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* sci-libs/scotch: add 6.1.2Sam James2021-12-262-0/+175
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scotch: enable threads by default in 6.1.1Sam James2021-12-261-1/+1
| | | | | | Tests need it and it seems reasonable to want them too. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/flann: adjust patch referenceSam James2021-12-261-1/+1
| | | | | Bug: https://bugs.gentoo.org/827263 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/flann: fix pkgconfig file format (no semicolons)Sam James2021-12-262-1/+40
| | | | | | | | | | | | | | | Not sure why but a semicolon seems to have started appearing more recently, probably with a newer CMake version. Anyway, a problem from the past resurfaced (in a slightly different way, but same outcome). flann's malformed pkgconfig file was causing consumers to be underlinked against lz4 and libflann* (and usually fail to build). Closes: https://bugs.gentoo.org/827263 Closes: https://bugs.gentoo.org/829398 Bug: https://bugs.gentoo.org/681898 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: drop trailing full stop from DESCRIPTIONSam James2021-12-261-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dmlc-core: drop trailing full stop from DESCRIPTIONSam James2021-12-261-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/branca: drop trailing full stop from DESCRIPTIONSam James2021-12-261-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: Remove broken 2.7.0-r1Jason Zaman2021-12-242-413/+0
| | | | | | | | | | | 2.7.0-r1 moved to C++17 but has several issues. Remove for now until it can be fixed. Bug: https://bugs.gentoo.org/829114 Bug: https://bugs.gentoo.org/829588 Bug: https://bugs.gentoo.org/829716 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/gdal: add 3.4.0Sam James2021-12-222-0/+324
| | | | | Closes: https://bugs.gentoo.org/829775 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: drop versionsSam James2021-12-227-1887/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ginkgo: fix automagic hwloc dependencySam James2021-12-212-4/+6
| | | | | | | | | | | | It'll also try to download it if it can't find it on the system, so a revbump is worth it just for that as on some platforms we don't have network-sandbox (nor do we require it be used by users, even though they definitely should use it). But mainly for the automagic dep. Closes: https://bugs.gentoo.org/811384 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ginkgo: dep on dev-util/nvidia-cuda-toolkitDavid Seifert2021-12-201-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/dealii: dep on dev-util/nvidia-cuda-toolkitDavid Seifert2021-12-202-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/tensorflow: update cuda depsDavid Seifert2021-12-201-4/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: add 0.3.19Sam James2021-12-192-0/+198
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: ppc stable wrt bug #829332Agostino Sarubbo2021-12-171-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.3 ppc64, #829332Sam James2021-12-161-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: drop 3.20.1-r1Jakov Smolić2021-12-162-75/+0
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/libcifpp: Bump to 3.0.0Pacho Ramos2021-12-162-0/+33
| | | | | | Closes: https://bugs.gentoo.org/823914 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/libqalculate: stable 3.21.0 for sparc, bug #828935Rolf Eike Beer2021-12-161-1/+1
| | | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="sparc" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/bliss: New upstream releaseFrançois Bissey2021-12-153-0/+61
| | | | | | | | Closes: https://bugs.gentoo.org/829119 Closes: https://github.com/gentoo/gentoo/pull/23284 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fftw: stable 3.3.10 for hppa, bug #821916Rolf Eike Beer2021-12-141-1/+1
| | | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: add version 0.8.1Andrew Ammerlaan2021-12-142-0/+87
| | | | | | Closes: https://bugs.gentoo.org/812194 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/vtk: bump to 9.1.0Bernd Waibel2021-12-142-0/+602
| | | | | | | | | Bug: https://bugs.gentoo.org/820593 Closes: https://bugs.gentoo.org/822780 Closes: https://bugs.gentoo.org/820521 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dealii: use < (upper bound) dep on BoostSam James2021-12-141-2/+1
