From 1a97fa93304f40cd96c86cdcfeebcf32b1d18646 Mon Sep 17 00:00:00 2001 From: Rick Farina Date: Mon, 27 Jan 2020 13:16:54 -0500 Subject: sci-libs/scipy: fixing numpy deps Package-Manager: Portage-2.3.85, Repoman-2.3.20 Signed-off-by: Rick Farina --- sci-libs/scipy/scipy-1.1.0-r2.ebuild | 143 +++++++++++++++++++++++++++++++++++ sci-libs/scipy/scipy-1.1.0.ebuild | 142 ---------------------------------- 2 files changed, 143 insertions(+), 142 deletions(-) create mode 100644 sci-libs/scipy/scipy-1.1.0-r2.ebuild delete mode 100644 sci-libs/scipy/scipy-1.1.0.ebuild diff --git a/sci-libs/scipy/scipy-1.1.0-r2.ebuild b/sci-libs/scipy/scipy-1.1.0-r2.ebuild new file mode 100644 index 000000000000..68223502d2cd --- /dev/null +++ b/sci-libs/scipy/scipy-1.1.0-r2.ebuild @@ -0,0 +1,143 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{6,7} ) +PYTHON_REQ_USE="threads(+)" + +DOC_PV=${PV} + +inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE="https://www.scipy.org/" +SRC_URI=" + mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf + )" + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc sparse test" +RESTRICT="!test? ( test )" +KEYWORDS="amd64 ~arm ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" + +CDEPEND=" + $(python_gen_cond_dep '|| ( dev-python/numpy-python2[${PYTHON_USEDEP}] >=dev-python/numpy-1.7.1[${PYTHON_USEDEP}] )' 'python2*') + $(python_gen_cond_dep '>=dev-python/numpy-1.7.1[${PYTHON_USEDEP}]' 'python3*') + sci-libs/arpack:0= + virtual/cblas + virtual/lapack + sparse? ( sci-libs/umfpack:0= )" +DEPEND="${CDEPEND} + dev-lang/swig + >=dev-python/cython-0.22[${PYTHON_USEDEP}] + >=dev-python/setuptools-36[${PYTHON_USEDEP}] + virtual/pkgconfig + doc? ( app-arch/unzip ) + test? ( + dev-python/nose[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + )" +RDEPEND="${CDEPEND} + dev-python/pillow[${PYTHON_USEDEP}]" + +DOCS=( HACKING.rst.txt THANKS.txt ) + +DISTUTILS_IN_SOURCE_BUILD=1 + +src_unpack() { + default + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die + fi +} + +pc_incdir() { + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libdir() { + $(tc-getPKG_CONFIG) --libs-only-L $@ | \ + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libs() { + $(tc-getPKG_CONFIG) --libs-only-l $@ | \ + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' +} + +python_prepare_all() { + # scipy automatically detects libraries by default + export {FFTW,FFTW3,UMFPACK}=None + use sparse && unset UMFPACK + # the missing symbols are in -lpythonX.Y, but since the version can + # differ, we just introduce the same scaryness as on Linux/ELF + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + [[ -z ${FC} ]] && export FC="$(tc-getFC)" + # hack to force F77 to be FC until bug #278772 is fixed + [[ -z ${F77} ]] && export F77="$(tc-getFC)" + export F90="${FC}" + export SCIPY_FCONFIG="config_fc --noopt --noarch" + append-fflags -fPIC + + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF || die + [blas] + include_dirs = $(pc_incdir cblas) + library_dirs = $(pc_libdir cblas blas):${libdir} + blas_libs = $(pc_libs cblas blas) + [lapack] + library_dirs = $(pc_libdir lapack):${libdir} + lapack_libs = $(pc_libs lapack) + EOF + + # Drop hashes to force rebuild of cython based .c code + rm cythonize.dat || die + + distutils-r1_python_prepare_all +} + +python_compile() { + # FIXME: parallel python building fails, bug #614464 + ${EPYTHON} tools/cythonize.py || die + distutils-r1_python_compile \ + ${SCIPY_FCONFIG} +} + +python_test() { + # fails with bdist_egg. should it be fixed in distutils-r1 eclass? + distutils_install_for_testing ${SCIPY_FCONFIG} + cd "${TEST_DIR}" || die "no ${TEST_DIR} available" + "${PYTHON}" -c \ + 'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \ + || die + "${EPYTHON}" -c \ + "import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \ + || die "Tests fail with ${EPYTHON}" +} + +python_install_all() { + use doc && \ + local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ + local HTML_DOCS=( "${WORKDIR}"/html/. ) + distutils-r1_python_install_all +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +pkg_postinst() { + elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" + elog "to your prefered image viewer. Example:" + elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" +} diff --git a/sci-libs/scipy/scipy-1.1.0.ebuild b/sci-libs/scipy/scipy-1.1.0.ebuild deleted file mode 100644 index a676281fbac9..000000000000 --- a/sci-libs/scipy/scipy-1.1.0.ebuild +++ /dev/null @@ -1,142 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_{6,7} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" -KEYWORDS="amd64 ~arm ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.22[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - distutils-r1_python_prepare_all -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}" || die "no ${TEST_DIR} available" - "${PYTHON}" -c \ - 'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \ - || die - "${EPYTHON}" -c \ - "import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \ - || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} -- cgit v1.2.3-65-gdbad