeec41927cc23e3a85d82fd1b7105a6232626edba95acb9eb22b3fb8b28d1a7adb536c47c936f68271fe5d8f66d3059e3128608ad826dd7622e
DIST nvidia-nccl-3701130b3c1bcdb01c14b3cb70fe52498c1e82b7.tar.gz 123898 BLAKE2B 9a268e089877fde9ac900b43bbf829f7dedfa701b017568647e3564670d5457dc18c96846a2cc8674b243c0c7d97d322e7466167c322588af3ad4f2d189b175b SHA512 9b090a963213eb088edf247e72b51a6cc79669f507831b88205c75a006a43f3d2257c4e75a34c33987c7d95c421e2273642db4c716b02907e8de1b1ef5d080f0
+DIST nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz 147548 BLAKE2B f3d3dd222ae90ac9ac1457a9695f112a21f5652a5b40e10ac049da910f07707b1c3910f59734fbe5e2c6523c1e83f3801f809efa77d122a57e859828c74ba8c2 SHA512 d9ea83caf7940fb47134293236fcb7478c0d4e40365d3b0a29427758e2e2dbb980c5e8c05fc9fc3956ed5e21a82ec0efaa31d973fe9c73fa3f50465f76756131
DIST oourafft2d-20061228.tgz 54434 BLAKE2B 382dd5787155b877a2ad1d624596afb5dbbe146a7aedf044d7f016949deedac871a512a030b5e6ac9ea5310e216788ffb99af1dd9d2a0de3f1ad72d9e5e7a3db SHA512 af993f68e8e1eb3cb927a51e86da8f74cfafc912a7cd055515e50fe543dd19ab5a6f7b1c2be4a55d6f4a0e5d766ead34c3be4c5705be6353f78cb2a55bd5cf16
DIST pybind11-v2.3.0.tar.gz 564520 BLAKE2B a7c1485aa8f63a00eccd3103cf9f531a080b049be02e6182b30503ae6dd6c55fc517684ed9d92aaec244efd5f77336c68d1ea546833f7f0ae2fd7b090c19a02d SHA512 04542fe9dca2ffdb86c15698a4bbc041446a9f11970092e89a482ae0ff64c932f62fff8f437b98bdaa006c1fccabddd79f0c7e376f27daed2150b1d2f988e8aa
+DIST pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip 3787039 BLAKE2B 3a529648d548b7570fd38783e5a3915bf3ad82ab028ee11f70fddaf09b8d64dc58f4d32ed54557b9f3087a8bb13ff4fd78b3597df6b1b5d3c3ef65c03193251a SHA512 8b34e580f19494f92796176db3f14680fd1b7b64458c0ef8e71ff1b3f1cbe12204e901167a585c1e04e95fbeaad5de104abc5edf3ea81a0da1c480a99f6bb94b
+DIST pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz 3489028 BLAKE2B aa6b7719eb9871b6cc71318cb4a9c2e2397e665662b7978daecd9e8380304691a78b95118eba5cbbb738c4b490352a847f6ce6b5c4ae29de0543b95ecc557cbb SHA512 ecd2115340fa82a67db7889ce286c3070d5ab9c30b02372b08aac893e90ccebc65c6b3e66aa02a9ae9c57892d2d8c3b77cb836e5fc3b88df2c75d33e574d90d2
DIST re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz 316237 BLAKE2B 8a975bc3e78b690f70944651c7022c6d946f40b2eb5fe01b2e203141f94b890cf1ad5c72af8e7c6ff3c5242d42af5a8657ed69e3c74d9ac081beb15de6334c0c SHA512 e3e00e92700d08bc55ba0e96148ddf1e00de2d329c1fdac08691ff15976937829f66dbc84af886a4b749ad66ba4ab208d66811e97e33bb9c2d7359735406c450
+DIST ruy-34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip 312628 BLAKE2B e42c484092f5e93dee11bc7c6a92ade3b63533d3507fa5a805b16e3508b8a20b7cff734197ab9d8e9b0e67e9648987ccedc19a23deea93bb00269d2fc65424a4 SHA512 d1b5a73feb4cced7ee49e9bacb80f437b0bcde204c3bc082a2729efb1989517ac97d764d6fe00bd66f0d5349d19d9e0593868c8d22369dc38732cd2204419b1d
DIST sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz 2569603 BLAKE2B cd66dc8a0b4ad3ea586a79ef588c8d68e4f05b6ea89e6d8119b5ee338b9046c11a747ca57c2f80a3c90fab119c05e85f5965571c9e522ccb8a312b95804d1a36 SHA512 b819d050bb38246b503f1eb3d6e7d878d0f166f3602ae3c327749b1f6ddc2b1d6ac7f768b1f1d055b98b7b98812e4643a75bcebc9728c7f615d67ca739761b3e
DIST tensorflow-1.15.0-python-license.rst.txt 45132 BLAKE2B 8a8ace4b64fd9eda1932272704dd4fea002d2562cd9c2c94470d3ff5de58bb171ff849d3f998ea90cd779d1084d39af1267aca8400b74b701205d2e76e6a2628 SHA512 c79c42f4ceecf33c8f8778ca17b53595b75d5d0bdf30b11058cf01dd70a6351f530ca9dd846460aba14edc1d5876f7bf6fa0f9f49f7915590b0f54d267ce3856
DIST tensorflow-2.1.0.tar.gz 41637803 BLAKE2B 63aac95cdb71097d2e7a257a691a2b51703fb22d2535395494adebfae0d3f97f8dd9e0deaadf1c2f3d3d26138066a7c6fb9b9728b5b0ac3d54360d7b5e4bebff SHA512 6d09ba3c097e4b3d712e7164d649841572c418d56c207eea6d31e3b1851b84ce57e82801d9887d84cfd8fcf990a3ea4c4b4b05265f8d625509986412c230c3c6
DIST tensorflow-2.2.0.tar.gz 42100791 BLAKE2B 8b773ae9945ca267af33a34d86f6aef02310976bea1cdd98858d1405e8da845640b72a073b71fcfccb2b73f08600a5eada2c2332a8d9480bba71e9f25dbb2220 SHA512 94a2663497d333d543f363e9fea94fbcfdcdbbc0dfbaf009ba9181a808713aeb78f9b8805f56bea5fd3925a36f105427b3996795750589f378d8afbdadc2b86d
+DIST tensorflow-2.3.1.tar.gz 46544608 BLAKE2B c3cb0954fcd060b95d63895cbeeca20f6af29ade999dc43db5fe010d6b33b6f650047d529f174a1663c23440a56e057e2f97c503a4a40bcdac9374b549f3220e SHA512 e497ef4564f50abf9f918be4522cf702f4cf945cb1ebf83af1386ac4ddc7373b3ba70c7f803f8ca06faf2c6b5396e60b1e0e9b97bfbd667e733b08b6e6d70ef0
DIST tensorflow-patches-2.1.0.tar.bz2 5737 BLAKE2B 67f5004312389ed19e810aad9f2d5d4839d806b5a7422963520e0dff06b91346683647db757ac463af13ca70861a7ed9c94be242910abacc6be350e162947225 SHA512 a20bfb619d59e0d2741a27ce36e3d38dbb7a5a706d6bc56f8aa94b5b72288139ad301fc06390b128ef1c3a88b758d09d0224351590dedcda9c5309cc55af6fed
DIST tensorflow-patches-2.2.0-r1.tar.bz2 3890 BLAKE2B cf4e0d579992cd09136fe3a11c5016e7b996ea959dad9f3a1ccff2fa623c2c4eab1c6673dfaf08b3b01220fd00c9edd5966e1162049f6d1e4fe5af280f491850 SHA512 8d07c9351b75faf90a137f65c2e6147d884744c5ab9b0bacadfa7bdc7b66ec2ec92920c7d23396bb70f7f4fb290f3f818591f23c6a4e91ab1a79290cb4ea1533
+DIST tensorflow-patches-2.3.1-r1.tar.bz2 12300 BLAKE2B 068c127d7e980baf63068c524c9411e4f19bb79ee369221cf474a964a15ad340b28bde09504a8d524167eea036caf9d2dc52d0ad7ae1e52a76d1892833b033a0 SHA512 510676e4f999c12331a61bfeeca45b2526292d8bca8b0b42c1d8d466bc52722075fbd4df26a5f67dbe1ca4ccd9059e783c113cf694b436ff48c8114c99234cd3
+DIST tensorflow-patches-2.3.1.tar.bz2 11361 BLAKE2B 22ddd827f616e33fd259ce2b7da5cda539d856701ad108d1d3b52d1dab660bcddc809fd9e9db5e6496552df080493b0205b83a58dc32808dc70c60a5878aa8af SHA512 cdfc3407c775f8529cb8eb939b1046a7094ff999b8225e419e2ab4be19ecba6d853ebd8cd2dda77a7f60425a440f4d60bf3afca4a80688f0cba9967e14f8b8fb
