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* sci-mathematics/glpk: drop to ~hppaRolf Eike Beer2020-04-111-1/+1
| | | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-mathematics/octave: drop to ~hppaRolf Eike Beer2020-04-111-2/+2
| | | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-mathematics/maxima: revert 9cac2697e91de4b2484524f4f5618d809a8b03caAndrey Grozin2020-04-071-10/+0
| | | | | | | This change has broken building with sbcl Closes: https://bugs.gentoo.org/show_bug.cgi?id=715330 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andrey Grozin <grozin@gentoo.org>
* sci-mathematics/gfan: amd64 stable wrt bug #716362Agostino Sarubbo2020-04-071-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flint: Drop 2.4.4-r1Andreas Sturmlechner2020-04-069-367/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/flint: ppc stable wrt bug #716184Agostino Sarubbo2020-04-061-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flint: keyworded 2.5.2-r1 for ppc, bug #712002Sergei Trofimovich2020-04-041-1/+1
| | | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* */*: Drop stable ia64 keywordsMatt Turner2020-04-031-1/+1
| | | | Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-mathematics/flintqs: new package for quadratic sieve factoring.Michael Orlitzky2020-03-303-0/+64
| | | | | | | | | | | A straightforward import of the ebuild that François Bissey has been maintaining in the sage-on-gentoo overlay. I added a test suite that factors a large composite number based on the doctests for qsieve() in SageMath. Closes: https://bugs.gentoo.org/715090 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/octave: new version 5.2.0 sans imagemagick support.Michael Orlitzky2020-03-272-0/+202
| | | | | | | | | | | | | | | | | This new version drops two patches (zlib underlinking and qt-5.11 support) that have been fixed upstream in other ways. Unfortunately, it also temporarily disables USE=imagemagick, because the upstream support for imagemagick is broken. In the past, we have carried custom patches to fix that, but they no longer apply, and upstream has hinted that the approach they take will not be accepted. So to get this out the door, the simplest thing to do is to follow upstream and throw imagemagick under a bus. Bug: https://bugs.gentoo.org/401189 Bug: https://bugs.gentoo.org/660298 Closes: https://bugs.gentoo.org/709388 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/maxima: remove outdated app-emacs/imaxima blocker.Michael Orlitzky2020-03-261-1/+1
| | | | | | | | | | | | | Fix the pkgcheck warning OutdatedBlocker: version 5.43.2: outdated blocker DEPEND="!app-emacs/imaxima": last match removed 3.12 years ago by deleting that blocker. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/maxima: fix amd64 build with USE=clozurecl.Michael Orlitzky2020-03-261-0/+10
| | | | | | | | | The maxima build needs some special-case hacking on amd64 with clozurecl. Thanks to slyfox for the patch. Closes: https://bugs.gentoo.org/665364 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/eclib: x86 stable wrt bug #714602Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/cliquer: x86 stable wrt bug #714472Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/eclib: amd64 stable wrt bug #714602Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/cliquer: amd64 stable wrt bug #714472Agostino Sarubbo2020-03-251-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/planarity: maintainer stabilize on amd64/x86.Michael Orlitzky2020-03-241-1/+1
| | | | | | | | | There's no easy way to test this package, but I regularly use (and test) its SageMath interface, so I'm going to save the arch teams a pointless build test and stabilize it myself this time. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/rw: maintainer stabilize on amd64/x86.Michael Orlitzky2020-03-241-1/+1
| | | | | | | | | The best way to test this package is through its SageMath interface, which I do pretty regularly. The latest revision just drops a USE flag, and the previous one was around forever. It's stable. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/z3-4.8.6: Add missing dep on dev-libs/gmp[cxx]Patrick McLean2020-03-201-1/+1
| | | | | Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-mathematics/pymc3: Remove py2 virtualsMichał Górny2020-03-161-1/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-mathematics/genius: bump to 1.0.25, move to USE=guiMart Raudsepp2020-03-133-0/+232
| | | | | | Closes: https://bugs.gentoo.org/711782 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-mathematics/alt-ergo: fix build with ocaml-4.09Tupone Alfredo2020-03-101-2/+7
| | | | | | Closes: https://bugs.gentoo.org/712032 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/fricas: bump to 1.3.6Andrey Grozin2020-03-102-0/+109
| | | | | Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Andrey Grozin <grozin@gentoo.org>
* sci-mathematics/flint: Drop 2.4.5 and 2.5.2 (r0)Andreas Sturmlechner2020-03-093-141/+0
| | | | | Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/gmp-ecm: cleanup old versions.Michael Orlitzky2020-03-093-116/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/arb: cleanup old versions and patches.Michael Orlitzky2020-03-094-133/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gmp-ecm: x86 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flint: x86 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/arb: x86 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/gmp-ecm: amd64 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flint: amd64 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/arb: amd64 stable wrt bug #711872Agostino Sarubbo2020-03-091-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/glpk: add myself and François Bissey as maintainers.Michael Orlitzky2020-03-061-4/+15
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/glpk: new version 4.65.Michael Orlitzky2020-03-065-0/+231
