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<title>QA check results for repository science</title>
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<h1>science</h1>
<table class="log">
<tr class="" id="l1"><td><a href="#l1"><span>1</span></a></td><td><pre>{'description': {'en': 'The Gentoo Science Overlay is intended as a place to '
</pre></td></tr>
<tr class="" id="l2"><td><a href="#l2"><span>2</span></a></td><td><pre> 'work\n'
</pre></td></tr>
<tr class="" id="l3"><td><a href="#l3"><span>3</span></a></td><td><pre> ' outside of the main portage tree on experimental '
</pre></td></tr>
<tr class="" id="l4"><td><a href="#l4"><span>4</span></a></td><td><pre> 'ebuilds. Our aim is to\n'
</pre></td></tr>
<tr class="" id="l5"><td><a href="#l5"><span>5</span></a></td><td><pre> ' increase the rate of development of scientific '
</pre></td></tr>
<tr class="" id="l6"><td><a href="#l6"><span>6</span></a></td><td><pre> 'packages for Gentoo, but\n'
</pre></td></tr>
<tr class="" id="l7"><td><a href="#l7"><span>7</span></a></td><td><pre> ' ebuilds in this repository are by their very '
</pre></td></tr>
<tr class="" id="l8"><td><a href="#l8"><span>8</span></a></td><td><pre> 'nature more experimental. If\n'
</pre></td></tr>
<tr class="" id="l9"><td><a href="#l9"><span>9</span></a></td><td><pre> ' you wish to use them you should be willing to help '
</pre></td></tr>
<tr class="" id="l10"><td><a href="#l10"><span>10</span></a></td><td><pre> 'test and report\n'
</pre></td></tr>
<tr class="" id="l11"><td><a href="#l11"><span>11</span></a></td><td><pre> ' bugs. For contribution read '
</pre></td></tr>
<tr class="" id="l12"><td><a href="#l12"><span>12</span></a></td><td><pre> 'https://wiki.gentoo.org/wiki/Project:Science/Contributing\n'
</pre></td></tr>
<tr class="" id="l13"><td><a href="#l13"><span>13</span></a></td><td><pre> ' '},
</pre></td></tr>
<tr class="" id="l14"><td><a href="#l14"><span>14</span></a></td><td><pre> 'feed': ['https://cgit.gentoo.org/proj/sci.git/atom/',
</pre></td></tr>
<tr class="" id="l15"><td><a href="#l15"><span>15</span></a></td><td><pre> 'https://github.com/gentoo-science/sci/commits/master.atom'],
</pre></td></tr>
<tr class="" id="l16"><td><a href="#l16"><span>16</span></a></td><td><pre> 'homepage': 'https://wiki.gentoo.org/wiki/Project:Science',
</pre></td></tr>
<tr class="" id="l17"><td><a href="#l17"><span>17</span></a></td><td><pre> 'name': 'science',
</pre></td></tr>
<tr class="" id="l18"><td><a href="#l18"><span>18</span></a></td><td><pre> 'owner': [{'email': 'sci@gentoo.org', 'name': 'sci', 'type': 'project'}],
</pre></td></tr>
<tr class="" id="l19"><td><a href="#l19"><span>19</span></a></td><td><pre> 'quality': 'experimental',
</pre></td></tr>
<tr class="" id="l20"><td><a href="#l20"><span>20</span></a></td><td><pre> 'source': [{'type': 'git',
</pre></td></tr>
<tr class="" id="l21"><td><a href="#l21"><span>21</span></a></td><td><pre> 'uri': 'https://anongit.gentoo.org/git/proj/sci.git'},
</pre></td></tr>
<tr class="" id="l22"><td><a href="#l22"><span>22</span></a></td><td><pre> {'type': 'git', 'uri': 'git://anongit.gentoo.org/proj/sci.git'},
</pre></td></tr>
<tr class="" id="l23"><td><a href="#l23"><span>23</span></a></td><td><pre> {'type': 'git', 'uri': 'git+ssh://git@git.gentoo.org/proj/sci.git'},
</pre></td></tr>
<tr class="" id="l24"><td><a href="#l24"><span>24</span></a></td><td><pre> {'type': 'git', 'uri': 'https://github.com/gentoo-science/sci.git'},
</pre></td></tr>
<tr class="" id="l25"><td><a href="#l25"><span>25</span></a></td><td><pre> {'type': 'git', 'uri': 'git://github.com/gentoo-science/sci.git'},
</pre></td></tr>
<tr class="" id="l26"><td><a href="#l26"><span>26</span></a></td><td><pre> {'type': 'git', 'uri': 'git@github.com:gentoo-science/sci.git'}],
</pre></td></tr>
<tr class="" id="l27"><td><a href="#l27"><span>27</span></a></td><td><pre> 'status': 'official'}
</pre></td></tr>
<tr class="" id="l28"><td><a href="#l28"><span>28</span></a></td><td><pre>$ pmaint sync science
</pre></td></tr>
<tr class="" id="l29"><td><a href="#l29"><span>29</span></a></td><td><pre>warning: Pulling without specifying how to reconcile divergent branches is
</pre></td></tr>
<tr class="" id="l30"><td><a href="#l30"><span>30</span></a></td><td><pre>discouraged. You can squelch this message by running one of the following
</pre></td></tr>