diff --git a/sci-libs/tensorflow/tensorflow-2.2.0-r2.ebuild b/sci-libs/tensorflow/tensorflow-2.2.0-r2.ebuild
new file mode 100644
index 00000000000..1ab08e35c45
--- /dev/null
+++ b/sci-libs/tensorflow/tensorflow-2.2.0-r2.ebuild
@@ -0,0 +1,382 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DISTUTILS_OPTIONAL=1
+PYTHON_COMPAT=( python3_{6,7,8} )
+MY_PV=${PV/_rc/-rc}
+MY_P=${PN}-${MY_PV}
+
+inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs
+
+DESCRIPTION="Computation framework using data flow graphs for scalable machine learning"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda mpi +python xla"
+CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4"
+for i in $CPU_USE_FLAGS_X86; do
+ IUSE+=" cpu_flags_x86_$i"
+done
+
+# distfiles that bazel uses for the workspace, will be copied to basel-distdir
+bazel_external_uris="
+ https://storage.googleapis.com/mirror.tensorflow.org/www.kurims.kyoto-u.ac.jp/~ooura/fft2d.tgz -> oourafft2d-20061228.tgz
+ https://gitlab.com/libeigen/eigen/-/archive/52a2fbbb008a47c5e3fb8ac1c65c2feecb0c511c/eigen-52a2fbbb008a47c5e3fb8ac1c65c2feecb0c511c.tar.gz
+ https://github.com/abseil/abseil-cpp/archive/43ef2148c0936ebf7cb4be6b19927a9d9d145b8f.tar.gz -> abseil-cpp-43ef2148c0936ebf7cb4be6b19927a9d9d145b8f.tar.gz
+ https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz
+ https://github.com/bazelbuild/rules_apple/releases/download/0.18.0/rules_apple.0.18.0.tar.gz -> bazelbuild-rules_apple.0.18.0.tar.gz
+ https://github.com/bazelbuild/apple_support/releases/download/0.7.1/apple_support.0.7.1.tar.gz -> bazelbuild-apple_support.0.7.1.tar.gz
+ https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz
+ https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip
+ https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz
+ https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz
+ https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip
+ https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz
+ https://github.com/bazelbuild/rules_swift/releases/download/0.12.1/rules_swift.0.12.1.tar.gz -> bazelbuild-rules_swift.0.12.1.tar.gz
+ https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz
+ https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz
+ https://github.com/google/gemmlowp/archive/12fed0cd7cfcd9e169bf1925bc3a7a58725fdcc3.zip -> gemmlowp-12fed0cd7cfcd9e169bf1925bc3a7a58725fdcc3.zip
+ https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz
+ https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz
+ https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz
+ https://github.com/llvm/llvm-project/archive/387c3f74fd8efdc0be464b0e1a8033cc1eeb739c.tar.gz -> llvm-387c3f74fd8efdc0be464b0e1a8033cc1eeb739c.tar.gz
+ https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz
+ cuda? (
+ https://github.com/nvidia/nccl/archive/3701130b3c1bcdb01c14b3cb70fe52498c1e82b7.tar.gz -> nvidia-nccl-3701130b3c1bcdb01c14b3cb70fe52498c1e82b7.tar.gz
+ https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip
+ )
+ python? (
+ https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz
+ https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt
+ https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz
+ )"
+
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+ https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PV}-r1.tar.bz2
+ ${bazel_external_uris}"
+
+RDEPEND="
+ app-arch/snappy
+ dev-db/lmdb
+ dev-db/sqlite
+ dev-libs/double-conversion
+ dev-libs/icu
+ >=dev-libs/jsoncpp-1.9.2
+ dev-libs/libpcre
+ dev-libs/nsync
+ dev-libs/openssl:0=
+ >=dev-libs/protobuf-3.8.0:=
+ >=dev-libs/re2-0.2019.06.01
+ media-libs/giflib
+ media-libs/libjpeg-turbo
+ media-libs/libpng:0
+ >=net-libs/grpc-1.28
+ net-misc/curl
+ sys-libs/zlib
+ >=sys-apps/hwloc-2
+ cuda? (
+ >=dev-util/nvidia-cuda-toolkit-9.1[profiler]
+ dev-libs/cudnn
+ )
+ mpi? ( virtual/mpi )
+ python? (
+ ${PYTHON_DEPS}
+ >=dev-libs/flatbuffers-1.12.0
+ dev-python/absl-py[${PYTHON_USEDEP}]
+ >=dev-python/astor-0.7.1[${PYTHON_USEDEP}]
+ dev-python/astunparse[${PYTHON_USEDEP}]
+ >=dev-python/gast-0.3.3[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.19[${PYTHON_USEDEP}]
+ >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}]
+ dev-python/opt-einsum[${PYTHON_USEDEP}]
+ >=dev-python/protobuf-python-3.8.0[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ dev-python/termcolor[${PYTHON_USEDEP}]
+ >=dev-python/grpcio-1.28[${PYTHON_USEDEP}]
+ >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}]
+ >=net-libs/google-cloud-cpp-0.10.0
+ >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}]
+ >=sci-libs/keras-preprocessing-1.1.0[${PYTHON_USEDEP}]
+ >=sci-visualization/tensorboard-2.2.0[${PYTHON_USEDEP}]
+ )"
+DEPEND="${RDEPEND}
+ python? (
+ dev-python/mock
+ dev-python/setuptools
+ )"
+PDEPEND="python? (
+ >=sci-libs/tensorflow-estimator-2.2.0[${PYTHON_USEDEP}]
+ )"
+BDEPEND="
+ app-arch/unzip
+ >=dev-libs/protobuf-3.8.0
+ dev-java/java-config
+ dev-lang/swig
+ =dev-util/bazel-2.0*
+ cuda? (
+ >=dev-util/nvidia-cuda-toolkit-9.1[profiler]
+ )
+ !python? ( dev-lang/python )
+ python? (
+ dev-python/cython
+ dev-python/mock
+ >=dev-python/grpcio-tools-1.28
+ )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md )
+CHECKREQS_MEMORY="5G"
+CHECKREQS_DISK_BUILD="10G"
+
+get-cpu-flags() {
+ local i f=()
+ # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc.
