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* sci-biology/samtools: Add missing -I. to CPPFLAGSDavid Seifert2017-09-021-1/+1
| | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=629666 Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-biology/samtools: Remove oldDavid Seifert2017-09-026-1499/+0
| | | | | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=548170 Bug: https://bugs.gentoo.org/show_bug.cgi?id=620618 Bug: https://bugs.gentoo.org/show_bug.cgi?id=625504 Package-Manager: Portage-2.3.8, Repoman-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/5593
* sci-biology/samtools: Version bump to 1.5David Seifert2017-09-021-0/+413
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-biology/samtools: version bump to 1.3, to match htslibDavid Seifert2016-03-282-0/+911
| | | | | | | | * EAPI=6 * Added modern AX_WITH_CURSES that works with pkg-config * Fixed incorrect symlinks for libbam.so Package-Manager: portage-2.2.28
* sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versionsDavid Seifert2016-03-281-10/+10
| | | | Package-Manager: portage-2.2.28
* sci-biology/samtools: Version bump to 0.1.20David Seifert2016-03-281-0/+206
| | | | | | | | | * EAPI=6 * samtools will be slotted with SLOT="legacy", in order to be able to install applications that rely on the old monolithic library. Package-Manager: portage-2.2.28
* proj/gentoo: Initial commitRobin H. Johnson2015-08-084-0/+588
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed