From 1e9653dd0688577b64da7071962cce1c76abc8c5 Mon Sep 17 00:00:00 2001 From: Sam James Date: Thu, 19 May 2022 03:01:07 +0000 Subject: dev-python/scipy: add 1.8.1 Signed-off-by: Sam James --- dev-python/scipy/Manifest | 3 + dev-python/scipy/scipy-1.8.1.ebuild | 189 ++++++++++++++++++++++++++++++++++++ 2 files changed, 192 insertions(+) create mode 100644 dev-python/scipy/scipy-1.8.1.ebuild diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index d49ac5272be8..76487212a3c9 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -1,3 +1,6 @@ DIST scipy-1.8.0.tar.gz 38313602 BLAKE2B 3f071ad3dfa350bba7eaf8e06c8bdb660f9dc1ef0e0bfc1eb1be2c400f947b2b26d62066a4b0f603ae56244131aff6e4c5b7e87cfd2aa7b278e3071062a4bf02 SHA512 674652728ae76479d17189e6974895bb838a8e83b17b9fb91c5f86faebf2a1387e1466555ac5b51d05c293f9b31b9a72e634f5858105ea984ca94bd2f05bbb4c +DIST scipy-1.8.1.tar.gz 38196215 BLAKE2B 180ae646adba2031a4bf99cd4feefe652b8e340110b3b2872e61aa1083054aadf369c7e3b3e3fd8fb71fcd831c95841d2dadd1c71e35e5f7d95800e5551173f0 SHA512 f6fc71c209991fe82baa4b10d8ade0deb1057f6f5942a91dfb7ae45f3eb78a4535efa2861badf5e2d37239fa99dbd99de760aa7e4854b95991ade0263004e7ea DIST scipy-html-1.7.1.zip 32435246 BLAKE2B fd8173da41aba95a14b1376f848bc668c4659bf1bbbdd0f87d926633d36f29c039957d38be145a5583010ebd83f6458090f75bdad773cc0f1591664e13c04c20 SHA512 ee59722878f6ef2d2319cdf4e6a60d3d1184f7c22752f9a8859eaa46fb677ebac9e8eef9c0826998e12bac9399e336799843341ef203224a82c9101347149672 +DIST scipy-html-1.8.1.zip 37060661 BLAKE2B 2fa617c58eb47463f8a61f9798b32c6da255d26b8e86c1558e427a715093f5a29ced3847ab6ecfe88ce1017664f36ac3e9fa9bbf72ede7e0fd3812b5f41fe933 SHA512 95153dc1f404aa64898a700c94c0deea3ca842c3152167d0987edabcf4a8eba16b6c8e6bc38a6775a849dc621e6a21434baf53d1669b1865fa5049cffa4387ac DIST scipy-ref-1.7.1.pdf 33542025 BLAKE2B 6c978f06b770805f0fae06db740e8596658d98bbbc93c865127eae909957503bb38e02a9c97319aed07608718f8f373374b1cf3a8c3bd624aa3143f1d21bc428 SHA512 45720dc299594bac5c7539f950a0ff135b125d86bfe9847032cbff1f294601fefd0a1ac3fd7e3928b2702390c318ae2f8adca6403ba06ea1ded705fcff94ab79 +DIST scipy-ref-1.8.1.pdf 35025868 BLAKE2B 9221755d2dc69b8623271f75ff3078a0a4410fe9ff69ee317b40bf145af7da21a7f5f4b6b67820d8bb2878f83b7014f1ea7c2f0e026afb716da0479d394505e2 SHA512 8f27dcb9dd1030e15266389af21a1475ecfec5ea777fb2dbcf8db8d3398ac6e45c7040b8d6dbaffd29be3920925427be7c55efdc8094d670c857edfdab7f7728 diff --git a/dev-python/scipy/scipy-1.8.1.ebuild b/dev-python/scipy/scipy-1.8.1.ebuild new file mode 100644 index 000000000000..81edc28b8dca --- /dev/null +++ b/dev-python/scipy/scipy-1.8.1.ebuild @@ -0,0 +1,189 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_IN_SOURCE_BUILD=1 +PYTHON_COMPAT=( python3_{8..10} ) +PYTHON_REQ_USE="threads(+)" + +inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs + +# Upstream is often behind with doc updates +DOC_PV=1.8.1 +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" +SRC_URI=" + mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${DOC_PV}.pdf + )" + +LICENSE="BSD LGPL-2" +SLOT="0" +KEYWORDS="~amd64 ~arm ~arm64 -hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" +IUSE="doc +pythran sparse" + +DEPEND=" + >=dev-python/numpy-1.17.3[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:0= + virtual/cblas + virtual/lapack + sparse? ( sci-libs/umfpack:0= )" +RDEPEND="${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}]" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-0.29.18[${PYTHON_USEDEP}] + dev-python/pybind11[${PYTHON_USEDEP}] + virtual/pkgconfig + doc? ( app-arch/unzip ) + pythran? ( dev-python/pythran[${PYTHON_USEDEP}] ) + test? ( + dev-python/nose[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + )" + +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +pc_incdir() { + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libdir() { + $(tc-getPKG_CONFIG) --libs-only-L $@ | \ + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libs() { + $(tc-getPKG_CONFIG) --libs-only-l $@ | \ + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' +} + +python_prepare_all() { + # scipy automatically detects libraries by default + export {FFTW,FFTW3,UMFPACK}=None + use sparse && unset UMFPACK + + # the missing symbols are in -lpythonX.Y, but since the version can + # differ, we just introduce the same scaryness as on Linux/ELF + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + [[ -z ${FC} ]] && export FC="$(tc-getFC)" + # hack to force F77 to be FC until bug #278772 is fixed + [[ -z ${F77} ]] && export F77="$(tc-getFC)" + export F90="${FC}" + export SCIPY_FCONFIG="config_fc --noopt --noarch" + append-fflags -fPIC + + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF || die + [blas] + include_dirs = $(pc_incdir cblas) + library_dirs = $(pc_libdir cblas blas):${libdir} + blas_libs = $(pc_libs cblas blas) + [lapack] + library_dirs = $(pc_libdir lapack):${libdir} + lapack_libs = $(pc_libs lapack) + EOF + cat >> setup.cfg <<-EOF || die + [options] + zip_safe = False + EOF + + # TODO + sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \ + -i scipy/stats/tests/test_continuous_basic.py || die + + # Skip known-failing test. Broken on all versions in Gentoo for years. + # bug #743295 + sed -e 's:test_bisplev_integer_overflow:_&:' \ + -i scipy/interpolate/tests/test_fitpack.py || die + + # Skip a few 32-bit related failures + if use x86 ; then + # TODO: Tidy this up and switch to epytest + sed -i -e 's:test_nd_axis_m1:_&:' \ + -e 's:test_nd_axis_0:_&:' \ + -e 's:test_maxiter_worsening:_&:' \ + -e 's:test_pdist_jensenshannon_iris:_&:' \ + -e 's:test_align_vectors_single_vector:_&:' \ + scipy/signal/tests/test_spectral.py \ + scipy/spatial/tests/test_distance.py \ + scipy/spatial/transform/tests/test_rotation.py || die + fi + + if has_version ">=sci-libs/lapack-3.10"; then + sed -e 's:test_sort(:_&:' \ + -i scipy/linalg/tests/test_decomp.py || die + sed -e 's:test_solve_discrete_are:_&:' \ + -i scipy/linalg/tests/test_solvers.py || die + fi + + distutils-r1_python_prepare_all +} + +python_configure_all() { + export SCIPY_USE_PYTHRAN=$(usex pythran 1 0) + + # bug 721860 + test-flag-FC -fallow-argument-mismatch && + append-fflags -fallow-argument-mismatch +} + +python_compile() { + # FIXME: parallel python building fails, bug #614464 + export ORIGINAL_MAKEOPTS="${MAKEOPTS}" + export MAKEOPTS=-j1 + + ${EPYTHON} tools/cythonize.py || die + distutils-r1_python_compile \ + ${SCIPY_FCONFIG} +} + +python_test() { + # fails with bdist_egg. should it be fixed in distutils-r1 eclass? + distutils_install_for_testing ${SCIPY_FCONFIG} + cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" + + # Let's try using pytest again with xdist to speed things up. + # Note that using pytest is required to avoid dying b/c of a + # deprecation warning with distutils in Python 3.01. + epytest -n "$(makeopts_jobs "${ORIGINAL_MAKEOPTS}" "$(get_nproc)")" +} + +python_install_all() { + use doc && \ + local DOCS=( "${DISTDIR}"/${PN}-ref-${DOC_PV}.pdf ) \ + local HTML_DOCS=( "${WORKDIR}"/html/. ) + distutils-r1_python_install_all +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} + python_optimize +} + +pkg_postinst() { + elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" + elog "to your prefered image viewer. Example:" + elog " echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" +} -- cgit v1.2.3-65-gdbad