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* sci-libs/indilib: ppc64 stable wrt bug #853286Agostino Sarubbo2022-06-221-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/stellarsolver: Drop 1.9Andreas Sturmlechner2022-06-222-28/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/stellarsolver: Stabilize 2.2 x86, #839555Sam James2022-06-211-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/mpir: fix typo in metadata.xml descriptionSam James2022-06-211-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/mpir: add github upstream metadataSam James2022-06-211-9/+12
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/mpir: use HTTPSSam James2022-06-211-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: update EAPI 7 -> 8; drop back to autotoolsSam James2022-06-213-0/+144
| | | | | | Bug: https://github.com/HDFGroup/hdf5/issues/1814 Closes: https://bugs.gentoo.org/665378 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.6-r1 ppc, #853286Arthur Zamarin2022-06-211-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.6-r1 amd64, #853286Jakov Smolić2022-06-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/dcmtk: add missing doc building dependencyAndrew Ammerlaan2022-06-211-1/+4
| | | | | Closes: https://bugs.gentoo.org/853295 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/symengine: remove unused patchMichael Mair-Keimberger2022-06-211-19/+0
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/25878 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/opencascade: drop 7.6.0-r4Bernd Waibel2022-06-212-171/+0
| | | | | | Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/26015 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dcmtk: remove unnecessary dep on libjpegFrançois-Xavier Carton2022-06-213-3/+0
| | | | | | | | IJG's libjpeg is bundled and used internally, libjpeg-turbo is not used. Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/25533 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dcmtk: bump to 3.6.7François-Xavier Carton2022-06-212-0/+87
| | | | | | Closes: https://bugs.gentoo.org/832453 Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dcmtk: rename bundled charls to avoid conflictsFrançois-Xavier Carton2022-06-212-0/+160
| | | | | | | | | | | | | | | | Using upstream patch [1]. Note: both Debian [2] and Fedora [3] have given up unbundling charls as the newer charls 2.0 is incompatible with charls 1.0 used by dcmtk and causes regressions. [1] https://git.dcmtk.org/?p=dcmtk.git;a=commitdiff;h=09afb527bb889932f919c28f47b08c84fe19ab32 [2] https://salsa.debian.org/med-team/dcmtk/-/commit/12aad369f3e5a6a4eac78b206a940cad80608bc7 [3] https://src.fedoraproject.org/rpms/dcmtk/c/d9cff801c2e4e2928e247a8c973b7118ec589ed5?branch=rawhide Closes: https://bugs.gentoo.org/832453 Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/plplot: fix OCaml depSam James2022-06-211-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cqrlib: Added 1.1.4orbea2022-06-214-0/+487
| | | | | | | | Bug: https://bugs.gentoo.org/778911 Upstream-PR: https://github.com/yayahjb/cqrlib/pull/1 Signed-off-by: orbea <orbea@riseup.net> Closes: https://github.com/gentoo/gentoo/pull/25971 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocSPARSE: backport upstream fix for testYiyang Wu2022-06-202-1/+36
| | | | | Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocSPARSE: fix data prepare under EAPI8Yiyang Wu2022-06-201-3/+3
| | | | | | | | | | | | In EAPI=7 BUILD_DIR is set throghout src_prepare, while in EAPI=8 BUILD_DIR is set after cmake_src_prepare. So run cmake_src_prepare before converting test data. Also, add LD_LIBRARY_PATH when testing Closes: https://github.com/gentoo/gentoo/pull/25313 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scotch: drop 6.1.0, 6.1.0-r1, 6.1.1David Seifert2022-06-204-522/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cqrlib: add github remote-idSam James2022-06-201-0/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/htslib: drop 1.13, 1.15David Seifert2022-06-193-106/+0
| | | | | Closes: https://github.com/gentoo/gentoo/pull/25964 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/tensorflow: restrict flatbuffers depSam James2022-06-173-3/+3
| | | | | Bug: https://bugs.gentoo.org/844196 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: add 9.0.1Sam James2022-06-172-0/+70
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: add a missing dep dev-libs/utfcpp to 7.6.2Joonas Niilola2022-06-141-0/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: avoid pre-stripping binariesBernd Waibel2022-06-146-0/+38
| | | | | | | | | | | Remove cmake settings for gcc and clang to not strip the binaries during linking stage. Closes: https://bugs.gentoo.org/831800 Bug: https://dev.opencascade.org/content/dont-pre-strip-binaries Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/25764 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: add 7.6.2Bernd Waibel2022-06-142-0/+170
| | | | | | Closes: https://bugs.gentoo.org/848063 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/plplot: enable py3.10Sam James2022-06-141-2/+2
| | | | | Closes: https://bugs.gentoo.org/846272 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: Drop 1.9.6 (r0)Andreas Sturmlechner2022-06-141-69/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Use udev_reload, switch to media-libs/libjpeg-turboAndreas Sturmlechner2022-06-141-0/+77
| | | | | | Closes: https://bugs.gentoo.org/847643 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/foxi: add to treeAlfredo Tupone2022-06-144-0/+113
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/hdf5: Stabilize 1.12.2-r2 x86, #851471Jakov Smolić2022-06-141-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/trilinos: add missing instantiationsMatthias Maier2022-06-132-0/+2
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: use proper USE flag nameMatthias Maier2022-06-133-5/+5
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: add 13.2.0Matthias Maier2022-06-132-0/+253
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* Revert "sci-libs/trilinos: add missing instantiations"Matthias Maier2022-06-131-5/+2
| | | | | | This reverts commit 934e7d66c7e9bc9d14700953a2a3eff75957bb80. Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: add missing instantiationsMatthias Maier2022-06-131-2/+5
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: add USE=all_modules flag, ebuild maintenanceMatthias Maier2022-06-132-8/+31
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: update LICENSE, enable py3.11Andrew Ammerlaan2022-06-131-2/+9
| | | | | | | I got most of them, but there might still be some licenses missing Bug: https://bugs.gentoo.org/723788 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gmsh: minor ebuild improvementsMichael Mair-Keimberger2022-06-132-8/+8
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/25806 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-image: add 0.19.2Andrew Ammerlaan2022-06-132-0/+55
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn: add 1.1.1Andrew Ammerlaan2022-06-132-0/+60
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hdf5: sparc stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="sparc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hdf5: ppc64 stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf: ppc64 stable wrt bug #851468Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hdf5: ppc stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hdf5: arm64 stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hdf5: arm stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hdf5: amd64 stable wrt bug #851471Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf: amd64 stable wrt bug #851468Agostino Sarubbo2022-06-131-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>