--- setup.py.orig 2013-05-16 21:36:29.616510963 +1200 +++ setup.py 2013-05-16 21:51:08.456347311 +1200 @@ -2,7 +2,7 @@ from glob import glob # Modifiy this if BLAS and LAPACK libraries are not in /usr/lib. -BLAS_LIB_DIR = '/usr/lib' +BLAS_LIB_DIR = '' # Default names of BLAS and LAPACK libraries BLAS_LIB = ['blas'] @@ -18,37 +18,37 @@ BUILD_GSL = 0 # Directory containing libgsl (used only when BUILD_GSL = 1). -GSL_LIB_DIR = '/usr/lib' +GSL_LIB_DIR = '' # Directory containing the GSL header files (used only when BUILD_GSL = 1). -GSL_INC_DIR = '/usr/include/gsl' +GSL_INC_DIR = '' # Set to 1 if you are installing the fftw module. BUILD_FFTW = 0 # Directory containing libfftw3 (used only when BUILD_FFTW = 1). -FFTW_LIB_DIR = '/usr/lib' +FFTW_LIB_DIR = '' # Directory containing fftw.h (used only when BUILD_FFTW = 1). -FFTW_INC_DIR = '/usr/include' +FFTW_INC_DIR = '' # Set to 1 if you are installing the glpk module. BUILD_GLPK = 0 # Directory containing libglpk (used only when BUILD_GLPK = 1). -GLPK_LIB_DIR = '/usr/lib' +GLPK_LIB_DIR = '' # Directory containing glpk.h (used only when BUILD_GLPK = 1). -GLPK_INC_DIR = '/usr/include' +GLPK_INC_DIR = '' # Set to 1 if you are installing the DSDP module. BUILD_DSDP = 0 # Directory containing libdsdp (used only when BUILD_DSDP = 1). -DSDP_LIB_DIR = '/usr/lib' +DSDP_LIB_DIR = '' # Directory containing dsdp5.h (used only when BUILD_DSDP = 1). -DSDP_INC_DIR = '/usr/include/dsdp' +DSDP_INC_DIR = '' # No modifications should be needed below this line. @@ -61,39 +61,32 @@ # optional modules if BUILD_GSL: - gsl = Extension('gsl', libraries = ['m', 'gsl'] + BLAS_LIB, - include_dirs = [ GSL_INC_DIR ], - library_dirs = [ GSL_LIB_DIR, BLAS_LIB_DIR ], - extra_link_args = BLAS_EXTRA_LINK_ARGS, + gsl = Extension('gsl', libraries = ['gsl'], + library_dirs = [ GSL_LIB_DIR ], sources = ['src/C/gsl.c'] ) extmods += [gsl]; if BUILD_FFTW: - fftw = Extension('fftw', libraries = ['fftw3'] + BLAS_LIB, - include_dirs = [ FFTW_INC_DIR ], - library_dirs = [ FFTW_LIB_DIR, BLAS_LIB_DIR ], - extra_link_args = BLAS_EXTRA_LINK_ARGS, + fftw = Extension('fftw', libraries = ['fftw3'], + library_dirs = [ FFTW_LIB_DIR ], sources = ['src/C/fftw.c'] ) extmods += [fftw]; if BUILD_GLPK: glpk = Extension('glpk', libraries = ['glpk'], - include_dirs = [ GLPK_INC_DIR ], library_dirs = [ GLPK_LIB_DIR ], sources = ['src/C/glpk.c'] ) extmods += [glpk]; if BUILD_DSDP: - dsdp = Extension('dsdp', libraries = ['dsdp'] + LAPACK_LIB + BLAS_LIB, - include_dirs = [ DSDP_INC_DIR ], - library_dirs = [ DSDP_LIB_DIR, BLAS_LIB_DIR ], - extra_link_args = BLAS_EXTRA_LINK_ARGS, + dsdp = Extension('dsdp', libraries = ['dsdp'], + library_dirs = [ DSDP_LIB_DIR ], sources = ['src/C/dsdp.c'] ) extmods += [dsdp]; # Required modules -base = Extension('base', libraries = ['m'] + LAPACK_LIB + BLAS_LIB, +base = Extension('base', libraries = ['m'] + LAPACK_LIB, library_dirs = [ BLAS_LIB_DIR ], define_macros = MACROS, extra_link_args = BLAS_EXTRA_LINK_ARGS, @@ -105,61 +98,36 @@ extra_link_args = BLAS_EXTRA_LINK_ARGS, sources = ['src/C/blas.c'] ) -lapack = Extension('lapack', libraries = LAPACK_LIB + BLAS_LIB, +lapack = Extension('lapack', libraries = LAPACK_LIB, library_dirs = [ BLAS_LIB_DIR ], define_macros = MACROS, extra_link_args = BLAS_EXTRA_LINK_ARGS, sources = ['src/C/lapack.c'] ) umfpack = Extension('umfpack', - include_dirs = [ 'src/C/SuiteSparse/UMFPACK/Include', - 'src/C/SuiteSparse/AMD/Include', - 'src/C/SuiteSparse/AMD/Source', - 'src/C/SuiteSparse/SuiteSparse_config' ], library_dirs = [ BLAS_LIB_DIR ], define_macros = MACROS + [('NTIMER', '1'), ('NCHOLMOD', '1')], - libraries = LAPACK_LIB + BLAS_LIB, + libraries = [ 'umfpack' ], extra_compile_args = ['-Wno-unknown-pragmas'], - extra_link_args = BLAS_EXTRA_LINK_ARGS, - sources = [ 'src/C/umfpack.c', - 'src/C/SuiteSparse/UMFPACK/Source/umfpack_global.c', - 'src/C/SuiteSparse/UMFPACK/Source/umfpack_tictoc.c' ] + - ['src/C/SuiteSparse/SuiteSparse_config/SuiteSparse_config.c'] + - glob('src/C/SuiteSparse_cvxopt_extra/umfpack/*')) + sources = [ 'src/C/umfpack.c' ]) # Build for int or long? import sys if sys.maxsize > 2**31: MACROS += [('DLONG',None)] cholmod = Extension('cholmod', - library_dirs = [ BLAS_LIB_DIR ], - libraries = LAPACK_LIB + BLAS_LIB, - include_dirs = [ 'src/C/SuiteSparse/CHOLMOD/Include', - 'src/C/SuiteSparse/COLAMD', - 'src/C/SuiteSparse/AMD/Include', - 'src/C/SuiteSparse/COLAMD/Include', - 'src/C/SuiteSparse/SuiteSparse_config' ], - define_macros = MACROS + [('NPARTITION', '1'), ('NTIMER', '1')], - extra_link_args = BLAS_EXTRA_LINK_ARGS, - sources = [ 'src/C/cholmod.c' ] + - ['src/C/SuiteSparse/AMD/Source/' + s for s in ['amd_global.c', - 'amd_postorder.c', 'amd_post_tree.c', 'amd_2.c']] + - ['src/C/SuiteSparse/COLAMD/Source/' + s for s in ['colamd.c', - 'colamd_global.c']] + - ['src/C/SuiteSparse/SuiteSparse_config/SuiteSparse_config.c'] + - glob('src/C/SuiteSparse/CHOLMOD/Core/c*.c') + - glob('src/C/SuiteSparse/CHOLMOD/Cholesky/c*.c') + - ['src/C/SuiteSparse/CHOLMOD/Check/cholmod_check.c'] + - glob('src/C/SuiteSparse/CHOLMOD/Supernodal/c*.c') ) + library_dirs = [ BLAS_LIB_DIR ], + libraries = ['cholmod'] + BLAS_LIB, + define_macros = MACROS + [('NPARTITION', '1'), ('NTIMER', '1')], + sources = [ 'src/C/cholmod.c' ]) amd = Extension('amd', - include_dirs = [ 'src/C/SuiteSparse/AMD/Include', - 'src/C/SuiteSparse/SuiteSparse_config' ], define_macros = MACROS, - sources = [ 'src/C/amd.c' ] + glob('src/C/SuiteSparse/AMD/Source/*.c') ) + libraries = ['amd'], + sources = [ 'src/C/amd.c' ]) misc_solvers = Extension('misc_solvers', - libraries = LAPACK_LIB + BLAS_LIB, + libraries = LAPACK_LIB, library_dirs = [ BLAS_LIB_DIR ], define_macros = MACROS, extra_link_args = BLAS_EXTRA_LINK_ARGS,