From 25774a0a53557d280b9519cd6b85cf7da886e95f Mon Sep 17 00:00:00 2001
From: Sam James <sam@gentoo.org>
Date: Sat, 4 Feb 2023 17:19:53 +0000
Subject: sci-biology/augustus: add lpsolve subslot dep

Bug: https://bugs.gentoo.org/614866
Signed-off-by: Sam James <sam@gentoo.org>
---
 sci-biology/augustus/augustus-3.4.0-r2.ebuild | 51 ---------------------------
 sci-biology/augustus/augustus-3.4.0-r3.ebuild | 51 +++++++++++++++++++++++++++
 2 files changed, 51 insertions(+), 51 deletions(-)
 delete mode 100644 sci-biology/augustus/augustus-3.4.0-r2.ebuild
 create mode 100644 sci-biology/augustus/augustus-3.4.0-r3.ebuild

diff --git a/sci-biology/augustus/augustus-3.4.0-r2.ebuild b/sci-biology/augustus/augustus-3.4.0-r2.ebuild
deleted file mode 100644
index 30b3d7d0a6f8..000000000000
--- a/sci-biology/augustus/augustus-3.4.0-r2.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DOCS_BUILDER="doxygen"
-DOCS_CONFIG_NAME="doxygen.conf"
-inherit docs toolchain-funcs
-
-DESCRIPTION="Eukaryotic gene predictor"
-HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/"
-SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/${P^}"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
-	dev-db/sqlite:3
-	dev-db/mysql++:=
-	dev-db/mysql-connector-c:=
-	dev-libs/boost:=[zlib]
-	sci-biology/bamtools:=
-	sci-biology/samtools:0
-	sci-libs/gsl:=
-	sci-libs/htslib:=
-	sci-libs/suitesparse
-	sci-mathematics/lpsolve
-	sys-libs/zlib
-"
-DEPEND="${RDEPEND}"
-
-src_compile() {
-	tc-export CC CXX
-
-	emake LINK.cc="$(tc-getCXX)"
-
-	docs_compile
-}
-
-src_install() {
-	einstalldocs
-	# from upstream Makefile install:
-	dodir "opt/${P}"
-	cp -a config bin scripts "${ED}/opt/${P}" || die
-	local file
-	for file in bin/*; do
-		dosym "../${P}/${file}" "/opt/${file}"
-	done
-}
diff --git a/sci-biology/augustus/augustus-3.4.0-r3.ebuild b/sci-biology/augustus/augustus-3.4.0-r3.ebuild
new file mode 100644
index 000000000000..7c662aead62f
--- /dev/null
+++ b/sci-biology/augustus/augustus-3.4.0-r3.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DOCS_BUILDER="doxygen"
+DOCS_CONFIG_NAME="doxygen.conf"
+inherit docs toolchain-funcs
+
+DESCRIPTION="Eukaryotic gene predictor"
+HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/"
+SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/${P^}"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+	dev-db/sqlite:3
+	dev-db/mysql++:=
+	dev-db/mysql-connector-c:=
+	dev-libs/boost:=[zlib]
+	sci-biology/bamtools:=
+	sci-biology/samtools:0
+	sci-libs/gsl:=
+	sci-libs/htslib:=
+	sci-libs/suitesparse
+	sci-mathematics/lpsolve:=
+	sys-libs/zlib
+"
+DEPEND="${RDEPEND}"
+
+src_compile() {
+	tc-export CC CXX
+
+	emake LINK.cc="$(tc-getCXX)"
+
+	docs_compile
+}
+
+src_install() {
+	einstalldocs
+	# from upstream Makefile install:
+	dodir "opt/${P}"
+	cp -a config bin scripts "${ED}/opt/${P}" || die
+	local file
+	for file in bin/*; do
+		dosym "../${P}/${file}" "/opt/${file}"
+	done
+}
-- 
cgit v1.2.3-18-g5258