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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-12-12 16:52:45 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-12-12 16:52:45 +0100 |
| commit | b927bec317d94efe2473ed7274fb086a6623640d (patch) | |
| tree | c015b8b7b146f87242ba5a9d71f35727b09af693 /sci-biology | |
| parent | sci-biology/est2uni: example of necessary config changes for vhosts setup (diff) | |
| download | sci-b927bec317d94efe2473ed7274fb086a6623640d.tar.gz sci-b927bec317d94efe2473ed7274fb086a6623640d.tar.bz2 sci-b927bec317d94efe2473ed7274fb086a6623640d.zip | |
added configuration.php.patch for VHOSTS setup
(Portage version: 2.1.10.38/git/Linux i686, unsigned Manifest commit)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/est2uni/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/est2uni/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/est2uni/est2uni-9999.ebuild | 5 |
3 files changed, 13 insertions, 2 deletions
diff --git a/sci-biology/est2uni/ChangeLog b/sci-biology/est2uni/ChangeLog index 6c7cd1b03..b4090e1ca 100644 --- a/sci-biology/est2uni/ChangeLog +++ b/sci-biology/est2uni/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 12 Dec 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + est2uni-9999.ebuild: + added configuration.php.patch for VHOSTS setup files/configuration.php.patch + est2uni-9999.ebuild + 30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +files/9999-est_clustering.pm.patch, +files/9999-pipe_db.pm.patch, +est2uni-9999.ebuild: diff --git a/sci-biology/est2uni/Manifest b/sci-biology/est2uni/Manifest index fac903531..01c42a720 100644 --- a/sci-biology/est2uni/Manifest +++ b/sci-biology/est2uni/Manifest @@ -1,6 +1,7 @@ AUX 9999-est_clustering.pm.patch 1276 RMD160 4a54b28c9a67ae8476255a4063768a1c7b466357 SHA1 1d255394dad2f608bd91f6064232a3cd431e368d SHA256 c289866a862a18a9385db9931c3c0c9175334e829819f075cc7fbf7e8bbd83ce AUX 9999-pipe_db.pm.patch 534 RMD160 8b2a5ef4de3a2c65eb65476cbb4decdad3eb8a74 SHA1 46509d05f01ae53764b4947ddb663edbb3bfee9d SHA256 11aa489e406bceabdd3b7d532fbca69ede1c0a116cc7a38ae9ea32dafc41f54c AUX 99est2uni 82 RMD160 4171612511e63f41fa57aa743a435e4e5ca811d1 SHA1 a51b17f763855cda65e3bf5f401dccab231e1593 SHA256 4317ba1309d2506682d5146f7fb52f388b368bfd2ab33b4a2cf95ec8b117341e +AUX configuration.php.patch 486 RMD160 b8800ae53e87fd14310b9f50f16b1a0cd5eb2316 SHA1 85846db51c77b01878a58e52e69c9abca334fb39 SHA256 4bdd7a7b2a97025b866c85bc1e7f84c94b26c2fb1b0919ffdebbd506cba8f0ea AUX est2uni 82 RMD160 4171612511e63f41fa57aa743a435e4e5ca811d1 SHA1 a51b17f763855cda65e3bf5f401dccab231e1593 SHA256 4317ba1309d2506682d5146f7fb52f388b368bfd2ab33b4a2cf95ec8b117341e AUX est_annot.pm.patch 19656 RMD160 83c75544edf45b7dffe92b97ec1935ec4774241d SHA1 f6051670594093ba89cb259cb0427222bf4a3f02 SHA256 fdfb19e711a05b02016ffbe57f5d68f5d7b8746690445aafa2cab6ebf8ddd058 