+ for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do
+ use cpu_flags_x86_${i} && f+=( -m${i/_/.} )
+ done
+ use cpu_flags_x86_fma3 && f+=( -mfma )
+ echo "${f[*]}"
+}
+
+pkg_setup() {
+ ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities"
+ ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:"
+ ewarn "https://www.tensorflow.org/guide/migrate"
+
+ local num_pythons_enabled
+ num_pythons_enabled=0
+ count_impls(){
+ num_pythons_enabled=$((${num_pythons_enabled} + 1))
+ }
+ use python && python_foreach_impl count_impls
+
+ # 10G to build C/C++ libs, 5G per python impl
+ CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G"
+ check-reqs_pkg_setup
+}
+
+src_unpack() {
+ # Only unpack the main distfile
+ unpack "${P}.tar.gz"
+ unpack tensorflow-patches-${PV}-r1.tar.bz2
+ bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ append-flags $(get-cpu-flags)
+ bazel_setup_bazelrc
+
+ eapply "${WORKDIR}"/patches/*.patch
+
+ # Relax version checks in setup.py
+ sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py
+
+ # Prefixify hard-coded command locations
+ hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl
+
+ default
+ use python && python_copy_sources
+
+ use cuda && cuda_add_sandbox
+}
+
+src_configure() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_configure() {
+ export CC_OPT_FLAGS=" "
+ export TF_ENABLE_XLA=$(usex xla 1 0)
+ export TF_NEED_OPENCL_SYCL=0
+ export TF_NEED_OPENCL=0
+ export TF_NEED_COMPUTECPP=0
+ export TF_NEED_ROCM=0
+ export TF_NEED_MPI=$(usex mpi 1 0)
+ export TF_SET_ANDROID_WORKSPACE=0
+
+ if use python; then
+ export PYTHON_BIN_PATH="${PYTHON}"
+ export PYTHON_LIB_PATH="$(python_get_sitedir)"
+ else
+ export PYTHON_BIN_PATH="$(which python)"
+ export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')"
+ fi
+
+ export TF_NEED_CUDA=$(usex cuda 1 0)
+ export TF_DOWNLOAD_CLANG=0
+ export TF_CUDA_CLANG=0
+ export TF_NEED_TENSORRT=0
+ if use cuda; then
+ export TF_CUDA_PATHS="${EPREFIX}/opt/cuda"
+ export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)"
+ export TF_CUDA_VERSION="$(cuda_toolkit_version)"
+ export TF_CUDNN_VERSION="$(cuda_cudnn_version)"
+ einfo "Setting CUDA version: $TF_CUDA_VERSION"
+ einfo "Setting CUDNN version: $TF_CUDNN_VERSION"
+
+ if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then
+ ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler"
+ ewarn "version is not supported by the currently installed CUDA. TensorFlow will"
+ ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}."
+ ewarn "If the build fails with linker errors try rebuilding the relevant"
+ ewarn "dependencies using the same compiler version."
+ fi
+
+ if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then
+ ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0."
+ ewarn "These may not be optimal for your GPU."
+ ewarn ""
+ ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU,"
+ ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow."
+ ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5"
+ ewarn ""
+ ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus"
+ ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'"
+ fi
+ fi
+
+ # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2
+ local SYSLIBS=(
+ absl_py
+ astor_archive
+ astunparse_archive
+ boringssl
+ com_github_googleapis_googleapis
+ com_github_googlecloudplatform_google_cloud_cpp
+ com_github_grpc_grpc
+ com_google_protobuf
+ curl
+ cython
+ double_conversion
+ enum34_archive
+ flatbuffers
+ functools32_archive
+ gast_archive
+ gif
+ hwloc
+ icu
+ jsoncpp_git
+ libjpeg_turbo
+ lmdb
+ nasm
+ nsync
+ opt_einsum_archive
+ org_sqlite
+ pasta
+ pcre
+ png
+ pybind11
+ six_archive
+ snappy
+ swig
+ termcolor_archive
+ wrapt
+ zlib
+ )
+
+ export TF_SYSTEM_LIBS="${SYSLIBS[@]}"
+ export TF_IGNORE_MAX_BAZEL_VERSION=1
+
+ # This is not autoconf
+ ./configure || die
+
+ echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die
+ echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die
+ }
+ if use python; then
+ python_foreach_impl run_in_build_dir do_configure
+ else
+ do_configure
+ fi
+}
+
+src_compile() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ if use python; then
+ python_setup
+ BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}"
+ fi
+
+ # fail early if any deps are missing
+ ebazel build -k --nobuild \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so \
+ //tensorflow:libtensorflow_cc.so \
+ $(usex python '//tensorflow/tools/pip_package:build_pip_package' '')
+
+ ebazel build \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so
+ ebazel build //tensorflow:libtensorflow_cc.so
+
+ do_compile() {
+ ebazel build //tensorflow/tools/pip_package:build_pip_package
+ }
+ BUILD_DIR="${S}"
+ cd "${BUILD_DIR}"
+ use python && python_foreach_impl run_in_build_dir do_compile
+ ebazel shutdown
+}
+
+src_install() {
+ local i j
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_install() {
+ einfo "Installing ${EPYTHON} files"
+ local srcdir="${T}/src-${MULTIBUILD_VARIANT}"
+ mkdir -p "${srcdir}" || die
+ bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die
+ cd "${srcdir}" || die
+ esetup.py install
+
+ # libtensorflow_framework.so is in /usr/lib already
+ rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die
+ rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die
+ python_optimize
+ }
+
+ if use python; then
+ python_foreach_impl run_in_build_dir do_install
+
+ # Symlink to python-exec scripts
+ for i in "${ED}"/usr/lib/python-exec/*/*; do
+ n="${i##*/}"
+ [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}"
+ done
+
+ python_setup
+ local BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}" || die
+ fi
+
+ einfo "Installing headers"
+ ebazel build //tensorflow:install_headers
+ ebazel shutdown
+ insinto /usr/include/${PN}/
+ doins -r bazel-bin/tensorflow/include/*
+
+ einfo "Installing libs"
+ # Generate pkg-config file
+ ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die
+ insinto /usr/$(get_libdir)/pkgconfig
+ doins ${PN}.pc ${PN}_cc.pc
+
+ for l in libtensorflow{,_framework,_cc}.so; do
+ dolib.so bazel-bin/tensorflow/${l}
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1)
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3)
+ done
+
+ einstalldocs
+}
diff --git a/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild b/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild
new file mode 100644
index 00000000000..5ac893347dd
--- /dev/null
+++ b/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild
@@ -0,0 +1,405 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DISTUTILS_OPTIONAL=1
+PYTHON_COMPAT=( python3_{6,7,8} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+MY_PV=${PV/_rc/-rc}
+MY_P=${PN}-${MY_PV}
+
+inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs
+
+DESCRIPTION="Computation framework using data flow graphs for scalable machine learning"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda mpi +python xla"
+CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4"
+for i in $CPU_USE_FLAGS_X86; do
+ IUSE+=" cpu_flags_x86_$i"
+done
+
+# distfiles that bazel uses for the workspace, will be copied to basel-distdir
+bazel_external_uris="
+ https://github.com/petewarden/OouraFFT/archive/v1.0.tar.gz -> OouraFFT-v1.0.tar.gz
+ https://gitlab.com/libeigen/eigen/-/archive/386d809bde475c65b7940f290efe80e6a05878c4/eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz
+ https://github.com/abseil/abseil-cpp/archive/df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz -> abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz
+ https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz
+ https://github.com/bazelbuild/rules_apple/archive/5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz -> bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz
+ https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip -> bazelbuild-rules_android-v0.1.1.zip
+ https://github.com/bazelbuild/apple_support/archive/501b4afb27745c4813a88ffa28acd901408014e4.tar.gz -> bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz
+ https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz
+ https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip
+ https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz
+ https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz
+ https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip
+ https://github.com/bazelbuild/rules_proto/archive/97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz -> bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz
+ https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz
+ https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz -> bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz
+ https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz
+ https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz
+ https://github.com/google/gemmlowp/archive/fda83bdc38b118cc6b56753bd540caa49e570745.zip -> gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip
+ https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz
+ https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz
+ https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz
+ https://github.com/llvm/llvm-project/archive/7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz -> llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz
+ https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz
+ https://github.com/google/ruy/archive/34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip -> ruy-34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip
+ https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz -> pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz
+ https://github.com/pytorch/cpuinfo/archive/6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip -> pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip
+ cuda? (
+ https://github.com/nvidia/nccl/archive/5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz -> nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz
+ https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip
+ )
+ python? (
+ https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz
+ https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt
+ https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz
+ )"
+
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+ https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PVR}.tar.bz2
+ ${bazel_external_uris}"
+
+RDEPEND="
+ app-arch/snappy
+ dev-db/lmdb
+ dev-db/sqlite
+ dev-libs/double-conversion
+ dev-libs/icu:=
+ >=dev-libs/jsoncpp-1.9.2
+ dev-libs/libpcre
+ dev-libs/nsync
+ dev-libs/openssl:0=
+ >=dev-libs/protobuf-3.8.0:=
+ >=dev-libs/re2-0.2019.06.01:=
+ media-libs/giflib
+ media-libs/libjpeg-turbo
+ media-libs/libpng:0
+ >=net-libs/grpc-1.28:=
+ net-misc/curl
+ sys-libs/zlib
+ >=sys-apps/hwloc-2
+ cuda? (
+ || (
+ ( =dev-util/nvidia-cuda-toolkit-10.2*[profiler] =dev-libs/cudnn-7* )
+ ( =dev-util/nvidia-cuda-toolkit-10.1*[profiler] =dev-libs/cudnn-7* )
+ ( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* )
+ ( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* )
+ ( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* )
+ )
+ )
+ mpi? ( virtual/mpi )
+ python? (
+ ${PYTHON_DEPS}
+ >=dev-libs/flatbuffers-1.12.0:=
+ dev-python/absl-py[${PYTHON_USEDEP}]
+ >=dev-python/astor-0.7.1[${PYTHON_USEDEP}]
+ dev-python/astunparse[${PYTHON_USEDEP}]
+ >=dev-python/gast-0.3.3[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.19[${PYTHON_USEDEP}]
+ >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}]
+ dev-python/opt-einsum[${PYTHON_USEDEP}]
+ >=dev-python/protobuf-python-3.8.0[${PYTHON_USEDEP}]
+ dev-python/pybind11[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ dev-python/termcolor[${PYTHON_USEDEP}]
+ >=dev-python/grpcio-1.28[${PYTHON_USEDEP}]
+ >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}]
+ >=net-libs/google-cloud-cpp-0.10.0
+ >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}]
+ >=sci-libs/keras-preprocessing-1.1.0[${PYTHON_USEDEP}]
+ >=sci-visualization/tensorboard-2.3.0[${PYTHON_USEDEP}]
+ dev-python/dill[${PYTHON_USEDEP}]
+ dev-python/tblib[${PYTHON_USEDEP}]
+ )"
+DEPEND="${RDEPEND}
+ python? (
+ dev-python/mock
+ dev-python/setuptools
+ )"
+PDEPEND="python? (
+ >=sci-libs/tensorflow-estimator-2.3.0[${PYTHON_USEDEP}]
+ )"
+BDEPEND="
+ app-arch/unzip
+ >=dev-libs/protobuf-3.8.0
+ dev-java/java-config
+ dev-lang/swig
+ =dev-util/bazel-3*
+ cuda? (
+ >=dev-util/nvidia-cuda-toolkit-9.1[profiler]
+ )
+ !python? ( dev-lang/python )
+ python? (
+ dev-python/cython
+ dev-python/mock
+ >=dev-python/grpcio-tools-1.28
+ )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md )
+CHECKREQS_MEMORY="5G"
+CHECKREQS_DISK_BUILD="10G"
+
+get-cpu-flags() {
+ local i f=()
+ # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc.
+ for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do
+ use cpu_flags_x86_${i} && f+=( -m${i/_/.} )
+ done
+ use cpu_flags_x86_fma3 && f+=( -mfma )
+ echo "${f[*]}"
+}
+
+pkg_setup() {
+ ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities"
+ ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:"
+ ewarn "https://www.tensorflow.org/guide/migrate"
+
+ local num_pythons_enabled
+ num_pythons_enabled=0
+ count_impls(){
+ num_pythons_enabled=$((${num_pythons_enabled} + 1))
+ }
+ use python && python_foreach_impl count_impls
+
+ # 10G to build C/C++ libs, 5G per python impl
+ CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G"
+ check-reqs_pkg_setup
+}
+
+src_unpack() {
+ # Only unpack the main distfile
+ unpack "${P}.tar.gz"
+ unpack tensorflow-patches-${PVR}.tar.bz2
+ bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ append-flags $(get-cpu-flags)
+ bazel_setup_bazelrc
+
+ eapply "${WORKDIR}"/patches/*.patch
+
+ # Relax version checks in setup.py
+ sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py || die
+ sed -i "/config_googleapis/d" WORKSPACE || die
+
+ # Prefixify hard-coded command locations
+ hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl
+
+ default
+ use python && python_copy_sources
+
+ use cuda && cuda_add_sandbox
+}
+
+src_configure() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_configure() {
+ export CC_OPT_FLAGS=" "
+ export TF_ENABLE_XLA=$(usex xla 1 0)
+ export TF_NEED_OPENCL_SYCL=0
+ export TF_NEED_OPENCL=0
+ export TF_NEED_COMPUTECPP=0
+ export TF_NEED_ROCM=0
+ export TF_NEED_MPI=$(usex mpi 1 0)
+ export TF_SET_ANDROID_WORKSPACE=0
+
+ if use python; then
+ export PYTHON_BIN_PATH="${PYTHON}"
+ export PYTHON_LIB_PATH="$(python_get_sitedir)"
+ else
+ export PYTHON_BIN_PATH="$(which python)"
+ export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')"
+ fi
+
+ export TF_NEED_CUDA=$(usex cuda 1 0)
+ export TF_DOWNLOAD_CLANG=0
+ export TF_CUDA_CLANG=0
+ export TF_NEED_TENSORRT=0
+ if use cuda; then
+ export TF_CUDA_PATHS="${EPREFIX}/opt/cuda"
+ export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)"
+ export TF_CUDA_VERSION="$(cuda_toolkit_version)"
+ export TF_CUDNN_VERSION="$(cuda_cudnn_version)"
+ einfo "Setting CUDA version: $TF_CUDA_VERSION"
+ einfo "Setting CUDNN version: $TF_CUDNN_VERSION"
+
+ if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then
+ ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler"
+ ewarn "version is not supported by the currently installed CUDA. TensorFlow will"
+ ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}."
+ ewarn "If the build fails with linker errors try rebuilding the relevant"
+ ewarn "dependencies using the same compiler version."
+ fi
+
+ if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then
+ ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0."
+ ewarn "These may not be optimal for your GPU."
+ ewarn ""
+ ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU,"
+ ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow."
+ ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5"
+ ewarn ""
+ ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus"
+ ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'"
+ fi
+ fi
+
+ # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2
+ local SYSLIBS=(
+ absl_py
+ astor_archive
+ astunparse_archive
+ boringssl
+ com_github_googleapis_googleapis
+ com_github_googlecloudplatform_google_cloud_cpp
+ com_github_grpc_grpc
+ com_google_protobuf
+ curl
+ cython
+ dill_archive
+ double_conversion
+ enum34_archive
+ flatbuffers
+ functools32_archive
+ gast_archive
+ gif
+ hwloc
+ icu
+ jsoncpp_git
+ libjpeg_turbo
+ lmdb
+ nasm
+ nsync
+ opt_einsum_archive
+ org_sqlite
+ pasta
+ pcre
+ png
+ pybind11
+ six_archive
+ snappy
+ swig
+ tblib_archive
+ termcolor_archive
+ wrapt
+ zlib
+ )
+
+ export TF_SYSTEM_LIBS="${SYSLIBS[@]}"
+ export TF_IGNORE_MAX_BAZEL_VERSION=1
+
+ # This is not autoconf
+ ./configure || die
+
+ echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die
+ echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die
+
+ for cflag in $(pkg-config jsoncpp --cflags)
+ do
+ echo "build --copt=\"$cflag\"" >> .bazelrc || die
+ echo "build --host_copt=\"$cflag\"" >> .bazelrc || die
+ done
+ }
+ if use python; then
+ python_foreach_impl run_in_build_dir do_configure
+ else
+ do_configure
+ fi
+}
+
+src_compile() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ if use python; then
+ python_setup
+ BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}"
+ fi
+
+ # fail early if any deps are missing
+ ebazel build -k --nobuild \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so \
+ //tensorflow:libtensorflow_cc.so \
+ $(usex python '//tensorflow/tools/pip_package:build_pip_package' '')
+
+ ebazel build \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so
+ ebazel build //tensorflow:libtensorflow_cc.so
+
+ do_compile() {
+ ebazel build //tensorflow/tools/pip_package:build_pip_package
+ }
+ BUILD_DIR="${S}"
+ cd "${BUILD_DIR}"
+ use python && python_foreach_impl run_in_build_dir do_compile
+ ebazel shutdown
+}
+
+src_install() {
+ local i j
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_install() {
+ einfo "Installing ${EPYTHON} files"
+ local srcdir="${T}/src-${MULTIBUILD_VARIANT}"
+ mkdir -p "${srcdir}" || die
+ bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die
+ cd "${srcdir}" || die
+ esetup.py install
+
+ # libtensorflow_framework.so is in /usr/lib already
+ rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die
+ rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die
+ python_optimize
+ }
+
+ if use python; then
+ python_foreach_impl run_in_build_dir do_install
+
+ # Symlink to python-exec scripts
+ for i in "${ED}"/usr/lib/python-exec/*/*; do
+ n="${i##*/}"
+ [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}"
+ done
+
+ python_setup
+ local BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}" || die
+ fi
+
+ einfo "Installing headers"
+ ebazel build //tensorflow:install_headers
+ ebazel shutdown
+ insinto /usr/include/${PN}/
+ doins -r bazel-bin/tensorflow/include/*
+
+ einfo "Installing libs"
+ # Generate pkg-config file
+ ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die
+ insinto /usr/$(get_libdir)/pkgconfig
+ doins ${PN}.pc ${PN}_cc.pc
+
+ for l in libtensorflow{,_framework,_cc}.so; do
+ dolib.so bazel-bin/tensorflow/${l}
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1)
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3)
+ done
+
+ einstalldocs
+}