<tr class="" id="l31"><td><a href="#l31"><span>31</span></a></td><td><pre>commands sometime before your next pull:
</pre></td></tr>
<tr class="" id="l32"><td><a href="#l32"><span>32</span></a></td><td><pre>
</pre></td></tr>
<tr class="" id="l33"><td><a href="#l33"><span>33</span></a></td><td><pre> git config pull.rebase false # merge (the default strategy)
</pre></td></tr>
<tr class="" id="l34"><td><a href="#l34"><span>34</span></a></td><td><pre> git config pull.rebase true # rebase
</pre></td></tr>
<tr class="" id="l35"><td><a href="#l35"><span>35</span></a></td><td><pre> git config pull.ff only # fast-forward only
</pre></td></tr>
<tr class="" id="l36"><td><a href="#l36"><span>36</span></a></td><td><pre>
</pre></td></tr>
<tr class="" id="l37"><td><a href="#l37"><span>37</span></a></td><td><pre>You can replace "git config" with "git config --global" to set a default
</pre></td></tr>
<tr class="" id="l38"><td><a href="#l38"><span>38</span></a></td><td><pre>preference for all repositories. You can also pass --rebase, --no-rebase,
</pre></td></tr>
<tr class="" id="l39"><td><a href="#l39"><span>39</span></a></td><td><pre>or --ff-only on the command line to override the configured default per
</pre></td></tr>
<tr class="" id="l40"><td><a href="#l40"><span>40</span></a></td><td><pre>invocation.
</pre></td></tr>
<tr class="" id="l41"><td><a href="#l41"><span>41</span></a></td><td><pre>
</pre></td></tr>
<tr class="" id="l42"><td><a href="#l42"><span>42</span></a></td><td><pre>Already up to date.
</pre></td></tr>
<tr class="" id="l43"><td><a href="#l43"><span>43</span></a></td><td><pre>*** syncing science
</pre></td></tr>
<tr class="" id="l44"><td><a href="#l44"><span>44</span></a></td><td><pre>*** synced science
</pre></td></tr>
<tr class="" id="l45"><td><a href="#l45"><span>45</span></a></td><td><pre> * Sync succeeded
</pre></td></tr>
<tr class="" id="l46"><td><a href="#l46"><span>46</span></a></td><td><pre>$ git log --format=%ci -1
</pre></td></tr>
<tr class="" id="l47"><td><a href="#l47"><span>47</span></a></td><td><pre>$ git show -q --pretty=format:%G? HEAD
</pre></td></tr>
<tr class="" id="l48"><td><a href="#l48"><span>48</span></a></td><td><pre>$ pmaint regen --use-local-desc --pkg-desc-index -t 1 science
</pre></td></tr>
<tr class="err" id="l49"><td><a href="#l49"><span>49</span></a></td><td><pre> * sci-biology/Atlas2-1.4.3: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l50"><td><a href="#l50"><span>50</span></a></td><td><pre> * sci-biology/bio-cd-hit-report-0.1.0: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l51"><td><a href="#l51"><span>51</span></a></td><td><pre> * sci-biology/biopieces-0.51: failed parsing REQUIRED_USE: '^^ ( python_single_target_python2_7 ) || ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l52"><td><a href="#l52"><span>52</span></a></td><td><pre> * sci-biology/biopieces-9999: failed parsing REQUIRED_USE: '^^ ( python_single_target_python2_7 ) || ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l53"><td><a href="#l53"><span>53</span></a></td><td><pre> * sci-biology/deeptools-9999: failed sourcing ebuild: inherit requires unknown eclass: git-2.eclass
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l54"><td><a href="#l54"><span>54</span></a></td><td><pre> * sci-biology/full_lengther_next-0.6.2: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l55"><td><a href="#l55"><span>55</span></a></td><td><pre> * sci-biology/scbi_blast-0.0.43: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l56"><td><a href="#l56"><span>56</span></a></td><td><pre> * sci-biology/scbi_fasta-0.1.9: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l57"><td><a href="#l57"><span>57</span></a></td><td><pre> * sci-biology/scbi_fastq-0.0.22: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l58"><td><a href="#l58"><span>58</span></a></td><td><pre> * sci-biology/scbi_mapreduce-0.0.45: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l59"><td><a href="#l59"><span>59</span></a></td><td><pre> * sci-biology/scbi_plot-0.0.7: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="err" id="l60"><td><a href="#l60"><span>60</span></a></td><td><pre> * sci-biology/scbi_zcat-0.0.2: failed parsing REQUIRED_USE: '|| ( )' is unparseable
</pre></td><td>[FATAL]</td></tr>
<tr class="" id="l61"><td><a href="#l61"><span>61</span></a></td><td><pre> * Cache regen failed with 1
</pre></td></tr>
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