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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit toolchain-funcs versionator
MY_P=$(version_format_string '${PN}$1$2')
DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE=""
S=${WORKDIR}/${MY_P}
src_prepare() {
# Notice send by mail to prof. Ziheng Yang
sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608
}
src_compile() {
emake -C src \
CC="$(tc-getCC)" \
CFLAGS="${CFLAGS} -Wno-unused-result" \
LDFLAGS="${LDFLAGS}"
}
src_install() {
dodoc README.txt doc/*
insinto /usr/share/${PN}/control
doins *.ctl
insinto /usr/share/${PN}/dat
doins stewart* *.dat dat/*
insinto /usr/share/${PN}
doins -r examples/
cd src || die
dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2
}
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