diff --git a/sci-libs/tensorflow/tensorflow-2.3.1.ebuild b/sci-libs/tensorflow/tensorflow-2.3.1.ebuild
new file mode 100644
index 00000000000..657eb270e10
--- /dev/null
+++ b/sci-libs/tensorflow/tensorflow-2.3.1.ebuild
@@ -0,0 +1,405 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DISTUTILS_OPTIONAL=1
+PYTHON_COMPAT=( python3_{6,7,8} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+MY_PV=${PV/_rc/-rc}
+MY_P=${PN}-${MY_PV}
+
+inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs
+
+DESCRIPTION="Computation framework using data flow graphs for scalable machine learning"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda mpi +python xla"
+CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4"
+for i in $CPU_USE_FLAGS_X86; do
+ IUSE+=" cpu_flags_x86_$i"
+done
+
+# distfiles that bazel uses for the workspace, will be copied to basel-distdir
+bazel_external_uris="
+ https://github.com/petewarden/OouraFFT/archive/v1.0.tar.gz -> OouraFFT-v1.0.tar.gz
+ https://gitlab.com/libeigen/eigen/-/archive/386d809bde475c65b7940f290efe80e6a05878c4/eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz
+ https://github.com/abseil/abseil-cpp/archive/df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz -> abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz
+ https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz
+ https://github.com/bazelbuild/rules_apple/archive/5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz -> bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz
+ https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip -> bazelbuild-rules_android-v0.1.1.zip
+ https://github.com/bazelbuild/apple_support/archive/501b4afb27745c4813a88ffa28acd901408014e4.tar.gz -> bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz
+ https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz
+ https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip
+ https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz
+ https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz
+ https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip
+ https://github.com/bazelbuild/rules_proto/archive/97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz -> bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz
+ https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz
+ https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz -> bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz
+ https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz
+ https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz
+ https://github.com/google/gemmlowp/archive/fda83bdc38b118cc6b56753bd540caa49e570745.zip -> gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip
+ https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz
+ https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz
+ https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz
+ https://github.com/llvm/llvm-project/archive/7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz -> llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz
+ https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz
+ https://github.com/google/ruy/archive/34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip -> ruy-34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip
+ https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz -> pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz
+ https://github.com/pytorch/cpuinfo/archive/6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip -> pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip
+ cuda? (
+ https://github.com/nvidia/nccl/archive/5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz -> nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz
+ https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip
+ )
+ python? (
+ https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz
+ https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt
+ https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz
+ )"
+
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+ https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PVR}.tar.bz2
+ ${bazel_external_uris}"
+
+RDEPEND="
+ app-arch/snappy
+ dev-db/lmdb
+ dev-db/sqlite
+ dev-libs/double-conversion
+ dev-libs/icu
+ >=dev-libs/jsoncpp-1.9.2
+ dev-libs/libpcre
+ dev-libs/nsync
+ dev-libs/openssl:0=
+ >=dev-libs/protobuf-3.8.0:=
+ >=dev-libs/re2-0.2019.06.01
+ media-libs/giflib
+ media-libs/libjpeg-turbo
+ media-libs/libpng:0
+ >=net-libs/grpc-1.28
+ net-misc/curl
+ sys-libs/zlib
+ >=sys-apps/hwloc-2
+ cuda? (
+ || (
+ ( =dev-util/nvidia-cuda-toolkit-10.2*[profiler] =dev-libs/cudnn-7* )
+ ( =dev-util/nvidia-cuda-toolkit-10.1*[profiler] =dev-libs/cudnn-7* )
+ ( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* )
+ ( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* )
+ ( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* )
+ )
+ )
+ mpi? ( virtual/mpi )
+ python? (
+ ${PYTHON_DEPS}
+ >=dev-libs/flatbuffers-1.12.0:=
+ dev-python/absl-py[${PYTHON_USEDEP}]
+ >=dev-python/astor-0.7.1[${PYTHON_USEDEP}]
+ dev-python/astunparse[${PYTHON_USEDEP}]
+ >=dev-python/gast-0.3.3[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.19[${PYTHON_USEDEP}]
+ >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}]
+ dev-python/opt-einsum[${PYTHON_USEDEP}]
+ >=dev-python/protobuf-python-3.8.0[${PYTHON_USEDEP}]
+ dev-python/pybind11[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ dev-python/termcolor[${PYTHON_USEDEP}]
+ >=dev-python/grpcio-1.28[${PYTHON_USEDEP}]
+ >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}]
+ >=net-libs/google-cloud-cpp-0.10.0
+ >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}]
+ >=sci-libs/keras-preprocessing-1.1.0[${PYTHON_USEDEP}]
+ >=sci-visualization/tensorboard-2.3.0[${PYTHON_USEDEP}]
+ dev-python/dill[${PYTHON_USEDEP}]
+ dev-python/tblib[${PYTHON_USEDEP}]
+ )"
+DEPEND="${RDEPEND}
+ python? (
+ dev-python/mock
+ dev-python/setuptools
+ )"
+PDEPEND="python? (
+ >=sci-libs/tensorflow-estimator-2.3.0[${PYTHON_USEDEP}]
+ )"
+BDEPEND="
+ app-arch/unzip
+ >=dev-libs/protobuf-3.8.0
+ dev-java/java-config
+ dev-lang/swig
+ =dev-util/bazel-3*
+ cuda? (
+ >=dev-util/nvidia-cuda-toolkit-9.1[profiler]
+ )
+ !python? ( dev-lang/python )
+ python? (
+ dev-python/cython
+ dev-python/mock
+ >=dev-python/grpcio-tools-1.28
+ )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md )
+CHECKREQS_MEMORY="5G"
+CHECKREQS_DISK_BUILD="10G"
+
+get-cpu-flags() {
+ local i f=()
+ # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc.
