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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
PYTHON_COMPAT=( python2_7 python3_{4,5} )
inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator
MYPV=$(get_version_component_range 1-2)
MYPD=${PN}-data-0.9
DESCRIPTION="Large Scale Machine Learning Toolbox"
HOMEPAGE="http://shogun-toolbox.org/"
SRC_URI="
ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )
examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
LICENSE="GPL-3 free-noncomm"
SLOT="0/16"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="doc examples lua mono octave python R ruby static-libs test"
REQUIRED_USE="
python? ( ${PYTHON_REQUIRED_USE} )
test? ( python )"
RDEPEND="
app-arch/bzip2:=
app-arch/gzip:=
app-arch/lzma:=
app-arch/snappy:=
dev-libs/lzo:=
>=dev-cpp/eigen-3.1
dev-libs/json-c:=
dev-libs/libxml2:=
dev-libs/protobuf:=
net-misc/curl:=
sci-libs/arpack:=
sci-libs/arprec:=
sci-libs/colpack:=
sci-libs/hdf5:=
sci-libs/nlopt:=
sci-mathematics/glpk:=
sci-mathematics/lpsolve:=
sys-libs/readline:0
sys-libs/zlib:=
virtual/blas
virtual/cblas
virtual/lapack
lua? ( dev-lang/lua:0 )
mono? ( dev-lang/mono )
octave? ( <sci-mathematics/octave-3.8.0[hdf5] )
python? ( dev-python/numpy[${PYTHON_USEDEP}] )
R? ( dev-lang/R )
ruby? ( dev-ruby/narray )"
DEPEND="${RDEPEND}
virtual/pkgconfig
doc? ( app-doc/doxygen[dot] )
lua? ( >=dev-lang/swig-2.0.4 )
mono? ( >=dev-lang/swig-2.0.4 )
octave? ( >=dev-lang/swig-2.0.4 )
python? ( >=dev-lang/swig-2.0.4 test? ( sci-libs/scipy ) )
R? ( >=dev-lang/swig-2.0.4 )
ruby? ( >=dev-lang/swig-2.0.4 )
test? (
dev-python/jinja[${PYTHON_USEDEP}]
dev-cpp/gmock
)"
# javamodular needs jblas (painful to package properly)
# permodular work in progress (as 3.2.0)
# could actually support multiple pythons, multiple rubys
# feel free to do work for it
PATCHES=(
"${FILESDIR}"/${P}-fix-buildsystem.patch
"${FILESDIR}"/${P}-remove-C-linkage.patch
)
pkg_setup() {
use python && python-single-r1_pkg_setup
}
src_configure() {
export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)"
export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)"
export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)"
export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)"
append-cppflags "$($(tc-getPKG_CONFIG) --cflags cblas)"
local mycmakeargs=(
-DCMAKE_SKIP_INSTALL_RPATH=ON
-DCMAKE_SKIP_RPATH=ON
-DBUNDLE_ARPREC=OFF
-DBUNDLE_COLPACK=OFF
-DBUNDLE_EIGEN=OFF
-DBUNDLE_JSON=OFF
-DBUNDLE_NLOPT=OFF
-DENABLE_COVERAGE=OFF
-DJavaModular=OFF
-DPerlModular=OFF
-DLIB_INSTALL_DIR=$(get_libdir)
-DLuaModular="$(usex lua)"
-DCSharpModular="$(usex mono)"
-DOctaveModular="$(usex octave)"
-DOctaveStatic="$(usex octave)"
-DPythonModular="$(usex python)"
-DPythonStatic="$(usex python)"
-DRModular="$(usex R)"
-DRStatic="$(usex R)"
-DRubyModular="$(usex ruby)"
-DENABLE_TESTING="$(usex test)"
-DBUILD_EXAMPLES="$(usex examples)"
)
cmake-utils_src_configure
# gentoo bug #302621
has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
}
src_compile() {
cmake-utils_src_compile
use doc && emake -C "${BUILD_DIR}"/doc
}
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