From 56bd759df1d0c750a065b8c845e93d5dfa6b549d Mon Sep 17 00:00:00 2001 From: "Robin H. Johnson" Date: Sat, 8 Aug 2015 13:49:04 -0700 Subject: proj/gentoo: Initial commit MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson X-Thanks: Alec Warner - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring - wrote much python to improve cvs2svn X-Thanks: Rich Freeman - validation scripts X-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed --- sci-mathematics/polymake/Manifest | 3 + .../polymake/files/polymake_gcc49.patch | 68 ++++++++++++++++ sci-mathematics/polymake/metadata.xml | 25 ++++++ sci-mathematics/polymake/polymake-2.13.ebuild | 64 +++++++++++++++ sci-mathematics/polymake/polymake-2.14-r1.ebuild | 90 ++++++++++++++++++++++ sci-mathematics/polymake/polymake-2.14.ebuild | 59 ++++++++++++++ 6 files changed, 309 insertions(+) create mode 100644 sci-mathematics/polymake/Manifest create mode 100644 sci-mathematics/polymake/files/polymake_gcc49.patch create mode 100644 sci-mathematics/polymake/metadata.xml create mode 100644 sci-mathematics/polymake/polymake-2.13.ebuild create mode 100644 sci-mathematics/polymake/polymake-2.14-r1.ebuild create mode 100644 sci-mathematics/polymake/polymake-2.14.ebuild (limited to 'sci-mathematics/polymake') diff --git a/sci-mathematics/polymake/Manifest b/sci-mathematics/polymake/Manifest new file mode 100644 index 000000000000..b4b030adde48 --- /dev/null +++ b/sci-mathematics/polymake/Manifest @@ -0,0 +1,3 @@ +DIST polymake-2.13-1.tar.bz2 16539798 SHA256 d010edc206b22356333493e90bd24f807c7341730232276d47dbf1b62eb53aba SHA512 90fd0c7eacbb673734e08860a753f75dae06347ce8affcb5d50c55a51975b85260db841393979c0143be5a71a26b6737f9513509d75a5950b40654c54d0be3ea WHIRLPOOL cef5c95930c7633acb0652e6ce3cd6c85b469af912ad1adb695e58a018e4cedbdac9f63caaeb12f3da0a8f7fb2b71e853b782f308a1594cfc89d2c9697e6c170 +DIST polymake-2.14-minimal.tar.bz2 1996581 SHA256 c43b525c6f329ae2d8eb6d0e2af63f7846c4e5d408627665a28d0f421bbbcf9b SHA512 8989a8d2eb42c03e46569eca24334083154ff5107d7cd7d9dc481790b1553acd38025bd48ca016407e5c08b4b08f8062e19a1d4828ef535f83292510bdf5cd07 WHIRLPOOL 3f1521c60eafcff60b8ab2a443ff051835ee1c667eefcd59b33227e7a84293ccaefad4bc05eea4b8c541dea513b85b4e8538b6b572d762f2e1167b733029ec54 +DIST polymake-2.14.tar.bz2 38747874 SHA256 c181277b5cd45ac00f5667647e4eb5fa13c20547623fd6e63ce2522c058883c2 SHA512 f66eac2e821060719a16a6979fa0cc20edf9598d425ba2fff5bddfc053fd582b05a5579e1c2521fd382733a4808955aa49cb946234a183aba3ef75eed8c02b22 WHIRLPOOL 26b21d28d6b9a76b7a3164b6d5e45a00ed8a604b3f973a22db1472dce714dec5f8ad5d2ee7133321e2cd0f48d6380343b8e6d93db9e79b6726ef1e9954c04405 diff --git a/sci-mathematics/polymake/files/polymake_gcc49.patch b/sci-mathematics/polymake/files/polymake_gcc49.patch new file mode 100644 index 000000000000..bc2cac5c5c58 --- /dev/null +++ b/sci-mathematics/polymake/files/polymake_gcc49.patch @@ -0,0 +1,68 @@ +commit 9fdecb57cb728170d0b87637c67947acf0cd27a4 +Author: Benjamin Lorenz +Date: Sat May 17 23:05:41 2014 +0200 + + fix ppl configure.pl test for gcc 4.9 + +diff --git a/bundled/ppl/configure.pl b/bundled/ppl/configure.pl +index 128af1f..a147ea1 100644 +--- a/bundled/ppl/configure.pl ++++ b/bundled/ppl/configure.pl +@@ -43,6 +43,7 @@ sub proceed { + + } else { + my $error=Polymake::Configure::build_test_program(<<"---", Libs => "-lppl -lgmp"); ++#include + #include "ppl.hh" + #include + int main() { + +commit 6651dd4b284085ffb7385d6cbca1785b6242003b +Author: Benjamin Lorenz +Date: Wed May 7 15:53:12 2014 +0200 + + another gcc 4.9 cstddef header fix + +diff --git a/bundled/bliss/apps/graph/src/GraphIso.cc b/bundled/bliss/apps/graph/src/GraphIso.cc +index 4000dd5..14e0e8f 100644 +--- a/bundled/bliss/apps/graph/src/GraphIso.cc ++++ b/bundled/bliss/apps/graph/src/GraphIso.cc +@@ -15,6 +15,7 @@ + */ + + #include ++#include // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html + #include + #include "polymake/graph/GraphIso.h" + + +commit 716639b858f476d6a2fd8fe51da67d6cb347ec7c +Author: Benjamin Lorenz +Date: Tue May 6 14:58:33 2014 +0200 + + cstddef include fix for gcc 4.9 (see http://gcc.gnu.org/gcc-4.9/porting_to.html) + +diff --git a/bundled/libnormaliz/apps/polytope/src/normaliz.cc