+ for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do
+ use cpu_flags_x86_${i} && f+=( -m${i/_/.} )
+ done
+ use cpu_flags_x86_fma3 && f+=( -mfma )
+ echo "${f[*]}"
+}
+
+pkg_setup() {
+ ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities"
+ ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:"
+ ewarn "https://www.tensorflow.org/guide/migrate"
+
+ local num_pythons_enabled
+ num_pythons_enabled=0
+ count_impls(){
+ num_pythons_enabled=$((${num_pythons_enabled} + 1))
+ }
+ use python && python_foreach_impl count_impls
+
+ # 10G to build C/C++ libs, 5G per python impl
+ CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G"
+ check-reqs_pkg_setup
+}
+
+src_unpack() {
+ # Only unpack the main distfile
+ unpack "${P}.tar.gz"
+ unpack tensorflow-patches-${PVR}.tar.bz2
+ bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ append-flags $(get-cpu-flags)
+ bazel_setup_bazelrc
+
+ eapply "${WORKDIR}"/patches/*.patch
+
+ # Relax version checks in setup.py
+ sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py || die
+ sed -i "/config_googleapis/d" WORKSPACE || die
+
+ # Prefixify hard-coded command locations
+ hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl
+
+ default
+ use python && python_copy_sources
+
+ use cuda && cuda_add_sandbox
+}
+
+src_configure() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_configure() {
+ export CC_OPT_FLAGS=" "
+ export TF_ENABLE_XLA=$(usex xla 1 0)
+ export TF_NEED_OPENCL_SYCL=0
+ export TF_NEED_OPENCL=0
+ export TF_NEED_COMPUTECPP=0
+ export TF_NEED_ROCM=0
+ export TF_NEED_MPI=$(usex mpi 1 0)
+ export TF_SET_ANDROID_WORKSPACE=0
+
+ if use python; then
+ export PYTHON_BIN_PATH="${PYTHON}"
+ export PYTHON_LIB_PATH="$(python_get_sitedir)"
+ else
+ export PYTHON_BIN_PATH="$(which python)"
+ export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')"
+ fi
+
+ export TF_NEED_CUDA=$(usex cuda 1 0)
+ export TF_DOWNLOAD_CLANG=0
+ export TF_CUDA_CLANG=0
+ export TF_NEED_TENSORRT=0
+ if use cuda; then
+ export TF_CUDA_PATHS="${EPREFIX}/opt/cuda"
+ export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)"
+ export TF_CUDA_VERSION="$(cuda_toolkit_version)"
+ export TF_CUDNN_VERSION="$(cuda_cudnn_version)"
+ einfo "Setting CUDA version: $TF_CUDA_VERSION"
+ einfo "Setting CUDNN version: $TF_CUDNN_VERSION"
+
+ if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then
+ ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler"
+ ewarn "version is not supported by the currently installed CUDA. TensorFlow will"
+ ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}."
+ ewarn "If the build fails with linker errors try rebuilding the relevant"
+ ewarn "dependencies using the same compiler version."
+ fi
+
+ if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then
+ ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0."
+ ewarn "These may not be optimal for your GPU."
+ ewarn ""
+ ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU,"
+ ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow."
+ ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5"
+ ewarn ""
+ ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus"
+ ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'"
+ fi
+ fi
+
+ # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2
+ local SYSLIBS=(
+ absl_py
+ astor_archive
+ astunparse_archive
+ boringssl
+ com_github_googleapis_googleapis
+ com_github_googlecloudplatform_google_cloud_cpp
+ com_github_grpc_grpc
+ com_google_protobuf
+ curl
+ cython
+ dill_archive
+ double_conversion
+ enum34_archive
+ flatbuffers
+ functools32_archive
+ gast_archive
+ gif
+ hwloc
+ icu
+ jsoncpp_git
+ libjpeg_turbo
+ lmdb
+ nasm
+ nsync
+ opt_einsum_archive
+ org_sqlite
+ pasta
+ pcre
+ png
+ pybind11
+ six_archive
+ snappy
+ swig
+ tblib_archive
+ termcolor_archive
+ wrapt
+ zlib
+ )
+
+ export TF_SYSTEM_LIBS="${SYSLIBS[@]}"
+ export TF_IGNORE_MAX_BAZEL_VERSION=1
+
+ # This is not autoconf
+ ./configure || die
+
+ echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die
+ echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die
+
+ for cflag in $(pkg-config jsoncpp --cflags)
+ do
+ echo "build --copt=\"$cflag\"" >> .bazelrc || die
+ echo "build --host_copt=\"$cflag\"" >> .bazelrc || die
+ done
+ }
+ if use python; then
+ python_foreach_impl run_in_build_dir do_configure
+ else
+ do_configure
+ fi
+}
+
+src_compile() {
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ if use python; then
+ python_setup
+ BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}"
+ fi
+
+ # fail early if any deps are missing
+ ebazel build -k --nobuild \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so \
+ //tensorflow:libtensorflow_cc.so \
+ $(usex python '//tensorflow/tools/pip_package:build_pip_package' '')
+
+ ebazel build \
+ //tensorflow:libtensorflow_framework.so \
+ //tensorflow:libtensorflow.so
+ ebazel build //tensorflow:libtensorflow_cc.so
+
+ do_compile() {
+ ebazel build //tensorflow/tools/pip_package:build_pip_package
+ }
+ BUILD_DIR="${S}"
+ cd "${BUILD_DIR}"
+ use python && python_foreach_impl run_in_build_dir do_compile
+ ebazel shutdown
+}
+
+src_install() {
+ local i j
+ export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+ do_install() {
+ einfo "Installing ${EPYTHON} files"
+ local srcdir="${T}/src-${MULTIBUILD_VARIANT}"
+ mkdir -p "${srcdir}" || die
+ bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die
+ cd "${srcdir}" || die
+ esetup.py install
+
+ # libtensorflow_framework.so is in /usr/lib already
+ rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die
+ rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die
+ python_optimize
+ }
+
+ if use python; then
+ python_foreach_impl run_in_build_dir do_install
