From b7037b994137528a79d3e427a3a391d79ec90f38 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Wed, 11 Dec 2019 00:48:31 +0100
Subject: sci-biology/velvet: Port to EAPI 7

Package-Manager: Portage-2.3.81, Repoman-2.3.20
Signed-off-by: David Seifert <soap@gentoo.org>
---
 sci-biology/velvet/velvet-1.0.18-r1.ebuild | 53 ------------------------------
 1 file changed, 53 deletions(-)
 delete mode 100644 sci-biology/velvet/velvet-1.0.18-r1.ebuild

(limited to 'sci-biology/velvet/velvet-1.0.18-r1.ebuild')

diff --git a/sci-biology/velvet/velvet-1.0.18-r1.ebuild b/sci-biology/velvet/velvet-1.0.18-r1.ebuild
deleted file mode 100644
index a8ec87b6625a..000000000000
--- a/sci-biology/velvet/velvet-1.0.18-r1.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils toolchain-funcs flag-o-matic
-
-MY_P=${PN}_${PV}
-
-DESCRIPTION="A sequence assembler for very short reads"
-HOMEPAGE="https://www.ebi.ac.uk/~zerbino/velvet/"
-SRC_URI="https://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="-doc"
-KEYWORDS="amd64 x86"
-
-RDEPEND="sys-libs/zlib"
-DEPEND="${RDEPEND}
-	doc? ( virtual/latex-base )"
-
-S="${WORKDIR}"/${MY_P}
-
-src_prepare() {
-	# necessary?
-	# append-flags -O3 # as recommended by upstream
-	epatch "${FILESDIR}"/${P}-gentoo-r1.diff
-	use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
-}
-
-src_compile() {
-	tc-export CC
-	MAKE_XOPTS=""
-	if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
-	if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
-	emake -j1 $MAKE_XOPTS || die
-	emake -j1 $MAKE_XOPTS color || die
-}
-
-src_install() {
-	dobin velvet{g,h,g_de,h_de} || die
-	insinto /usr/share/${PN}
-	doins -r contrib || die
-	dodoc Manual.pdf CREDITS.txt ChangeLog || die
-}
-
-pkg_postinst() {
-	elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
-	elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
-	elog "environment or /etc/portage/make.conf, then re-emerge the package. For example:"
-	elog "	VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
-}
-- 
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