From e728877de767757bdff23a79092cf0fa15cf5d8a Mon Sep 17 00:00:00 2001 From: David Seifert Date: Sun, 3 Oct 2021 19:41:37 +0200 Subject: sci-biology/samtools: add 1.13 Signed-off-by: David Seifert --- sci-biology/samtools/samtools-1.13.ebuild | 47 +++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 sci-biology/samtools/samtools-1.13.ebuild (limited to 'sci-biology/samtools/samtools-1.13.ebuild') diff --git a/sci-biology/samtools/samtools-1.13.ebuild b/sci-biology/samtools/samtools-1.13.ebuild new file mode 100644 index 000000000000..3165c7b7381c --- /dev/null +++ b/sci-biology/samtools/samtools-1.13.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +RDEPEND=" + dev-lang/perl + =sci-libs/htslib-${PV}*:= + sys-libs/ncurses:=[unicode(+)] + sys-libs/zlib" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + default + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --with-ncurses \ + --with-htslib=system \ + CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_install() { + default + + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} -- cgit v1.2.3-18-g5258