+
+ # Symlink to python-exec scripts
+ for i in "${ED}"/usr/lib/python-exec/*/*; do
+ n="${i##*/}"
+ [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}"
+ done
+
+ python_setup
+ local BUILD_DIR="${S}-${EPYTHON/./_}"
+ cd "${BUILD_DIR}" || die
+ fi
+
+ einfo "Installing headers"
+ ebazel build //tensorflow:install_headers
+ ebazel shutdown
+ insinto /usr/include/${PN}/
+ doins -r bazel-bin/tensorflow/include/*
+
+ einfo "Installing libs"
+ # Generate pkg-config file
+ ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die
+ insinto /usr/$(get_libdir)/pkgconfig
+ doins ${PN}.pc ${PN}_cc.pc
+
+ for l in libtensorflow{,_framework,_cc}.so; do
+ dolib.so bazel-bin/tensorflow/${l}
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1)
+ dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3)
+ done
+
+ einstalldocs
+}
diff --git a/sci-libs/xkaapi/Manifest b/sci-libs/xkaapi/Manifest
index 798a45f9501..1cc539d30a8 100644
--- a/sci-libs/xkaapi/Manifest
+++ b/sci-libs/xkaapi/Manifest
@@ -1,3 +1,2 @@
-DIST xkaapi-2.1.tar.gz 2916405 BLAKE2B a3bbba6ed5575ed617b2fdbfec435c72ac12e8f464e5a25263fac38f049bd1b89bb5df6e526c2fa537e16fd5bd04fa3cd1ad39f56cf1a58da0f3ba75fd55c580 SHA512 5d4db7576d449b086677bcc686595da773da2c0db155aa0d0039f57fb379bfc166a35b139992416a3f44bdbccbf9f48688b3d3050eea77a258f2a395d7867b26
DIST xkaapi-2.2.tar.gz 2858464 BLAKE2B 909ea71e3fe86ee6614724793a5a41edd03151025b50e1e99dcf262be9022dfdc8cfef636de4814db1fec99e97015b73f4e5ed8f45ad377e4a3a4ab46b54ee93 SHA512 1be98c4e3c50cf198ec3522c7ccbe7757464889b32fb39e53447548fc2975e727fb2b68b25ae99c367b155588b1ab2181e3280d099ceb991929aa2f0e9c83f0c
DIST xkaapi-3.0.3.tar.gz 1535482 BLAKE2B 6f10395b66d334e235df8dec7cfa4fa128aceeac10846e78c02cc96867fb2c649a0dc88f6a64d9c5afbfb97a02221f4e6971f313bb6ca52d217aae39caa26327 SHA512 28fb02a73269e55eec90b5c2c82e4ade3bfb24d55a1f61ac6bf47da4c7e2d864cfa1389772baca9ebef4f24b3373fb6971f3fe98a4d232187e9d29a88110eda1
diff --git a/sci-libs/xkaapi/xkaapi-2.1.ebuild b/sci-libs/xkaapi/xkaapi-2.1.ebuild
deleted file mode 100644
index 02fd2e03500..00000000000
--- a/sci-libs/xkaapi/xkaapi-2.1.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-AUTOTOOLS_AUTORECONF=true
-
-inherit autotools-utils fortran-2
-
-UPSTREAM_NO=32735
-
-DESCRIPTION="Kernel for Adaptative, Asynchronous Parallel and Interactive programming"
-HOMEPAGE="http://kaapi.gforge.inria.fr"
-SRC_URI="https://gforge.inria.fr/frs/download.php/${UPSTREAM_NO}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="CeCILL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="blas cxx fortran gpu openmp static-libs"
-
-RDEPEND="
- sys-apps/hwloc
- dev-libs/libffi
-"
-DEPEND="${RDEPEND}
-"
-
-PATCHES=(
- "${FILESDIR}"/${P}-flags.patch
- "${FILESDIR}"/${P}-ffi.patch
- )
-
-src_prepare() {
- sed \
- -e 's:-Werror::g' \
- -i tests/testsuite* tests/*/*.am || die
- autotools-utils_src_prepare
-}
-
-src_configure() {
- local myeconfargs=(
- --enable-mode=gentoo
- --enable-api-kaapic
- --enable-api-quark
- --with-ccache=no
- --enable-hwloc
- --with-libffi="${EPREFIX}"/usr
- --enable-target$(usex gpu gpu mt)
- $(use_enable fortran api-kaapif)
- $(use_enable cxx api-kaapixx)
- $(use_enable blas kblas)
- $(use_enable openmp libkomp)
-# $(use_with plasma "${EPREFIX}"/usr)
- )
- autotools-utils_src_configure
-}
diff --git a/sci-libs/xylib/Manifest b/sci-libs/xylib/Manifest
index 63c79c4b23a..155161a52da 100644
--- a/sci-libs/xylib/Manifest
+++ b/sci-libs/xylib/Manifest
@@ -1 +1 @@
-DIST xylib-1.2.tar.bz2 297167 BLAKE2B f30a397aea282626b2e5ea93053571ed6d617b4fdeff468751fed9c9f538595854c948d0f50656ce22dbadfe4ff99a59dc4a5fb70686e78c084bbe1db1c9c11a SHA512 16eaa4b37014914c75ca3d0188aaf236c342887c03e233a9bb770412b3bb16da6779ab82c8acd66677d98ada75537c77d1abad723defd33dbe6eda78c6c88b91
+DIST xylib-1.6.tar.bz2 370765 BLAKE2B 76eb968f06a6a015ed7a29a493d888642767cda103733498b8706c973498aa4ac8576716b06f6eae8d95a1f625e9cd91ab02cfd53146d976e32fc9295f3c502f SHA512 9861cbf03f8b921a93a2d32a529ff94d77723e2510cd61096b4b85f91af4be6330ed82e8da94bc45dbca7f9814077360d1dae204315b28c2b6d85e3d2c7f6696
diff --git a/sci-libs/xylib/xylib-1.2.ebuild b/sci-libs/xylib/xylib-1.2.ebuild
deleted file mode 100644
index ed9ee753d6c..00000000000
--- a/sci-libs/xylib/xylib-1.2.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools-utils
-
-DESCRIPTION="Experimental x-y data reading library"
-HOMEPAGE="http://www.unipress.waw.pl/fityk/xylib/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="LGPL-2.1"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="bzip2 static-libs zlib"
-
-RDEPEND="
- dev-libs/boost
- bzip2? ( app-arch/bzip2 )
- zlib? ( sys-libs/zlib )"
-DEPEND="${RDEPEND}"
-
-src_configure() {
- local myeconfargs=(
- $(use_with bzip2 bzlib)
- $(use_with zlib)
- )
- autotools-utils_src_configure
-}
diff --git a/sci-libs/xylib/xylib-1.6.ebuild b/sci-libs/xylib/xylib-1.6.ebuild
new file mode 100644
index 00000000000..49e226d2694
--- /dev/null
+++ b/sci-libs/xylib/xylib-1.6.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+WX_GTK_VER=3.0-gtk3
+
+inherit wxwidgets
+
+DESCRIPTION="Experimental x-y data reading library"
+HOMEPAGE="https://github.com/wojdyr/xylib"
+SRC_URI="https://github.com/wojdyr/xylib/releases/download/v${PV}/${P}.tar.bz2"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="bzip2 gui zlib"
+
+RDEPEND="
+ bzip2? ( app-arch/bzip2 )
+ gui? ( x11-libs/wxGTK:${WX_GTK_VER} )
+ zlib? ( sys-libs/zlib )"
+DEPEND="
+ ${RDEPEND}
+ dev-libs/boost"
+
+src_configure() {
+ use gui && setup-wxwidgets
+
+ econf \
+ --disable-static \
+ $(use_with bzip2 bzlib) \
+ $(use_with gui) \
+ $(use_with zlib)
+}
+
+src_install() {
+ default
+
+ # no static archives
+ find "${ED}" -name '*.la' -delete || die
+}