| | | | | | | | Avoid confusing blockers. Bug: https://bugs.gentoo.org/820821 See: https://forums.gentoo.org/viewtopic-t-1146245.html Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: ppc64 stable wrt bug #828935Agostino Sarubbo2021-12-131-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/libqalculate: amd64 stable wrt bug #828935Agostino Sarubbo2021-12-131-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/sundials: amd64 stable wrt bug #828934Agostino Sarubbo2021-12-131-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/libqalculate: Stabilize 3.21.0 arm64, #828935Sam James2021-12-131-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-image: add missing tifffile dependencySam James2021-12-131-7/+4
| | | | | | Closes: https://bugs.gentoo.org/828967 Thanks-to: Alex Fan <alex.fan.q@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow-2.7.0-r1: Fix non-cuda build and unbundle abseil-cppJason Zaman2021-12-121-2/+3
| | | | | | Closes: https://bugs.gentoo.org/828996 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/lapack: remove unused patchMichael Mair-Keimberger2021-12-121-141/+0
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/23267 Package-Manager: Portage-3.0.29, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/libqalculate: Stabilize 3.21.0 x86, #828935Jakov Smolić2021-12-121-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/tensorflow: Build with C++17Jason Zaman2021-12-112-0/+412
| | | | | | | | | | | Also explicitly restrict tests because GPUs are required and DISTUTILS_USE_SETUPTOOLS is not used when DISTUTILS_OPTIONAL is enabled. Closes: https://bugs.gentoo.org/823922 Closes: https://bugs.gentoo.org/823918 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/hdf: Stabilize 4.2.15-r1 x86, #816390Jakov Smolić2021-12-101-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/hdf: Stabilize 4.2.15-r1 amd64, #816390Sam James2021-12-091-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/liborigin: no static libsAndrew Ammerlaan2021-12-082-7/+17
| | | | | | Closes: https://bugs.gentoo.org/828534 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hdf: keyword ~riscvYixun Lan2021-12-081-1/+1
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/hdf: fix riscv64 test errorYixun Lan2021-12-082-2/+3
| | | | | | | | | the original patch took from https://sources.debian.org/patches/libhdf4/4.2.15-4/riscv64.diff/ Bug: https://bugs.gentoo.org/664856 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/hdf: Keyword 4.2.15-r1 arm, #804927Sam James2021-12-081-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: Stabilize 4.2.15-r1 ppc, #816390Sam James2021-12-081-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.0 arm, #828397Sam James2021-12-081-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: fix typoSam James2021-12-081-1/+1
| | | | | | | Had switched it back to ${FILESDIR} to add an extra patch but forgot to switch it back again apparently. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: drop -riscv for 4.2.15-r1 with new arch. supportSam James2021-12-081-1/+1
| | | | | | | | | This should now support riscv, but will leave keywording for the arch team of course. But dropping -riscv as it's no longer known-broken. Bug: https://bugs.gentoo.org/664856 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: support additional architecturesSam James2021-12-082-0/+83
| | | | | | | | | | | | | | | | | | | | | | | Pull in patches from Fedora [0] and Debian [1] with some simple rebasing (added riscv, hppa, sparc64 by cherry-picking extra bits too). All references included in the respective patches within the patch tarball too. This should, in total, give us: - hppa - sparc{,64} - arm - arm64 - ppc - ppc64(le?) - s390 [0] https://src.fedoraproject.org/rpms/hdf/tree/rawhide [1] https://sources.debian.org/patches/libhdf4/4.2.15-4/ Bug: https://bugs.gentoo.org/664856 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/liborigin: fix header location in pc fileAndrew Ammerlaan2021-12-071-3/+13
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/liborigin: fix .pc fileAndrew Ammerlaan2021-12-071-0/+13
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/liborigin: add new snapshotAndrew Ammerlaan2021-12-073-0/+93
| | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fftw: x86 stable wrt bug #821916Agostino Sarubbo2021-12-071-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/scotch: Stabilize 6.1.0-r1 ppc, #818649Sam James2021-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>