| | | | | | | | | | | | | | | | | | | | | | This new upstream version fixes a few minor ebuild issues: * I've attempted to fix the MySQL include location in a more standard way, by using mysql_config (bug 597620). Another solution was already present in v4.63, so I've marked this bug as resolved. * The virtual/mysql dependency was replaced, per bug 666060. This will be completely resolved when v4.65 goes stable and v4.63 is removed. We also include a new patch, from upstream, to quiet some overly-verbose output. The patch to debundle the system libraries was forward-ported to the new version thanks to François Bissey, who maintained an ebuild for v4.65 in the sage-on-gentoo overlay until now. Bug: https://bugs.gentoo.org/666060 Closes: https://bugs.gentoo.org/597620 Closes: https://bugs.gentoo.org/711648 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gfan: improve the long description in metadata.xml.Michael Orlitzky2020-03-061-1/+16
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gfan: new version 0.6.2.Michael Orlitzky2020-03-065-0/+447
| | | | | | | | | | | | | | | | | | | | Update our version of gfan to the latest upstream v0.6.2, from September 28th 2017. The new ebuild is based off of the version that François Bissey maintains in the sage-on-gentoo overlay, with a few additional changes: * Merged the EAPI=7 and slot dependency updates from ::gentoo. * Change the LICENSE to "GPL-2+", to match the upstream LICENSE file. * Stripped some more CFLAGS mangling out of the upstream Makefile. Corresponding to this we now replace "-O3" by "-O2" in the ebuild. * Added USE="doc", to build and install the LaTeX manual. Closes: https://bugs.gentoo.org/711492 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gp2c: new version 0.0.11.3.Michael Orlitzky2020-03-062-0/+30
| | | | | | | | Upstream bugfix release gp2c-0.0.11pl3. The most interesting thing here Gentoo-wise is support for gcc-10.x (-fno-common). Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gmp-ecm: add "emake clean" to force a rebuild.Michael Orlitzky2020-03-021-2/+3
| | | | | | | | | | | Taking another shot at making USE=custom-tune do what it's supposed to do. The project's targets don't depend on ecm-params.h, so after we generate them, we need to "emake clean" and rebuild everything manually in order to use the custom parameters. Bug: https://bugs.gentoo.org/711078 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/lrcalc: x86 stable wrt bug #711030Agostino Sarubbo2020-03-021-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/gmp-ecm: fix USE=custom-tune.Michael Orlitzky2020-03-011-0/+10
| | | | | | | | | | | I overzealously removed the series of steps needed to build gmp-ecm with custom parameters in the -r2. We need to build, find the custom parameters, and then build again to reap the benefits. I left a comment in the ebuild to explain that to other, future mes. Bug: https://bugs.gentoo.org/711078 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/lrcalc: amd64 stable wrt bug #711030Agostino Sarubbo2020-03-011-1/+1
| | | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/gmp-ecm: fix openmp check.Michael Orlitzky2020-02-291-2/+2
| | | | | | | | | I screwed up the openmp check during translation from a manual tc-has-openmp() check to tc-check-openmp(). Fixed now, sorry! Closes: https://bugs.gentoo.org/711078 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/nauty: x86 stable wrt bug #711028Agostino Sarubbo2020-02-281-1/+1
| | | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flint: new EAPI=7 revision.Michael Orlitzky2020-02-285-0/+200
| | | | | | | | | | | | | | | | | | | This new revision is based off François Bissey's ebuild in the sage-on-gentoo overlay, which has accrued some fixes not present in the ::gentoo version. Of note, it fixes an open build bug, and an unreported issue where 32-bit libraries are detected on a 64-bit system. The update to EAPI=7 required only moving the LaTeX dependencies to BDEPEND. In the process, I updated the LICENSE to LGPL-2.1+ because upstream has done the same. I also looked long and hard for a reason why we have RESTRICT=mirror in the ebuild. Finding none, I have removed the restriction. Closes: https://bugs.gentoo.org/470732 Closes: https://bugs.gentoo.org/688674 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/wxmaxima: bump to 20.02.4Andrey Grozin2020-02-282-0/+50
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Andrey Grozin <grozin@gentoo.org>
* sci-mathematics/nauty: amd64 stable wrt bug #711028Agostino Sarubbo2020-02-281-2/+2
| | | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/gmp-ecm: new EAPI=7 revision.Michael Orlitzky2020-02-281-0/+36
| | | | | | | | | | | | The dependencies and build system of gmp-ecm have been improved over the years, and much of the cruft in the ebuild could simply be deleted. This commit adds an -r2, based on François Bissey's ebuild in the sage-on-gentoo overlay, to modernize things. I've manually verified the diff for sanity, and the test suite passes for me on amd64. Closes: https://bugs.gentoo.org/466498 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/rw: new revision sans the "rw" executable.Michael Orlitzky2020-02-282-18/+5
| | | | | | | | | | | | | | | The main use case for rw is as a library, specifically one used by SageMath. The "rw" executable was nice to have, but it pulls in dev-libs/igraph, and igraph upstream has gone crazy and started copy/pasting libraries into its "src" directory. Since igraph will never be upgraded like that, it's staying unmaintained and won't be stabilized, thereby blocking the stabilization of rw. This commit drops the "rw" executable entirely, so that we can get rid of the igraph dependency and stabilize a version of rw. Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gp2c: maintainer stabilize on amd64.Michael Orlitzky2020-02-281-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/arb: add myself and François Bissey as maintainers.Michael Orlitzky2020-02-271-0/+11
| | | | | | | | | This is a dependency of SageMath that can now be detected by its build system, even when working from a git clone. We both therefore have an interest in keeping it working. Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>