b/bundled/libnormaliz/apps/polytope/src/normaliz.cc +index e6f2208..81e9783 100644 +--- a/bundled/libnormaliz/apps/polytope/src/normaliz.cc ++++ b/bundled/libnormaliz/apps/polytope/src/normaliz.cc +@@ -14,6 +14,7 @@ + -------------------------------------------------------------------------------- + */ + ++#include // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html + #include + + #include "polymake/client.h" +diff --git a/bundled/ppl/apps/polytope/include/ppl_interface_impl.h b/bundled/ppl/apps/polytope/include/ppl_interface_impl.h +index fda2f39..1040c9e 100644 +--- a/bundled/ppl/apps/polytope/include/ppl_interface_impl.h ++++ b/bundled/ppl/apps/polytope/include/ppl_interface_impl.h +@@ -17,6 +17,7 @@ + #ifndef POLYMAKE_POLYTOPE_PPL_INTERFACE_IMPL_H + #define POLYMAKE_POLYTOPE_PPL_INTERFACE_IMPL_H + ++#include // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html + #include //for mpz/mpq-handling + #include "polymake/polytope/ppl_interface.h" + #include "polymake/common/lattice_tools.h" diff --git a/sci-mathematics/polymake/metadata.xml b/sci-mathematics/polymake/metadata.xml new file mode 100644 index 000000000000..2e7b4a5deb47 --- /dev/null +++ b/sci-mathematics/polymake/metadata.xml @@ -0,0 +1,25 @@ + + + + +tomka@gentoo.org +Thomas Kahle + +sci-mathematics + + Enable sci-libs/cddlib interface for convex hull + computations (Should be kept enabled). + Enable sci-libs/lrslib interface for convex hull computations. + Enable dev-libs/ppl interface for convex hull computations. + Enable sci-libs/bliss interface for graph and face lattice isomorphism computations. + Build extension for dealing with permutation groups and symmetric objects. + Build the bundled extension for lattice related computations. + Enable the interface to sci-mathematics/singular for ideal related computations. + Build the polymake library to build applications using the C++ interface. + + +Polymake started out as a tool for the algorithmic treatment of convex +polyhedra. By now it also deals with finite simplicial complexes, +tight spans of finite metric spaces, and other objects. + + diff --git a/sci-mathematics/polymake/polymake-2.13.ebuild b/sci-mathematics/polymake/polymake-2.13.ebuild new file mode 100644 index 000000000000..26e172f13b05 --- /dev/null +++ b/sci-mathematics/polymake/polymake-2.13.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils flag-o-matic + +MY_PV=${PV}-1 + +DESCRIPTION="research tool for polyhedral geometry and combinatorics" +SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${PN}-${MY_PV}.tar.bz2" +HOMEPAGE="http://polymake.org" + +IUSE="libpolymake" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +DEPEND="dev-libs/gmp + dev-libs/boost + dev-libs/libxml2:2 + dev-perl/XML-LibXML + dev-libs/libxslt + dev-perl/XML-LibXSLT + dev-perl/XML-Writer + dev-perl/Term-ReadLine-Gnu" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${PN}-${MY_PV}" + +src_prepare() { + # Don't strip + sed -i '/system "strip $to"/d' support/install.pl || die + epatch "${FILESDIR}/${PN}_gcc49.patch" + + einfo "During compile this package uses up to" + einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if" + einfo "you run into trouble." +} + +src_configure () { + export CXXOPT=$(get-flag -O) + # Configure does not accept --host, therefore econf cannot be used + ./configure --prefix="${EPREFIX}/usr" \ + --without-java \ + $(use_with libpolymake callable) \ + --without-prereq \ + --libdir="${EPREFIX}/usr/$(get_libdir)" \ + --libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \ + "${myconf}" || die +} + +src_install(){ + emake -j1 DESTDIR="${D}" install + dosym libpolymake.so "${EPREFIX}/usr/$(get_libdir)/libpolymake.so.0" +} + +pkg_postinst(){ + elog "Docs can be found on http://www.polymake.org/doku.php/documentation" + elog " " + elog "Support for jreality is missing, sorry (see bug #346073)." +} diff --git a/sci-mathematics/polymake/polymake-2.14-r1.ebuild b/sci-mathematics/polymake/polymake-2.14-r1.ebuild new file mode 100644 index 000000000000..d85b9c857663 --- /dev/null +++ b/sci-mathematics/polymake/polymake-2.14-r1.ebuild @@ -0,0 +1,90 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils flag-o-matic + +DESCRIPTION="research tool for polyhedral geometry and combinatorics" +SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${P}-minimal.tar.bz2" +HOMEPAGE="http://polymake.org" + +IUSE="+cdd lrs ppl bliss group +libnormaliz singular libpolymake" + +REQUIRED_USE="group? ( cdd lrs )" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +# do not allow new perl versions because our testbuilds segfault +DEPEND="=sci-libs/lrslib-051[gmp] ) + bliss? ( sci-libs/bliss[gmp] ) + group? ( dev-libs/boost ) + libnormaliz? ( dev-libs/boost ) + singular? ( >=sci-mathematics/singular-4.0.1 )" +RDEPEND="${DEPEND} + dev-perl/XML-LibXML + dev-perl/XML-LibXSLT + dev-perl/XML-Writer + dev-perl/Term-ReadLine-Gnu" + +src_prepare() { + einfo "During compile this package uses up to" + einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if" + einfo "you run into trouble." +} + +src_configure () { + export CXXOPT=$(get-flag -O) + + # We need to define BLISS_USE_GMP if bliss was built with gmp support. + # Therefore we require gmp support on bliss, so that the package + # manager can prevent rebuilds with changed gmp flag. + if use bliss ; then + append-cxxflags -DBLISS_USE_GMP + fi + + # Configure does not accept --host, therefore econf cannot be used + + # Some of the options do not support using just '--with-option' + local myconf="" + use !group && myconf="$myconf --without-group" + use !libnormaliz && myconf="$myconf --without-libnormaliz" + use !libpolymake && myconf="$myconf --without-callable" + + # And many other --with-arguments expect a path: --with-option=/path + ./configure --prefix="${EPREFIX}/usr" \ + --libdir="${EPREFIX}/usr/$(get_libdir)" \ + --libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \ + --without-prereq \ + --without-java \ + $(use_with cdd cdd "${EPREFIX}/usr") \ + $(use_with lrs lrs "${EPREFIX}/usr") \ + $(use_with ppl ppl "${EPREFIX}/usr") \ + $(use_with bliss bliss "${EPREFIX}/usr") \ + $(use_with singular singular "${EPREFIX}/usr") \ + ${myconf} || die +} + +src_install(){ + emake -j1 DESTDIR="${D}" install +} + +pkg_postinst(){ + elog "Docs can be found on http://www.polymake.org/doku.php/documentation" + elog " " + elog "Support for jreality is missing, sorry (see bug #346073)." + elog " " + elog "Additional features for polymake are available through external" + elog "software such as sci-mathmatics/4ti2 and sci-mathematics/topcom." + elog "After installing new external software run 'polymake --reconfigure'." +} diff --git a/sci-mathematics/polymake/polymake-2.14.ebuild b/sci-mathematics/polymake/polymake-2.14.ebuild new file mode 100644 index 000000000000..1e9a96a9749b --- /dev/null +++ b/sci-mathematics/polymake/polymake-2.14.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils flag-o-matic + +DESCRIPTION="research tool for polyhedral geometry and combinatorics" +SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${P}.tar.bz2" +HOMEPAGE="http://polymake.org" + +IUSE="libpolymake" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +DEPEND="dev-libs/gmp + dev-libs/boost + dev-libs/libxml2:2 + dev-perl/XML-LibXML + dev-libs/libxslt + dev-perl/XML-LibXSLT + dev-perl/XML-Writer + dev-perl/Term-ReadLine-Gnu" +RDEPEND="${DEPEND}" + +src_prepare() { + # Don't strip + sed -i '/system "strip $to"/d' support/install.pl || die + + einfo "During compile this package uses up to" + einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if" + einfo "you run into trouble." +} + +src_configure () { + export CXXOPT=$(get-flag -O) + # Configure does not accept --host, therefore econf cannot be used + ./configure --prefix="${EPREFIX}/usr" \ + --without-java \ + $(use_with libpolymake callable) \ + --without-prereq \ + --libdir="${EPREFIX}/usr/$(get_libdir)" \ + --libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \ + "${myconf}" || die +} + +src_install(){ + emake -j1 DESTDIR="${D}" install + dosym libpolymake.so "${EPREFIX}/usr/$(get_libdir)/libpolymake.so.0" +} + +pkg_postinst(){ + elog "Docs can be found on http://www.polymake.org/doku.php/documentation" + elog " " + elog "Support for jreality is missing, sorry (see bug #346073)." +} -- cgit v1.2.3-18-g5258