AUX est_annot_go.pm.patch 6509 RMD160 82b050e110196dc493bebfe5a9611bef2389d851 SHA1 9af3454c02ee19cc67db4e9718b73ed4365f1bab SHA256 c804a571711fadc37742ff720d975d262e11346f9889ff83d3b061776dddf321 @@ -19,6 +20,6 @@ DIST UniVec_Core 542650 RMD160 a8cf42b9015622a8ac52839c7b794bbad4c1f92a SHA1 6eb DIST est2uni_0.27.tar.gz 4616613 RMD160 06ec260f79fe11f7779b75aad825e665f421d4eb SHA1 5ee9b5dc51f4829c5ed0d4ddd47bb68e7f3c43ee SHA256 33d2f2981ca70fa6707d3a2f310c0492cd12a430b6bb9b7ad8697a8fc3305cd4 DIST gene_ontology.obo 19990996 RMD160 b3584271ab0a05909cde9a92e6eb635b08fe23be SHA1 bdb9d396d4320bf639be310cf6f93b08b25ef0e9 SHA256 7f70c7a1dd4b75f6055f05c5e5445a49ecf20fed8172d54ec2d04722842ff19b EBUILD est2uni-0.27.ebuild 3292 RMD160 d676915e49ef8f3ec04da0391945441fd47028f1 SHA1 a349fbd92f6ec096f5cad8dbabb2769594531111 SHA256 e47c997ced2b2b01e4abc509349e389e9f1e3b272e696c606aa9d010984f2821 -EBUILD est2uni-9999.ebuild 3511 RMD160 355f09b04cc16424482896dd48b764066fdb68db SHA1 1cddcddb8f5c7ec0e8733258296df1c6c47856b4 SHA256 730bc309495d0be63208424c2fe18cd75fcb4410461f4100c0ec0cbe0affe706 -MISC ChangeLog 984 RMD160 87af050bbce9cf9611924edfd27c999183954591 SHA1 23aea083fd9d5eb9ccaa3e06bb4fca454ae5b7e1 SHA256 5d7413b010752dcc0cadc53633dc48d613e037f40ec946bc103be7f30e2b279d +EBUILD est2uni-9999.ebuild 3765 RMD160 c76d187688d0891afa1a3b5cfeae728f2164ff64 SHA1 ec83420907a4da7c1946b1be56a25e171acf37f9 SHA256 3e0f0b3729048208e28e3833611cdf070c65ee99f450dfab440aa71697396f0e +MISC ChangeLog 1169 RMD160 97730c9319e4f78b8ec608ddacdd7912d6e8b4a4 SHA1 1c0959ac14402d94e4368e51d760d921fb269460 SHA256 770bd3b573e575843b348473e9e5b9d5f8ae23c04cf50a3642232615e9a25e12 MISC metadata.xml 269 RMD160 53c242e331b0a82669ca7913da16dac854ab8dca SHA1 bc75ba3b0f5607ac5f396d3e8a99daf5ded5a7de SHA256 13472fd0615d2b381dbe36666fe1bbf3b1c34770aa409c6101b38741b4586f85 diff --git a/sci-biology/est2uni/est2uni-9999.ebuild b/sci-biology/est2uni/est2uni-9999.ebuild index 5066917d9..b3be36338 100644 --- a/sci-biology/est2uni/est2uni-9999.ebuild +++ b/sci-biology/est2uni/est2uni-9999.ebuild @@ -49,6 +49,8 @@ src_prepare(){ for f in "${FILESDIR}"/9999-*.pm.patch; do cd perl; epatch $f || die "Failed to apply patch $f" done + cd ../php || die "Failed to chdir to ../php" + epatch "${FILESDIR}"/configuration.php.patch || die "Failed to apply config patch for VHOSTS setup" } src_compile(){ @@ -83,6 +85,9 @@ src_install(){ einfo "Please follow the pipeline installation and web configuration docs at" einfo "http://cichlid.umd.edu/est2uni/install.php" + einfo "" + einfo "Example changes to the config file are in ${FILESDIR}/configuration.php.patch" + einfo "" einfo "BEWARE the software is not maintained anymore by upstream but I do not" einfo "know any better available (replaced by ngs_backbone which has no web" einfo "interface yet). Consider using latest svn checkout instead of 0.27" |