# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ # @ECLASS: emboss-r1.eclass # @MAINTAINER: # sci-biology@gentoo.org # jlec@gentoo.org # ted.tanberry@gmail.com # @AUTHOR: # Original author: Author Olivier Fisette # Next gen author: Justin Lecher # Next gen author: Ted Tanberry # @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons). # @DESCRIPTION: # The inheriting ebuild must set at least EAPI=5 and provide EBO_DESCRIPTION before the inherit line. # KEYWORDS should be set. Additionally "(R|P)DEPEND"encies and other standard # ebuild variables can be extended (FOO+=" bar"). # # Example: # # EAPI="5" # # EBO_DESCRIPTION="applications from the CBS group" # # inherit emboss-r1 # @ECLASS-VARIABLE: EBO_DESCRIPTION # @DEFAULT_UNSET # @DESCRIPTION: # Should be set. Completes the generic description of the embassy module as follows: # # EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g. # # "EMBOSS integrated version of applications from the CBS group" # # Defaults to the upstream name of the module. # @ECLASS-VARIABLE: EBO_EXTRA_ECONF # @DEFAULT_UNSET # @DESCRIPTION: # Extra config options passed to econf. case ${EAPI:-0} in 5) ;; *) die "this eclass doesn't support < EAPI 5" ;; esac inherit autotools-utils eutils flag-o-matic HOMEPAGE="http://emboss.sourceforge.net/" LICENSE="LGPL-2 GPL-2" SLOT="0" IUSE="mysql pdf png postgres static-libs X" DEPEND=" dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )" RDEPEND="${DEPEND}" if [[ ${PN} == embassy-* ]]; then EMBASSY_PACKAGE=yes # The EMBASSY package name, retrieved from the inheriting ebuild's name EN=${PN:8} # The full name and version of the EMBASSY package (excluding the Gentoo # revision number) EF=$(echo ${EN} | tr "[:lower:]" "[:upper:]")-${PV} : ${EBO_DESCRIPTION:=${EN}} DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}" SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PVR}.tar.gz" DEPEND+=" >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]" S="${WORKDIR}"/${EF} fi # @FUNCTION: emboss-r1_src_prepare # @DESCRIPTION: # Does the following things # # 1. Renames configure.in to configure.ac, if possible # 2. Applies ${PATCHES[@]} and runs autotools via autotools-utils.eclass # emboss-r1_src_prepare() { if [[ -e configure.in ]]; then mv configure.{in,ac} || die fi autotools-utils_src_prepare } # @FUNCTION: emboss-r1_src_configure # @DESCRIPTION: # runs econf with following options. # # $(use_with X x) # $(use_with png pngdriver) # $(use_with pdf hpdf) # $(use_with mysql mysql) # $(use_with postgres postgresql) # $(use_enable static-libs static) # --enable-large # --without-java # --enable-systemlibs # ${EBO_EXTRA_ECONF} emboss-r1_src_configure() { local myeconfargs=( $(use_with X x) $(use_with png pngdriver "${EPREFIX}/usr") $(use_with pdf hpdf "${EPREFIX}/usr") $(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config") $(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config") --enable-large --without-java --enable-systemlibs ${EBO_EXTRA_ECONF} ) [[ ${EMBASSY_PACKAGE} == yes ]] && \ append-cppflags "-I${EPREFIX}/usr/include/emboss" autotools-utils_src_configure } EXPORT_FUNCTIONS src_prepare src_configure