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* sci-libs/trilinos: fix automagic dependencyMatthias Maier2019-08-061-0/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix metadata.xmlMatthias Maier2019-08-061-2/+1
| | | | | Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: [QA] fix package atom in metadata.xmlMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: ebuild maintenanceMatthias Maier2019-08-053-12/+60
| | | | | | | | | | | * remove local description in metadata * avoid warning about unused variable * do not export LDFLAGS in pc files Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: ebuild maintenanceMatthias Maier2019-08-052-7/+5
| | | | | | | | | | | | | * fix rm/mv paths to clean up installation * remove obsolete configuration options * skip setting an RPATH * fix metadata Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix typoMatthias Maier2019-08-051-1/+1
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: package migration from ::science overlayMatthias Maier2019-08-054-0/+337
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: package migration from ::science overlayMatthias Maier2019-08-053-0/+260
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: package migration from ::science overlayMatthias Maier2019-08-053-0/+95
| | | | | Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/med: package migration from ::science overlayMatthias Maier2019-08-053-0/+61
| | | | | | | | | | * version bump * new upsteam website and repo * EAPI=7 * fixup installation Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/openblas: use pkg_setup to do the build env and checks.Benda Xu2019-08-041-26/+21
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: Allow custom CFLAGS and add fortran checks.Benda Xu2019-08-042-9/+23
| | | | | | | | | Drop unused USE flags. Suggested-By: Hasan ÇALIŞIR <hasan.calisir@psauxit.com> Closes: https://github.com/gentoo/gentoo/pull/12576 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scikits_timeseries: Works with py3.7Alexey Shvetsov2019-08-031-0/+47
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_optimization: Works with py3.7Alexey Shvetsov2019-08-031-0/+31
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_learn: Works with py3.7Alexey Shvetsov2019-08-031-0/+106
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits_image: Works with py3.7Alexey Shvetsov2019-08-031-0/+57
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scikits: Works with py3.7Alexey Shvetsov2019-08-031-0/+34
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/tensorflow-1.14.0-r1: Fix build issuesJason Zaman2019-08-035-6/+146
| | | | | | | | | | | | | | - Header paths were mangled - Jsoncpp-1.9 build error - Newer GRPC needed a bumped google-cloud-cpp dep - Build failed with python2 if future was not installed - Add tensorflow_cc pkgconfig file Closes: https://bugs.gentoo.org/688594 Closes: https://bugs.gentoo.org/689282 Closes: https://bugs.gentoo.org/690212 Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/{blis,mkl-rt}: Add Gentoo Science Project as maintainer.Benda Xu2019-08-012-0/+8
| | | | | | Closes: https://bugs.gentoo.org/691128 Package-Manager: Portage-2.3.69, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libcerf: Drop 1.3 and 1.4Andreas Sturmlechner2019-07-313-44/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libcerf: x86 stable wrt bug #685690Agostino Sarubbo2019-07-311-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/cantera: remove 2.4.0-r0 as request by proxy-maintainerMatthias Maier2019-07-302-157/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: remove dangling whitespace in metadata.xmlMatthias Maier2019-07-301-1/+1
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: drop oldMatthias Maier2019-07-307-716/+0
| | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: fix LICENSE installation patchesband-a-prend2019-07-302-2/+12
| | | | | | | | | Sundials 4.x add NOTICE files besides LICENSE files and current fix-licence-patches contain only fix for installation path of NOTICE files and don't fix payhs for LICENSE. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/shapelib: arm64 stableAaron Bauman2019-07-291-2/+2
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/libcerf: arm stable wrt bug #685690Mikle Kolyada2019-07-291-1/+1
| | | | | | Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/lmfit: arm stable wrt bug #687240Mikle Kolyada2019-07-281-1/+1
| | | | | | Package-Manager: Portage-2.3.66, Repoman-2.3.16 RepoMan-Options: --include-arches="arm" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/openblas-0.3.6: add index-64bit support.Mo Zhou2019-07-242-3/+16
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/12475 Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: remove 0.3.5 version.Mo Zhou2019-07-242-106/+0
| | | | | Signed-off-by: Mo Zhou <cdluminate@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.0Andreas Sturmlechner2019-07-232-74/+0
| | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11
* sci-libs/libgeotiff: arm64 stable (bug #688806)Aaron Bauman2019-07-231-1/+1
| | | | | | Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64"
* sci-libs/cantera: 2.4.0-r1. Switch to EAPI 7band-a-prend2019-07-191-4/+4
| | | | | Closes: https://github.com/gentoo/gentoo/pull/12303 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Update/merge cantera_* patchesband-a-prend2019-07-192-6/+32
| | | | | | | | | Update "libdirname" patch with upstream [1] and merge it with "env" patch. [1] https://github.com/Cantera/cantera/pull/661 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Fix 'fatal' warningband-a-prend2019-07-191-1/+14
| | | | | | | | | | | | | | The SConstruct script contains block that tries to evaluate 'git rev-parse --short HEAD` comand and returns the "fatal: not a git repository (or any parent up to mount point /var/tmp)" warning from git command itself if git is installed in system. It occurs because the release package archive doesn't contain ".git" directory. This behaviour doesn't affect emerge process but can confuse in the case of other issues. Closes: https://bugs.gentoo.org/689998 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Add PYTHON_COMPAT=( python3_7 )band-a-prend2019-07-191-1/+1
| | | | | | | | | | After updated dev-util/scons (scons-3.0.5-r1.ebuild) now it's possible to build Cantera with Python 3.7. All tests of src_test() phase are passed. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Fix ebuild to satisfy GLEP73BackAlterationband-a-prend2019-07-191-1/+1
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Enable build with sci-libs/sundials-3.2.xband-a-prend2019-07-192-10/+38
| | | | | | | | | | | | | | | | | | | This patch moves early applied 'sed' patches from src_prepare() to external patch-file and allows to build Cantera 2.4.0 with sci-libs/sundials-3.2.x since this version of Sundials is compatible with Sundials 3.1 and doesn't require to rebuild Cantera after it's upgrade from Sundials 3.1 to Sundials 3.2. It was tested that Cantera successfuly build with Sundials-3.2.1 (that not in portage tree yet) and internal tests passed after "ebuild compile" with Sundials 3.1.2 and "ebuild test" phase after intallation of the Sundials 3.2.1 into system. Note that Cantera 2.4.0 isn't compatible with Sundials 4.y branch so there is a restriction for RDEPEND sci-libs/sundials-4.0.0 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Restrict RDEPEND <sci-libs/sundials-3.2.0:0=band-a-prend2019-07-191-1/+1
| | | | | | | | | | Since the Cantera 2.4.0 release was early than Sundials 3.2.0 the build script of Cantera has internal checking that installed Sundials version isn't greater than 3.1. New RDEPEND rectriction is just to avoid failure of prepare ebuild phase. Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: 2.4.0-r1. Disable default optimization flag "-O3"band-a-prend2019-07-191-0/+130
| | | | | | | | | | By default the optimization flag "-O3" was used with warning "-Wno-inline". The addition of expicit build option optimize_flags="-Wno-inline" now disables default "-O3" optimization flag in favor of options taken from "make.conf". Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cgnslib: Fixed wrong static lib pathSlawomir Lis2019-07-191-2/+2
| | | | | | | Reported in bug #667050 Package-Manager: Portage-2.3.69, Repoman-2.3.14 Signed-off-by: Slawek Lis <slis@gentoo.org>
* sci-libs/cgnslib: version bump to 3.4.0Slawomir Lis2019-07-192-0/+77
| | | | | | | This should also fix bug #662210 Package-Manager: Portage-2.3.69, Repoman-2.3.14 Signed-off-by: Slawek Lis <slis@gentoo.org>
* */*: Add maintainer-needed comment to all unmaintained packagesMichał Górny2019-07-171-0/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/sundials: fix makefile generator for EAPI7band-a-prend2019-07-163-0/+3
| | | | | | | | Force to use emake as cmake makefile generator instead of default ninja for EAPI7 to fix Fortran configuration error. Closes: https://github.com/gentoo/gentoo/pull/12455 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: fix patchesMatthias Maier2019-07-152-2/+2
| | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: Port to EAPI 7Matthias Maier2019-07-153-9/+9
| | | | | Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 4.1.0 version bumpband-a-prend2019-07-153-0/+84
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 4.0.2 version bumpband-a-prend2019-07-153-0/+84
| | | | | Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: 3.2.1 version bumpband-a-prend2019-07-153-0/+82
| | | | | | | | | | | | | | | | | | This commit adds 'sci-libs/sundials-3.2.1' and replaces 'versionator' with 'eapi7-ver' in 'inherit' section. It seems that the block: if [[ lib != $(get_libdir) ]]; then mv "${ED%/}"/usr/lib "${ED%/}"/usr/$(get_libdir) || die fi within 'src_install()' section isn't required anymore since sundials-3.2.1 so it's removed here. Closes: https://github.com/gentoo/gentoo/pull/12309 Signed-off-by: Sergey Torokhov <torokhov_s_a@mail.ru> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/nfft: Sort KEYWORDSMichał Górny2019-07-151-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>